AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0258700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258700 MtrunA17_Chr2g0321241 98.726 314 4 0 1 314 1 314 0.0 639
Msa0258700 MtrunA17_Chr4g0026631 92.038 314 20 1 1 314 1 309 0.0 580
Msa0258700 MtrunA17_Chr4g0052271 50.000 264 110 4 71 312 37 300 8.83e-82 253
Msa0258700 MtrunA17_Chr4g0004121 50.000 248 100 4 76 312 195 429 3.05e-78 248
Msa0258700 MtrunA17_Chr2g0297851 71.812 149 32 2 1 149 1 139 1.78e-67 212
Msa0258700 MtrunA17_Chr2g0297851 77.165 127 24 1 5 131 125 246 4.59e-58 188
Msa0258700 MtrunA17_Chr7g0246111 53.695 203 89 3 106 307 189 387 7.83e-67 218
Msa0258700 MtrunA17_Chr6g0459561 50.242 207 98 1 106 307 351 557 5.72e-64 213
Msa0258700 MtrunA17_Chr6g0459541 51.220 205 90 3 106 302 11 213 3.79e-63 203
Msa0258700 MtrunA17_Chr6g0459551 47.368 209 97 3 106 307 71 273 1.03e-56 189
Msa0258700 MtrunA17_Chr1g0202381 37.762 286 156 5 42 313 375 652 1.49e-53 187
Msa0258700 MtrunA17_Chr4g0038101 48.370 184 92 2 132 312 721 904 3.43e-53 187
Msa0258700 MtrunA17_Chr8g0387641 47.027 185 96 2 131 313 520 704 8.88e-52 182
Msa0258700 MtrunA17_Chr6g0462581 48.649 185 91 3 132 313 500 683 1.31e-50 179
Msa0258700 MtrunA17_Chr5g0397121 39.921 253 144 4 66 313 447 696 1.51e-50 179
Msa0258700 MtrunA17_Chr1g0195731 46.486 185 96 2 132 313 934 1118 5.84e-50 178
Msa0258700 MtrunA17_Chr3g0116131 46.196 184 96 2 132 312 902 1085 6.55e-49 175
Msa0258700 MtrunA17_Chr1g0204031 44.324 185 100 2 132 313 557 741 1.88e-48 173
Msa0258700 MtrunA17_Chr1g0195741 45.405 185 98 2 132 313 938 1122 3.70e-48 173
Msa0258700 MtrunA17_Chr1g0202371 44.865 185 98 3 132 313 397 580 9.44e-47 167
Msa0258700 MtrunA17_Chr2g0327121 43.523 193 103 4 126 313 474 665 2.27e-45 164
Msa0258700 MtrunA17_Chr2g0327121 40.314 191 107 5 132 318 207 394 8.33e-36 137
Msa0258700 MtrunA17_Chr1g0180791 44.041 193 102 4 126 313 472 663 2.86e-45 164
Msa0258700 MtrunA17_Chr1g0180791 40.526 190 108 4 132 318 205 392 8.33e-37 140
Msa0258700 MtrunA17_Chr7g0264521 43.523 193 103 4 126 313 473 664 5.08e-45 163
Msa0258700 MtrunA17_Chr7g0264521 40.299 201 111 5 125 318 195 393 8.16e-37 140
Msa0258700 MtrunA17_Chr3g0127401 43.548 186 101 3 131 313 80 264 1.91e-44 156
Msa0258700 MtrunA17_Chr3g0127431 43.011 186 102 3 131 313 83 267 1.29e-43 154
Msa0258700 MtrunA17_Chr4g0050561 40.976 205 112 5 121 318 145 347 3.76e-41 148
Msa0258700 MtrunA17_Chr7g0255901 40.957 188 107 3 130 313 637 824 2.30e-40 150
Msa0258700 MtrunA17_Chr6g0459531 39.037 187 87 2 121 307 56 215 2.57e-40 143
Msa0258700 MtrunA17_Chr3g0108321 41.451 193 105 5 128 314 155 345 4.43e-40 144
Msa0258700 MtrunA17_Chr8g0345461 37.963 216 120 6 112 318 145 355 2.52e-39 143
Msa0258700 MtrunA17_Chr7g0255641 41.148 209 116 5 110 312 634 841 2.93e-39 147
Msa0258700 MtrunA17_Chr7g0255641 38.994 159 84 6 156 312 425 572 1.16e-22 99.0
Msa0258700 MtrunA17_Chr1g0200081 37.963 216 120 6 112 318 155 365 3.42e-39 143
Msa0258700 MtrunA17_Chr7g0255651 39.394 198 114 4 121 313 271 467 3.55e-39 145
Msa0258700 MtrunA17_Chr7g0255651 28.977 176 112 6 145 312 30 200 7.46e-13 69.3
Msa0258700 MtrunA17_Chr7g0255721 41.827 208 114 5 110 311 661 867 7.07e-39 146
Msa0258700 MtrunA17_Chr7g0255721 40.816 147 83 3 169 313 422 566 2.89e-25 106
Msa0258700 MtrunA17_Chr3g0145011 40.201 199 108 7 125 315 131 326 2.02e-38 140
Msa0258700 MtrunA17_Chr7g0217421 40.887 203 109 7 121 315 26 225 2.70e-38 140
Msa0258700 MtrunA17_Chr2g0277831 41.579 190 104 5 130 315 531 717 4.79e-38 143
Msa0258700 MtrunA17_Chr2g0277831 36.216 185 108 5 134 311 245 426 3.58e-29 117
Msa0258700 MtrunA17_Chr3g0141901 39.698 199 109 7 125 315 128 323 5.80e-38 139
Msa0258700 MtrunA17_Chr4g0014731 38.384 198 116 4 126 318 162 358 1.03e-37 139
Msa0258700 MtrunA17_Chr1g0192151 38.384 198 116 4 126 318 161 357 1.08e-37 139
Msa0258700 MtrunA17_Chr7g0255691 41.379 203 113 4 121 318 275 476 1.51e-37 140
Msa0258700 MtrunA17_Chr7g0255691 33.333 189 107 6 137 312 22 204 6.39e-20 90.5
Msa0258700 MtrunA17_Chr2g0327231 42.442 172 94 4 122 289 335 505 1.65e-37 140
Msa0258700 MtrunA17_Chr2g0327231 32.086 187 110 7 132 317 153 323 1.68e-11 65.1
Msa0258700 MtrunA17_Chr8g0362771 39.894 188 106 5 131 314 236 420 1.19e-36 139
Msa0258700 MtrunA17_Chr4g0052411 43.137 204 105 7 120 315 215 415 2.56e-36 138
Msa0258700 MtrunA17_Chr7g0262801 38.191 199 115 5 126 318 181 377 6.17e-36 134
Msa0258700 MtrunA17_Chr3g0086411 39.691 194 106 5 130 317 213 401 7.13e-36 135
Msa0258700 MtrunA17_Chr3g0086411 39.604 101 52 3 219 311 7 106 7.11e-13 68.9
Msa0258700 MtrunA17_Chr1g0182711 37.688 199 116 5 126 318 182 378 1.03e-35 134
Msa0258700 MtrunA17_Chr2g0297281 43.299 194 99 7 129 314 281 471 1.63e-35 136
Msa0258700 MtrunA17_Chr4g0031821 43.750 192 96 6 129 312 317 504 1.67e-34 133
Msa0258700 MtrunA17_Chr7g0260601 42.708 192 98 6 129 312 237 424 5.88e-34 131
Msa0258700 MtrunA17_Chr7g0248361 43.386 189 95 6 132 312 192 376 1.16e-33 130
Msa0258700 MtrunA17_Chr6g0476861 43.386 189 95 6 132 312 197 381 2.16e-33 129
Msa0258700 MtrunA17_Chr3g0086401 38.095 189 112 4 130 315 383 569 8.23e-33 128
Msa0258700 MtrunA17_Chr3g0086401 40.260 154 80 5 166 311 128 277 1.26e-24 104
Msa0258700 MtrunA17_Chr3g0135761 37.766 188 109 6 131 314 221 404 8.75e-33 128
Msa0258700 MtrunA17_Chr3g0143721 41.579 190 102 6 132 315 249 435 2.85e-32 126
Msa0258700 MtrunA17_Chr3g0094871 42.328 189 98 6 131 312 10 194 6.94e-32 123
Msa0258700 MtrunA17_Chr3g0135721 36.898 187 110 6 131 313 223 405 7.72e-32 125
Msa0258700 MtrunA17_Chr6g0456351 39.394 198 107 7 122 311 304 496 8.53e-32 125
Msa0258700 MtrunA17_Chr5g0432631 37.766 188 109 6 131 314 228 411 9.28e-32 125
Msa0258700 MtrunA17_Chr4g0033451 39.153 189 105 5 131 311 379 565 3.51e-31 124
Msa0258700 MtrunA17_Chr1g0158881 41.206 199 102 9 121 312 318 508 5.36e-31 123
Msa0258700 MtrunA17_Chr5g0429571 39.583 192 106 4 131 315 312 500 7.35e-30 119
Msa0258700 MtrunA17_Chr2g0331161 40.306 196 98 6 131 315 414 601 1.36e-29 119
Msa0258700 MtrunA17_Chr2g0316851 37.245 196 108 7 134 321 596 784 1.81e-29 119
Msa0258700 MtrunA17_Chr2g0289231 36.139 202 115 6 120 310 285 483 2.10e-29 118
Msa0258700 MtrunA17_Chr3g0104211 41.361 191 104 6 131 315 303 491 2.44e-29 118
Msa0258700 MtrunA17_Chr3g0135781 39.877 163 92 5 131 291 54 212 8.98e-29 110
Msa0258700 MtrunA17_Chr4g0043381 34.807 181 113 4 134 311 839 1017 1.05e-27 113
Msa0258700 MtrunA17_Chr3g0129971 38.647 207 120 3 116 317 282 486 1.45e-26 110
Msa0258700 MtrunA17_Chr5g0432641 33.333 186 116 6 131 312 190 371 6.05e-24 102
Msa0258700 MtrunA17_Chr8g0388371 33.846 195 112 6 132 312 404 595 9.63e-23 99.0
Msa0258700 MtrunA17_Chr1g0190401 30.698 215 135 8 108 315 657 864 1.61e-18 86.7
Msa0258700 MtrunA17_Chr3g0116941 33.951 162 89 4 169 313 197 357 7.33e-18 84.0
Msa0258700 MtrunA17_Chr5g0404291 28.947 190 130 3 114 302 334 519 2.91e-16 79.3
Msa0258700 MtrunA17_Chr1g0168321 43.137 102 52 3 216 312 211 311 1.92e-15 77.0
Msa0258700 MtrunA17_Chr8g0357301 30.952 168 101 5 159 315 497 660 3.46e-15 76.6
Msa0258700 MtrunA17_Chr6g0450161 29.936 157 105 3 167 322 362 514 7.43e-14 72.0
Msa0258700 MtrunA17_Chr4g0039781 29.936 157 105 3 167 322 368 520 1.24e-13 71.6
Msa0258700 MtrunA17_Chr5g0432391 32.174 115 74 3 209 321 81 193 6.67e-12 65.9
Msa0258700 MtrunA17_Chr4g0062081 40.506 79 45 2 135 211 10 88 8.95e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258700 AT2G27600.1 91.720 314 23 1 1 314 1 311 0.0 575
Msa0258700 AT2G34560.1 56.098 205 88 2 110 312 78 282 1.13e-76 240
Msa0258700 AT2G34560.2 56.098 205 88 2 110 312 87 291 1.73e-76 239
Msa0258700 AT1G80350.1 51.754 228 100 3 93 311 196 422 5.13e-76 242
Msa0258700 AT2G45500.4 49.576 236 113 3 80 314 32 262 2.40e-71 225
Msa0258700 AT2G45500.3 49.576 236 113 3 80 314 32 262 2.40e-71 225
Msa0258700 AT2G45500.1 49.576 236 113 3 80 314 169 399 1.05e-69 225
Msa0258700 AT2G45500.2 49.576 236 113 3 80 314 165 395 1.20e-69 224
Msa0258700 AT2G45500.5 49.576 236 113 3 80 314 175 405 1.22e-69 225
Msa0258700 AT3G27120.1 49.275 207 100 1 106 307 369 575 2.44e-62 210
Msa0258700 AT1G08270.1 75.758 132 22 1 33 164 1 122 3.72e-62 194
Msa0258700 AT1G08270.2 74.242 132 24 1 33 164 1 122 1.11e-60 190
Msa0258700 AT1G50140.2 50.000 184 89 2 132 312 689 872 3.28e-52 185
Msa0258700 AT1G50140.5 50.000 184 89 2 132 312 689 872 3.28e-52 185
Msa0258700 AT3G19740.1 49.457 184 90 2 132 312 701 884 3.56e-52 185
Msa0258700 AT1G50140.3 50.000 184 89 2 132 312 711 894 3.89e-52 184
Msa0258700 AT1G50140.1 50.000 184 89 2 132 312 711 894 3.89e-52 184
Msa0258700 AT1G50140.4 50.000 184 89 2 132 312 711 894 3.89e-52 184
Msa0258700 AT1G64110.1 46.809 188 98 2 128 313 509 696 2.90e-51 181
Msa0258700 AT1G64110.5 46.809 188 98 2 128 313 512 699 3.36e-51 181
Msa0258700 AT1G64110.3 46.809 188 98 2 128 313 512 699 3.36e-51 181
Msa0258700 AT1G64110.2 46.809 188 98 2 128 313 514 701 3.53e-51 181
Msa0258700 AT1G64110.4 46.809 188 98 2 128 313 514 701 3.53e-51 181
Msa0258700 AT4G28000.3 46.196 184 97 2 132 313 517 700 1.24e-50 179
Msa0258700 AT4G28000.1 46.196 184 97 2 132 313 515 698 1.82e-50 179
Msa0258700 AT4G28000.2 46.196 184 97 2 132 313 517 700 1.87e-50 179
Msa0258700 AT5G52882.1 46.196 184 97 2 132 313 514 697 6.21e-50 177
Msa0258700 AT4G24860.4 44.388 196 106 2 121 313 779 974 9.67e-50 178
Msa0258700 AT4G24860.2 44.388 196 106 2 121 313 802 997 1.15e-49 177
Msa0258700 AT4G24860.1 44.388 196 106 2 121 313 806 1001 1.16e-49 177
Msa0258700 AT4G24860.3 44.388 196 106 2 121 313 804 999 1.19e-49 177
Msa0258700 AT4G02480.1 46.448 183 95 2 132 311 960 1142 1.39e-48 174
Msa0258700 AT1G02890.1 46.739 184 93 3 132 311 941 1123 6.07e-48 173
Msa0258700 AT5G53540.1 46.237 186 96 4 131 313 83 267 1.81e-47 164
Msa0258700 AT5G03340.1 44.041 193 102 4 126 313 471 662 5.11e-46 166
Msa0258700 AT5G03340.1 40.526 190 108 4 132 318 204 391 1.64e-36 139
Msa0258700 AT3G53230.1 44.041 193 102 4 126 313 472 663 8.69e-46 166
Msa0258700 AT3G53230.1 40.526 190 108 4 132 318 205 392 1.41e-36 139
Msa0258700 AT4G27680.1 44.624 186 99 4 131 313 80 264 4.00e-44 155
Msa0258700 AT3G09840.1 43.814 194 102 4 126 313 471 663 4.57e-44 161
Msa0258700 AT3G09840.1 40.314 191 109 4 131 318 203 391 1.08e-36 140
Msa0258700 AT2G03670.1 43.415 205 109 4 120 318 271 474 1.61e-41 152
Msa0258700 AT2G03670.1 36.082 194 110 6 131 312 15 206 7.45e-26 108
Msa0258700 AT5G19990.2 40.284 211 117 5 115 318 83 291 1.05e-40 145
Msa0258700 AT5G19990.1 40.976 205 112 5 121 318 147 349 2.23e-40 146
Msa0258700 AT5G19990.3 40.976 205 112 5 121 318 147 349 2.23e-40 146
Msa0258700 AT1G03000.1 40.426 188 108 3 130 313 653 840 2.53e-40 150
Msa0258700 AT5G20000.1 40.976 205 112 5 121 318 147 349 2.58e-40 146
Msa0258700 AT3G56690.1 43.128 211 109 6 110 312 697 904 2.96e-39 147
Msa0258700 AT3G56690.1 37.838 148 88 3 166 311 416 561 4.58e-27 112
Msa0258700 AT1G53750.1 37.963 216 120 6 112 318 145 355 5.95e-39 142
Msa0258700 AT5G43010.1 40.102 197 111 6 125 315 128 323 6.58e-39 142
Msa0258700 AT5G58290.1 40.625 192 106 5 128 313 148 337 1.49e-38 141
Msa0258700 AT1G45000.1 40.201 199 108 7 125 315 128 323 2.70e-38 140
Msa0258700 AT3G05530.1 38.889 198 115 4 126 318 162 358 3.84e-38 140
Msa0258700 AT1G06430.1 42.995 207 107 7 117 315 200 403 6.72e-37 140
Msa0258700 AT1G06430.3 42.995 207 107 7 117 315 200 403 6.72e-37 140
Msa0258700 AT1G06430.2 42.995 207 107 7 117 315 200 403 6.72e-37 140
Msa0258700 AT2G20140.1 38.693 199 114 5 126 318 179 375 7.95e-37 137
Msa0258700 AT4G29040.1 38.693 199 114 5 126 318 179 375 1.21e-36 137
Msa0258700 AT1G09100.1 38.384 198 116 4 126 318 161 357 1.45e-36 136
Msa0258700 AT2G30950.1 42.995 207 107 7 117 315 207 410 1.50e-36 139
Msa0258700 AT2G30950.2 42.995 207 107 7 117 315 207 410 1.50e-36 139
Msa0258700 AT2G30950.3 42.995 207 107 7 117 315 207 410 1.50e-36 139
Msa0258700 AT2G30950.4 42.995 207 107 7 117 315 211 414 1.55e-36 139
Msa0258700 AT1G62130.2 38.378 185 99 4 132 313 743 915 1.12e-35 137
Msa0258700 AT1G62130.1 38.378 185 99 4 132 313 750 922 1.24e-35 137
Msa0258700 AT1G53780.1 36.111 216 124 6 112 318 317 527 4.23e-35 134
Msa0258700 AT1G53780.4 36.111 216 124 6 112 318 317 527 4.23e-35 134
Msa0258700 AT1G53780.2 36.111 216 124 6 112 318 338 548 4.60e-35 134
Msa0258700 AT1G53780.3 36.111 216 124 6 112 318 316 526 4.92e-35 134
Msa0258700 AT1G07510.1 42.857 203 104 6 118 312 310 508 7.73e-35 134
Msa0258700 AT3G02450.1 40.741 189 102 6 128 311 327 510 3.78e-34 132
Msa0258700 AT5G15250.1 38.350 206 116 7 120 317 207 409 3.95e-33 129
Msa0258700 AT2G29080.1 43.781 201 104 6 118 312 305 502 5.87e-33 129
Msa0258700 AT5G42270.1 42.105 190 101 6 132 315 247 433 8.13e-33 128
Msa0258700 AT1G50250.1 41.579 190 102 6 132 315 259 445 3.28e-32 127
Msa0258700 AT2G26140.1 37.433 187 109 6 131 313 223 405 7.54e-32 125
Msa0258700 AT5G53170.1 40.404 198 105 7 121 312 348 538 2.77e-31 124
Msa0258700 AT3G01610.1 38.144 194 107 4 134 315 232 424 3.72e-31 124
Msa0258700 AT3G01610.1 39.474 190 107 5 130 315 523 708 5.33e-31 123
Msa0258700 AT3G15120.2 37.912 182 103 5 134 307 728 907 3.78e-31 124
Msa0258700 AT3G15120.1 37.912 182 103 5 134 307 718 897 3.81e-31 124
Msa0258700 AT1G02890.2 38.043 184 81 4 132 311 941 1095 4.01e-31 124
Msa0258700 AT3G01610.2 38.144 194 107 4 134 315 232 424 4.15e-31 124
Msa0258700 AT3G01610.2 39.474 190 107 5 130 315 523 708 5.51e-31 123
Msa0258700 AT3G16290.1 40.816 196 97 6 131 315 406 593 5.48e-30 120
Msa0258700 AT1G05910.1 37.566 189 108 5 131 311 377 563 1.25e-29 119
Msa0258700 AT3G47060.1 35.193 233 117 5 91 315 303 509 3.27e-29 118
Msa0258700 AT5G15250.2 34.934 229 115 8 120 317 207 432 3.92e-29 117
Msa0258700 AT5G58870.1 38.947 190 110 4 131 315 325 513 1.60e-28 116
Msa0258700 AT1G45000.2 40.000 145 83 4 125 265 128 272 3.08e-28 112
Msa0258700 AT4G04180.1 35.602 191 109 6 132 311 316 503 5.63e-28 114
Msa0258700 AT4G04180.2 35.602 191 109 6 132 311 311 498 6.22e-28 114
Msa0258700 AT2G03670.2 43.333 150 81 2 121 266 272 421 9.63e-28 112
Msa0258700 AT2G03670.2 36.082 194 110 6 131 312 15 206 3.13e-26 108
Msa0258700 AT5G08470.3 36.782 174 101 5 134 302 834 1003 1.96e-27 113
Msa0258700 AT5G08470.1 36.782 174 101 5 134 302 843 1012 2.02e-27 113
Msa0258700 AT5G64580.1 38.049 205 120 3 116 315 299 501 4.37e-26 109
Msa0258700 AT5G08470.2 34.911 169 103 4 134 299 843 1007 8.57e-24 102
Msa0258700 AT4G23940.1 35.354 198 111 6 132 315 427 621 7.52e-23 99.8
Msa0258700 AT3G04340.1 31.746 189 119 7 130 311 779 964 2.88e-17 83.2
Msa0258700 AT1G79560.3 35.065 154 85 5 169 311 527 676 3.58e-17 82.8
Msa0258700 AT1G79560.2 35.065 154 85 5 169 311 527 676 3.75e-17 82.8
Msa0258700 AT1G79560.1 35.065 154 85 5 169 311 527 676 3.87e-17 82.8
Msa0258700 AT4G24710.1 31.176 170 99 4 169 321 203 371 6.14e-17 81.6
Msa0258700 AT4G24710.3 31.176 170 99 4 169 321 215 383 6.27e-17 81.6
Msa0258700 AT4G04910.1 30.899 178 104 7 157 318 237 411 3.28e-14 73.9
Msa0258700 AT2G18330.1 30.657 137 90 3 167 302 384 516 3.58e-14 73.6
Msa0258700 AT5G16930.1 30.657 137 90 3 167 302 397 529 3.32e-13 70.9
Msa0258700 AT4G36580.1 29.927 137 91 3 167 302 381 513 5.53e-13 70.1
Msa0258700 AT3G03060.1 30.657 137 90 3 167 302 385 517 7.18e-13 69.7

Find 87 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGAATTCTGCGATTATT+AGG 0.186943 2_2:-55247766 Msa0258700:CDS
CTGCAAGAACAAGAACTTTC+TGG 0.202134 2_2:+55244346 None:intergenic
AAGGATGGTGGTGGGGAGGG+TGG 0.244754 2_2:-55247836 Msa0258700:CDS
GGTGGGGAGGGTGGTGGAGG+TGG 0.245687 2_2:-55247827 Msa0258700:CDS
GATGGTGGTGGGGAGGGTGG+TGG 0.246166 2_2:-55247833 Msa0258700:CDS
GGTGGTGGGGAGGGTGGTGG+AGG 0.266118 2_2:-55247830 Msa0258700:CDS
GTGCTTGATGACGGTGGGCC+AGG 0.284572 2_2:-55247911 Msa0258700:CDS
TTTCTCGAGCCATTTGAAAA+AGG 0.305402 2_2:+55245518 None:intergenic
GGCCCGCCAACACATGTTTA+AGG 0.326809 2_2:-55244161 Msa0258700:CDS
GTTGAATTCTGCGATTATTA+GGG 0.328089 2_2:-55247765 Msa0258700:CDS
TCTAAAGCGTTCATGTATAA+AGG 0.341061 2_2:+55248037 None:intergenic
GAGTGCTAAACAGGCTTTGC+AGG 0.354509 2_2:-55247702 Msa0258700:CDS
GGGGAAGGATGGTGGTGGGG+AGG 0.359432 2_2:-55247840 Msa0258700:CDS
ATTTGTATTTGCAGGCAATA+AGG 0.365094 2_2:-55244228 Msa0258700:intron
TACGTCGTGCTGAGGAGATC+AGG 0.383073 2_2:-55247937 Msa0258700:CDS
TATTCCACTACCAGATTTGA+AGG 0.389227 2_2:-55244182 Msa0258700:CDS
TAAGGGGAAGGATGGTGGTG+GGG 0.390562 2_2:-55247843 Msa0258700:CDS
GGGAAGGATGGTGGTGGGGA+GGG 0.396231 2_2:-55247839 Msa0258700:CDS
TTGTATGGACCTCCTGGAAC+TGG 0.396491 2_2:-55246372 Msa0258700:CDS
TGGGTTGGAGAGTGCTAAAC+AGG 0.403615 2_2:-55247711 Msa0258700:CDS
TCCGGCATTGTCTTCGTGTA+CGG 0.414643 2_2:+55248078 None:intergenic
GAGGGTGGTGGAGGTGGTGA+AGG 0.417655 2_2:-55247821 Msa0258700:CDS
TGTTGGCGGGCCTTCAAATC+TGG 0.417810 2_2:+55244172 None:intergenic
CTTCTCCACGCTGGCCACAT+AGG 0.417992 2_2:+55245458 None:intergenic
AGTAAGGGGAAGGATGGTGG+TGG 0.426631 2_2:-55247845 Msa0258700:CDS
ACGAATCAAAACAGAACTTC+TGG 0.429142 2_2:-55245413 Msa0258700:CDS
AACGATGTATAGCAATTTCA+AGG 0.438031 2_2:-55248128 None:intergenic
GCTCTAAGCTTCGCCTGCTC+CGG 0.446126 2_2:+55247791 None:intergenic
ACATCATTCCACTTAACATT+CGG 0.446378 2_2:+55247737 None:intergenic
GGGCCAGGGCCAGCTTCTAA+TGG 0.448570 2_2:-55247896 Msa0258700:CDS
TTCATCAACAAATATGATAG+AGG 0.451811 2_2:+55245489 None:intergenic
CCATCCTTCCCCTTACTCTT+CGG 0.459708 2_2:+55247851 None:intergenic
TGCTACGAGGCCGAAGAGTA+AGG 0.461247 2_2:-55247861 Msa0258700:CDS
GTGGAATGATGTTGCTGGGT+TGG 0.467137 2_2:-55247726 Msa0258700:CDS
TCGCCATTAGAAGCTGGCCC+TGG 0.467828 2_2:+55247893 None:intergenic
AGATCTTGTTTCAAAGTGGA+TGG 0.468719 2_2:-55245566 Msa0258700:CDS
GTTAAGTGGAATGATGTTGC+TGG 0.471480 2_2:-55247731 Msa0258700:CDS
CTTACCTGGTCTAAAGCATA+AGG 0.474963 2_2:+55244312 None:intergenic
GTAAGGGGAAGGATGGTGGT+GGG 0.478141 2_2:-55247844 Msa0258700:CDS
TGCCTTAAACATGTGTTGGC+GGG 0.478809 2_2:+55244159 None:intergenic
TTGCCTTAAACATGTGTTGG+CGG 0.483730 2_2:+55244158 None:intergenic
AGAACTTCTGGTGCAGATGC+AGG 0.485421 2_2:-55245401 Msa0258700:intron
TGGTGGAGGTGGTGAAGGAG+AGG 0.488082 2_2:-55247816 Msa0258700:CDS
CCCTTGCCTTAAACATGTGT+TGG 0.488382 2_2:+55244155 None:intergenic
AGGTGGTGAAGGAGAGGATC+CGG 0.491616 2_2:-55247810 Msa0258700:CDS
TGCTTGATGACGGTGGGCCA+GGG 0.491756 2_2:-55247910 Msa0258700:CDS
TTCTCCACGCTGGCCACATA+GGG 0.495975 2_2:+55245459 None:intergenic
CATCAGATCTTGTTTCAAAG+TGG 0.499401 2_2:-55245570 Msa0258700:CDS
AGCCTCAGTTGCAACTGCCT+TGG 0.502214 2_2:+55246335 None:intergenic
CTATGTGGCCAGCGTGGAGA+AGG 0.514378 2_2:-55245457 Msa0258700:CDS
GAGCAGGCGAAGCTTAGAGC+GGG 0.525277 2_2:-55247788 Msa0258700:CDS
TCATCAACAAATATGATAGA+GGG 0.526931 2_2:+55245490 None:intergenic
GCGGCATCGCCATTAGAAGC+TGG 0.534830 2_2:+55247887 None:intergenic
GGGAAAAGCCGAATGTTAAG+TGG 0.537432 2_2:-55247745 Msa0258700:CDS
CGGGCCTTCAAATCTGGTAG+TGG 0.539272 2_2:+55244178 None:intergenic
TGAAGGAGAGGATCCGGAGC+AGG 0.541483 2_2:-55247804 Msa0258700:CDS
AGCTTCTAATGGCGATGCCG+CGG 0.546566 2_2:-55247885 Msa0258700:CDS
CCGAAGAGTAAGGGGAAGGA+TGG 0.547863 2_2:-55247851 Msa0258700:CDS
GCTACGAGGCCGAAGAGTAA+GGG 0.547998 2_2:-55247860 Msa0258700:CDS
GCCAACACATGTTTAAGGCA+AGG 0.567526 2_2:-55244156 Msa0258700:CDS
TGGAAAATCATATTTAGCCA+AGG 0.574973 2_2:-55246352 Msa0258700:CDS
GATCTTGTTTCAAAGTGGAT+GGG 0.577099 2_2:-55245565 Msa0258700:CDS
CACACCTTATGCTTTAGACC+AGG 0.580873 2_2:-55244316 Msa0258700:intron
AGCCAAGGCAGTTGCAACTG+AGG 0.584896 2_2:-55246337 Msa0258700:CDS
AGGGCTGTGCTTGATGACGG+TGG 0.587321 2_2:-55247917 Msa0258700:CDS
CCAACACATGTTTAAGGCAA+GGG 0.587784 2_2:-55244155 Msa0258700:CDS
ACGTCGTGCTGAGGAGATCA+GGG 0.588419 2_2:-55247936 Msa0258700:CDS
CTCAGCACGACGTAAATACT+CGG 0.590884 2_2:+55247946 None:intergenic
AAGAGTAAGGGGAAGGATGG+TGG 0.591605 2_2:-55247848 Msa0258700:CDS
ATCAGGGCTGTGCTTGATGA+CGG 0.592760 2_2:-55247920 Msa0258700:CDS
TCTCATTGCCTTCTCCACGC+TGG 0.597326 2_2:+55245449 None:intergenic
GCCGTACACGAAGACAATGC+CGG 0.598847 2_2:-55248079 Msa0258700:CDS
CGAGTATTTACGTCGTGCTG+AGG 0.603573 2_2:-55247945 Msa0258700:CDS
TTAAGTGGAATGATGTTGCT+GGG 0.607930 2_2:-55247730 Msa0258700:CDS
GGGCTGTGCTTGATGACGGT+GGG 0.609283 2_2:-55247916 Msa0258700:CDS
CTACGAGGCCGAAGAGTAAG+GGG 0.613832 2_2:-55247859 Msa0258700:CDS
CCACTCATATTGTAGGGTGT+AGG 0.618221 2_2:-55244378 Msa0258700:intron
GCGATGCCGCGGTTGCTACG+AGG 0.619805 2_2:-55247874 Msa0258700:CDS
CATCAACAAATATGATAGAG+GGG 0.637776 2_2:+55245491 None:intergenic
GATGAAATAGATTCCCTATG+TGG 0.643720 2_2:-55245472 Msa0258700:CDS
GAGGCCGAAGAGTAAGGGGA+AGG 0.649712 2_2:-55247855 Msa0258700:CDS
ATCAACAAATATGATAGAGG+GGG 0.666172 2_2:+55245492 None:intergenic
GGAGCAGGCGAAGCTTAGAG+CGG 0.673581 2_2:-55247789 Msa0258700:CDS
AGCAGGCGAAGCTTAGAGCG+GGG 0.677406 2_2:-55247787 Msa0258700:CDS
GATTCCCTATGTGGCCAGCG+TGG 0.682011 2_2:-55245463 Msa0258700:CDS
CTTCGGCCTCGTAGCAACCG+CGG 0.685179 2_2:+55247868 None:intergenic
TTTCAGGTAAAAGACGACCA+TGG 0.700290 2_2:-55246407 Msa0258700:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTCTTAAATTATTAC+TGG + chr2_2:55244971-55244990 None:intergenic 15.0%
!! AATTTAAGAAAATGATTTAC+CGG - chr2_2:55244976-55244995 Msa0258700:intron 15.0%
!!! TTGTATTTTATTTAGGTTTT+TGG + chr2_2:55246224-55246243 None:intergenic 15.0%
!! AATAATATAGTAATTTCCAT+AGG + chr2_2:55246263-55246282 None:intergenic 15.0%
!! ATAGGTAAAAAAATGATATA+GGG + chr2_2:55246325-55246344 None:intergenic 15.0%
!! TATAGGTAAAAAAATGATAT+AGG + chr2_2:55246326-55246345 None:intergenic 15.0%
!! TCTTTATCTTATCAATATAT+AGG + chr2_2:55246343-55246362 None:intergenic 15.0%
!! TGGAAATATTCAATAAATAA+AGG + chr2_2:55246990-55247009 None:intergenic 15.0%
!!! TTTTTTTTACAGAAATGATT+TGG + chr2_2:55247010-55247029 None:intergenic 15.0%
!!! TTTTTTTTTTATGTGTGATT+TGG + chr2_2:55247037-55247056 None:intergenic 15.0%
!! AAATAAAGAGAAATACAAAA+AGG + chr2_2:55247843-55247862 None:intergenic 15.0%
!!! GTTTTTTTCGTACTTTAAAT+GGG + chr2_2:55244253-55244272 None:intergenic 20.0%
!!! GTTGTTTTTATATGATATCA+TGG - chr2_2:55244728-55244747 Msa0258700:intron 20.0%
!! AATAAGCTGAAAACAATTTA+TGG - chr2_2:55244763-55244782 Msa0258700:intron 20.0%
!! ATAAGCTGAAAACAATTTAT+GGG - chr2_2:55244764-55244783 Msa0258700:intron 20.0%
!! ATACAAAATTGCAAATCTTA+AGG - chr2_2:55245503-55245522 Msa0258700:CDS 20.0%
!! TACAAAATTGCAAATCTTAA+GGG - chr2_2:55245504-55245523 Msa0258700:CDS 20.0%
!! AACTTTAATGATATATTGAC+AGG - chr2_2:55245748-55245767 Msa0258700:intron 20.0%
!! AAATTGTTCTATTGTTTACA+TGG - chr2_2:55245961-55245980 Msa0258700:intron 20.0%
!! GTTAAAGAAATTTCTACATT+AGG - chr2_2:55246003-55246022 Msa0258700:intron 20.0%
!! AATTCTACTTAAATACCAAA+TGG + chr2_2:55246174-55246193 None:intergenic 20.0%
!!! TAGGACTTTGTATTTTATTT+AGG + chr2_2:55246231-55246250 None:intergenic 20.0%
!! AAAAAAATGATATAGGGTAA+AGG + chr2_2:55246319-55246338 None:intergenic 20.0%
!! TTGATAAGATAAAGATGAAA+AGG - chr2_2:55246348-55246367 Msa0258700:CDS 20.0%
!! TGATAAGATAAAGATGAAAA+GGG - chr2_2:55246349-55246368 Msa0258700:CDS 20.0%
!! TTTCTGTATTGTTATGAATT+AGG - chr2_2:55246598-55246617 Msa0258700:intron 20.0%
!!! CAAAAGTTAAAAATGCTTTT+AGG + chr2_2:55246642-55246661 None:intergenic 20.0%
!!! TTTTTAAATGTAGTTTTCCT+TGG - chr2_2:55247130-55247149 Msa0258700:intron 20.0%
!!! TAATGCTTCAATTTTTATGT+TGG - chr2_2:55247241-55247260 Msa0258700:intron 20.0%
!!! TTTTTGTAGGCATTTTTTTA+GGG + chr2_2:55247433-55247452 None:intergenic 20.0%
!!! AAAAATATCGTTTAAAACGA+AGG + chr2_2:55247465-55247484 None:intergenic 20.0%
!! TTGCTTCTTATTAGTATATT+GGG - chr2_2:55247569-55247588 Msa0258700:intron 20.0%
!! AGAACATAAACAAAAAATGT+TGG + chr2_2:55247820-55247839 None:intergenic 20.0%
!!! GGTTTTTTTCGTACTTTAAA+TGG + chr2_2:55244254-55244273 None:intergenic 25.0%
!! TAATTGCTTCTCTGATTTTA+GGG + chr2_2:55244275-55244294 None:intergenic 25.0%
!!! AAGTTTCCTCAATTTTTTAC+TGG - chr2_2:55244594-55244613 Msa0258700:intron 25.0%
!! TTTGTTGTCTTCTCAATATT+AGG - chr2_2:55245263-55245282 Msa0258700:intron 25.0%
! ATTATGCATAAAGAACTAGA+AGG - chr2_2:55245331-55245350 Msa0258700:intron 25.0%
! AAATCAATATGATCAATCCT+TGG + chr2_2:55245406-55245425 None:intergenic 25.0%
!!! AGGATTGATCATATTGATTT+TGG - chr2_2:55245406-55245425 Msa0258700:CDS 25.0%
!! ACAATTTTACCTGAAAAATG+TGG + chr2_2:55245948-55245967 None:intergenic 25.0%
! AATGAAATCATATTCTCAAG+TGG - chr2_2:55246056-55246075 Msa0258700:intron 25.0%
!!! TTATTTAGGTTTTTGGCATT+TGG + chr2_2:55246217-55246236 None:intergenic 25.0%
! AAAATGAACATGATGTATCT+TGG - chr2_2:55246374-55246393 Msa0258700:CDS 25.0%
!!! TTTTTTTGACGAATAAAGCA+TGG + chr2_2:55246533-55246552 None:intergenic 25.0%
! TCATCAACAAATATGATAGA+GGG + chr2_2:55246766-55246785 None:intergenic 25.0%
! TTCATCAACAAATATGATAG+AGG + chr2_2:55246767-55246786 None:intergenic 25.0%
! AACATTGTAATCAGTTTAGT+TGG - chr2_2:55246905-55246924 Msa0258700:intron 25.0%
! CAGTTATATAGTGTAATATG+TGG - chr2_2:55246962-55246981 Msa0258700:intron 25.0%
! AGCATTAATTACGAATTAAC+AGG + chr2_2:55247228-55247247 None:intergenic 25.0%
!!! GTTTTTGTAGGCATTTTTTT+AGG + chr2_2:55247434-55247453 None:intergenic 25.0%
! CAATATACTAATAAGAAGCA+AGG + chr2_2:55247570-55247589 None:intergenic 25.0%
! CTTGCTTCTTATTAGTATAT+TGG - chr2_2:55247568-55247587 Msa0258700:intron 25.0%
!!! AGAATTATTTTTGTCTTACC+TGG + chr2_2:55247958-55247977 None:intergenic 25.0%
! TCTAATCAATTTGTATTTGC+AGG - chr2_2:55248017-55248036 Msa0258700:CDS 25.0%
! AAACGCTTTTGAATAGTTTC+CGG + chr2_2:55244196-55244215 None:intergenic 30.0%
! TCTAAAGCGTTCATGTATAA+AGG + chr2_2:55244219-55244238 None:intergenic 30.0%
! GTAATTGCTTCTCTGATTTT+AGG + chr2_2:55244276-55244295 None:intergenic 30.0%
GTTGAATTCTGCGATTATTA+GGG - chr2_2:55244488-55244507 Msa0258700:intron 30.0%
ACATCATTCCACTTAACATT+CGG + chr2_2:55244519-55244538 None:intergenic 30.0%
AAAAATTGAGGAAACTTGAC+AGG + chr2_2:55244591-55244610 None:intergenic 30.0%
!!! TTTCCTCAATTTTTTACTGG+TGG - chr2_2:55244597-55244616 Msa0258700:intron 30.0%
!!! TTCCTCAATTTTTTACTGGT+GGG - chr2_2:55244598-55244617 Msa0258700:intron 30.0%
ATTATTGTCTTTGTCGTGTT+TGG - chr2_2:55244630-55244649 Msa0258700:intron 30.0%
TAGTTCAATCCATATCGAAA+TGG - chr2_2:55245139-55245158 Msa0258700:intron 30.0%
! CAATTAATTGAAGGTGTGTT+TGG + chr2_2:55245222-55245241 None:intergenic 30.0%
CTGACACTTCAATTAATTGA+AGG + chr2_2:55245231-55245250 None:intergenic 30.0%
!!! GATTGTGTTTGTGTCTTTTT+TGG - chr2_2:55245353-55245372 Msa0258700:intron 30.0%
AAGATTGGATATCAATACCA+AGG - chr2_2:55245386-55245405 Msa0258700:intron 30.0%
!!! CATATTGATTTTGGTATGCA+AGG - chr2_2:55245415-55245434 Msa0258700:CDS 30.0%
!! AGTTGGCAAGTTTGTTAATT+TGG - chr2_2:55245458-55245477 Msa0258700:CDS 30.0%
! CATGTTTTCAATGTTTTGTG+CGG - chr2_2:55245611-55245630 Msa0258700:intron 30.0%
!! AAAACTTTGAAACCATGAAG+TGG - chr2_2:55245654-55245673 Msa0258700:intron 30.0%
AGCGAAAGCAAGATTATATT+GGG - chr2_2:55245718-55245737 Msa0258700:intron 30.0%
ATCGAATGTGTATAGTTATG+TGG - chr2_2:55245786-55245805 Msa0258700:intron 30.0%
! AAATATGATTTTCCAGTTCC+AGG + chr2_2:55245896-55245915 None:intergenic 30.0%
TGGAAAATCATATTTAGCCA+AGG - chr2_2:55245901-55245920 Msa0258700:intron 30.0%
GAGAATATGATTTCATTCCA+AGG + chr2_2:55246053-55246072 None:intergenic 30.0%
TACTTAAATACCAAATGGCT+AGG + chr2_2:55246169-55246188 None:intergenic 30.0%
AATTATGATGTATGTTGCTC+TGG - chr2_2:55246422-55246441 Msa0258700:intron 30.0%
ATTATGATGTATGTTGCTCT+GGG - chr2_2:55246423-55246442 Msa0258700:intron 30.0%
GAATAAAGCATGGAAAATTG+AGG + chr2_2:55246523-55246542 None:intergenic 30.0%
TTATGAATTAGGCACATAAG+TGG - chr2_2:55246609-55246628 Msa0258700:intron 30.0%
AAGATCTGATGAAGAAATAC+TGG + chr2_2:55246674-55246693 None:intergenic 30.0%
!!! GGTTTCAAACCTTTTTCAAA+TGG - chr2_2:55246726-55246745 Msa0258700:intron 30.0%
ATCAACAAATATGATAGAGG+GGG + chr2_2:55246764-55246783 None:intergenic 30.0%
CATCAACAAATATGATAGAG+GGG + chr2_2:55246765-55246784 None:intergenic 30.0%
!!! CAGGTAATAGCTTTATGTTT+TGG - chr2_2:55246871-55246890 Msa0258700:intron 30.0%
ATACAAGCATGCACTTAAAT+GGG + chr2_2:55247092-55247111 None:intergenic 30.0%
AATACAAGCATGCACTTAAA+TGG + chr2_2:55247093-55247112 None:intergenic 30.0%
AGACTGACAAATAAAAACCA+AGG + chr2_2:55247150-55247169 None:intergenic 30.0%
! GCTTTTCAATTTCAAGAACT+TGG - chr2_2:55247179-55247198 Msa0258700:intron 30.0%
TTTCAATTTCAAGAACTTGG+AGG - chr2_2:55247182-55247201 Msa0258700:intron 30.0%
TATGTTGGAGTAGAAAATGT+TGG - chr2_2:55247256-55247275 Msa0258700:intron 30.0%
ATGTTGGAGTAGAAAATGTT+GGG - chr2_2:55247257-55247276 Msa0258700:intron 30.0%
! ACCTTAAGAAGTTGGTTAAT+GGG + chr2_2:55247373-55247392 None:intergenic 30.0%
! AACCTTAAGAAGTTGGTTAA+TGG + chr2_2:55247374-55247393 None:intergenic 30.0%
! TAACCAACTTCTTAAGGTTT+TGG - chr2_2:55247375-55247394 Msa0258700:intron 30.0%
! AACCAACTTCTTAAGGTTTT+GGG - chr2_2:55247376-55247395 Msa0258700:intron 30.0%
!!! AAGGCTTAGTTTGTTTTTGT+AGG + chr2_2:55247446-55247465 None:intergenic 30.0%
! TGAATTTTTCTTGTCTTAGC+AGG - chr2_2:55247488-55247507 Msa0258700:intron 30.0%
TTCCTTTGTTCAGCATATTA+TGG - chr2_2:55247645-55247664 Msa0258700:intron 30.0%
CAATGATGTAATATTAGCGA+TGG + chr2_2:55247709-55247728 None:intergenic 30.0%
CATCGCTAATATTACATCAT+TGG - chr2_2:55247707-55247726 Msa0258700:CDS 30.0%
! TCCTCTCTTACAATGTATTT+TGG - chr2_2:55247741-55247760 Msa0258700:CDS 30.0%
! CCTCTCTTACAATGTATTTT+GGG - chr2_2:55247742-55247761 Msa0258700:CDS 30.0%
AGTTTATCCACTCATATTGT+AGG - chr2_2:55247868-55247887 Msa0258700:CDS 30.0%
GTTTATCCACTCATATTGTA+GGG - chr2_2:55247869-55247888 Msa0258700:CDS 30.0%
ATTTGTATTTGCAGGCAATA+AGG - chr2_2:55248025-55248044 Msa0258700:CDS 30.0%
GGTTGAATTCTGCGATTATT+AGG - chr2_2:55244487-55244506 Msa0258700:intron 35.0%
TTAAGTGGAATGATGTTGCT+GGG - chr2_2:55244523-55244542 Msa0258700:intron 35.0%
AACCCACCAGTAAAAAATTG+AGG + chr2_2:55244603-55244622 None:intergenic 35.0%
!!! TCAATTTTTTACTGGTGGGT+TGG - chr2_2:55244602-55244621 Msa0258700:intron 35.0%
CTTTGTCGTGTTTGGATAAA+CGG - chr2_2:55244638-55244657 Msa0258700:intron 35.0%
TAAGCAGTTATCGAGCATAT+AGG + chr2_2:55244676-55244695 None:intergenic 35.0%
AGGTTCGTTATTCCTTAAGT+GGG + chr2_2:55245043-55245062 None:intergenic 35.0%
TAGGTTCGTTATTCCTTAAG+TGG + chr2_2:55245044-55245063 None:intergenic 35.0%
TGTGAGGGTTTATATAGGAT+TGG - chr2_2:55245077-55245096 Msa0258700:intron 35.0%
GTGAGGGTTTATATAGGATT+GGG - chr2_2:55245078-55245097 Msa0258700:intron 35.0%
!!! TGTGTTTGTGTCTTTTTTGG+AGG - chr2_2:55245356-55245375 Msa0258700:intron 35.0%
!!! TTTGTGTCTTTTTTGGAGGA+GGG - chr2_2:55245360-55245379 Msa0258700:intron 35.0%
! AGCTTTTCACAGTTGAAAGT+TGG - chr2_2:55245441-55245460 Msa0258700:CDS 35.0%
GAGCGAAAGCAAGATTATAT+TGG - chr2_2:55245717-55245736 Msa0258700:intron 35.0%
AATGTTTACTATGCTTCCTG+CGG - chr2_2:55245819-55245838 Msa0258700:intron 35.0%
TACAACAAAAATGCTCTCCA+TGG + chr2_2:55245866-55245885 None:intergenic 35.0%
!!! TGGAGAGCATTTTTGTTGTA+TGG - chr2_2:55245866-55245885 Msa0258700:intron 35.0%
CAAGGATAATCCTTGTAATC+AGG + chr2_2:55246035-55246054 None:intergenic 35.0%
CTGATTACAAGGATTATCCT+TGG - chr2_2:55246033-55246052 Msa0258700:intron 35.0%
AGGCATAAAATTTGAACTGC+AGG - chr2_2:55246121-55246140 Msa0258700:intron 35.0%
AAGCATGGAAAATTGAGGTA+TGG + chr2_2:55246518-55246537 None:intergenic 35.0%
! CATCAGATCTTGTTTCAAAG+TGG - chr2_2:55246683-55246702 Msa0258700:intron 35.0%
! AGATCTTGTTTCAAAGTGGA+TGG - chr2_2:55246687-55246706 Msa0258700:intron 35.0%
! GATCTTGTTTCAAAGTGGAT+GGG - chr2_2:55246688-55246707 Msa0258700:intron 35.0%
TTTCTCGAGCCATTTGAAAA+AGG + chr2_2:55246738-55246757 None:intergenic 35.0%
GATGAAATAGATTCCCTATG+TGG - chr2_2:55246781-55246800 Msa0258700:intron 35.0%
ACGAATCAAAACAGAACTTC+TGG - chr2_2:55246840-55246859 Msa0258700:intron 35.0%
TAAGTGCATGCTTGTATTTG+TGG - chr2_2:55247095-55247114 Msa0258700:intron 35.0%
TTTGTTTCATATCTCGCACT+TGG + chr2_2:55247286-55247305 None:intergenic 35.0%
GAAACAAAGAAGTTCCACAT+CGG - chr2_2:55247298-55247317 Msa0258700:intron 35.0%
!! TAGTTTGTTATTAGCCGATG+TGG + chr2_2:55247315-55247334 None:intergenic 35.0%
TGAAGAATACACAATGCAAG+TGG - chr2_2:55247337-55247356 Msa0258700:intron 35.0%
! AAGAAGTTGGTTAATGGGAT+GGG + chr2_2:55247368-55247387 None:intergenic 35.0%
! TAAGAAGTTGGTTAATGGGA+TGG + chr2_2:55247369-55247388 None:intergenic 35.0%
TCCCATTAACCAACTTCTTA+AGG - chr2_2:55247369-55247388 Msa0258700:intron 35.0%
TTCCCAAAACCTTAAGAAGT+TGG + chr2_2:55247381-55247400 None:intergenic 35.0%
!!! TAAGGTTTTGGGAACAAATG+TGG - chr2_2:55247387-55247406 Msa0258700:intron 35.0%
GACCATAATATGCTGAACAA+AGG + chr2_2:55247650-55247669 None:intergenic 35.0%
AGCATATTATGGTCTGTTGT+TGG - chr2_2:55247656-55247675 Msa0258700:intron 35.0%
CCCAAAATACATTGTAAGAG+AGG + chr2_2:55247745-55247764 None:intergenic 35.0%
TATTCCACTACCAGATTTGA+AGG - chr2_2:55248071-55248090 Msa0258700:CDS 35.0%
GTTAAGTGGAATGATGTTGC+TGG - chr2_2:55244522-55244541 Msa0258700:intron 40.0%
GCTCTTACAAATAGTCTCGT+AGG - chr2_2:55244809-55244828 Msa0258700:intron 40.0%
CTATATCGACCCTTGTTCTA+TGG - chr2_2:55244867-55244886 Msa0258700:intron 40.0%
GTTTGTGCTCCATAGAACAA+GGG + chr2_2:55244879-55244898 None:intergenic 40.0%
TGTTTGTGCTCCATAGAACA+AGG + chr2_2:55244880-55244899 None:intergenic 40.0%
! TTTACCGGTGTTAATGTGCA+AGG - chr2_2:55244991-55245010 Msa0258700:intron 40.0%
CTTAAGTGGGACTCTAAGTT+GGG + chr2_2:55245030-55245049 None:intergenic 40.0%
TAATCATGAACCTCGTGTGA+GGG - chr2_2:55245062-55245081 Msa0258700:intron 40.0%
TCAAAAACCATGGCTGAAAG+GGG + chr2_2:55245111-55245130 None:intergenic 40.0%
CTCAAAAACCATGGCTGAAA+GGG + chr2_2:55245112-55245131 None:intergenic 40.0%
! CTTTCAGCCATGGTTTTTGA+GGG - chr2_2:55245111-55245130 Msa0258700:intron 40.0%
!! TTTCAGCCATGGTTTTTGAG+GGG - chr2_2:55245112-55245131 Msa0258700:intron 40.0%
CAGTCACTTCCATTTCGATA+TGG + chr2_2:55245151-55245170 None:intergenic 40.0%
!!! GTTTGTGTCTTTTTTGGAGG+AGG - chr2_2:55245359-55245378 Msa0258700:intron 40.0%
!!! TTGTGTCTTTTTTGGAGGAG+GGG - chr2_2:55245361-55245380 Msa0258700:intron 40.0%
! TTTCAGGTAAAAGACGACCA+TGG - chr2_2:55245846-55245865 Msa0258700:intron 40.0%
!! TTTTTGTTGTATGGACCTCC+TGG - chr2_2:55245875-55245894 Msa0258700:intron 40.0%
! TATGATTTTCCAGTTCCAGG+AGG + chr2_2:55245893-55245912 None:intergenic 40.0%
!! AGGCTGATTCCACATTTTTC+AGG - chr2_2:55245936-55245955 Msa0258700:intron 40.0%
TAGGAACTTGCCTGATTACA+AGG - chr2_2:55246022-55246041 Msa0258700:intron 40.0%
TGCATTGCTTGCTCTCTTAA+AGG - chr2_2:55246101-55246120 Msa0258700:intron 40.0%
CTGCAGGTAAGCAATTTCTT+AGG - chr2_2:55246137-55246156 Msa0258700:intron 40.0%
!! TTTCCATAGGACTTGCTGTT+AGG + chr2_2:55246250-55246269 None:intergenic 40.0%
GATGGGTGAAAGTGAAAAAC+TGG - chr2_2:55246705-55246724 Msa0258700:intron 40.0%
! TTTCAAGAACTTGGAGGTGT+CGG - chr2_2:55247188-55247207 Msa0258700:intron 40.0%
! TTTTCTTGTCTTAGCAGGAG+AGG - chr2_2:55247493-55247512 Msa0258700:intron 40.0%
ATTGCCCAATTCCACTACTA+TGG + chr2_2:55247524-55247543 None:intergenic 40.0%
! AGGAAAGCATGGAACTATGA+TGG + chr2_2:55247630-55247649 None:intergenic 40.0%
ATGCTGAACAAAGGAAAGCA+TGG + chr2_2:55247641-55247660 None:intergenic 40.0%
AATATTAGCGATGGCGACTA+CGG + chr2_2:55247700-55247719 None:intergenic 40.0%
TTTGTTCCTAGCATTGCTGT+AGG - chr2_2:55247792-55247811 Msa0258700:CDS 40.0%
CTGCAAGAACAAGAACTTTC+TGG + chr2_2:55247910-55247929 None:intergenic 40.0%
! CTTACCTGGTCTAAAGCATA+AGG + chr2_2:55247944-55247963 None:intergenic 40.0%
TTGCCTTAAACATGTGTTGG+CGG + chr2_2:55248098-55248117 None:intergenic 40.0%
! CCAACACATGTTTAAGGCAA+GGG - chr2_2:55248098-55248117 Msa0258700:CDS 40.0%
CTCAGCACGACGTAAATACT+CGG + chr2_2:55244310-55244329 None:intergenic 45.0%
GGGAAAAGCCGAATGTTAAG+TGG - chr2_2:55244508-55244527 Msa0258700:intron 45.0%
CCTTAAGTGGGACTCTAAGT+TGG + chr2_2:55245031-55245050 None:intergenic 45.0%
CCAACTTAGAGTCCCACTTA+AGG - chr2_2:55245028-55245047 Msa0258700:intron 45.0%
CTCACACGAGGTTCATGATT+AGG + chr2_2:55245063-55245082 None:intergenic 45.0%
CTAATCATGAACCTCGTGTG+AGG - chr2_2:55245061-55245080 Msa0258700:intron 45.0%
CCTATATAAACCCTCACACG+AGG + chr2_2:55245075-55245094 None:intergenic 45.0%
CCTCGTGTGAGGGTTTATAT+AGG - chr2_2:55245072-55245091 Msa0258700:intron 45.0%
CCTCAAAAACCATGGCTGAA+AGG + chr2_2:55245113-55245132 None:intergenic 45.0%
! CCTTTCAGCCATGGTTTTTG+AGG - chr2_2:55245110-55245129 Msa0258700:intron 45.0%
!! TTCAGCCATGGTTTTTGAGG+GGG - chr2_2:55245113-55245132 Msa0258700:intron 45.0%
TAACTCCCCCTCAAAAACCA+TGG + chr2_2:55245121-55245140 None:intergenic 45.0%
TTTGGAGGAGGGGATAAGAT+TGG - chr2_2:55245371-55245390 Msa0258700:intron 45.0%
TTTGTGCGGAGAACTCTACA+AGG - chr2_2:55245625-55245644 Msa0258700:intron 45.0%
! GGTCGTCTTTTACCTGAAAG+AGG + chr2_2:55245845-55245864 None:intergenic 45.0%
TAGGACTTTGCCTAGCCATT+TGG - chr2_2:55246156-55246175 Msa0258700:intron 45.0%
!! TTTGGCATTTGGTGCAGTTG+CGG + chr2_2:55246206-55246225 None:intergenic 45.0%
AGTCCTAACAGCAAGTCCTA+TGG - chr2_2:55246244-55246263 Msa0258700:intron 45.0%
! GAGATTGAGCTGTTTCATGC+TGG - chr2_2:55247544-55247563 Msa0258700:intron 45.0%
TTGGAACCTACAGCAATGCT+AGG + chr2_2:55247801-55247820 None:intergenic 45.0%
CCTACACCCTACAATATGAG+TGG + chr2_2:55247878-55247897 None:intergenic 45.0%
CCACTCATATTGTAGGGTGT+AGG - chr2_2:55247875-55247894 Msa0258700:CDS 45.0%
! CACACCTTATGCTTTAGACC+AGG - chr2_2:55247937-55247956 Msa0258700:CDS 45.0%
!! TAGCTTCCTGCTGACTCTAT+GGG + chr2_2:55247992-55248011 None:intergenic 45.0%
!! ATAGCTTCCTGCTGACTCTA+TGG + chr2_2:55247993-55248012 None:intergenic 45.0%
! TGCCTTAAACATGTGTTGGC+GGG + chr2_2:55248097-55248116 None:intergenic 45.0%
! GCCAACACATGTTTAAGGCA+AGG - chr2_2:55248097-55248116 Msa0258700:CDS 45.0%
CCCTTGCCTTAAACATGTGT+TGG + chr2_2:55248101-55248120 None:intergenic 45.0%
TCCGGCATTGTCTTCGTGTA+CGG + chr2_2:55244178-55244197 None:intergenic 50.0%
CGAGTATTTACGTCGTGCTG+AGG - chr2_2:55244308-55244327 Msa0258700:intron 50.0%
ATCAGGGCTGTGCTTGATGA+CGG - chr2_2:55244333-55244352 Msa0258700:CDS 50.0%
CCATCCTTCCCCTTACTCTT+CGG + chr2_2:55244405-55244424 None:intergenic 50.0%
AAGAGTAAGGGGAAGGATGG+TGG - chr2_2:55244405-55244424 Msa0258700:intron 50.0%
GTGGAATGATGTTGCTGGGT+TGG - chr2_2:55244527-55244546 Msa0258700:intron 50.0%
!! TGGGTTGGAGAGTGCTAAAC+AGG - chr2_2:55244542-55244561 Msa0258700:intron 50.0%
GAGTGCTAAACAGGCTTTGC+AGG - chr2_2:55244551-55244570 Msa0258700:intron 50.0%
! ACCGGTGTTAATGTGCAAGG+AGG - chr2_2:55244994-55245013 Msa0258700:intron 50.0%
CCCTCCTTGCACATTAACAC+CGG + chr2_2:55244998-55245017 None:intergenic 50.0%
! CCGGTGTTAATGTGCAAGGA+GGG - chr2_2:55244995-55245014 Msa0258700:intron 50.0%
AAAACCATGGCTGAAAGGGG+AGG + chr2_2:55245108-55245127 None:intergenic 50.0%
ACCATGAAGTGGCTGTTCTC+TGG - chr2_2:55245665-55245684 Msa0258700:intron 50.0%
TCCAGAGAACAGCCACTTCA+TGG + chr2_2:55245669-55245688 None:intergenic 50.0%
! TTTTACCTGAAAGAGGCCGC+AGG + chr2_2:55245838-55245857 None:intergenic 50.0%
TTGTATGGACCTCCTGGAAC+TGG - chr2_2:55245881-55245900 Msa0258700:intron 50.0%
AGAACTTCTGGTGCAGATGC+AGG - chr2_2:55246852-55246871 Msa0258700:intron 50.0%
CCAATTCCACTACTATGGCC+CGG + chr2_2:55247519-55247538 None:intergenic 50.0%
! CGGGCCATAGTAGTGGAATT+GGG - chr2_2:55247517-55247536 Msa0258700:intron 50.0%
TATCACCCCATAGAGTCAGC+AGG - chr2_2:55247983-55248002 Msa0258700:CDS 50.0%
!! AGCTTCCTGCTGACTCTATG+GGG + chr2_2:55247991-55248010 None:intergenic 50.0%
GCCGTACACGAAGACAATGC+CGG - chr2_2:55244174-55244193 Msa0258700:CDS 55.0%
TACGTCGTGCTGAGGAGATC+AGG - chr2_2:55244316-55244335 Msa0258700:intron 55.0%
ACGTCGTGCTGAGGAGATCA+GGG - chr2_2:55244317-55244336 Msa0258700:CDS 55.0%
AGCTTCTAATGGCGATGCCG+CGG - chr2_2:55244368-55244387 Msa0258700:intron 55.0%
TGCTACGAGGCCGAAGAGTA+AGG - chr2_2:55244392-55244411 Msa0258700:intron 55.0%
GCTACGAGGCCGAAGAGTAA+GGG - chr2_2:55244393-55244412 Msa0258700:intron 55.0%
CTACGAGGCCGAAGAGTAAG+GGG - chr2_2:55244394-55244413 Msa0258700:intron 55.0%
CCGAAGAGTAAGGGGAAGGA+TGG - chr2_2:55244402-55244421 Msa0258700:intron 55.0%
! AGTAAGGGGAAGGATGGTGG+TGG - chr2_2:55244408-55244427 Msa0258700:intron 55.0%
! GTAAGGGGAAGGATGGTGGT+GGG - chr2_2:55244409-55244428 Msa0258700:intron 55.0%
! TAAGGGGAAGGATGGTGGTG+GGG - chr2_2:55244410-55244429 Msa0258700:intron 55.0%
AGGTGGTGAAGGAGAGGATC+CGG - chr2_2:55244443-55244462 Msa0258700:intron 55.0%
CAATCCTCCCCTTTCAGCCA+TGG - chr2_2:55245101-55245120 Msa0258700:intron 55.0%
AGCCAAGGCAGTTGCAACTG+AGG - chr2_2:55245916-55245935 Msa0258700:intron 55.0%
AGCCTCAGTTGCAACTGCCT+TGG + chr2_2:55245921-55245940 None:intergenic 55.0%
TTCTCCACGCTGGCCACATA+GGG + chr2_2:55246797-55246816 None:intergenic 55.0%
TCTCATTGCCTTCTCCACGC+TGG + chr2_2:55246807-55246826 None:intergenic 55.0%
CTTGTCTTAGCAGGAGAGGC+CGG - chr2_2:55247497-55247516 Msa0258700:intron 55.0%
TTGTCTTAGCAGGAGAGGCC+GGG - chr2_2:55247498-55247517 Msa0258700:intron 55.0%
! CCGGGCCATAGTAGTGGAAT+TGG - chr2_2:55247516-55247535 Msa0258700:intron 55.0%
CGGGCCTTCAAATCTGGTAG+TGG + chr2_2:55248078-55248097 None:intergenic 55.0%
! TGTTGGCGGGCCTTCAAATC+TGG + chr2_2:55248084-55248103 None:intergenic 55.0%
GGCCCGCCAACACATGTTTA+AGG - chr2_2:55248092-55248111 Msa0258700:CDS 55.0%
!! AGGGCTGTGCTTGATGACGG+TGG - chr2_2:55244336-55244355 Msa0258700:CDS 60.0%
!! GGGCTGTGCTTGATGACGGT+GGG - chr2_2:55244337-55244356 Msa0258700:CDS 60.0%
!! TGCTTGATGACGGTGGGCCA+GGG - chr2_2:55244343-55244362 Msa0258700:CDS 60.0%
TCGCCATTAGAAGCTGGCCC+TGG + chr2_2:55244363-55244382 None:intergenic 60.0%
GCGGCATCGCCATTAGAAGC+TGG + chr2_2:55244369-55244388 None:intergenic 60.0%
GAGGCCGAAGAGTAAGGGGA+AGG - chr2_2:55244398-55244417 Msa0258700:intron 60.0%
TGGTGGAGGTGGTGAAGGAG+AGG - chr2_2:55244437-55244456 Msa0258700:intron 60.0%
TGAAGGAGAGGATCCGGAGC+AGG - chr2_2:55244449-55244468 Msa0258700:intron 60.0%
! GCTCTAAGCTTCGCCTGCTC+CGG + chr2_2:55244465-55244484 None:intergenic 60.0%
GGAGCAGGCGAAGCTTAGAG+CGG - chr2_2:55244464-55244483 Msa0258700:intron 60.0%
GAGCAGGCGAAGCTTAGAGC+GGG - chr2_2:55244465-55244484 Msa0258700:intron 60.0%
AGCAGGCGAAGCTTAGAGCG+GGG - chr2_2:55244466-55244485 Msa0258700:intron 60.0%
TGCTTCCTGCGGCCTCTTTC+AGG - chr2_2:55245830-55245849 Msa0258700:intron 60.0%
GATTCCCTATGTGGCCAGCG+TGG - chr2_2:55246790-55246809 Msa0258700:intron 60.0%
CTTCTCCACGCTGGCCACAT+AGG + chr2_2:55246798-55246817 None:intergenic 60.0%
CTATGTGGCCAGCGTGGAGA+AGG - chr2_2:55246796-55246815 Msa0258700:intron 60.0%
!! GTGCTTGATGACGGTGGGCC+AGG - chr2_2:55244342-55244361 Msa0258700:CDS 65.0%
GGGCCAGGGCCAGCTTCTAA+TGG - chr2_2:55244357-55244376 Msa0258700:CDS 65.0%
CTTCGGCCTCGTAGCAACCG+CGG + chr2_2:55244388-55244407 None:intergenic 65.0%
!! GGGAAGGATGGTGGTGGGGA+GGG - chr2_2:55244414-55244433 Msa0258700:intron 65.0%
!! AAGGATGGTGGTGGGGAGGG+TGG - chr2_2:55244417-55244436 Msa0258700:intron 65.0%
!! GAGGGTGGTGGAGGTGGTGA+AGG - chr2_2:55244432-55244451 Msa0258700:intron 65.0%
GAGAGGCCGGGCCATAGTAG+TGG - chr2_2:55247510-55247529 Msa0258700:intron 65.0%
GCGATGCCGCGGTTGCTACG+AGG - chr2_2:55244379-55244398 Msa0258700:intron 70.0%
!! GGGGAAGGATGGTGGTGGGG+AGG - chr2_2:55244413-55244432 Msa0258700:intron 70.0%
!! GATGGTGGTGGGGAGGGTGG+TGG - chr2_2:55244420-55244439 Msa0258700:intron 70.0%
!! GGTGGTGGGGAGGGTGGTGG+AGG - chr2_2:55244423-55244442 Msa0258700:intron 75.0%
!! GGTGGGGAGGGTGGTGGAGG+TGG - chr2_2:55244426-55244445 Msa0258700:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 55244129 55248146 55244129 ID=Msa0258700;Name=Msa0258700
chr2_2 mRNA 55244129 55248146 55244129 ID=Msa0258700-mRNA-1;Parent=Msa0258700;Name=Msa0258700-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|5|0|322
chr2_2 exon 55247660 55248146 55247660 ID=Msa0258700-mRNA-1:exon:16716;Parent=Msa0258700-mRNA-1
chr2_2 exon 55246318 55246423 55246318 ID=Msa0258700-mRNA-1:exon:16715;Parent=Msa0258700-mRNA-1
chr2_2 exon 55245402 55245600 55245402 ID=Msa0258700-mRNA-1:exon:16714;Parent=Msa0258700-mRNA-1
chr2_2 exon 55244317 55244385 55244317 ID=Msa0258700-mRNA-1:exon:16713;Parent=Msa0258700-mRNA-1
chr2_2 exon 55244129 55244236 55244129 ID=Msa0258700-mRNA-1:exon:16712;Parent=Msa0258700-mRNA-1
chr2_2 CDS 55247660 55248146 55247660 ID=Msa0258700-mRNA-1:cds;Parent=Msa0258700-mRNA-1
chr2_2 CDS 55246318 55246423 55246318 ID=Msa0258700-mRNA-1:cds;Parent=Msa0258700-mRNA-1
chr2_2 CDS 55245402 55245600 55245402 ID=Msa0258700-mRNA-1:cds;Parent=Msa0258700-mRNA-1
chr2_2 CDS 55244317 55244385 55244317 ID=Msa0258700-mRNA-1:cds;Parent=Msa0258700-mRNA-1
chr2_2 CDS 55244129 55244236 55244129 ID=Msa0258700-mRNA-1:cds;Parent=Msa0258700-mRNA-1
Gene Sequence

>Msa0258700

ATGTATAGCAATTTCAAGGAACAAGCAATAGAGTACGTGAAACAAGCCGTACACGAAGACAATGCCGGAAACTATTCAAAAGCGTTTCCTTTATACATGAACGCTTTAGAGTATTTCAAAACCCATTTAAAGTACGAAAAAAACCCTAAAATCAGAGAAGCAATTACGCAGAAATTCACCGAGTATTTACGTCGTGCTGAGGAGATCAGGGCTGTGCTTGATGACGGTGGGCCAGGGCCAGCTTCTAATGGCGATGCCGCGGTTGCTACGAGGCCGAAGAGTAAGGGGAAGGATGGTGGTGGGGAGGGTGGTGGAGGTGGTGAAGGAGAGGATCCGGAGCAGGCGAAGCTTAGAGCGGGGTTGAATTCTGCGATTATTAGGGAAAAGCCGAATGTTAAGTGGAATGATGTTGCTGGGTTGGAGAGTGCTAAACAGGCTTTGCAGGAAGCTGTTATTTTACCTGTCAAGTTTCCTCAATTTTTTACTGGTAAAAGACGACCATGGAGAGCATTTTTGTTGTATGGACCTCCTGGAACTGGAAAATCATATTTAGCCAAGGCAGTTGCAACTGAGGCTGATTCCACATTTTTCAGTATTTCTTCATCAGATCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAACTGGTTTCAAACCTTTTTCAAATGGCTCGAGAAAGTGCCCCCTCTATCATATTTGTTGATGAAATAGATTCCCTATGTGGCCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATCAAAACAGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTTGTTCTTGCAGCAACAAACACACCTTATGCTTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGTATTTATATTCCACTACCAGATTTGAAGGCCCGCCAACACATGTTTAAGGCAAGGGCAATTTCAATGATTACTCAGTCCTGA
Protein sequence

>Msa0258700

MYSNFKEQAIEYVKQAVHEDNAGNYSKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKSKGKDGGGEGGGGGEGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKARAISMITQS*