Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088470 | XP_003592405.1 | 95.676 | 185 | 8 | 0 | 1 | 185 | 1 | 185 | 8.94e-127 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088470 | B7FKK9 | 95.676 | 185 | 8 | 0 | 1 | 185 | 1 | 185 | 4.27e-127 | 367 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029020 | Msa0088470 | 0.808810 | 2.578722e-50 | -8.615850e-47 |
| Msa0088470 | Msa0134770 | 0.854932 | 8.853178e-62 | -8.615850e-47 |
| Msa0088470 | Msa0258700 | 0.801274 | 9.727548e-49 | -8.615850e-47 |
| Msa0088470 | Msa0335890 | 0.806023 | 1.005742e-49 | -8.615850e-47 |
| Msa0088470 | Msa0418600 | 0.808222 | 3.442733e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088470 | MtrunA17_Chr1g0205581 | 95.676 | 185 | 8 | 0 | 1 | 185 | 1 | 185 | 8.22e-131 | 367 |
| Msa0088470 | MtrunA17_Chr1g0193721 | 50.575 | 174 | 80 | 2 | 10 | 183 | 11 | 178 | 5.40e-62 | 192 |
| Msa0088470 | MtrunA17_Chr4g0009921 | 44.651 | 215 | 80 | 1 | 8 | 183 | 14 | 228 | 1.19e-59 | 188 |
| Msa0088470 | MtrunA17_Chr7g0238911 | 44.444 | 216 | 78 | 1 | 10 | 183 | 15 | 230 | 1.86e-59 | 187 |
| Msa0088470 | MtrunA17_Chr4g0031841 | 44.162 | 197 | 87 | 3 | 10 | 183 | 15 | 211 | 2.92e-54 | 174 |
| Msa0088470 | MtrunA17_Chr2g0328451 | 42.254 | 213 | 91 | 3 | 3 | 183 | 7 | 219 | 1.05e-52 | 170 |
| Msa0088470 | MtrunA17_Chr4g0009961 | 40.625 | 224 | 89 | 3 | 3 | 183 | 7 | 229 | 2.05e-52 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088470 | AT2G32150.3 | 70.225 | 178 | 52 | 1 | 8 | 184 | 4 | 181 | 2.85e-89 | 259 |
| Msa0088470 | AT2G32150.1 | 69.274 | 179 | 54 | 1 | 8 | 185 | 4 | 182 | 1.28e-88 | 261 |
| Msa0088470 | AT2G32150.2 | 69.832 | 179 | 53 | 1 | 8 | 185 | 4 | 182 | 5.66e-88 | 258 |
| Msa0088470 | AT5G02230.2 | 45.673 | 208 | 88 | 2 | 1 | 183 | 1 | 208 | 2.90e-53 | 171 |
| Msa0088470 | AT5G02230.1 | 45.673 | 208 | 88 | 2 | 1 | 183 | 1 | 208 | 2.90e-53 | 171 |
| Msa0088470 | AT5G59480.4 | 41.872 | 203 | 95 | 4 | 4 | 183 | 9 | 211 | 5.63e-53 | 171 |
| Msa0088470 | AT5G59480.5 | 41.872 | 203 | 95 | 4 | 4 | 183 | 9 | 211 | 5.63e-53 | 171 |
| Msa0088470 | AT5G59480.3 | 41.872 | 203 | 95 | 4 | 4 | 183 | 9 | 211 | 5.63e-53 | 171 |
| Msa0088470 | AT5G59480.1 | 41.872 | 203 | 95 | 4 | 4 | 183 | 9 | 211 | 5.63e-53 | 171 |
| Msa0088470 | AT5G02230.3 | 45.673 | 208 | 88 | 2 | 1 | 183 | 38 | 245 | 8.29e-53 | 171 |
| Msa0088470 | AT5G59480.2 | 41.872 | 203 | 94 | 5 | 4 | 183 | 9 | 210 | 9.64e-51 | 165 |
| Msa0088470 | AT5G59490.2 | 44.211 | 190 | 99 | 2 | 1 | 183 | 1 | 190 | 1.70e-48 | 157 |
| Msa0088470 | AT3G62040.1 | 50.345 | 145 | 66 | 2 | 40 | 183 | 1 | 140 | 2.90e-48 | 156 |
| Msa0088470 | AT5G59490.1 | 44.211 | 190 | 99 | 2 | 1 | 183 | 1 | 190 | 4.04e-48 | 157 |
Find 60 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTCGGGGCGGGTTGAATT+AGG | 0.220477 | 1_2:-69556422 | None:intergenic |
| AACTCTGAGGGTGGAAGCTT+TGG | 0.284733 | 1_2:-69555822 | None:intergenic |
| CGGGTTGAATTAGGTAGATT+TGG | 0.291979 | 1_2:-69556413 | None:intergenic |
| TACAATCTTCCTTTGGTTGA+TGG | 0.306805 | 1_2:-69556199 | None:intergenic |
| CTTAACGGCAGCTCCGATTC+CGG | 0.322496 | 1_2:-69555753 | None:intergenic |
| TTGTTAGATATTTACGAATT+CGG | 0.336620 | 1_2:+69556307 | Msa0088470:intron |
| GGGTTGAATTAGGTAGATTT+GGG | 0.378726 | 1_2:-69556412 | None:intergenic |
| AGGTTCCTTAACTGAATGTC+TGG | 0.381562 | 1_2:-69556168 | None:intergenic |
| CCCTTCGACTGCATTATCTT+CGG | 0.406216 | 1_2:+69555613 | Msa0088470:CDS |
| TCCCACGGTAGCACCCTTGC+CGG | 0.428799 | 1_2:+69555857 | Msa0088470:CDS |
| TTACAGCGTTGGACAGGCTT+GGG | 0.429999 | 1_2:+69556345 | Msa0088470:CDS |
| AAGAGGACAGGGAATTCGTC+GGG | 0.430210 | 1_2:-69556437 | None:intergenic |
| ATGGACATACAATCTTCCTT+TGG | 0.430892 | 1_2:-69556206 | None:intergenic |
| TACCCATCCAACACCGGAAT+CGG | 0.434558 | 1_2:+69555740 | Msa0088470:CDS |
| TTTGGTTGATGGAACGTAAG+AGG | 0.450307 | 1_2:-69556188 | None:intergenic |
| GCTCCGATTCCGGTGTTGGA+TGG | 0.451001 | 1_2:-69555743 | None:intergenic |
| GACAGGGAATTCGTCGGGGC+GGG | 0.456541 | 1_2:-69556432 | None:intergenic |
| TAGTGCGCGCAAACCGGCAA+GGG | 0.457452 | 1_2:-69555870 | None:intergenic |
| AACGAAGGTTTCAAGAGGAC+AGG | 0.466936 | 1_2:-69556449 | None:intergenic |
| CTTACAGCGTTGGACAGGCT+TGG | 0.474275 | 1_2:+69556344 | Msa0088470:CDS |
| GGCAGCTCCGATTCCGGTGT+TGG | 0.474489 | 1_2:-69555747 | None:intergenic |
| CTCCGATTCCGGTGTTGGAT+GGG | 0.477392 | 1_2:-69555742 | None:intergenic |
| TCAAACCAGACATTCAGTTA+AGG | 0.484093 | 1_2:+69556163 | Msa0088470:CDS |
| CTTGCCGGTTTGCGCGCACT+AGG | 0.496427 | 1_2:+69555872 | Msa0088470:CDS |
| TTCTTAGTTTCGTGCACGGA+AGG | 0.502187 | 1_2:+69556124 | Msa0088470:intron |
| AAACATTGATCTCTTCCTCA+TGG | 0.505692 | 1_2:+69555778 | Msa0088470:CDS |
| TGTCCTCTTGAAACCTTCGT+TGG | 0.512254 | 1_2:+69556451 | Msa0088470:CDS |
| TCCGGTGTTGGATGGGTACA+AGG | 0.513354 | 1_2:-69555735 | None:intergenic |
| GAGGATCCACGTTGGCAGCT+TGG | 0.514928 | 1_2:-69556493 | None:intergenic |
| ATGCACTTACAGCGTTGGAC+AGG | 0.521461 | 1_2:+69556339 | Msa0088470:CDS |
| ATAGCCTAGTGCGCGCAAAC+CGG | 0.536055 | 1_2:-69555876 | None:intergenic |
| GATTCATGCACTTACAGCGT+TGG | 0.537491 | 1_2:+69556334 | Msa0088470:CDS |
| AGCTTGGATCGCAATCTTGA+AGG | 0.539852 | 1_2:-69556477 | None:intergenic |
| AGATATTTACGAATTCGGAC+AGG | 0.548364 | 1_2:+69556312 | Msa0088470:intron |
| CAACGTGGATCCTCGTCGTA+CGG | 0.560427 | 1_2:+69556502 | Msa0088470:CDS |
| AACCGGCAAGGGTGCTACCG+TGG | 0.563938 | 1_2:-69555859 | None:intergenic |
| TCTGGTTTGATTAATTCGTA+AGG | 0.564418 | 1_2:-69556150 | None:intergenic |
| ACCGAAGATAATGCAGTCGA+AGG | 0.565357 | 1_2:-69555614 | None:intergenic |
| CTAGTGCGCGCAAACCGGCA+AGG | 0.567139 | 1_2:-69555871 | None:intergenic |
| CAAGAGGACAGGGAATTCGT+CGG | 0.575073 | 1_2:-69556438 | None:intergenic |
| TTTAAAGAGTTCAACTCTGA+GGG | 0.583777 | 1_2:-69555834 | None:intergenic |
| ACCGGCAAGGGTGCTACCGT+GGG | 0.588555 | 1_2:-69555858 | None:intergenic |
| GTTGAACTCTTTAAATCCCA+CGG | 0.595556 | 1_2:+69555842 | Msa0088470:CDS |
| GTTCTTCTTAGTTTCGTGCA+CGG | 0.597143 | 1_2:+69556120 | Msa0088470:intron |
| TTACCTGTGGTATTCTTCTG+CGG | 0.597503 | 1_2:-69555906 | None:intergenic |
| ATAATGCAGTCGAAGGGAGA+AGG | 0.598311 | 1_2:-69555607 | None:intergenic |
| ACCTTGTACCCATCCAACAC+CGG | 0.610346 | 1_2:+69555734 | Msa0088470:CDS |
| AAAGAGTTCAACTCTGAGGG+TGG | 0.612715 | 1_2:-69555831 | None:intergenic |
| GGACAGGGAATTCGTCGGGG+CGG | 0.619508 | 1_2:-69556433 | None:intergenic |
| CCGAAGATAATGCAGTCGAA+GGG | 0.620542 | 1_2:-69555613 | None:intergenic |
| ATCTTGAAGGCATCCAACGA+AGG | 0.622873 | 1_2:-69556464 | None:intergenic |
| ATTTAAAGAGTTCAACTCTG+AGG | 0.633078 | 1_2:-69555835 | None:intergenic |
| ACGAAGGTTTCAAGAGGACA+GGG | 0.645747 | 1_2:-69556448 | None:intergenic |
| TCACCGCAGAAGAATACCAC+AGG | 0.655318 | 1_2:+69555903 | Msa0088470:CDS |
| TGCGATCCAAGCTGCCAACG+TGG | 0.658698 | 1_2:+69556487 | Msa0088470:CDS |
| CATCCAACGAAGGTTTCAAG+AGG | 0.662600 | 1_2:-69556454 | None:intergenic |
| AGTTGACTCACCGTACGACG+AGG | 0.671211 | 1_2:-69556512 | None:intergenic |
| TCTTACGTTCCATCAACCAA+AGG | 0.686021 | 1_2:+69556190 | Msa0088470:CDS |
| AGAGGACAGGGAATTCGTCG+GGG | 0.686285 | 1_2:-69556436 | None:intergenic |
| CGTACGACGAGGATCCACGT+TGG | 0.778989 | 1_2:-69556501 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAAGATTAGAAAA+TGG | - | chr1_2:69556228-69556247 | None:intergenic | 10.0% |
| !! | AATAAATTAAGATTAGAAAA+TGG | - | chr1_2:69556228-69556247 | None:intergenic | 10.0% |
| !!! | CTTGAAATTACTATTATTTT+TGG | + | chr1_2:69556251-69556270 | Msa0088470:intron | 15.0% |
| !!! | TTGGTATATATTTCTAATTT+TGG | + | chr1_2:69556270-69556289 | Msa0088470:intron | 15.0% |
| !! | TGTCAAATTCTTTATAATTA+TGG | + | chr1_2:69556684-69556703 | Msa0088470:intron | 15.0% |
| !!! | CTTGAAATTACTATTATTTT+TGG | + | chr1_2:69556251-69556270 | Msa0088470:intron | 15.0% |
| !!! | TTGGTATATATTTCTAATTT+TGG | + | chr1_2:69556270-69556289 | Msa0088470:intron | 15.0% |
| !! | TGTCAAATTCTTTATAATTA+TGG | + | chr1_2:69556684-69556703 | Msa0088470:intron | 15.0% |
| !! | AATTGAAGAAGTTTGTAAAT+TGG | - | chr1_2:69555666-69555685 | None:intergenic | 20.0% |
| !! | ATTTATTGATCAAACAGATT+TGG | + | chr1_2:69555706-69555725 | Msa0088470:intron | 20.0% |
| !! | ATCATACATACTACTTAATT+TGG | - | chr1_2:69556085-69556104 | None:intergenic | 20.0% |
| !! | TTGTTAGATATTTACGAATT+CGG | + | chr1_2:69556307-69556326 | Msa0088470:intron | 20.0% |
| !!! | TTATAATTATGGTGTTGATT+TGG | + | chr1_2:69556695-69556714 | Msa0088470:intron | 20.0% |
| !! | AGTTAATTGTTAGTTAACTT+TGG | + | chr1_2:69556771-69556790 | Msa0088470:intron | 20.0% |
| !! | AATTGAAGAAGTTTGTAAAT+TGG | - | chr1_2:69555666-69555685 | None:intergenic | 20.0% |
| !! | ATTTATTGATCAAACAGATT+TGG | + | chr1_2:69555706-69555725 | Msa0088470:intron | 20.0% |
| !! | ATCATACATACTACTTAATT+TGG | - | chr1_2:69556085-69556104 | None:intergenic | 20.0% |
| !! | TTGTTAGATATTTACGAATT+CGG | + | chr1_2:69556307-69556326 | Msa0088470:intron | 20.0% |
| !!! | TTATAATTATGGTGTTGATT+TGG | + | chr1_2:69556695-69556714 | Msa0088470:intron | 20.0% |
| !! | AGTTAATTGTTAGTTAACTT+TGG | + | chr1_2:69556771-69556790 | Msa0088470:intron | 20.0% |
| !! | GAGATCAATGTTTTTCTTAA+CGG | - | chr1_2:69555771-69555790 | None:intergenic | 25.0% |
| ! | TTAAGTTTATGCCAAAATCT+CGG | - | chr1_2:69556010-69556029 | None:intergenic | 25.0% |
| !! | TTTGGAGTTGGATTAAATAA+TGG | + | chr1_2:69556789-69556808 | Msa0088470:intron | 25.0% |
| !! | GAGATCAATGTTTTTCTTAA+CGG | - | chr1_2:69555771-69555790 | None:intergenic | 25.0% |
| ! | TTAAGTTTATGCCAAAATCT+CGG | - | chr1_2:69556010-69556029 | None:intergenic | 25.0% |
| !! | TTTGGAGTTGGATTAAATAA+TGG | + | chr1_2:69556789-69556808 | Msa0088470:intron | 25.0% |
| TTTAAAGAGTTCAACTCTGA+GGG | - | chr1_2:69555837-69555856 | None:intergenic | 30.0% | |
| ATTTAAAGAGTTCAACTCTG+AGG | - | chr1_2:69555838-69555857 | None:intergenic | 30.0% | |
| AGCAAACAAACGAACAAATT+AGG | - | chr1_2:69555937-69555956 | None:intergenic | 30.0% | |
| ! | TCTGGTTTGATTAATTCGTA+AGG | - | chr1_2:69556153-69556172 | None:intergenic | 30.0% |
| ! | GAAAAAGAATTGAGTTGTTG+AGG | + | chr1_2:69556728-69556747 | Msa0088470:intron | 30.0% |
| !! | TTGTTAGTTAACTTTGGAGT+TGG | + | chr1_2:69556777-69556796 | Msa0088470:intron | 30.0% |
| TGCGACTATAACTTCATAAA+AGG | - | chr1_2:69556863-69556882 | None:intergenic | 30.0% | |
| !!! | TCTTGTTTTGCAGTTGTTTT+TGG | + | chr1_2:69556943-69556962 | Msa0088470:intron | 30.0% |
| TTTAAAGAGTTCAACTCTGA+GGG | - | chr1_2:69555837-69555856 | None:intergenic | 30.0% | |
| ATTTAAAGAGTTCAACTCTG+AGG | - | chr1_2:69555838-69555857 | None:intergenic | 30.0% | |
| AGCAAACAAACGAACAAATT+AGG | - | chr1_2:69555937-69555956 | None:intergenic | 30.0% | |
| ! | TCTGGTTTGATTAATTCGTA+AGG | - | chr1_2:69556153-69556172 | None:intergenic | 30.0% |
| ! | GAAAAAGAATTGAGTTGTTG+AGG | + | chr1_2:69556728-69556747 | Msa0088470:intron | 30.0% |
| !! | TTGTTAGTTAACTTTGGAGT+TGG | + | chr1_2:69556777-69556796 | Msa0088470:intron | 30.0% |
| TGCGACTATAACTTCATAAA+AGG | - | chr1_2:69556863-69556882 | None:intergenic | 30.0% | |
| !!! | TCTTGTTTTGCAGTTGTTTT+TGG | + | chr1_2:69556943-69556962 | Msa0088470:intron | 30.0% |
| AAACATTGATCTCTTCCTCA+TGG | + | chr1_2:69555778-69555797 | Msa0088470:CDS | 35.0% | |
| ! | AGAAACCACATTTTTCCATG+AGG | - | chr1_2:69555796-69555815 | None:intergenic | 35.0% |
| GTTGAACTCTTTAAATCCCA+CGG | + | chr1_2:69555842-69555861 | Msa0088470:CDS | 35.0% | |
| AAATTAGGCTAAGTTACCTG+TGG | - | chr1_2:69555922-69555941 | None:intergenic | 35.0% | |
| TGTTCGTTTGTTTGCTTTCA+CGG | + | chr1_2:69555941-69555960 | Msa0088470:intron | 35.0% | |
| GTGCTACACTCTATATCTTA+TGG | + | chr1_2:69555980-69555999 | Msa0088470:intron | 35.0% | |
| TCAAACCAGACATTCAGTTA+AGG | + | chr1_2:69556163-69556182 | Msa0088470:CDS | 35.0% | |
| TACAATCTTCCTTTGGTTGA+TGG | - | chr1_2:69556202-69556221 | None:intergenic | 35.0% | |
| ATGGACATACAATCTTCCTT+TGG | - | chr1_2:69556209-69556228 | None:intergenic | 35.0% | |
| AGATATTTACGAATTCGGAC+AGG | + | chr1_2:69556312-69556331 | Msa0088470:intron | 35.0% | |
| GGGTTGAATTAGGTAGATTT+GGG | - | chr1_2:69556415-69556434 | None:intergenic | 35.0% | |
| AAACATTGATCTCTTCCTCA+TGG | + | chr1_2:69555778-69555797 | Msa0088470:CDS | 35.0% | |
| ! | AGAAACCACATTTTTCCATG+AGG | - | chr1_2:69555796-69555815 | None:intergenic | 35.0% |
| GTTGAACTCTTTAAATCCCA+CGG | + | chr1_2:69555842-69555861 | Msa0088470:CDS | 35.0% | |
| AAATTAGGCTAAGTTACCTG+TGG | - | chr1_2:69555922-69555941 | None:intergenic | 35.0% | |
| TGTTCGTTTGTTTGCTTTCA+CGG | + | chr1_2:69555941-69555960 | Msa0088470:intron | 35.0% | |
| GTGCTACACTCTATATCTTA+TGG | + | chr1_2:69555980-69555999 | Msa0088470:intron | 35.0% | |
| TCAAACCAGACATTCAGTTA+AGG | + | chr1_2:69556163-69556182 | Msa0088470:CDS | 35.0% | |
| TACAATCTTCCTTTGGTTGA+TGG | - | chr1_2:69556202-69556221 | None:intergenic | 35.0% | |
| ATGGACATACAATCTTCCTT+TGG | - | chr1_2:69556209-69556228 | None:intergenic | 35.0% | |
| AGATATTTACGAATTCGGAC+AGG | + | chr1_2:69556312-69556331 | Msa0088470:intron | 35.0% | |
| GGGTTGAATTAGGTAGATTT+GGG | - | chr1_2:69556415-69556434 | None:intergenic | 35.0% | |
| CTCTTCCTCATGGAAAAATG+TGG | + | chr1_2:69555788-69555807 | Msa0088470:CDS | 40.0% | |
| TTACCTGTGGTATTCTTCTG+CGG | - | chr1_2:69555909-69555928 | None:intergenic | 40.0% | |
| ! | CTTATGGATCACCGAGATTT+TGG | + | chr1_2:69555996-69556015 | Msa0088470:intron | 40.0% |
| GTTCTTCTTAGTTTCGTGCA+CGG | + | chr1_2:69556120-69556139 | Msa0088470:intron | 40.0% | |
| AGGTTCCTTAACTGAATGTC+TGG | - | chr1_2:69556171-69556190 | None:intergenic | 40.0% | |
| !! | TTTGGTTGATGGAACGTAAG+AGG | - | chr1_2:69556191-69556210 | None:intergenic | 40.0% |
| TCTTACGTTCCATCAACCAA+AGG | + | chr1_2:69556190-69556209 | Msa0088470:CDS | 40.0% | |
| ! | CGGGTTGAATTAGGTAGATT+TGG | - | chr1_2:69556416-69556435 | None:intergenic | 40.0% |
| CTCTTCCTCATGGAAAAATG+TGG | + | chr1_2:69555788-69555807 | Msa0088470:CDS | 40.0% | |
| TTACCTGTGGTATTCTTCTG+CGG | - | chr1_2:69555909-69555928 | None:intergenic | 40.0% | |
| ! | CTTATGGATCACCGAGATTT+TGG | + | chr1_2:69555996-69556015 | Msa0088470:intron | 40.0% |
| GTTCTTCTTAGTTTCGTGCA+CGG | + | chr1_2:69556120-69556139 | Msa0088470:intron | 40.0% | |
| AGGTTCCTTAACTGAATGTC+TGG | - | chr1_2:69556171-69556190 | None:intergenic | 40.0% | |
| !! | TTTGGTTGATGGAACGTAAG+AGG | - | chr1_2:69556191-69556210 | None:intergenic | 40.0% |
| TCTTACGTTCCATCAACCAA+AGG | + | chr1_2:69556190-69556209 | Msa0088470:CDS | 40.0% | |
| ! | CGGGTTGAATTAGGTAGATT+TGG | - | chr1_2:69556416-69556435 | None:intergenic | 40.0% |
| ATAATGCAGTCGAAGGGAGA+AGG | - | chr1_2:69555610-69555629 | None:intergenic | 45.0% | |
| CCGAAGATAATGCAGTCGAA+GGG | - | chr1_2:69555616-69555635 | None:intergenic | 45.0% | |
| CCCTTCGACTGCATTATCTT+CGG | + | chr1_2:69555613-69555632 | Msa0088470:CDS | 45.0% | |
| ACCGAAGATAATGCAGTCGA+AGG | - | chr1_2:69555617-69555636 | None:intergenic | 45.0% | |
| ! | AAAGAGTTCAACTCTGAGGG+TGG | - | chr1_2:69555834-69555853 | None:intergenic | 45.0% |
| TCGTTTGTTTGCTTTCACGG+TGG | + | chr1_2:69555944-69555963 | Msa0088470:intron | 45.0% | |
| TTCTTAGTTTCGTGCACGGA+AGG | + | chr1_2:69556124-69556143 | Msa0088470:intron | 45.0% | |
| GATTCATGCACTTACAGCGT+TGG | + | chr1_2:69556334-69556353 | Msa0088470:CDS | 45.0% | |
| ACGAAGGTTTCAAGAGGACA+GGG | - | chr1_2:69556451-69556470 | None:intergenic | 45.0% | |
| AACGAAGGTTTCAAGAGGAC+AGG | - | chr1_2:69556452-69556471 | None:intergenic | 45.0% | |
| TGTCCTCTTGAAACCTTCGT+TGG | + | chr1_2:69556451-69556470 | Msa0088470:CDS | 45.0% | |
| CATCCAACGAAGGTTTCAAG+AGG | - | chr1_2:69556457-69556476 | None:intergenic | 45.0% | |
| !! | ATCTTGAAGGCATCCAACGA+AGG | - | chr1_2:69556467-69556486 | None:intergenic | 45.0% |
| AGCTTGGATCGCAATCTTGA+AGG | - | chr1_2:69556480-69556499 | None:intergenic | 45.0% | |
| AGTCGTAACGACTTGTCGAA+TGG | + | chr1_2:69556544-69556563 | Msa0088470:intron | 45.0% | |
| ATAATGCAGTCGAAGGGAGA+AGG | - | chr1_2:69555610-69555629 | None:intergenic | 45.0% | |
| CCGAAGATAATGCAGTCGAA+GGG | - | chr1_2:69555616-69555635 | None:intergenic | 45.0% | |
| CCCTTCGACTGCATTATCTT+CGG | + | chr1_2:69555613-69555632 | Msa0088470:CDS | 45.0% | |
| ACCGAAGATAATGCAGTCGA+AGG | - | chr1_2:69555617-69555636 | None:intergenic | 45.0% | |
| ! | AAAGAGTTCAACTCTGAGGG+TGG | - | chr1_2:69555834-69555853 | None:intergenic | 45.0% |
| TCGTTTGTTTGCTTTCACGG+TGG | + | chr1_2:69555944-69555963 | Msa0088470:intron | 45.0% | |
| TTCTTAGTTTCGTGCACGGA+AGG | + | chr1_2:69556124-69556143 | Msa0088470:intron | 45.0% | |
| GATTCATGCACTTACAGCGT+TGG | + | chr1_2:69556334-69556353 | Msa0088470:CDS | 45.0% | |
| ACGAAGGTTTCAAGAGGACA+GGG | - | chr1_2:69556451-69556470 | None:intergenic | 45.0% | |
| AACGAAGGTTTCAAGAGGAC+AGG | - | chr1_2:69556452-69556471 | None:intergenic | 45.0% | |
| TGTCCTCTTGAAACCTTCGT+TGG | + | chr1_2:69556451-69556470 | Msa0088470:CDS | 45.0% | |
| CATCCAACGAAGGTTTCAAG+AGG | - | chr1_2:69556457-69556476 | None:intergenic | 45.0% | |
| !! | ATCTTGAAGGCATCCAACGA+AGG | - | chr1_2:69556467-69556486 | None:intergenic | 45.0% |
| AGCTTGGATCGCAATCTTGA+AGG | - | chr1_2:69556480-69556499 | None:intergenic | 45.0% | |
| AGTCGTAACGACTTGTCGAA+TGG | + | chr1_2:69556544-69556563 | Msa0088470:intron | 45.0% | |
| !! | TAAACTATTATTAAAAAAAA+TGG | + | chr1_2:69556814-69556833 | Msa0088470:intron | 5.0% |
| !! | TAAACTATTATTAAAAAAAA+TGG | + | chr1_2:69556814-69556833 | Msa0088470:intron | 5.0% |
| ACCTTGTACCCATCCAACAC+CGG | + | chr1_2:69555734-69555753 | Msa0088470:CDS | 50.0% | |
| TACCCATCCAACACCGGAAT+CGG | + | chr1_2:69555740-69555759 | Msa0088470:CDS | 50.0% | |
| ! | AACTCTGAGGGTGGAAGCTT+TGG | - | chr1_2:69555825-69555844 | None:intergenic | 50.0% |
| TCACCGCAGAAGAATACCAC+AGG | + | chr1_2:69555903-69555922 | Msa0088470:CDS | 50.0% | |
| ! | ATGCACTTACAGCGTTGGAC+AGG | + | chr1_2:69556339-69556358 | Msa0088470:CDS | 50.0% |
| ! | TTACAGCGTTGGACAGGCTT+GGG | + | chr1_2:69556345-69556364 | Msa0088470:CDS | 50.0% |
| AAGAGGACAGGGAATTCGTC+GGG | - | chr1_2:69556440-69556459 | None:intergenic | 50.0% | |
| CAAGAGGACAGGGAATTCGT+CGG | - | chr1_2:69556441-69556460 | None:intergenic | 50.0% | |
| CGTAACGACTTGTCGAATGG+TGG | + | chr1_2:69556547-69556566 | Msa0088470:intron | 50.0% | |
| ACCTTGTACCCATCCAACAC+CGG | + | chr1_2:69555734-69555753 | Msa0088470:CDS | 50.0% | |
| TACCCATCCAACACCGGAAT+CGG | + | chr1_2:69555740-69555759 | Msa0088470:CDS | 50.0% | |
| ! | AACTCTGAGGGTGGAAGCTT+TGG | - | chr1_2:69555825-69555844 | None:intergenic | 50.0% |
| TCACCGCAGAAGAATACCAC+AGG | + | chr1_2:69555903-69555922 | Msa0088470:CDS | 50.0% | |
| ! | ATGCACTTACAGCGTTGGAC+AGG | + | chr1_2:69556339-69556358 | Msa0088470:CDS | 50.0% |
| ! | TTACAGCGTTGGACAGGCTT+GGG | + | chr1_2:69556345-69556364 | Msa0088470:CDS | 50.0% |
| AAGAGGACAGGGAATTCGTC+GGG | - | chr1_2:69556440-69556459 | None:intergenic | 50.0% | |
| CAAGAGGACAGGGAATTCGT+CGG | - | chr1_2:69556441-69556460 | None:intergenic | 50.0% | |
| CGTAACGACTTGTCGAATGG+TGG | + | chr1_2:69556547-69556566 | Msa0088470:intron | 50.0% | |
| ! | TCCGGTGTTGGATGGGTACA+AGG | - | chr1_2:69555738-69555757 | None:intergenic | 55.0% |
| ! | CTCCGATTCCGGTGTTGGAT+GGG | - | chr1_2:69555745-69555764 | None:intergenic | 55.0% |
| CTTAACGGCAGCTCCGATTC+CGG | - | chr1_2:69555756-69555775 | None:intergenic | 55.0% | |
| ATAGCCTAGTGCGCGCAAAC+CGG | - | chr1_2:69555879-69555898 | None:intergenic | 55.0% | |
| ! | CTTACAGCGTTGGACAGGCT+TGG | + | chr1_2:69556344-69556363 | Msa0088470:CDS | 55.0% |
| AGAGGACAGGGAATTCGTCG+GGG | - | chr1_2:69556439-69556458 | None:intergenic | 55.0% | |
| CAACGTGGATCCTCGTCGTA+CGG | + | chr1_2:69556502-69556521 | Msa0088470:CDS | 55.0% | |
| ! | AGTTGACTCACCGTACGACG+AGG | - | chr1_2:69556515-69556534 | None:intergenic | 55.0% |
| ! | TCCGGTGTTGGATGGGTACA+AGG | - | chr1_2:69555738-69555757 | None:intergenic | 55.0% |
| ! | CTCCGATTCCGGTGTTGGAT+GGG | - | chr1_2:69555745-69555764 | None:intergenic | 55.0% |
| CTTAACGGCAGCTCCGATTC+CGG | - | chr1_2:69555756-69555775 | None:intergenic | 55.0% | |
| ATAGCCTAGTGCGCGCAAAC+CGG | - | chr1_2:69555879-69555898 | None:intergenic | 55.0% | |
| ! | CTTACAGCGTTGGACAGGCT+TGG | + | chr1_2:69556344-69556363 | Msa0088470:CDS | 55.0% |
| AGAGGACAGGGAATTCGTCG+GGG | - | chr1_2:69556439-69556458 | None:intergenic | 55.0% | |
| CAACGTGGATCCTCGTCGTA+CGG | + | chr1_2:69556502-69556521 | Msa0088470:CDS | 55.0% | |
| ! | AGTTGACTCACCGTACGACG+AGG | - | chr1_2:69556515-69556534 | None:intergenic | 55.0% |
| ! | GCTCCGATTCCGGTGTTGGA+TGG | - | chr1_2:69555746-69555765 | None:intergenic | 60.0% |
| TAGTGCGCGCAAACCGGCAA+GGG | - | chr1_2:69555873-69555892 | None:intergenic | 60.0% | |
| !! | TCGTCGGGGCGGGTTGAATT+AGG | - | chr1_2:69556425-69556444 | None:intergenic | 60.0% |
| TGCGATCCAAGCTGCCAACG+TGG | + | chr1_2:69556487-69556506 | Msa0088470:CDS | 60.0% | |
| GAGGATCCACGTTGGCAGCT+TGG | - | chr1_2:69556496-69556515 | None:intergenic | 60.0% | |
| CGTACGACGAGGATCCACGT+TGG | - | chr1_2:69556504-69556523 | None:intergenic | 60.0% | |
| ! | GCTCCGATTCCGGTGTTGGA+TGG | - | chr1_2:69555746-69555765 | None:intergenic | 60.0% |
| TAGTGCGCGCAAACCGGCAA+GGG | - | chr1_2:69555873-69555892 | None:intergenic | 60.0% | |
| !! | TCGTCGGGGCGGGTTGAATT+AGG | - | chr1_2:69556425-69556444 | None:intergenic | 60.0% |
| TGCGATCCAAGCTGCCAACG+TGG | + | chr1_2:69556487-69556506 | Msa0088470:CDS | 60.0% | |
| GAGGATCCACGTTGGCAGCT+TGG | - | chr1_2:69556496-69556515 | None:intergenic | 60.0% | |
| CGTACGACGAGGATCCACGT+TGG | - | chr1_2:69556504-69556523 | None:intergenic | 60.0% | |
| GGCAGCTCCGATTCCGGTGT+TGG | - | chr1_2:69555750-69555769 | None:intergenic | 65.0% | |
| TCCCACGGTAGCACCCTTGC+CGG | + | chr1_2:69555857-69555876 | Msa0088470:CDS | 65.0% | |
| !! | ACCGGCAAGGGTGCTACCGT+GGG | - | chr1_2:69555861-69555880 | None:intergenic | 65.0% |
| !! | AACCGGCAAGGGTGCTACCG+TGG | - | chr1_2:69555862-69555881 | None:intergenic | 65.0% |
| CTAGTGCGCGCAAACCGGCA+AGG | - | chr1_2:69555874-69555893 | None:intergenic | 65.0% | |
| !! | CTTGCCGGTTTGCGCGCACT+AGG | + | chr1_2:69555872-69555891 | Msa0088470:CDS | 65.0% |
| GACAGGGAATTCGTCGGGGC+GGG | - | chr1_2:69556435-69556454 | None:intergenic | 65.0% | |
| GGACAGGGAATTCGTCGGGG+CGG | - | chr1_2:69556436-69556455 | None:intergenic | 65.0% | |
| GGCAGCTCCGATTCCGGTGT+TGG | - | chr1_2:69555750-69555769 | None:intergenic | 65.0% | |
| TCCCACGGTAGCACCCTTGC+CGG | + | chr1_2:69555857-69555876 | Msa0088470:CDS | 65.0% | |
| !! | ACCGGCAAGGGTGCTACCGT+GGG | - | chr1_2:69555861-69555880 | None:intergenic | 65.0% |
| !! | AACCGGCAAGGGTGCTACCG+TGG | - | chr1_2:69555862-69555881 | None:intergenic | 65.0% |
| CTAGTGCGCGCAAACCGGCA+AGG | - | chr1_2:69555874-69555893 | None:intergenic | 65.0% | |
| !! | CTTGCCGGTTTGCGCGCACT+AGG | + | chr1_2:69555872-69555891 | Msa0088470:CDS | 65.0% |
| GACAGGGAATTCGTCGGGGC+GGG | - | chr1_2:69556435-69556454 | None:intergenic | 65.0% | |
| GGACAGGGAATTCGTCGGGG+CGG | - | chr1_2:69556436-69556455 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 69555589 | 69556969 | 69555589 | ID=Msa0088470;Name=Msa0088470 |
| chr1_2 | mRNA | 69555589 | 69556969 | 69555589 | ID=Msa0088470-mRNA-1;Parent=Msa0088470;Name=Msa0088470-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|0.8|0.75|0.6|5|0|187 |
| chr1_2 | exon | 69555589 | 69555634 | 69555589 | ID=Msa0088470-mRNA-1:exon:23865;Parent=Msa0088470-mRNA-1 |
| chr1_2 | exon | 69555723 | 69555924 | 69555723 | ID=Msa0088470-mRNA-1:exon:23866;Parent=Msa0088470-mRNA-1 |
| chr1_2 | exon | 69556131 | 69556218 | 69556131 | ID=Msa0088470-mRNA-1:exon:23867;Parent=Msa0088470-mRNA-1 |
| chr1_2 | exon | 69556314 | 69556527 | 69556314 | ID=Msa0088470-mRNA-1:exon:23868;Parent=Msa0088470-mRNA-1 |
| chr1_2 | exon | 69556956 | 69556969 | 69556956 | ID=Msa0088470-mRNA-1:exon:23869;Parent=Msa0088470-mRNA-1 |
| chr1_2 | CDS | 69555589 | 69555634 | 69555589 | ID=Msa0088470-mRNA-1:cds;Parent=Msa0088470-mRNA-1 |
| chr1_2 | CDS | 69555723 | 69555924 | 69555723 | ID=Msa0088470-mRNA-1:cds;Parent=Msa0088470-mRNA-1 |
| chr1_2 | CDS | 69556131 | 69556218 | 69556131 | ID=Msa0088470-mRNA-1:cds;Parent=Msa0088470-mRNA-1 |
| chr1_2 | CDS | 69556314 | 69556527 | 69556314 | ID=Msa0088470-mRNA-1:cds;Parent=Msa0088470-mRNA-1 |
| chr1_2 | CDS | 69556956 | 69556969 | 69556956 | ID=Msa0088470-mRNA-1:cds;Parent=Msa0088470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
