Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088610 | XP_003592967.1 | 90.090 | 444 | 27 | 2 | 18 | 448 | 50 | 489 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088610 | sp|O49429|MORF1_ARATH | 44.361 | 266 | 114 | 8 | 15 | 257 | 1 | 255 | 3.19e-60 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088610 | G7INP0 | 90.090 | 444 | 27 | 2 | 18 | 448 | 50 | 489 | 0.0 | 800 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088610 | Msa0333220 | 0.808073 | 3.705326e-50 | -8.615850e-47 |
| Msa0088610 | Msa1071040 | 0.818132 | 2.299247e-52 | -8.615850e-47 |
| Msa0088610 | Msa1118440 | 0.827211 | 1.772894e-54 | -8.615850e-47 |
| Msa0088610 | Msa1159030 | 0.820045 | 8.439471e-53 | -8.615850e-47 |
| Msa0088610 | Msa1340560 | 0.819617 | 1.057281e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088610 | MtrunA17_Chr2g0277431 | 90.090 | 444 | 27 | 2 | 18 | 448 | 50 | 489 | 0.0 | 800 |
| Msa0088610 | MtrunA17_Chr2g0277451 | 74.219 | 128 | 30 | 1 | 1 | 128 | 1 | 125 | 8.50e-56 | 181 |
| Msa0088610 | MtrunA17_Chr2g0280611 | 53.968 | 126 | 57 | 1 | 83 | 208 | 78 | 202 | 2.75e-39 | 141 |
| Msa0088610 | MtrunA17_Chr4g0067641 | 54.464 | 112 | 50 | 1 | 83 | 194 | 80 | 190 | 1.40e-37 | 137 |
| Msa0088610 | MtrunA17_Chr1g0166671 | 45.223 | 157 | 69 | 4 | 55 | 198 | 35 | 187 | 2.94e-31 | 119 |
| Msa0088610 | MtrunA17_Chr1g0187251 | 49.558 | 113 | 56 | 1 | 86 | 198 | 94 | 205 | 2.88e-29 | 114 |
| Msa0088610 | MtrunA17_Chr1g0148081 | 32.653 | 343 | 171 | 15 | 6 | 322 | 5 | 313 | 3.21e-23 | 99.8 |
| Msa0088610 | MtrunA17_Chr2g0316311 | 45.133 | 113 | 60 | 2 | 83 | 195 | 86 | 196 | 3.48e-23 | 100 |
| Msa0088610 | MtrunA17_Chr6g0467031 | 37.037 | 108 | 58 | 3 | 89 | 191 | 72 | 174 | 1.90e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088610 | AT4G20020.2 | 44.361 | 266 | 114 | 8 | 15 | 257 | 1 | 255 | 1.57e-61 | 206 |
| Msa0088610 | AT4G20020.1 | 44.361 | 266 | 114 | 8 | 15 | 257 | 1 | 255 | 3.25e-61 | 205 |
| Msa0088610 | AT5G44780.1 | 44.162 | 197 | 96 | 4 | 5 | 197 | 1 | 187 | 1.23e-42 | 160 |
| Msa0088610 | AT1G11430.1 | 60.909 | 110 | 42 | 1 | 83 | 192 | 78 | 186 | 2.83e-40 | 144 |
| Msa0088610 | AT3G06790.2 | 57.143 | 112 | 46 | 2 | 83 | 194 | 85 | 194 | 2.01e-36 | 134 |
| Msa0088610 | AT3G06790.1 | 57.143 | 112 | 46 | 2 | 83 | 194 | 85 | 194 | 3.04e-36 | 134 |
| Msa0088610 | AT2G35240.1 | 45.833 | 144 | 64 | 3 | 86 | 227 | 90 | 221 | 2.06e-31 | 120 |
| Msa0088610 | AT1G32580.1 | 43.791 | 153 | 72 | 3 | 86 | 236 | 87 | 227 | 7.95e-31 | 119 |
| Msa0088610 | AT3G15000.1 | 36.410 | 195 | 112 | 5 | 2 | 195 | 15 | 198 | 3.81e-25 | 107 |
| Msa0088610 | AT1G72530.1 | 38.318 | 107 | 64 | 2 | 86 | 192 | 48 | 152 | 1.89e-17 | 80.5 |
| Msa0088610 | AT1G72530.2 | 36.937 | 111 | 64 | 3 | 86 | 192 | 48 | 156 | 2.79e-15 | 74.7 |
| Msa0088610 | AT1G53260.2 | 46.774 | 62 | 33 | 0 | 134 | 195 | 2 | 63 | 1.02e-11 | 65.1 |
| Msa0088610 | AT1G53260.1 | 47.458 | 59 | 31 | 0 | 134 | 192 | 2 | 60 | 1.32e-11 | 65.5 |
Find 180 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCATGATTATTCCCCTTC+TGG | 0.152275 | 1_2:-69698410 | None:intergenic |
| ACAAATACCTTCAAATTTCT+TGG | 0.193516 | 1_2:-69697048 | None:intergenic |
| GCTGAATCAAACCGGATATT+TGG | 0.205342 | 1_2:-69697955 | None:intergenic |
| TTGAATTGTGTAAATTATAA+AGG | 0.249285 | 1_2:-69698955 | None:intergenic |
| GATGAAATAGAACCGGTAAT+TGG | 0.256818 | 1_2:-69696580 | None:intergenic |
| AGGTGGAGGTTTGTTATCTC+TGG | 0.258166 | 1_2:-69696791 | None:intergenic |
| GTGCTAAGGGTTTCAATATC+AGG | 0.262167 | 1_2:+69696845 | Msa0088610:CDS |
| CGACCTCCACCAGTACAATT+TGG | 0.262627 | 1_2:+69697736 | Msa0088610:CDS |
| TCGCTTTCGGTCCCAATTAC+CGG | 0.272059 | 1_2:+69696568 | Msa0088610:CDS |
| CGGAGTTATCTTTGTGTTGC+CGG | 0.290339 | 1_2:+69697474 | Msa0088610:CDS |
| GGTTGGAGAGAGTAGGGTTT+TGG | 0.304529 | 1_2:-69696458 | None:intergenic |
| AATCAACTTAGAATGCAATT+TGG | 0.312821 | 1_2:-69698724 | None:intergenic |
| TGAACGCCGTCGACGACGTT+TGG | 0.320333 | 1_2:-69696625 | None:intergenic |
| ATAACAAATAAGTTAGAGAT+AGG | 0.328503 | 1_2:-69698932 | None:intergenic |
| GGATTTCAAACCATCATATA+TGG | 0.330866 | 1_2:+69698371 | Msa0088610:CDS |
| GAACGCCGTCGACGACGTTT+GGG | 0.334529 | 1_2:-69696624 | None:intergenic |
| AGCTACTGCGACTTCGCTTT+CGG | 0.360324 | 1_2:+69696555 | Msa0088610:CDS |
| GTGCTTGATCATAGCTCTGC+TGG | 0.368496 | 1_2:-69697996 | None:intergenic |
| GAGGGATTCCCTCGGTTGTT+TGG | 0.372916 | 1_2:-69697805 | None:intergenic |
| ATGCGCCACGGCAGAACTTT+GGG | 0.375645 | 1_2:+69698196 | Msa0088610:CDS |
| TGATAGTAGTTTGGATCTCC+TGG | 0.381637 | 1_2:+69698682 | Msa0088610:exon |
| AGCATGATTATTCCCCTTCT+GGG | 0.387365 | 1_2:-69698409 | None:intergenic |
| CCAAGGGATGGTAGAAACTA+TGG | 0.387810 | 1_2:+69697850 | Msa0088610:CDS |
| ATGTCAAATACGACGTCGTT+TGG | 0.388549 | 1_2:-69698994 | None:intergenic |
| TTCTTTCTCCTTGTCCTGGC+GGG | 0.390261 | 1_2:-69698269 | None:intergenic |
| CCTCCATACTGCTTGTTCAC+AGG | 0.391130 | 1_2:-69697511 | None:intergenic |
| TACAAAGAATGTGGTATGTA+AGG | 0.397330 | 1_2:+69698823 | Msa0088610:three_prime_UTR |
| CAGCAAAATGTTGGCCCGCC+AGG | 0.397801 | 1_2:+69698255 | Msa0088610:CDS |
| TATGCGCCACGGCAGAACTT+TGG | 0.400286 | 1_2:+69698195 | Msa0088610:CDS |
| ATGAAATAGAACCGGTAATT+GGG | 0.400337 | 1_2:-69696579 | None:intergenic |
| TTTCCACCTCAACAGAACTA+TGG | 0.401446 | 1_2:+69697886 | Msa0088610:CDS |
| TGCTTGATCATAGCTCTGCT+GGG | 0.408969 | 1_2:-69697995 | None:intergenic |
| CAGGAGGTGGAAATCTTTGT+TGG | 0.409047 | 1_2:-69698449 | None:intergenic |
| ACCGGATATTTGGTTGTTGT+TGG | 0.414885 | 1_2:-69697945 | None:intergenic |
| GGAATCCCTCTTACAACAAT+CGG | 0.421869 | 1_2:+69697818 | Msa0088610:CDS |
| GTACAATTTGGGAGAAATCT+AGG | 0.426083 | 1_2:+69697748 | Msa0088610:CDS |
| TTTCTTCTTTCTCCTTGTCC+TGG | 0.430267 | 1_2:-69698273 | None:intergenic |
| GACCTCCACCAGTACAATTT+GGG | 0.430347 | 1_2:+69697737 | Msa0088610:CDS |
| AGGACCATAGGTTTGCTGTT+TGG | 0.430424 | 1_2:-69698109 | None:intergenic |
| TATCCACCCAAACAAAACTA+TGG | 0.437816 | 1_2:+69698027 | Msa0088610:CDS |
| GACCCTGTGAACAAGCAGTA+TGG | 0.438673 | 1_2:+69697508 | Msa0088610:CDS |
| CGAATCATTTCTTCAGGTGG+AGG | 0.439284 | 1_2:-69696805 | None:intergenic |
| TATGCGCCACAGCAGAACTT+TGG | 0.449668 | 1_2:+69698297 | Msa0088610:CDS |
| GATTGCATGTCCTTGCCAAT+GGG | 0.450211 | 1_2:+69698743 | Msa0088610:three_prime_UTR |
| TTTCTTCTTTCTCCTTCTCC+CGG | 0.453717 | 1_2:-69698171 | None:intergenic |
| GAAGAGTCCAAGAAATTTGA+AGG | 0.456510 | 1_2:+69697041 | Msa0088610:CDS |
| AACTTCAGCAAGGGCCTCCC+AGG | 0.457480 | 1_2:-69698700 | None:intergenic |
| GCCAACAACAACCAAATATC+CGG | 0.458194 | 1_2:+69697944 | Msa0088610:CDS |
| TCAAATTCCTCCATATATGA+TGG | 0.460060 | 1_2:-69698381 | None:intergenic |
| TATCCACCACAGCAGAGCTT+TGG | 0.463958 | 1_2:+69698144 | Msa0088610:CDS |
| GAACTTTGGACCACTGGGAC+AGG | 0.466168 | 1_2:+69698311 | Msa0088610:CDS |
| CGAGGTTGATCTGAATGAAC+GGG | 0.468117 | 1_2:-69696650 | None:intergenic |
| ACAGCAGAGCTTTGGACCAC+CGG | 0.470038 | 1_2:+69698152 | Msa0088610:CDS |
| GGAATCCCGATTGTTGTAAG+AGG | 0.470092 | 1_2:-69697824 | None:intergenic |
| AGATTTCTCCCAAATTGTAC+TGG | 0.474613 | 1_2:-69697745 | None:intergenic |
| AATTGTACTGGTGGAGGTCG+AGG | 0.477720 | 1_2:-69697733 | None:intergenic |
| GATTCGATTATTGACCCCAT+TGG | 0.480674 | 1_2:-69698758 | None:intergenic |
| CGGCAGAACTTTGGGCCACC+GGG | 0.483926 | 1_2:+69698204 | Msa0088610:CDS |
| TTATGAAGAAACTTGTGCTA+AGG | 0.485239 | 1_2:+69696831 | Msa0088610:CDS |
| ACAGCAGAACTTTGGACCAC+TGG | 0.486130 | 1_2:+69698305 | Msa0088610:CDS |
| TATTTGGTTGTTGTTGGCCA+AGG | 0.486495 | 1_2:-69697939 | None:intergenic |
| ACGGCAGAACTTTGGGCCAC+CGG | 0.489335 | 1_2:+69698203 | Msa0088610:CDS |
| TATGAAGAAACTTGTGCTAA+GGG | 0.489463 | 1_2:+69696832 | Msa0088610:CDS |
| ATGGTGTCAGGACCAATCTC+AGG | 0.489874 | 1_2:-69696718 | None:intergenic |
| GGTGGAGGTTTGTTATCTCT+GGG | 0.493016 | 1_2:-69696790 | None:intergenic |
| CCTTCGAAGAGGATGGTGTC+AGG | 0.493439 | 1_2:-69696730 | None:intergenic |
| CTCCATACTGCTTGTTCACA+GGG | 0.493888 | 1_2:-69697510 | None:intergenic |
| CCAGTAAAATTGCTAGGGCC+AGG | 0.494495 | 1_2:-69698468 | None:intergenic |
| AGGAGGTGGAAATCTTTGTT+GGG | 0.495454 | 1_2:-69698448 | None:intergenic |
| TAACATAAGCAGGCAGCAGC+TGG | 0.496993 | 1_2:-69698852 | None:intergenic |
| CAACAAAGATTTCCACCTCC+TGG | 0.497247 | 1_2:+69698450 | Msa0088610:CDS |
| CGAAGTCGCAGTAGCTGAGA+AGG | 0.498879 | 1_2:-69696548 | None:intergenic |
| CTCCCAAATTGTACTGGTGG+AGG | 0.499376 | 1_2:-69697739 | None:intergenic |
| TCAGAACTCAGTCCTGAGAT+TGG | 0.500163 | 1_2:+69696706 | Msa0088610:CDS |
| GATAGTAGTTTGGATCTCCT+GGG | 0.505442 | 1_2:+69698683 | Msa0088610:exon |
| GGCGGTGGTTGGAGAGAGTA+GGG | 0.506484 | 1_2:-69696464 | None:intergenic |
| ACAGGGTCAATGTAAGAATC+CGG | 0.508563 | 1_2:-69697493 | None:intergenic |
| TGATTGCATGTCCTTGCCAA+TGG | 0.509203 | 1_2:+69698742 | Msa0088610:three_prime_UTR |
| AAAATGTGATGAAATAGAAC+CGG | 0.509305 | 1_2:-69696587 | None:intergenic |
| CCACTGGGACAGGGAGAAAG+AGG | 0.509553 | 1_2:+69698321 | Msa0088610:CDS |
| TCTCTCTTGTCTTCTCGCTA+CGG | 0.509897 | 1_2:+69696676 | Msa0088610:CDS |
| CTTCTTCTGTCTACTTCTCC+CGG | 0.510565 | 1_2:-69698222 | None:intergenic |
| TAACAAATAAGTTAGAGATA+GGG | 0.512918 | 1_2:-69698931 | None:intergenic |
| AAGGTTGCGATTACAATCAC+TGG | 0.516564 | 1_2:+69696749 | Msa0088610:CDS |
| TATTCCAAACAGCAAACCTA+TGG | 0.521162 | 1_2:+69698105 | Msa0088610:CDS |
| GAGAATTAGCGACGATGCCA+TGG | 0.522594 | 1_2:-69696485 | None:intergenic |
| GCTGCGATGCTGAATCAAAC+CGG | 0.524624 | 1_2:-69697963 | None:intergenic |
| CTGTGCCTAGTGAAGGTGGA+TGG | 0.529404 | 1_2:+69698349 | Msa0088610:CDS |
| GTGATCTCAGGCTACGGCGG+AGG | 0.532432 | 1_2:-69696507 | None:intergenic |
| GGTGGATACTGTGGCGAAGC+AGG | 0.533094 | 1_2:-69698129 | None:intergenic |
| CCATAGTTTCTACCATCCCT+TGG | 0.533589 | 1_2:-69697850 | None:intergenic |
| TGCAGTACAACTGTTTACAC+TGG | 0.536636 | 1_2:+69696996 | Msa0088610:CDS |
| ACCTCTCCAGTAAAATTGCT+AGG | 0.537861 | 1_2:-69698474 | None:intergenic |
| CATTGTCACATACAATGTCT+TGG | 0.540618 | 1_2:-69698901 | None:intergenic |
| AAACGAATCATTTCTTCAGG+TGG | 0.541590 | 1_2:-69696808 | None:intergenic |
| TAGCTGAGAAGGAGTGGTGG+AGG | 0.542761 | 1_2:-69696537 | None:intergenic |
| GAATCCCTCTTACAACAATC+GGG | 0.542891 | 1_2:+69697819 | Msa0088610:CDS |
| AGCTTTGGACCACCGGGAGA+AGG | 0.543753 | 1_2:+69698159 | Msa0088610:CDS |
| GGAATTTGAACAAGCCCAGA+AGG | 0.546452 | 1_2:+69698395 | Msa0088610:CDS |
| AAATCCCATCCACCTTCACT+AGG | 0.549954 | 1_2:-69698354 | None:intergenic |
| TGATCATAGCTCTGCTGGGG+TGG | 0.551769 | 1_2:-69697991 | None:intergenic |
| CTTCTTTCTCCTTGTCCTGG+CGG | 0.551794 | 1_2:-69698270 | None:intergenic |
| TAGCGACGATGCCATGGCGG+TGG | 0.552180 | 1_2:-69696479 | None:intergenic |
| GACGATGCCATGGCGGTGGT+TGG | 0.556448 | 1_2:-69696475 | None:intergenic |
| CTGTGGCGAAGCAGGACCAT+AGG | 0.556513 | 1_2:-69698121 | None:intergenic |
| GTGGAGGAATGTGTGATGCT+TGG | 0.556911 | 1_2:-69697909 | None:intergenic |
| GGTCCAAAGCTCTGCTGTGG+TGG | 0.557931 | 1_2:-69698147 | None:intergenic |
| TTTCTCCCAAATTGTACTGG+TGG | 0.558252 | 1_2:-69697742 | None:intergenic |
| ACAGGAGATCAGTACATTGA+AGG | 0.559699 | 1_2:+69697700 | Msa0088610:intron |
| CCTCTTTCTCCCTGTCCCAG+TGG | 0.561101 | 1_2:-69698321 | None:intergenic |
| TCGAGGTTGATCTGAATGAA+CGG | 0.562081 | 1_2:-69696651 | None:intergenic |
| CAGCAGAACTTTGGACCACT+GGG | 0.562728 | 1_2:+69698306 | Msa0088610:CDS |
| AACGCCGTCGACGACGTTTG+GGG | 0.563351 | 1_2:-69696623 | None:intergenic |
| GTTTCTACCATCCCTTGGCA+TGG | 0.563433 | 1_2:-69697845 | None:intergenic |
| AAGTATATCTGACGATGCCA+TGG | 0.563969 | 1_2:-69696384 | None:intergenic |
| TGGCGGTGGTTGGAGAGAGT+AGG | 0.564065 | 1_2:-69696465 | None:intergenic |
| TGTGCCTAGTGAAGGTGGAT+GGG | 0.564317 | 1_2:+69698350 | Msa0088610:CDS |
| GGCAACACAAAGATAACTCC+GGG | 0.564421 | 1_2:-69697472 | None:intergenic |
| AAATTGCTAGGGCCAGGAGG+TGG | 0.569045 | 1_2:-69698462 | None:intergenic |
| AACTCTGTGCCTAGTGAAGG+TGG | 0.569286 | 1_2:+69698345 | Msa0088610:CDS |
| AATGTTGGCCCGCCAGGACA+AGG | 0.569289 | 1_2:+69698261 | Msa0088610:CDS |
| CAGCAGAGCTTTGGACCACC+GGG | 0.574321 | 1_2:+69698153 | Msa0088610:CDS |
| CGGCAACACAAAGATAACTC+CGG | 0.575792 | 1_2:-69697473 | None:intergenic |
| GATTATTGACCCCATTGGCA+AGG | 0.576302 | 1_2:-69698753 | None:intergenic |
| TGAGAAGGAGTGGTGGAGGA+CGG | 0.580675 | 1_2:-69696533 | None:intergenic |
| TCGCAGTAGCTGAGAAGGAG+TGG | 0.580953 | 1_2:-69696543 | None:intergenic |
| TATGCGCCGCAGCAAAATGT+TGG | 0.581806 | 1_2:+69698246 | Msa0088610:CDS |
| CCTGACACCATCCTCTTCGA+AGG | 0.582398 | 1_2:+69696730 | Msa0088610:CDS |
| GGAGGACGGAGAGTGATCTC+AGG | 0.582544 | 1_2:-69696519 | None:intergenic |
| TAATCATGCTGAAGAACAGA+CGG | 0.584349 | 1_2:+69698422 | Msa0088610:CDS |
| GGAAACTCTGTGCCTAGTGA+AGG | 0.586295 | 1_2:+69698342 | Msa0088610:CDS |
| GAATCCCGATTGTTGTAAGA+GGG | 0.586300 | 1_2:-69697823 | None:intergenic |
| CCTCTCCAGTAAAATTGCTA+GGG | 0.592900 | 1_2:-69698473 | None:intergenic |
| CAATTTGGTAACTTCAGCAA+GGG | 0.593519 | 1_2:-69698709 | None:intergenic |
| TAGGAGGAAGACGAGACTAT+CGG | 0.594936 | 1_2:+69697767 | Msa0088610:CDS |
| CGGGATTCCATGCCAAGGGA+TGG | 0.595865 | 1_2:+69697838 | Msa0088610:CDS |
| AGCTATGATCAAGCACCACA+AGG | 0.596634 | 1_2:+69698003 | Msa0088610:CDS |
| CTCTGCTGTGGTGGATACTG+TGG | 0.600550 | 1_2:-69698138 | None:intergenic |
| TGGCCATAGTTCTGTTGAGG+TGG | 0.603738 | 1_2:-69697889 | None:intergenic |
| GCTTGGCCATAGTTCTGTTG+AGG | 0.603846 | 1_2:-69697892 | None:intergenic |
| AGTGGTCCAAAGTTCTGCTG+TGG | 0.607332 | 1_2:-69698303 | None:intergenic |
| ATTGTACTGGTGGAGGTCGA+GGG | 0.609778 | 1_2:-69697732 | None:intergenic |
| ATCAATTGCCAAACAACCGA+GGG | 0.610471 | 1_2:+69697797 | Msa0088610:CDS |
| CTTCTTTCTCCTTCTCCCGG+TGG | 0.610979 | 1_2:-69698168 | None:intergenic |
| TGTTGTAAGAGGGATTCCCT+CGG | 0.611597 | 1_2:-69697813 | None:intergenic |
| AATCATGCTGAAGAACAGAC+GGG | 0.612561 | 1_2:+69698423 | Msa0088610:CDS |
| GCAATTTGGTAACTTCAGCA+AGG | 0.614998 | 1_2:-69698710 | None:intergenic |
| AAATCCCCAAACGTCGTCGA+CGG | 0.615141 | 1_2:+69696619 | Msa0088610:CDS |
| ATCGCAACCTTCGAAGAGGA+TGG | 0.615614 | 1_2:-69696737 | None:intergenic |
| CGGAGAGTGATCTCAGGCTA+CGG | 0.616194 | 1_2:-69696513 | None:intergenic |
| AACTTTGGACCACTGGGACA+GGG | 0.616250 | 1_2:+69698312 | Msa0088610:CDS |
| CAGTAGCTGAGAAGGAGTGG+TGG | 0.617757 | 1_2:-69696540 | None:intergenic |
| ATTCCTCCACAACAAAACCT+TGG | 0.618293 | 1_2:+69697922 | Msa0088610:CDS |
| ACTCTCTCCAACCACCGCCA+TGG | 0.624268 | 1_2:+69696468 | Msa0088610:exon |
| GGTGGCCCAAAGTTCTGCCG+TGG | 0.626931 | 1_2:-69698201 | None:intergenic |
| TTTGTAATGAAAACAGAACA+TGG | 0.627428 | 1_2:-69698806 | None:intergenic |
| GGTGGTCCAAAGCTCTGCTG+TGG | 0.627905 | 1_2:-69698150 | None:intergenic |
| GAATTTGAACAAGCCCAGAA+GGG | 0.628457 | 1_2:+69698396 | Msa0088610:CDS |
| AGAAGACAAGAGAGAAATCG+AGG | 0.630277 | 1_2:-69696668 | None:intergenic |
| TTTCAAACCATCATATATGG+AGG | 0.632324 | 1_2:+69698374 | Msa0088610:CDS |
| CAATCGGGATTCCATGCCAA+GGG | 0.634508 | 1_2:+69697834 | Msa0088610:CDS |
| ATTGCATGTCCTTGCCAATG+GGG | 0.637692 | 1_2:+69698744 | Msa0088610:three_prime_UTR |
| AATTTGAACAAGCCCAGAAG+GGG | 0.637787 | 1_2:+69698397 | Msa0088610:CDS |
| ACAATCGGGATTCCATGCCA+AGG | 0.637883 | 1_2:+69697833 | Msa0088610:CDS |
| AAAGAAGAAATTATGCGCCA+CGG | 0.637957 | 1_2:+69698184 | Msa0088610:CDS |
| AATCAATTGCCAAACAACCG+AGG | 0.644295 | 1_2:+69697796 | Msa0088610:CDS |
| CGCTTGATTGAAGTTCTGCG+AGG | 0.644978 | 1_2:-69698073 | None:intergenic |
| GCTTGATCATAGCTCTGCTG+GGG | 0.651267 | 1_2:-69697994 | None:intergenic |
| TGTAATCGCAACCTTCGAAG+AGG | 0.655228 | 1_2:-69696741 | None:intergenic |
| GTAAAATTGCTAGGGCCAGG+AGG | 0.658786 | 1_2:-69698465 | None:intergenic |
| TGTTTGGGTGGATACCCTTG+TGG | 0.664703 | 1_2:-69698018 | None:intergenic |
| CCTGTGAACAAGCAGTATGG+AGG | 0.671051 | 1_2:+69697511 | Msa0088610:CDS |
| GCTATGATCAAGCACCACAA+GGG | 0.671691 | 1_2:+69698004 | Msa0088610:CDS |
| AGTAGTTTGGATCTCCTGGG+AGG | 0.674182 | 1_2:+69698686 | Msa0088610:three_prime_UTR |
| CTTCTGTCTACTTCTCCCGG+TGG | 0.703848 | 1_2:-69698219 | None:intergenic |
| TATATCTGACGATGCCATGG+CGG | 0.714094 | 1_2:-69696381 | None:intergenic |
| AGAGTGATCTCAGGCTACGG+CGG | 0.717816 | 1_2:-69696510 | None:intergenic |
| AATTAGCGACGATGCCATGG+CGG | 0.721913 | 1_2:-69696482 | None:intergenic |
| CAATTTGGGAGAAATCTAGG+AGG | 0.741053 | 1_2:+69697751 | Msa0088610:CDS |
| ATCATGCTGAAGAACAGACG+GGG | 0.746376 | 1_2:+69698424 | Msa0088610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAGAAAGATTAATATTA+TGG | + | chr1_2:69696906-69696925 | Msa0088610:intron | 10.0% |
| !!! | TTATACAATGTATCATTTTT+TGG | - | chr1_2:69697348-69697367 | None:intergenic | 15.0% |
| !! | AACAAAAAAAAAAATTGCAA+AGG | + | chr1_2:69698543-69698562 | Msa0088610:intron | 15.0% |
| !! | TTGAATTGTGTAAATTATAA+AGG | - | chr1_2:69698958-69698977 | None:intergenic | 15.0% |
| !! | TTTATGGTTTCTTAAATACT+TGG | + | chr1_2:69697625-69697644 | Msa0088610:intron | 20.0% |
| !!! | TTGTTTTTGTTATTTTATGC+AGG | + | chr1_2:69698651-69698670 | Msa0088610:intron | 20.0% |
| !!! | TGTTTTTGTTATTTTATGCA+GGG | + | chr1_2:69698652-69698671 | Msa0088610:intron | 20.0% |
| !!! | TTCAAAATTTTAACATAAGC+AGG | - | chr1_2:69698865-69698884 | None:intergenic | 20.0% |
| !!! | CTTATGTTAAAATTTTGAAC+TGG | + | chr1_2:69698866-69698885 | Msa0088610:three_prime_UTR | 20.0% |
| !! | TAACAAATAAGTTAGAGATA+GGG | - | chr1_2:69698934-69698953 | None:intergenic | 20.0% |
| !! | ATAACAAATAAGTTAGAGAT+AGG | - | chr1_2:69698935-69698954 | None:intergenic | 20.0% |
| ! | AAAATGTGATGAAATAGAAC+CGG | - | chr1_2:69696590-69696609 | None:intergenic | 25.0% |
| ! | TAAAAACGAATCATTTCTTC+AGG | - | chr1_2:69696814-69696833 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTAGTGTTGAAG+AGG | + | chr1_2:69696953-69696972 | Msa0088610:intron | 25.0% |
| ! | ACAAATACCTTCAAATTTCT+TGG | - | chr1_2:69697051-69697070 | None:intergenic | 25.0% |
| ! | CAATGAAATCTAATCTAAGT+AGG | - | chr1_2:69697082-69697101 | None:intergenic | 25.0% |
| ! | CTTTCTAATCTATAACAAAC+AGG | - | chr1_2:69697118-69697137 | None:intergenic | 25.0% |
| ! | AATAGGTCAATGAAATCTAA+GGG | - | chr1_2:69697398-69697417 | None:intergenic | 25.0% |
| ! | AAATAGGTCAATGAAATCTA+AGG | - | chr1_2:69697399-69697418 | None:intergenic | 25.0% |
| ! | TCTATTGTCTCAACTAAAAT+AGG | - | chr1_2:69697415-69697434 | None:intergenic | 25.0% |
| !! | GAGACAATAGAAAATGATTT+TGG | + | chr1_2:69697424-69697443 | Msa0088610:intron | 25.0% |
| !!! | AATGCACGCTATTTTATTTA+TGG | + | chr1_2:69697609-69697628 | Msa0088610:intron | 25.0% |
| ! | ATTTATTTGAGAGCAACTTT+CGG | + | chr1_2:69697669-69697688 | Msa0088610:intron | 25.0% |
| ! | AATCAACTTAGAATGCAATT+TGG | - | chr1_2:69698727-69698746 | None:intergenic | 25.0% |
| ! | TTTGTAATGAAAACAGAACA+TGG | - | chr1_2:69698809-69698828 | None:intergenic | 25.0% |
| !! | TGTTTTCATTACAAAGAATG+TGG | + | chr1_2:69698814-69698833 | Msa0088610:three_prime_UTR | 25.0% |
| ATGAAATAGAACCGGTAATT+GGG | - | chr1_2:69696582-69696601 | None:intergenic | 30.0% | |
| TTATGAAGAAACTTGTGCTA+AGG | + | chr1_2:69696831-69696850 | Msa0088610:CDS | 30.0% | |
| TATGAAGAAACTTGTGCTAA+GGG | + | chr1_2:69696832-69696851 | Msa0088610:CDS | 30.0% | |
| GATTTCATTGACCTAGTTTA+TGG | + | chr1_2:69697092-69697111 | Msa0088610:intron | 30.0% | |
| ATTCTTAAAGAAGCCACAAA+TGG | + | chr1_2:69697371-69697390 | Msa0088610:intron | 30.0% | |
| TTCTTAAAGAAGCCACAAAT+GGG | + | chr1_2:69697372-69697391 | Msa0088610:intron | 30.0% | |
| GGATTTCAAACCATCATATA+TGG | + | chr1_2:69698371-69698390 | Msa0088610:CDS | 30.0% | |
| TTTCAAACCATCATATATGG+AGG | + | chr1_2:69698374-69698393 | Msa0088610:CDS | 30.0% | |
| TCAAATTCCTCCATATATGA+TGG | - | chr1_2:69698384-69698403 | None:intergenic | 30.0% | |
| ! | AGAGGTATGATAGAATAGAA+TGG | + | chr1_2:69698491-69698510 | Msa0088610:intron | 30.0% |
| TACACATGATTCGTAAAACA+AGG | - | chr1_2:69698580-69698599 | None:intergenic | 30.0% | |
| !! | GGAAGATTTTGATAGTAGTT+TGG | + | chr1_2:69698673-69698692 | Msa0088610:exon | 30.0% |
| TACAAAGAATGTGGTATGTA+AGG | + | chr1_2:69698823-69698842 | Msa0088610:three_prime_UTR | 30.0% | |
| !!! | TTTTGGTTTTGGTGAGAGTA+GGG | - | chr1_2:69696444-69696463 | None:intergenic | 35.0% |
| GATGAAATAGAACCGGTAAT+TGG | - | chr1_2:69696583-69696602 | None:intergenic | 35.0% | |
| AAACGAATCATTTCTTCAGG+TGG | - | chr1_2:69696811-69696830 | None:intergenic | 35.0% | |
| GAAGAGTCCAAGAAATTTGA+AGG | + | chr1_2:69697041-69697060 | Msa0088610:CDS | 35.0% | |
| TAACAAACAGGCCATAAACT+AGG | - | chr1_2:69697106-69697125 | None:intergenic | 35.0% | |
| AGATTTCTCCCAAATTGTAC+TGG | - | chr1_2:69697748-69697767 | None:intergenic | 35.0% | |
| GTACAATTTGGGAGAAATCT+AGG | + | chr1_2:69697748-69697767 | Msa0088610:CDS | 35.0% | |
| ! | TGTTGAGGTGGAAAATTTTG+TGG | - | chr1_2:69697880-69697899 | None:intergenic | 35.0% |
| TATCCACCCAAACAAAACTA+TGG | + | chr1_2:69698027-69698046 | Msa0088610:CDS | 35.0% | |
| !!! | GCTTGACCATAGTTTTGTTT+GGG | - | chr1_2:69698036-69698055 | None:intergenic | 35.0% |
| !!! | AGCTTGACCATAGTTTTGTT+TGG | - | chr1_2:69698037-69698056 | None:intergenic | 35.0% |
| !! | TGCTGTTTGGAATAGTTTTG+TGG | - | chr1_2:69698099-69698118 | None:intergenic | 35.0% |
| TATTCCAAACAGCAAACCTA+TGG | + | chr1_2:69698105-69698124 | Msa0088610:CDS | 35.0% | |
| AAAGAAGAAATTATGCGCCA+CGG | + | chr1_2:69698184-69698203 | Msa0088610:CDS | 35.0% | |
| TAATCATGCTGAAGAACAGA+CGG | + | chr1_2:69698422-69698441 | Msa0088610:CDS | 35.0% | |
| CGAATCATGTGTACTGTAAA+TGG | + | chr1_2:69698587-69698606 | Msa0088610:intron | 35.0% | |
| ! | CAATTTGGTAACTTCAGCAA+GGG | - | chr1_2:69698712-69698731 | None:intergenic | 35.0% |
| CATTGTCACATACAATGTCT+TGG | - | chr1_2:69698904-69698923 | None:intergenic | 35.0% | |
| AAGTATATCTGACGATGCCA+TGG | - | chr1_2:69696387-69696406 | None:intergenic | 40.0% | |
| !!! | GTTTTGGTTTTGGTGAGAGT+AGG | - | chr1_2:69696445-69696464 | None:intergenic | 40.0% |
| !!! | AGAGAGTAGGGTTTTGGTTT+TGG | - | chr1_2:69696455-69696474 | None:intergenic | 40.0% |
| ! | TCGAGGTTGATCTGAATGAA+CGG | - | chr1_2:69696654-69696673 | None:intergenic | 40.0% |
| AGAAGACAAGAGAGAAATCG+AGG | - | chr1_2:69696671-69696690 | None:intergenic | 40.0% | |
| AAGGTTGCGATTACAATCAC+TGG | + | chr1_2:69696749-69696768 | Msa0088610:CDS | 40.0% | |
| GTGCTAAGGGTTTCAATATC+AGG | + | chr1_2:69696845-69696864 | Msa0088610:CDS | 40.0% | |
| TGCAGTACAACTGTTTACAC+TGG | + | chr1_2:69696996-69697015 | Msa0088610:CDS | 40.0% | |
| ACAGGGTCAATGTAAGAATC+CGG | - | chr1_2:69697496-69697515 | None:intergenic | 40.0% | |
| ACAGGAGATCAGTACATTGA+AGG | + | chr1_2:69697700-69697719 | Msa0088610:intron | 40.0% | |
| TTTCTCCCAAATTGTACTGG+TGG | - | chr1_2:69697745-69697764 | None:intergenic | 40.0% | |
| CAATTTGGGAGAAATCTAGG+AGG | + | chr1_2:69697751-69697770 | Msa0088610:CDS | 40.0% | |
| AATCAATTGCCAAACAACCG+AGG | + | chr1_2:69697796-69697815 | Msa0088610:CDS | 40.0% | |
| ATCAATTGCCAAACAACCGA+GGG | + | chr1_2:69697797-69697816 | Msa0088610:CDS | 40.0% | |
| GGAATCCCTCTTACAACAAT+CGG | + | chr1_2:69697818-69697837 | Msa0088610:CDS | 40.0% | |
| GAATCCCTCTTACAACAATC+GGG | + | chr1_2:69697819-69697838 | Msa0088610:CDS | 40.0% | |
| GAATCCCGATTGTTGTAAGA+GGG | - | chr1_2:69697826-69697845 | None:intergenic | 40.0% | |
| ! | TGAGGTGGAAAATTTTGTGG+AGG | - | chr1_2:69697877-69697896 | None:intergenic | 40.0% |
| TTTCCACCTCAACAGAACTA+TGG | + | chr1_2:69697886-69697905 | Msa0088610:CDS | 40.0% | |
| ATTCCTCCACAACAAAACCT+TGG | + | chr1_2:69697922-69697941 | Msa0088610:CDS | 40.0% | |
| ! | TATTTGGTTGTTGTTGGCCA+AGG | - | chr1_2:69697942-69697961 | None:intergenic | 40.0% |
| GCCAACAACAACCAAATATC+CGG | + | chr1_2:69697944-69697963 | Msa0088610:CDS | 40.0% | |
| ACCGGATATTTGGTTGTTGT+TGG | - | chr1_2:69697948-69697967 | None:intergenic | 40.0% | |
| GCTGAATCAAACCGGATATT+TGG | - | chr1_2:69697958-69697977 | None:intergenic | 40.0% | |
| !!! | TGACCATAGTTTTGTTTGGG+TGG | - | chr1_2:69698033-69698052 | None:intergenic | 40.0% |
| ! | TGCGAGGCTGAATAATTTTG+TGG | - | chr1_2:69698060-69698079 | None:intergenic | 40.0% |
| TTTCTTCTTTCTCCTTCTCC+CGG | - | chr1_2:69698174-69698193 | None:intergenic | 40.0% | |
| TTTCTTCTTTCTCCTTGTCC+TGG | - | chr1_2:69698276-69698295 | None:intergenic | 40.0% | |
| GAATTTGAACAAGCCCAGAA+GGG | + | chr1_2:69698396-69698415 | Msa0088610:CDS | 40.0% | |
| AATTTGAACAAGCCCAGAAG+GGG | + | chr1_2:69698397-69698416 | Msa0088610:CDS | 40.0% | |
| AGCATGATTATTCCCCTTCT+GGG | - | chr1_2:69698412-69698431 | None:intergenic | 40.0% | |
| AATCATGCTGAAGAACAGAC+GGG | + | chr1_2:69698423-69698442 | Msa0088610:CDS | 40.0% | |
| AGGAGGTGGAAATCTTTGTT+GGG | - | chr1_2:69698451-69698470 | None:intergenic | 40.0% | |
| CCTCTCCAGTAAAATTGCTA+GGG | - | chr1_2:69698476-69698495 | None:intergenic | 40.0% | |
| ACCTCTCCAGTAAAATTGCT+AGG | - | chr1_2:69698477-69698496 | None:intergenic | 40.0% | |
| TGATAGTAGTTTGGATCTCC+TGG | + | chr1_2:69698682-69698701 | Msa0088610:exon | 40.0% | |
| GATAGTAGTTTGGATCTCCT+GGG | + | chr1_2:69698683-69698702 | Msa0088610:exon | 40.0% | |
| ! | GCAATTTGGTAACTTCAGCA+AGG | - | chr1_2:69698713-69698732 | None:intergenic | 40.0% |
| GATTCGATTATTGACCCCAT+TGG | - | chr1_2:69698761-69698780 | None:intergenic | 40.0% | |
| ! | CGAGGTTGATCTGAATGAAC+GGG | - | chr1_2:69696653-69696672 | None:intergenic | 45.0% |
| TCTCTCTTGTCTTCTCGCTA+CGG | + | chr1_2:69696676-69696695 | Msa0088610:CDS | 45.0% | |
| TCAGAACTCAGTCCTGAGAT+TGG | + | chr1_2:69696706-69696725 | Msa0088610:CDS | 45.0% | |
| TGTAATCGCAACCTTCGAAG+AGG | - | chr1_2:69696744-69696763 | None:intergenic | 45.0% | |
| !! | GGTGGAGGTTTGTTATCTCT+GGG | - | chr1_2:69696793-69696812 | None:intergenic | 45.0% |
| !! | AGGTGGAGGTTTGTTATCTC+TGG | - | chr1_2:69696794-69696813 | None:intergenic | 45.0% |
| CGAATCATTTCTTCAGGTGG+AGG | - | chr1_2:69696808-69696827 | None:intergenic | 45.0% | |
| GAAATCTAAGGGCCCATTTG+TGG | - | chr1_2:69697387-69697406 | None:intergenic | 45.0% | |
| ! | GGATTGTTGTGCTTTTCGAC+AGG | + | chr1_2:69697445-69697464 | Msa0088610:intron | 45.0% |
| GGCAACACAAAGATAACTCC+GGG | - | chr1_2:69697475-69697494 | None:intergenic | 45.0% | |
| CGGCAACACAAAGATAACTC+CGG | - | chr1_2:69697476-69697495 | None:intergenic | 45.0% | |
| CGGAGTTATCTTTGTGTTGC+CGG | + | chr1_2:69697474-69697493 | Msa0088610:CDS | 45.0% | |
| CTCCATACTGCTTGTTCACA+GGG | - | chr1_2:69697513-69697532 | None:intergenic | 45.0% | |
| ATTTATCGTCTCTCGCGTTC+TGG | + | chr1_2:69697552-69697571 | Msa0088610:intron | 45.0% | |
| ! | CAACTTTCGGTGTGTGATAC+AGG | + | chr1_2:69697682-69697701 | Msa0088610:intron | 45.0% |
| GACCTCCACCAGTACAATTT+GGG | + | chr1_2:69697737-69697756 | Msa0088610:CDS | 45.0% | |
| TAGGAGGAAGACGAGACTAT+CGG | + | chr1_2:69697767-69697786 | Msa0088610:CDS | 45.0% | |
| TGTTGTAAGAGGGATTCCCT+CGG | - | chr1_2:69697816-69697835 | None:intergenic | 45.0% | |
| GGAATCCCGATTGTTGTAAG+AGG | - | chr1_2:69697827-69697846 | None:intergenic | 45.0% | |
| CCATAGTTTCTACCATCCCT+TGG | - | chr1_2:69697853-69697872 | None:intergenic | 45.0% | |
| CCAAGGGATGGTAGAAACTA+TGG | + | chr1_2:69697850-69697869 | Msa0088610:CDS | 45.0% | |
| !!! | TGTTGGCCAAGGTTTTGTTG+TGG | - | chr1_2:69697931-69697950 | None:intergenic | 45.0% |
| ! | TGCTTGATCATAGCTCTGCT+GGG | - | chr1_2:69697998-69698017 | None:intergenic | 45.0% |
| AGCTATGATCAAGCACCACA+AGG | + | chr1_2:69698003-69698022 | Msa0088610:CDS | 45.0% | |
| GCTATGATCAAGCACCACAA+GGG | + | chr1_2:69698004-69698023 | Msa0088610:CDS | 45.0% | |
| !! | AGGACCATAGGTTTGCTGTT+TGG | - | chr1_2:69698112-69698131 | None:intergenic | 45.0% |
| CTTCTTCTGTCTACTTCTCC+CGG | - | chr1_2:69698225-69698244 | None:intergenic | 45.0% | |
| AAATCCCATCCACCTTCACT+AGG | - | chr1_2:69698357-69698376 | None:intergenic | 45.0% | |
| GGAATTTGAACAAGCCCAGA+AGG | + | chr1_2:69698395-69698414 | Msa0088610:CDS | 45.0% | |
| CAGCATGATTATTCCCCTTC+TGG | - | chr1_2:69698413-69698432 | None:intergenic | 45.0% | |
| ATCATGCTGAAGAACAGACG+GGG | + | chr1_2:69698424-69698443 | Msa0088610:CDS | 45.0% | |
| CAGGAGGTGGAAATCTTTGT+TGG | - | chr1_2:69698452-69698471 | None:intergenic | 45.0% | |
| CAACAAAGATTTCCACCTCC+TGG | + | chr1_2:69698450-69698469 | Msa0088610:CDS | 45.0% | |
| ! | CCCTAGCAATTTTACTGGAG+AGG | + | chr1_2:69698473-69698492 | Msa0088610:CDS | 45.0% |
| TGATTGCATGTCCTTGCCAA+TGG | + | chr1_2:69698742-69698761 | Msa0088610:three_prime_UTR | 45.0% | |
| GATTGCATGTCCTTGCCAAT+GGG | + | chr1_2:69698743-69698762 | Msa0088610:three_prime_UTR | 45.0% | |
| ATTGCATGTCCTTGCCAATG+GGG | + | chr1_2:69698744-69698763 | Msa0088610:three_prime_UTR | 45.0% | |
| GATTATTGACCCCATTGGCA+AGG | - | chr1_2:69698756-69698775 | None:intergenic | 45.0% | |
| !!! | ATAAATTAAAAAAGTAATTT+TGG | + | chr1_2:69697231-69697250 | Msa0088610:intron | 5.0% |
| ! | GGTTGGAGAGAGTAGGGTTT+TGG | - | chr1_2:69696461-69696480 | None:intergenic | 50.0% |
| AATTAGCGACGATGCCATGG+CGG | - | chr1_2:69696485-69696504 | None:intergenic | 50.0% | |
| GAGAATTAGCGACGATGCCA+TGG | - | chr1_2:69696488-69696507 | None:intergenic | 50.0% | |
| AGCTACTGCGACTTCGCTTT+CGG | + | chr1_2:69696555-69696574 | Msa0088610:CDS | 50.0% | |
| TCGCTTTCGGTCCCAATTAC+CGG | + | chr1_2:69696568-69696587 | Msa0088610:CDS | 50.0% | |
| AAATCCCCAAACGTCGTCGA+CGG | + | chr1_2:69696619-69696638 | Msa0088610:CDS | 50.0% | |
| ! | ATGGTGTCAGGACCAATCTC+AGG | - | chr1_2:69696721-69696740 | None:intergenic | 50.0% |
| ATCGCAACCTTCGAAGAGGA+TGG | - | chr1_2:69696740-69696759 | None:intergenic | 50.0% | |
| ! | TGCTTTTCGACAGGTTTGCC+CGG | + | chr1_2:69697454-69697473 | Msa0088610:intron | 50.0% |
| GACCCTGTGAACAAGCAGTA+TGG | + | chr1_2:69697508-69697527 | Msa0088610:CDS | 50.0% | |
| CCTCCATACTGCTTGTTCAC+AGG | - | chr1_2:69697514-69697533 | None:intergenic | 50.0% | |
| CCTGTGAACAAGCAGTATGG+AGG | + | chr1_2:69697511-69697530 | Msa0088610:CDS | 50.0% | |
| ! | ATTGTACTGGTGGAGGTCGA+GGG | - | chr1_2:69697735-69697754 | None:intergenic | 50.0% |
| ! | AATTGTACTGGTGGAGGTCG+AGG | - | chr1_2:69697736-69697755 | None:intergenic | 50.0% |
| CGACCTCCACCAGTACAATT+TGG | + | chr1_2:69697736-69697755 | Msa0088610:CDS | 50.0% | |
| ! | CTCCCAAATTGTACTGGTGG+AGG | - | chr1_2:69697742-69697761 | None:intergenic | 50.0% |
| ACAATCGGGATTCCATGCCA+AGG | + | chr1_2:69697833-69697852 | Msa0088610:CDS | 50.0% | |
| CAATCGGGATTCCATGCCAA+GGG | + | chr1_2:69697834-69697853 | Msa0088610:CDS | 50.0% | |
| GTTTCTACCATCCCTTGGCA+TGG | - | chr1_2:69697848-69697867 | None:intergenic | 50.0% | |
| ! | TGGCCATAGTTCTGTTGAGG+TGG | - | chr1_2:69697892-69697911 | None:intergenic | 50.0% |
| ! | GCTTGGCCATAGTTCTGTTG+AGG | - | chr1_2:69697895-69697914 | None:intergenic | 50.0% |
| GTGGAGGAATGTGTGATGCT+TGG | - | chr1_2:69697912-69697931 | None:intergenic | 50.0% | |
| !!! | TGGCCAAGGTTTTGTTGTGG+AGG | - | chr1_2:69697928-69697947 | None:intergenic | 50.0% |
| GCTGCGATGCTGAATCAAAC+CGG | - | chr1_2:69697966-69697985 | None:intergenic | 50.0% | |
| ! | GCTTGATCATAGCTCTGCTG+GGG | - | chr1_2:69697997-69698016 | None:intergenic | 50.0% |
| ! | GTGCTTGATCATAGCTCTGC+TGG | - | chr1_2:69697999-69698018 | None:intergenic | 50.0% |
| TGTTTGGGTGGATACCCTTG+TGG | - | chr1_2:69698021-69698040 | None:intergenic | 50.0% | |
| CGCTTGATTGAAGTTCTGCG+AGG | - | chr1_2:69698076-69698095 | None:intergenic | 50.0% | |
| TATCCACCACAGCAGAGCTT+TGG | + | chr1_2:69698144-69698163 | Msa0088610:CDS | 50.0% | |
| TATGCGCCGCAGCAAAATGT+TGG | + | chr1_2:69698246-69698265 | Msa0088610:CDS | 50.0% | |
| TTCTTTCTCCTTGTCCTGGC+GGG | - | chr1_2:69698272-69698291 | None:intergenic | 50.0% | |
| CTTCTTTCTCCTTGTCCTGG+CGG | - | chr1_2:69698273-69698292 | None:intergenic | 50.0% | |
| TATGCGCCACAGCAGAACTT+TGG | + | chr1_2:69698297-69698316 | Msa0088610:CDS | 50.0% | |
| AGTGGTCCAAAGTTCTGCTG+TGG | - | chr1_2:69698306-69698325 | None:intergenic | 50.0% | |
| ACAGCAGAACTTTGGACCAC+TGG | + | chr1_2:69698305-69698324 | Msa0088610:CDS | 50.0% | |
| CAGCAGAACTTTGGACCACT+GGG | + | chr1_2:69698306-69698325 | Msa0088610:CDS | 50.0% | |
| AACTTTGGACCACTGGGACA+GGG | + | chr1_2:69698312-69698331 | Msa0088610:CDS | 50.0% | |
| GGAAACTCTGTGCCTAGTGA+AGG | + | chr1_2:69698342-69698361 | Msa0088610:CDS | 50.0% | |
| AACTCTGTGCCTAGTGAAGG+TGG | + | chr1_2:69698345-69698364 | Msa0088610:CDS | 50.0% | |
| TGTGCCTAGTGAAGGTGGAT+GGG | + | chr1_2:69698350-69698369 | Msa0088610:CDS | 50.0% | |
| GTAAAATTGCTAGGGCCAGG+AGG | - | chr1_2:69698468-69698487 | None:intergenic | 50.0% | |
| CCAGTAAAATTGCTAGGGCC+AGG | - | chr1_2:69698471-69698490 | None:intergenic | 50.0% | |
| ! | CCTGGCCCTAGCAATTTTAC+TGG | + | chr1_2:69698468-69698487 | Msa0088610:CDS | 50.0% |
| AGTAGTTTGGATCTCCTGGG+AGG | + | chr1_2:69698686-69698705 | Msa0088610:three_prime_UTR | 50.0% | |
| TAACATAAGCAGGCAGCAGC+TGG | - | chr1_2:69698855-69698874 | None:intergenic | 50.0% | |
| AGAGTGATCTCAGGCTACGG+CGG | - | chr1_2:69696513-69696532 | None:intergenic | 55.0% | |
| CGGAGAGTGATCTCAGGCTA+CGG | - | chr1_2:69696516-69696535 | None:intergenic | 55.0% | |
| ! | TGAGAAGGAGTGGTGGAGGA+CGG | - | chr1_2:69696536-69696555 | None:intergenic | 55.0% |
| TAGCTGAGAAGGAGTGGTGG+AGG | - | chr1_2:69696540-69696559 | None:intergenic | 55.0% | |
| CAGTAGCTGAGAAGGAGTGG+TGG | - | chr1_2:69696543-69696562 | None:intergenic | 55.0% | |
| TCGCAGTAGCTGAGAAGGAG+TGG | - | chr1_2:69696546-69696565 | None:intergenic | 55.0% | |
| CGAAGTCGCAGTAGCTGAGA+AGG | - | chr1_2:69696551-69696570 | None:intergenic | 55.0% | |
| CCTTCGAAGAGGATGGTGTC+AGG | - | chr1_2:69696733-69696752 | None:intergenic | 55.0% | |
| CCTGACACCATCCTCTTCGA+AGG | + | chr1_2:69696730-69696749 | Msa0088610:CDS | 55.0% | |
| GAGGGATTCCCTCGGTTGTT+TGG | - | chr1_2:69697808-69697827 | None:intergenic | 55.0% | |
| ! | TGATCATAGCTCTGCTGGGG+TGG | - | chr1_2:69697994-69698013 | None:intergenic | 55.0% |
| !! | CTCTGCTGTGGTGGATACTG+TGG | - | chr1_2:69698141-69698160 | None:intergenic | 55.0% |
| !! | ACAGCAGAGCTTTGGACCAC+CGG | + | chr1_2:69698152-69698171 | Msa0088610:CDS | 55.0% |
| CTTCTTTCTCCTTCTCCCGG+TGG | - | chr1_2:69698171-69698190 | None:intergenic | 55.0% | |
| TATGCGCCACGGCAGAACTT+TGG | + | chr1_2:69698195-69698214 | Msa0088610:CDS | 55.0% | |
| ATGCGCCACGGCAGAACTTT+GGG | + | chr1_2:69698196-69698215 | Msa0088610:CDS | 55.0% | |
| CTTCTGTCTACTTCTCCCGG+TGG | - | chr1_2:69698222-69698241 | None:intergenic | 55.0% | |
| GAACTTTGGACCACTGGGAC+AGG | + | chr1_2:69698311-69698330 | Msa0088610:CDS | 55.0% | |
| CTGTGCCTAGTGAAGGTGGA+TGG | + | chr1_2:69698349-69698368 | Msa0088610:CDS | 55.0% | |
| AAATTGCTAGGGCCAGGAGG+TGG | - | chr1_2:69698465-69698484 | None:intergenic | 55.0% | |
| GGCGGTGGTTGGAGAGAGTA+GGG | - | chr1_2:69696467-69696486 | None:intergenic | 60.0% | |
| TGGCGGTGGTTGGAGAGAGT+AGG | - | chr1_2:69696468-69696487 | None:intergenic | 60.0% | |
| ACTCTCTCCAACCACCGCCA+TGG | + | chr1_2:69696468-69696487 | Msa0088610:exon | 60.0% | |
| GGAGGACGGAGAGTGATCTC+AGG | - | chr1_2:69696522-69696541 | None:intergenic | 60.0% | |
| AACGCCGTCGACGACGTTTG+GGG | - | chr1_2:69696626-69696645 | None:intergenic | 60.0% | |
| GAACGCCGTCGACGACGTTT+GGG | - | chr1_2:69696627-69696646 | None:intergenic | 60.0% | |
| TGAACGCCGTCGACGACGTT+TGG | - | chr1_2:69696628-69696647 | None:intergenic | 60.0% | |
| CGGGATTCCATGCCAAGGGA+TGG | + | chr1_2:69697838-69697857 | Msa0088610:CDS | 60.0% | |
| CTGTGGCGAAGCAGGACCAT+AGG | - | chr1_2:69698124-69698143 | None:intergenic | 60.0% | |
| GGTGGATACTGTGGCGAAGC+AGG | - | chr1_2:69698132-69698151 | None:intergenic | 60.0% | |
| GGTCCAAAGCTCTGCTGTGG+TGG | - | chr1_2:69698150-69698169 | None:intergenic | 60.0% | |
| GGTGGTCCAAAGCTCTGCTG+TGG | - | chr1_2:69698153-69698172 | None:intergenic | 60.0% | |
| !! | CAGCAGAGCTTTGGACCACC+GGG | + | chr1_2:69698153-69698172 | Msa0088610:CDS | 60.0% |
| !! | AGCTTTGGACCACCGGGAGA+AGG | + | chr1_2:69698159-69698178 | Msa0088610:CDS | 60.0% |
| ACGGCAGAACTTTGGGCCAC+CGG | + | chr1_2:69698203-69698222 | Msa0088610:CDS | 60.0% | |
| ! | GGCGGGCCAACATTTTGCTG+CGG | - | chr1_2:69698255-69698274 | None:intergenic | 60.0% |
| CAGCAAAATGTTGGCCCGCC+AGG | + | chr1_2:69698255-69698274 | Msa0088610:CDS | 60.0% | |
| AATGTTGGCCCGCCAGGACA+AGG | + | chr1_2:69698261-69698280 | Msa0088610:CDS | 60.0% | |
| CCTCTTTCTCCCTGTCCCAG+TGG | - | chr1_2:69698324-69698343 | None:intergenic | 60.0% | |
| CCACTGGGACAGGGAGAAAG+AGG | + | chr1_2:69698321-69698340 | Msa0088610:CDS | 60.0% | |
| AACTTCAGCAAGGGCCTCCC+AGG | - | chr1_2:69698703-69698722 | None:intergenic | 60.0% | |
| GACGATGCCATGGCGGTGGT+TGG | - | chr1_2:69696478-69696497 | None:intergenic | 65.0% | |
| TAGCGACGATGCCATGGCGG+TGG | - | chr1_2:69696482-69696501 | None:intergenic | 65.0% | |
| GTGATCTCAGGCTACGGCGG+AGG | - | chr1_2:69696510-69696529 | None:intergenic | 65.0% | |
| GGTGGCCCAAAGTTCTGCCG+TGG | - | chr1_2:69698204-69698223 | None:intergenic | 65.0% | |
| CGGCAGAACTTTGGGCCACC+GGG | + | chr1_2:69698204-69698223 | Msa0088610:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 69696384 | 69699012 | 69696384 | ID=Msa0088610;Name=Msa0088610 |
| chr1_2 | mRNA | 69696384 | 69699012 | 69696384 | ID=Msa0088610-mRNA-1;Parent=Msa0088610;Name=Msa0088610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=103|1|1|1|1|1|5|328|448 |
| chr1_2 | exon | 69696384 | 69696866 | 69696384 | ID=Msa0088610-mRNA-1:exon:23985;Parent=Msa0088610-mRNA-1 |
| chr1_2 | exon | 69696965 | 69697062 | 69696965 | ID=Msa0088610-mRNA-1:exon:23986;Parent=Msa0088610-mRNA-1 |
| chr1_2 | exon | 69697467 | 69697532 | 69697467 | ID=Msa0088610-mRNA-1:exon:23987;Parent=Msa0088610-mRNA-1 |
| chr1_2 | exon | 69697704 | 69698494 | 69697704 | ID=Msa0088610-mRNA-1:exon:23988;Parent=Msa0088610-mRNA-1 |
| chr1_2 | exon | 69698673 | 69699012 | 69698673 | ID=Msa0088610-mRNA-1:exon:23989;Parent=Msa0088610-mRNA-1 |
| chr1_2 | five_prime_UTR | 69696384 | 69696486 | 69696384 | ID=Msa0088610-mRNA-1:five_prime_utr;Parent=Msa0088610-mRNA-1 |
| chr1_2 | CDS | 69696487 | 69696866 | 69696487 | ID=Msa0088610-mRNA-1:cds;Parent=Msa0088610-mRNA-1 |
| chr1_2 | CDS | 69696965 | 69697062 | 69696965 | ID=Msa0088610-mRNA-1:cds;Parent=Msa0088610-mRNA-1 |
| chr1_2 | CDS | 69697467 | 69697532 | 69697467 | ID=Msa0088610-mRNA-1:cds;Parent=Msa0088610-mRNA-1 |
| chr1_2 | CDS | 69697704 | 69698494 | 69697704 | ID=Msa0088610-mRNA-1:cds;Parent=Msa0088610-mRNA-1 |
| chr1_2 | CDS | 69698673 | 69698684 | 69698673 | ID=Msa0088610-mRNA-1:cds;Parent=Msa0088610-mRNA-1 |
| chr1_2 | three_prime_UTR | 69698685 | 69699012 | 69698685 | ID=Msa0088610-mRNA-1:three_prime_utr;Parent=Msa0088610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
