Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159030 | XP_003624695.1 | 98.872 | 266 | 3 | 0 | 1 | 266 | 1 | 266 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159030 | sp|Q2G6G9|RL25_NOVAD | 29.480 | 173 | 100 | 3 | 56 | 228 | 9 | 159 | 3.61e-19 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159030 | Q2HVB5 | 98.872 | 266 | 3 | 0 | 1 | 266 | 1 | 266 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088610 | Msa1159030 | 0.820045 | 8.439471e-53 | -8.615850e-47 |
| Msa0621210 | Msa1159030 | 0.810814 | 9.557209e-51 | -8.615850e-47 |
| Msa0743920 | Msa1159030 | 0.806216 | 9.160661e-50 | -8.615850e-47 |
| Msa0748180 | Msa1159030 | 0.809079 | 2.259147e-50 | -8.615850e-47 |
| Msa0139110 | Msa1159030 | 0.804503 | 2.093484e-49 | -8.615850e-47 |
| Msa1071040 | Msa1159030 | 0.979431 | 5.947909e-148 | -8.615850e-47 |
| Msa0291960 | Msa1159030 | 0.853125 | 2.938737e-61 | -8.615850e-47 |
| Msa0329930 | Msa1159030 | 0.867591 | 1.222715e-65 | -8.615850e-47 |
| Msa0333220 | Msa1159030 | 0.849296 | 3.542183e-60 | -8.615850e-47 |
| Msa1118440 | Msa1159030 | 0.982084 | 3.432800e-154 | -8.615850e-47 |
| Msa1159030 | Msa1279780 | 0.818734 | 1.679230e-52 | -8.615850e-47 |
| Msa1159030 | Msa1321200 | 0.828761 | 7.512514e-55 | -8.615850e-47 |
| Msa1159030 | Msa1340560 | 0.965634 | 7.346457e-125 | -8.615850e-47 |
| Msa1159030 | Msa1428870 | 0.834539 | 2.827418e-56 | -8.615850e-47 |
| Msa0864230 | Msa1159030 | 0.808371 | 3.200522e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159030 | MtrunA17_Chr7g0253991 | 98.872 | 266 | 3 | 0 | 1 | 266 | 1 | 266 | 0.0 | 532 |
| Msa1159030 | MtrunA17_Chr8g0374611 | 37.981 | 208 | 116 | 3 | 53 | 253 | 32 | 233 | 7.56e-43 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159030 | AT4G23620.1 | 66.794 | 262 | 77 | 3 | 5 | 265 | 7 | 259 | 2.72e-121 | 347 |
| Msa1159030 | AT4G23620.2 | 63.636 | 275 | 77 | 4 | 5 | 265 | 7 | 272 | 1.09e-117 | 338 |
| Msa1159030 | AT5G66860.1 | 40.476 | 210 | 112 | 4 | 52 | 254 | 34 | 237 | 1.68e-44 | 151 |
Find 103 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGCTGTTTGTAAAATTA+TGG | 0.157665 | 7_4:+48516271 | Msa1159030:CDS |
| CTTTGAATGTGACATTTATA+AGG | 0.212828 | 7_4:+48512486 | Msa1159030:CDS |
| CTTAAATCCACATCAATATA+TGG | 0.221639 | 7_4:-48516170 | None:intergenic |
| TTACAAACAGCTTCATCTTT+TGG | 0.245961 | 7_4:-48516263 | None:intergenic |
| GTAACTACTTATTGTATCTT+TGG | 0.251706 | 7_4:+48516331 | Msa1159030:exon |
| TCGATGATGTCTTCGTCATT+AGG | 0.273733 | 7_4:-48512326 | None:intergenic |
| CCATCTTATTAGTTGATTCT+TGG | 0.275557 | 7_4:+48516407 | Msa1159030:three_prime_UTR |
| TCGTACTTTGGGTTAGGTTT+TGG | 0.283728 | 7_4:-48512059 | None:intergenic |
| CGATGATGTCTTCGTCATTA+GGG | 0.292294 | 7_4:-48512325 | None:intergenic |
| TACCGACCTTGTATGTTTAT+CGG | 0.318046 | 7_4:+48516567 | Msa1159030:three_prime_UTR |
| GGATGGTTTCGTCGTACTTT+GGG | 0.321382 | 7_4:-48512070 | None:intergenic |
| GCCATTCCCCGCAAAGATTC+CGG | 0.324964 | 7_4:+48512095 | Msa1159030:CDS |
| GGTTTGAATCTGAATCAAAT+TGG | 0.344633 | 7_4:-48512304 | None:intergenic |
| AGTGGCGGCGGTGGAGGAAG+GGG | 0.363667 | 7_4:-48511956 | None:intergenic |
| GAAAGCCGTCGAGGTAGGTT+AGG | 0.367957 | 7_4:-48512037 | None:intergenic |
| TTTGAATGTGACATTTATAA+GGG | 0.368199 | 7_4:+48512487 | Msa1159030:CDS |
| ACTTGCTCAATATAAATGTT+TGG | 0.372718 | 7_4:-48516646 | None:intergenic |
| TGGCTCTGGAGTGTGGATTA+AGG | 0.373199 | 7_4:-48511997 | None:intergenic |
| GGAAGGGGCGGAGGAGTGTG+CGG | 0.375525 | 7_4:-48511941 | None:intergenic |
| GGCGGTGGAGGAAGGGGCGG+AGG | 0.376055 | 7_4:-48511950 | None:intergenic |
| TGGCGGAGAAGTGGCGGCGG+TGG | 0.378382 | 7_4:-48511965 | None:intergenic |
| CCGTTCGTTCCGATCAGATC+AGG | 0.382550 | 7_4:+48512216 | Msa1159030:CDS |
| CGGAGAAGTGGCGGCGGTGG+AGG | 0.383273 | 7_4:-48511962 | None:intergenic |
| GAAGCTGTTTGTAAAATTAT+GGG | 0.386857 | 7_4:+48516272 | Msa1159030:CDS |
| GTTTCGTCGTACTTTGGGTT+AGG | 0.390733 | 7_4:-48512065 | None:intergenic |
| TGTAGTATGTGGTCTGGCTC+TGG | 0.392426 | 7_4:-48512011 | None:intergenic |
| GATCACCCATGAGCACCTTC+TGG | 0.393208 | 7_4:-48516208 | None:intergenic |
| GCCGGAATCTTTGCGGGGAA+TGG | 0.394527 | 7_4:-48512096 | None:intergenic |
| AGGATGGTTTCGTCGTACTT+TGG | 0.396008 | 7_4:-48512071 | None:intergenic |
| GCGGCCAACTTTACGCTCCT+TGG | 0.414214 | 7_4:-48512132 | None:intergenic |
| GTTGTGTTTCAGAAACCCTT+TGG | 0.419943 | 7_4:-48516295 | None:intergenic |
| GTGGTGAAGAGAAAGGGTTT+TGG | 0.428880 | 7_4:-48511906 | None:intergenic |
| TCATCTCCTCTGAATACAAT+AGG | 0.430682 | 7_4:-48512542 | None:intergenic |
| TTAAATCCACATCAATATAT+GGG | 0.431795 | 7_4:-48516169 | None:intergenic |
| GAAGTGGCGGCGGTGGAGGA+AGG | 0.435729 | 7_4:-48511958 | None:intergenic |
| GAAGGGGCGGAGGAGTGTGC+GGG | 0.438831 | 7_4:-48511940 | None:intergenic |
| AGAGGAGATGATATATCTCC+TGG | 0.439796 | 7_4:+48512554 | Msa1159030:CDS |
| AAGGGGCGGAGGAGTGTGCG+GGG | 0.441342 | 7_4:-48511939 | None:intergenic |
| TCCGAGCATCGTCTTCGAAC+AGG | 0.442178 | 7_4:+48512157 | Msa1159030:CDS |
| TGACAGATTCATTTGAAAGC+TGG | 0.443599 | 7_4:+48512452 | Msa1159030:intron |
| AAAGCCGTCGAGGTAGGTTA+GGG | 0.451004 | 7_4:-48512036 | None:intergenic |
| AGGGGTTGTAGTATGTGGTC+TGG | 0.453043 | 7_4:-48512017 | None:intergenic |
| AGATACAATAAGTAGTTACT+TGG | 0.457131 | 7_4:-48516327 | None:intergenic |
| TGTGGGCCAGAAGGTGCTCA+TGG | 0.458165 | 7_4:+48516202 | Msa1159030:CDS |
| ATCTAACCTTTCTTGAGTCC+AGG | 0.460897 | 7_4:-48512572 | None:intergenic |
| GGCGGCGGTGGAGGAAGGGG+CGG | 0.466194 | 7_4:-48511953 | None:intergenic |
| TGATGTGGATTTAAGTGAGT+TGG | 0.469740 | 7_4:+48516178 | Msa1159030:CDS |
| TGCATTGTGGTGAAGAGAAA+GGG | 0.471889 | 7_4:-48511912 | None:intergenic |
| TGAGGAAAGTTGAGAGGAGA+GGG | 0.475606 | 7_4:-48511864 | None:intergenic |
| TAAGGGCTCCGTCAGATGCT+TGG | 0.483656 | 7_4:+48512504 | Msa1159030:CDS |
| TGTAGAGCTTTGTGTAACTC+AGG | 0.486448 | 7_4:-48516521 | None:intergenic |
| AGGGGCGGAGGAGTGTGCGG+GGG | 0.489766 | 7_4:-48511938 | None:intergenic |
| CAGTTATTGTGAACAAAACT+AGG | 0.490000 | 7_4:-48516456 | None:intergenic |
| TCCTGTTCGAAGACGATGCT+CGG | 0.491020 | 7_4:-48512158 | None:intergenic |
| CTTATAAATGTCACATTCAA+AGG | 0.498069 | 7_4:-48512485 | None:intergenic |
| CCAAGAATCAACTAATAAGA+TGG | 0.498429 | 7_4:-48516407 | None:intergenic |
| ACTACTTATTGTATCTTTGG+TGG | 0.503503 | 7_4:+48516334 | Msa1159030:exon |
| TTGTAAAATTATGGGCCAAA+GGG | 0.504390 | 7_4:+48516280 | Msa1159030:CDS |
| CGGTAGTGAGGAAAGTTGAG+AGG | 0.505122 | 7_4:-48511870 | None:intergenic |
| GGATTTAAGTGAGTTGGATG+TGG | 0.507332 | 7_4:+48516184 | Msa1159030:CDS |
| GCCAACTTTACGCTCCTTGG+CGG | 0.509358 | 7_4:-48512129 | None:intergenic |
| ATGCATTGTGGTGAAGAGAA+AGG | 0.514185 | 7_4:-48511913 | None:intergenic |
| AAGTGGCGGCGGTGGAGGAA+GGG | 0.515170 | 7_4:-48511957 | None:intergenic |
| ATATCTCCTGGACTCAAGAA+AGG | 0.519847 | 7_4:+48512566 | Msa1159030:CDS |
| TTTGTAAAATTATGGGCCAA+AGG | 0.522313 | 7_4:+48516279 | Msa1159030:CDS |
| TCCGCCAAGGAGCGTAAAGT+TGG | 0.526882 | 7_4:+48512128 | Msa1159030:CDS |
| TGTGGTCTGGCTCTGGAGTG+TGG | 0.529733 | 7_4:-48512004 | None:intergenic |
| CTTCCTTGAATACCATCAAA+AGG | 0.531879 | 7_4:+48516111 | Msa1159030:CDS |
| ATTGGTGAAGAACTTGAAGA+TGG | 0.535306 | 7_4:-48512286 | None:intergenic |
| AGGTTAGGGGTTGTAGTATG+TGG | 0.536070 | 7_4:-48512022 | None:intergenic |
| GAAGATGGAAGAGGCGTGAG+AGG | 0.537822 | 7_4:-48512271 | None:intergenic |
| GATCGGAACGAACGGAAATG+AGG | 0.538932 | 7_4:-48512208 | None:intergenic |
| GTGAGGAAAGTTGAGAGGAG+AGG | 0.545248 | 7_4:-48511865 | None:intergenic |
| TTTGCGGGGAATGGCGAGGA+TGG | 0.546947 | 7_4:-48512087 | None:intergenic |
| CGTTTGCGATGGCGGAGAAG+TGG | 0.551652 | 7_4:-48511974 | None:intergenic |
| GAAGAGGCGTGAGAGGAAGA+AGG | 0.552327 | 7_4:-48512264 | None:intergenic |
| GTGGATTAAGGCGTTTGCGA+TGG | 0.554431 | 7_4:-48511985 | None:intergenic |
| GGCGTGAGAGGAAGAAGGAA+CGG | 0.555683 | 7_4:-48512259 | None:intergenic |
| TTGCGATGGCGGAGAAGTGG+CGG | 0.560803 | 7_4:-48511971 | None:intergenic |
| TAAATCCACATCAATATATG+GGG | 0.566905 | 7_4:-48516168 | None:intergenic |
| GAAGAACTTGAAGATGGAAG+AGG | 0.567823 | 7_4:-48512280 | None:intergenic |
| GACGTTCCTATTGTATTCAG+AGG | 0.569099 | 7_4:+48512536 | Msa1159030:CDS |
| GGAAGAAGGAACGGCCGAGA+TGG | 0.569332 | 7_4:-48512250 | None:intergenic |
| GATTAAGGCGTTTGCGATGG+CGG | 0.573246 | 7_4:-48511982 | None:intergenic |
| ATCGTCTTCGAACAGGAAGA+CGG | 0.582891 | 7_4:+48512164 | Msa1159030:CDS |
| AGGAAACTCGTTAACCATCT+CGG | 0.585561 | 7_4:+48512236 | Msa1159030:CDS |
| GTGGGCCAGAAGGTGCTCAT+GGG | 0.586262 | 7_4:+48516203 | Msa1159030:CDS |
| CCTGATCTGATCGGAACGAA+CGG | 0.594704 | 7_4:-48512216 | None:intergenic |
| AACGAGTTTCCTGATCTGAT+CGG | 0.599141 | 7_4:-48512225 | None:intergenic |
| CGATGGCGGAGAAGTGGCGG+CGG | 0.608841 | 7_4:-48511968 | None:intergenic |
| CGAAGACGATGCTCGGAACG+CGG | 0.618391 | 7_4:-48512151 | None:intergenic |
| TGAGTTGGATGTGGGCCAGA+AGG | 0.624190 | 7_4:+48516193 | Msa1159030:CDS |
| GATTTAAGTGAGTTGGATGT+GGG | 0.629473 | 7_4:+48516185 | Msa1159030:CDS |
| ACTTTCAACCAAGCATCTGA+CGG | 0.637239 | 7_4:-48512512 | None:intergenic |
| AATCTTTGCGGGGAATGGCG+AGG | 0.644316 | 7_4:-48512091 | None:intergenic |
| ATCCGATAAACATACAAGGT+CGG | 0.652992 | 7_4:-48516569 | None:intergenic |
| ACATATCCGATAAACATACA+AGG | 0.655811 | 7_4:-48516573 | None:intergenic |
| AAGCCGTCGAGGTAGGTTAG+GGG | 0.664900 | 7_4:-48512035 | None:intergenic |
| GAACAGGAAGACGGTCAGCA+CGG | 0.669527 | 7_4:+48512173 | Msa1159030:CDS |
| CAACCCCTAACCTACCTCGA+CGG | 0.677651 | 7_4:+48512032 | Msa1159030:CDS |
| AAATCCACATCAATATATGG+GGG | 0.690982 | 7_4:-48516167 | None:intergenic |
| ACTCAAATGCATACACTGCG+AGG | 0.694977 | 7_4:-48512365 | None:intergenic |
| CAGGAAGACGGTCAGCACGG+TGG | 0.739041 | 7_4:+48512176 | Msa1159030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTATTTTATTGCA+TGG | - | chr7_4:48512996-48513015 | None:intergenic | 10.0% |
| !!! | ATCAATTAATTGTAATTTTA+TGG | + | chr7_4:48513227-48513246 | Msa1159030:intron | 10.0% |
| !!! | AGATTTTTTATAATGAAAAT+AGG | - | chr7_4:48513585-48513604 | None:intergenic | 10.0% |
| !! | ATCATCATTATAAAAAATAT+CGG | - | chr7_4:48514704-48514723 | None:intergenic | 10.0% |
| !! | AAATGCAAATTGATATTAAA+GGG | - | chr7_4:48513994-48514013 | None:intergenic | 15.0% |
| !! | AAAATGCAAATTGATATTAA+AGG | - | chr7_4:48513995-48514014 | None:intergenic | 15.0% |
| !! | ATTTGAAAACATAAAATTGA+TGG | + | chr7_4:48514244-48514263 | Msa1159030:intron | 15.0% |
| !! | AATATATAAAACCAATTTCA+TGG | + | chr7_4:48514341-48514360 | Msa1159030:intron | 15.0% |
| !! | AATTCAGTTACTAATTTAAT+GGG | - | chr7_4:48514411-48514430 | None:intergenic | 15.0% |
| !! | AAATTCAGTTACTAATTTAA+TGG | - | chr7_4:48514412-48514431 | None:intergenic | 15.0% |
| !! | AATATTCACTTAAAATTGAA+TGG | - | chr7_4:48514513-48514532 | None:intergenic | 15.0% |
| !! | TATATATATAGTTAGTACTT+AGG | - | chr7_4:48514588-48514607 | None:intergenic | 15.0% |
| !! | TCATCATTATAAAAAATATC+GGG | - | chr7_4:48514703-48514722 | None:intergenic | 15.0% |
| !! | TTAGTATTTGGTAAATAAAT+AGG | + | chr7_4:48514984-48515003 | Msa1159030:intron | 15.0% |
| !! | ATAATCATTTAATGTTTGAA+TGG | + | chr7_4:48515087-48515106 | Msa1159030:intron | 15.0% |
| !! | AATAATGAAAACATTAATAG+TGG | - | chr7_4:48515638-48515657 | None:intergenic | 15.0% |
| !! | TCTTTGAATAATTGAATTGA+TGG | + | chr7_4:48512414-48512433 | Msa1159030:intron | 20.0% |
| !! | TTTGAATGTGACATTTATAA+GGG | + | chr7_4:48512487-48512506 | Msa1159030:CDS | 20.0% |
| !! | AAAAAACAAACACAAATTGT+CGG | - | chr7_4:48512738-48512757 | None:intergenic | 20.0% |
| !! | GATTGAATTATAGTAAACTA+AGG | + | chr7_4:48513029-48513048 | Msa1159030:intron | 20.0% |
| !! | TTATAGTAAACTAAGGTTAA+TGG | + | chr7_4:48513036-48513055 | Msa1159030:intron | 20.0% |
| !! | AATGCAAATTGATATTAAAG+GGG | - | chr7_4:48513993-48514012 | None:intergenic | 20.0% |
| !!! | AAAGATTTAGACCAATTTTA+TGG | - | chr7_4:48514297-48514316 | None:intergenic | 20.0% |
| !!! | ATTAAATTGGTTTAATCTAG+AGG | - | chr7_4:48514541-48514560 | None:intergenic | 20.0% |
| !! | TCTAGATTAAACCAATTTAA+TGG | + | chr7_4:48514540-48514559 | Msa1159030:intron | 20.0% |
| !! | ACTAACTATATATATATGCT+AGG | + | chr7_4:48514592-48514611 | Msa1159030:intron | 20.0% |
| !! | TTATAATGATGATTAGCATT+TGG | + | chr7_4:48514711-48514730 | Msa1159030:intron | 20.0% |
| !! | TTATCATGATAGTTAGTATT+TGG | + | chr7_4:48514972-48514991 | Msa1159030:intron | 20.0% |
| !! | ACTCTGTCAAAAAAAAAAAT+AGG | + | chr7_4:48515013-48515032 | Msa1159030:intron | 20.0% |
| !! | TAACATATAGTATGTATTGT+AGG | + | chr7_4:48515278-48515297 | Msa1159030:intron | 20.0% |
| !! | ATACAAAGTAAGATTTGTAT+CGG | + | chr7_4:48515301-48515320 | Msa1159030:intron | 20.0% |
| !!! | TTCAAAAATTGATTTCCTTA+TGG | + | chr7_4:48515845-48515864 | Msa1159030:intron | 20.0% |
| !! | ATATATTAATATCCATACCA+AGG | - | chr7_4:48515987-48516006 | None:intergenic | 20.0% |
| !! | TTAAATCCACATCAATATAT+GGG | - | chr7_4:48516172-48516191 | None:intergenic | 20.0% |
| ! | GATTAAACTCACAAATCAAA+AGG | - | chr7_4:48512396-48512415 | None:intergenic | 25.0% |
| !!! | ATTGAATTGATGGATTGTAT+TGG | + | chr7_4:48512424-48512443 | Msa1159030:intron | 25.0% |
| ! | CTTATAAATGTCACATTCAA+AGG | - | chr7_4:48512488-48512507 | None:intergenic | 25.0% |
| ! | CTTTGAATGTGACATTTATA+AGG | + | chr7_4:48512486-48512505 | Msa1159030:CDS | 25.0% |
| ! | ACCAAAAATGTCACAAATTA+GGG | - | chr7_4:48512603-48512622 | None:intergenic | 25.0% |
| !!! | TTTTTGGTGTAATAATGTAC+TGG | + | chr7_4:48512615-48512634 | Msa1159030:intron | 25.0% |
| ! | AATTCAGTAAAGCTCAATTA+CGG | - | chr7_4:48513085-48513104 | None:intergenic | 25.0% |
| ! | TACAAAATCTAATATCCCTT+TGG | + | chr7_4:48513104-48513123 | Msa1159030:intron | 25.0% |
| ! | AGAAGGAAAAATTGTAAACA+TGG | - | chr7_4:48513155-48513174 | None:intergenic | 25.0% |
| !!! | TGATTTTTTGTCATTCTCAA+CGG | - | chr7_4:48513211-48513230 | None:intergenic | 25.0% |
| ! | AATCTTACAAATGAATCCAT+TGG | - | chr7_4:48513295-48513314 | None:intergenic | 25.0% |
| ! | TTCATTTGTAAGATTTGTCA+TGG | + | chr7_4:48513300-48513319 | Msa1159030:intron | 25.0% |
| ! | TTTGTAATTGTATGTCTGTA+TGG | - | chr7_4:48513385-48513404 | None:intergenic | 25.0% |
| ! | CGTAGTTTACTATAATTCAA+TGG | + | chr7_4:48513615-48513634 | Msa1159030:intron | 25.0% |
| ! | TGTATGCATATATATGAGTT+AGG | + | chr7_4:48513746-48513765 | Msa1159030:intron | 25.0% |
| !!! | GTAGGTTTTTGTTTTATTCT+TGG | + | chr7_4:48513869-48513888 | Msa1159030:intron | 25.0% |
| !!! | ATAAGAATTTGTTGGAATAG+AGG | - | chr7_4:48513948-48513967 | None:intergenic | 25.0% |
| ! | CTATTCCAACAAATTCTTAT+AGG | + | chr7_4:48513948-48513967 | Msa1159030:intron | 25.0% |
| ! | CAATTCCTATAAGAATTTGT+TGG | - | chr7_4:48513956-48513975 | None:intergenic | 25.0% |
| ! | ATGCAAATTGATATTAAAGG+GGG | - | chr7_4:48513992-48514011 | None:intergenic | 25.0% |
| !!! | AATTTGCATTTTAAGTCACA+AGG | + | chr7_4:48514003-48514022 | Msa1159030:intron | 25.0% |
| ! | CAATTACTAAAAGCGAAATT+TGG | + | chr7_4:48514056-48514075 | Msa1159030:intron | 25.0% |
| !! | TTTTTATCTGTCCAAAGAAA+GGG | - | chr7_4:48514137-48514156 | None:intergenic | 25.0% |
| !!! | TTTTTTATCTGTCCAAAGAA+AGG | - | chr7_4:48514138-48514157 | None:intergenic | 25.0% |
| ! | AACTTAAAAATTTGTACGAC+AGG | - | chr7_4:48514167-48514186 | None:intergenic | 25.0% |
| !!! | CGTACAAATTTTTAAGTTCA+TGG | + | chr7_4:48514169-48514188 | Msa1159030:intron | 25.0% |
| !! | AAACATAAAATTGATGGCAA+CGG | + | chr7_4:48514250-48514269 | Msa1159030:intron | 25.0% |
| ! | TTTAAGAGGATCCATAAAAT+TGG | + | chr7_4:48514283-48514302 | Msa1159030:intron | 25.0% |
| ! | TTTCATCAAAACCATGAAAT+TGG | - | chr7_4:48514355-48514374 | None:intergenic | 25.0% |
| ! | TGATGAAATTGAAAACTTCA+TGG | + | chr7_4:48514367-48514386 | Msa1159030:intron | 25.0% |
| ! | AACTATATATATATGCTAGG+TGG | + | chr7_4:48514595-48514614 | Msa1159030:intron | 25.0% |
| ! | TTAGCATTTGGTAGATAAAT+AGG | + | chr7_4:48514723-48514742 | Msa1159030:intron | 25.0% |
| !! | GATAAATAGGTTTAAGACTT+TGG | + | chr7_4:48514736-48514755 | Msa1159030:intron | 25.0% |
| ! | ATAACCATTTAATGTATGAG+TGG | + | chr7_4:48514797-48514816 | Msa1159030:intron | 25.0% |
| ! | ATAACCACTCATACATTAAA+TGG | - | chr7_4:48514804-48514823 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGACAGAGTCT+TGG | - | chr7_4:48515011-48515030 | None:intergenic | 25.0% |
| !! | AAAAAATAGGTCTAAGACTT+TGG | + | chr7_4:48515026-48515045 | Msa1159030:intron | 25.0% |
| ! | TAGTTTATACAAAGATCATG+CGG | - | chr7_4:48515161-48515180 | None:intergenic | 25.0% |
| !! | TAAGTCCTTGTTTATATGTT+TGG | - | chr7_4:48515253-48515272 | None:intergenic | 25.0% |
| ! | TTTAGTCAATAAAACGCAAA+AGG | - | chr7_4:48515425-48515444 | None:intergenic | 25.0% |
| ! | AAGTCAGAAATGTTCAATAA+TGG | - | chr7_4:48515930-48515949 | None:intergenic | 25.0% |
| ! | TAAATCCACATCAATATATG+GGG | - | chr7_4:48516171-48516190 | None:intergenic | 25.0% |
| ! | CTTAAATCCACATCAATATA+TGG | - | chr7_4:48516173-48516192 | None:intergenic | 25.0% |
| ! | TGAAGCTGTTTGTAAAATTA+TGG | + | chr7_4:48516271-48516290 | Msa1159030:CDS | 25.0% |
| ! | GAAGCTGTTTGTAAAATTAT+GGG | + | chr7_4:48516272-48516291 | Msa1159030:CDS | 25.0% |
| ! | AGATACAATAAGTAGTTACT+TGG | - | chr7_4:48516330-48516349 | None:intergenic | 25.0% |
| ! | GTAACTACTTATTGTATCTT+TGG | + | chr7_4:48516331-48516350 | Msa1159030:exon | 25.0% |
| ! | ACTTGCTCAATATAAATGTT+TGG | - | chr7_4:48516649-48516668 | None:intergenic | 25.0% |
| GGTTTGAATCTGAATCAAAT+TGG | - | chr7_4:48512307-48512326 | None:intergenic | 30.0% | |
| CAAAAATGTCACAAATTAGG+GGG | - | chr7_4:48512601-48512620 | None:intergenic | 30.0% | |
| CCAAAAATGTCACAAATTAG+GGG | - | chr7_4:48512602-48512621 | None:intergenic | 30.0% | |
| CACCAAAAATGTCACAAATT+AGG | - | chr7_4:48512604-48512623 | None:intergenic | 30.0% | |
| !! | AGGAGTATTTAACTCTAAAG+AGG | - | chr7_4:48512788-48512807 | None:intergenic | 30.0% |
| TTGTTTGTCACAATAGTGAA+CGG | - | chr7_4:48512828-48512847 | None:intergenic | 30.0% | |
| GGTTTGAGCTAATGAATTAA+AGG | + | chr7_4:48512891-48512910 | Msa1159030:intron | 30.0% | |
| AGCTAATGAATTAAAGGAGT+TGG | + | chr7_4:48512897-48512916 | Msa1159030:intron | 30.0% | |
| GCTAATGAATTAAAGGAGTT+GGG | + | chr7_4:48512898-48512917 | Msa1159030:intron | 30.0% | |
| AAATTGTAAACATGGTAGGA+GGG | - | chr7_4:48513147-48513166 | None:intergenic | 30.0% | |
| AAAATTGTAAACATGGTAGG+AGG | - | chr7_4:48513148-48513167 | None:intergenic | 30.0% | |
| GGAAAAATTGTAAACATGGT+AGG | - | chr7_4:48513151-48513170 | None:intergenic | 30.0% | |
| ATCGCAAAATGATACATCAA+TGG | - | chr7_4:48513350-48513369 | None:intergenic | 30.0% | |
| ! | ATTGATGTATCATTTTGCGA+TGG | + | chr7_4:48513349-48513368 | Msa1159030:intron | 30.0% |
| GCACAAAATTATCACAAACA+TGG | + | chr7_4:48513438-48513457 | Msa1159030:intron | 30.0% | |
| CAAAATTATCACAAACATGG+CGG | + | chr7_4:48513441-48513460 | Msa1159030:intron | 30.0% | |
| ACAAATTAGGAGAGAAATCA+GGG | - | chr7_4:48513507-48513526 | None:intergenic | 30.0% | |
| AACAAATTAGGAGAGAAATC+AGG | - | chr7_4:48513508-48513527 | None:intergenic | 30.0% | |
| !! | TCCTAATTTGTTTGCCAAAA+CGG | + | chr7_4:48513516-48513535 | Msa1159030:intron | 30.0% |
| ! | AAAATTTGATATCCCCGTTT+TGG | - | chr7_4:48513533-48513552 | None:intergenic | 30.0% |
| GAAACGAGAACAATTAATCA+TGG | - | chr7_4:48513641-48513660 | None:intergenic | 30.0% | |
| TCGCTCCCTATATATATTAA+AGG | + | chr7_4:48513689-48513708 | Msa1159030:intron | 30.0% | |
| CGCTCCCTATATATATTAAA+GGG | + | chr7_4:48513690-48513709 | Msa1159030:intron | 30.0% | |
| GCTGCCCTTTAATATATATA+GGG | - | chr7_4:48513697-48513716 | None:intergenic | 30.0% | |
| TATGCATACAATACACCAAA+TGG | - | chr7_4:48513736-48513755 | None:intergenic | 30.0% | |
| GAATAGAGGTGAAATTTCAT+CGG | - | chr7_4:48513934-48513953 | None:intergenic | 30.0% | |
| AAATTGATATTAAAGGGGGA+AGG | - | chr7_4:48513988-48514007 | None:intergenic | 30.0% | |
| !! | AGCTAATTGAAGAGAGTATT+AGG | + | chr7_4:48514029-48514048 | Msa1159030:intron | 30.0% |
| TAAAAGCGAAATTTGGACAA+AGG | + | chr7_4:48514063-48514082 | Msa1159030:intron | 30.0% | |
| ATGGATCCTCTTAAAGATTT+AGG | - | chr7_4:48514278-48514297 | None:intergenic | 30.0% | |
| TTAGTAACTGAATTTCTGTG+TGG | + | chr7_4:48514417-48514436 | Msa1159030:intron | 30.0% | |
| CCAAATCTCATCCATTAAAT+TGG | - | chr7_4:48514554-48514573 | None:intergenic | 30.0% | |
| ! | CCAATTTAATGGATGAGATT+TGG | + | chr7_4:48514551-48514570 | Msa1159030:intron | 30.0% |
| ATAAGCTGTTTAATGCTTAC+AGG | + | chr7_4:48514826-48514845 | Msa1159030:intron | 30.0% | |
| TAAGCTGTTTAATGCTTACA+GGG | + | chr7_4:48514827-48514846 | Msa1159030:intron | 30.0% | |
| CTCTTCCAAACATATAAACA+AGG | + | chr7_4:48515245-48515264 | Msa1159030:intron | 30.0% | |
| AAAACCTGAGTTTATGTGAT+GGG | + | chr7_4:48515803-48515822 | Msa1159030:intron | 30.0% | |
| GAATAGTGAAAAACTCCATA+AGG | - | chr7_4:48515863-48515882 | None:intergenic | 30.0% | |
| AAGATTTATGCCTATGTTGA+TGG | + | chr7_4:48515890-48515909 | Msa1159030:intron | 30.0% | |
| TGCTTACAATAGTCTTTACT+TGG | + | chr7_4:48516053-48516072 | Msa1159030:intron | 30.0% | |
| ! | ATACTTAACAGTCCTTTTGA+TGG | - | chr7_4:48516126-48516145 | None:intergenic | 30.0% |
| AAATCCACATCAATATATGG+GGG | - | chr7_4:48516170-48516189 | None:intergenic | 30.0% | |
| ! | TACAAACAGCTTCATCTTTT+GGG | - | chr7_4:48516265-48516284 | None:intergenic | 30.0% |
| ! | TTACAAACAGCTTCATCTTT+TGG | - | chr7_4:48516266-48516285 | None:intergenic | 30.0% |
| TTTGTAAAATTATGGGCCAA+AGG | + | chr7_4:48516279-48516298 | Msa1159030:CDS | 30.0% | |
| TTGTAAAATTATGGGCCAAA+GGG | + | chr7_4:48516280-48516299 | Msa1159030:CDS | 30.0% | |
| !! | AGTAGTTACTTGGTTTTCTT+TGG | - | chr7_4:48516320-48516339 | None:intergenic | 30.0% |
| ACTACTTATTGTATCTTTGG+TGG | + | chr7_4:48516334-48516353 | Msa1159030:exon | 30.0% | |
| CCAAGAATCAACTAATAAGA+TGG | - | chr7_4:48516410-48516429 | None:intergenic | 30.0% | |
| ! | CCATCTTATTAGTTGATTCT+TGG | + | chr7_4:48516407-48516426 | Msa1159030:three_prime_UTR | 30.0% |
| CAGTTATTGTGAACAAAACT+AGG | - | chr7_4:48516459-48516478 | None:intergenic | 30.0% | |
| ACATATCCGATAAACATACA+AGG | - | chr7_4:48516576-48516595 | None:intergenic | 30.0% | |
| !! | TATTTTTGCCGGAATCTTTG+CGG | - | chr7_4:48512106-48512125 | None:intergenic | 35.0% |
| ATTGGTGAAGAACTTGAAGA+TGG | - | chr7_4:48512289-48512308 | None:intergenic | 35.0% | |
| TGACAGATTCATTTGAAAGC+TGG | + | chr7_4:48512452-48512471 | Msa1159030:intron | 35.0% | |
| TCATCTCCTCTGAATACAAT+AGG | - | chr7_4:48512545-48512564 | None:intergenic | 35.0% | |
| !! | CCCCTAATTTGTGACATTTT+TGG | + | chr7_4:48512599-48512618 | Msa1159030:intron | 35.0% |
| ! | GAGTTAAATACTCCTGCTTT+TGG | + | chr7_4:48512793-48512812 | Msa1159030:intron | 35.0% |
| TATCCCTTTGGCAAACAAAT+AGG | + | chr7_4:48513116-48513135 | Msa1159030:intron | 35.0% | |
| CTAAAGCAACGATCATAAGA+AGG | - | chr7_4:48513172-48513191 | None:intergenic | 35.0% | |
| ! | CTTCTTATGATCGTTGCTTT+AGG | + | chr7_4:48513170-48513189 | Msa1159030:intron | 35.0% |
| TACTATTTGCCAAATGCCAA+TGG | + | chr7_4:48513276-48513295 | Msa1159030:intron | 35.0% | |
| CAAATGAATCCATTGGCATT+TGG | - | chr7_4:48513288-48513307 | None:intergenic | 35.0% | |
| !! | CCTAATTTGTTTGCCAAAAC+GGG | + | chr7_4:48513517-48513536 | Msa1159030:intron | 35.0% |
| !! | CTAATTTGTTTGCCAAAACG+GGG | + | chr7_4:48513518-48513537 | Msa1159030:intron | 35.0% |
| GGCTGCCCTTTAATATATAT+AGG | - | chr7_4:48513698-48513717 | None:intergenic | 35.0% | |
| ATATATATTAAAGGGCAGCC+CGG | + | chr7_4:48513698-48513717 | Msa1159030:intron | 35.0% | |
| CATACAATACACCAAATGGT+GGG | - | chr7_4:48513732-48513751 | None:intergenic | 35.0% | |
| GATTAAAAGTTTAGACCGTC+TGG | - | chr7_4:48513789-48513808 | None:intergenic | 35.0% | |
| ! | GGTCTAAACTTTTAATCGAG+CGG | + | chr7_4:48513792-48513811 | Msa1159030:intron | 35.0% |
| CATCTACATGATAACTTGAG+TGG | + | chr7_4:48513824-48513843 | Msa1159030:intron | 35.0% | |
| CAAAGGTTATACCCTTTCTT+TGG | + | chr7_4:48514123-48514142 | Msa1159030:intron | 35.0% | |
| AAAAATTTGTACGACAGGCA+TGG | - | chr7_4:48514162-48514181 | None:intergenic | 35.0% | |
| GATCTTAAAGATGAACGCAA+GGG | - | chr7_4:48514215-48514234 | None:intergenic | 35.0% | |
| AGATCTTAAAGATGAACGCA+AGG | - | chr7_4:48514216-48514235 | None:intergenic | 35.0% | |
| ACGGATCCTAAATCTTTAAG+AGG | + | chr7_4:48514269-48514288 | Msa1159030:intron | 35.0% | |
| AATTTCTGTGTGGTCAATTC+TGG | + | chr7_4:48514427-48514446 | Msa1159030:intron | 35.0% | |
| ATTTCTGTGTGGTCAATTCT+GGG | + | chr7_4:48514428-48514447 | Msa1159030:intron | 35.0% | |
| ATGAAGTTCTCTGTTCCATA+TGG | + | chr7_4:48514641-48514660 | Msa1159030:intron | 35.0% | |
| TGGATATCCATAACAAAGTG+TGG | + | chr7_4:48514665-48514684 | Msa1159030:intron | 35.0% | |
| ! | TTCAAGTTCTCTGTTCCATA+TGG | + | chr7_4:48514899-48514918 | Msa1159030:intron | 35.0% |
| TGTTCCATATGGCTATTCAT+AGG | + | chr7_4:48514910-48514929 | Msa1159030:intron | 35.0% | |
| CTTTCCTATGAATAGCCATA+TGG | - | chr7_4:48514917-48514936 | None:intergenic | 35.0% | |
| !! | TCTAAGACTTTGGAGTTGTT+TGG | + | chr7_4:48515036-48515055 | Msa1159030:intron | 35.0% |
| ACTGAAGTGTAAACAGTGTA+TGG | + | chr7_4:48515197-48515216 | Msa1159030:intron | 35.0% | |
| CTGAAGTGTAAACAGTGTAT+GGG | + | chr7_4:48515198-48515217 | Msa1159030:intron | 35.0% | |
| TGAAGTGTAAACAGTGTATG+GGG | + | chr7_4:48515199-48515218 | Msa1159030:intron | 35.0% | |
| ! | AGTAAGATTTGTATCGGTGA+AGG | + | chr7_4:48515307-48515326 | Msa1159030:intron | 35.0% |
| ! | GTAAGATTTGTATCGGTGAA+GGG | + | chr7_4:48515308-48515327 | Msa1159030:intron | 35.0% |
| !! | AGCAGCATTCTAAAATTCAG+AGG | - | chr7_4:48515670-48515689 | None:intergenic | 35.0% |
| ! | TTTAGAATGCTGCTCTGTAT+TGG | + | chr7_4:48515676-48515695 | Msa1159030:intron | 35.0% |
| TTAGAATGCTGCTCTGTATT+GGG | + | chr7_4:48515677-48515696 | Msa1159030:intron | 35.0% | |
| GTAACAATAACTAGCACAAC+AGG | - | chr7_4:48515759-48515778 | None:intergenic | 35.0% | |
| GAAAACCTGAGTTTATGTGA+TGG | + | chr7_4:48515802-48515821 | Msa1159030:intron | 35.0% | |
| AAACCTGAGTTTATGTGATG+GGG | + | chr7_4:48515804-48515823 | Msa1159030:intron | 35.0% | |
| CTTCCTTGAATACCATCAAA+AGG | + | chr7_4:48516111-48516130 | Msa1159030:CDS | 35.0% | |
| !! | AGTCCTTTTGATGGTATTCA+AGG | - | chr7_4:48516117-48516136 | None:intergenic | 35.0% |
| TATTCCCCCATATATTGATG+TGG | + | chr7_4:48516163-48516182 | Msa1159030:CDS | 35.0% | |
| TGATGTGGATTTAAGTGAGT+TGG | + | chr7_4:48516178-48516197 | Msa1159030:CDS | 35.0% | |
| ! | GATTTAAGTGAGTTGGATGT+GGG | + | chr7_4:48516185-48516204 | Msa1159030:CDS | 35.0% |
| TACCGACCTTGTATGTTTAT+CGG | + | chr7_4:48516567-48516586 | Msa1159030:three_prime_UTR | 35.0% | |
| ATCCGATAAACATACAAGGT+CGG | - | chr7_4:48516572-48516591 | None:intergenic | 35.0% | |
| !!! | GTTTTGGGTTTTGGGTTTTG+CGG | - | chr7_4:48511893-48511912 | None:intergenic | 40.0% |
| !!! | GAGAAAGGGTTTTGGGTTTT+GGG | - | chr7_4:48511901-48511920 | None:intergenic | 40.0% |
| !!! | AGAGAAAGGGTTTTGGGTTT+TGG | - | chr7_4:48511902-48511921 | None:intergenic | 40.0% |
| ! | TGGTGAAGAGAAAGGGTTTT+GGG | - | chr7_4:48511908-48511927 | None:intergenic | 40.0% |
| TGCATTGTGGTGAAGAGAAA+GGG | - | chr7_4:48511915-48511934 | None:intergenic | 40.0% | |
| ATGCATTGTGGTGAAGAGAA+AGG | - | chr7_4:48511916-48511935 | None:intergenic | 40.0% | |
| !! | TCGTACTTTGGGTTAGGTTT+TGG | - | chr7_4:48512062-48512081 | None:intergenic | 40.0% |
| ! | ATTTTTGCCGGAATCTTTGC+GGG | - | chr7_4:48512105-48512124 | None:intergenic | 40.0% |
| AACGAGTTTCCTGATCTGAT+CGG | - | chr7_4:48512228-48512247 | None:intergenic | 40.0% | |
| AGGAAACTCGTTAACCATCT+CGG | + | chr7_4:48512236-48512255 | Msa1159030:CDS | 40.0% | |
| GAAGAACTTGAAGATGGAAG+AGG | - | chr7_4:48512283-48512302 | None:intergenic | 40.0% | |
| CGATGATGTCTTCGTCATTA+GGG | - | chr7_4:48512328-48512347 | None:intergenic | 40.0% | |
| TCGATGATGTCTTCGTCATT+AGG | - | chr7_4:48512329-48512348 | None:intergenic | 40.0% | |
| ACTTTCAACCAAGCATCTGA+CGG | - | chr7_4:48512515-48512534 | None:intergenic | 40.0% | |
| GACGTTCCTATTGTATTCAG+AGG | + | chr7_4:48512536-48512555 | Msa1159030:CDS | 40.0% | |
| AGAGGAGATGATATATCTCC+TGG | + | chr7_4:48512554-48512573 | Msa1159030:CDS | 40.0% | |
| ATATCTCCTGGACTCAAGAA+AGG | + | chr7_4:48512566-48512585 | Msa1159030:CDS | 40.0% | |
| ATCTAACCTTTCTTGAGTCC+AGG | - | chr7_4:48512575-48512594 | None:intergenic | 40.0% | |
| TTGTCACAATAGTGAACGGA+AGG | - | chr7_4:48512824-48512843 | None:intergenic | 40.0% | |
| AGCAGTTAATCATAGCAGCT+TGG | + | chr7_4:48512849-48512868 | Msa1159030:intron | 40.0% | |
| GCAGTTAATCATAGCAGCTT+GGG | + | chr7_4:48512850-48512869 | Msa1159030:intron | 40.0% | |
| ! | TAAAGTCCAGCTTTCAAGTC+TGG | + | chr7_4:48512925-48512944 | Msa1159030:intron | 40.0% |
| CCTCCTATTTGTTTGCCAAA+GGG | - | chr7_4:48513122-48513141 | None:intergenic | 40.0% | |
| CCTTTGGCAAACAAATAGGA+GGG | + | chr7_4:48513120-48513139 | Msa1159030:intron | 40.0% | |
| ! | GATGTATCATTTTGCGATGG+TGG | + | chr7_4:48513352-48513371 | Msa1159030:intron | 40.0% |
| CAAGTTCTATTGCACATCGT+TGG | - | chr7_4:48513475-48513494 | None:intergenic | 40.0% | |
| CAACGATGTGCAATAGAACT+TGG | + | chr7_4:48513473-48513492 | Msa1159030:intron | 40.0% | |
| !! | CCCGTTTTGGCAAACAAATT+AGG | - | chr7_4:48513520-48513539 | None:intergenic | 40.0% |
| ATATATATAGGGAGCGACTC+AGG | - | chr7_4:48513686-48513705 | None:intergenic | 40.0% | |
| TATATATTAAAGGGCAGCCC+GGG | + | chr7_4:48513699-48513718 | Msa1159030:intron | 40.0% | |
| GCATACAATACACCAAATGG+TGG | - | chr7_4:48513733-48513752 | None:intergenic | 40.0% | |
| AAGTTTAGACCGTCTGGATT+TGG | - | chr7_4:48513783-48513802 | None:intergenic | 40.0% | |
| !! | TTGGTAGTGATTACGTTTCC+AGG | + | chr7_4:48513888-48513907 | Msa1159030:intron | 40.0% |
| ! | AAAGGGTATAACCTTTGTCC+AGG | - | chr7_4:48514120-48514139 | None:intergenic | 40.0% |
| ! | GGGAGTGTAGAAATTGAGAT+CGG | + | chr7_4:48514448-48514467 | Msa1159030:intron | 40.0% |
| AGAAATTGAGATCGGTGAAG+AGG | + | chr7_4:48514456-48514475 | Msa1159030:intron | 40.0% | |
| !! | TGGATGAGATTTGGTGTCAA+TGG | + | chr7_4:48514560-48514579 | Msa1159030:intron | 40.0% |
| GTTATGGATATCCAGCCATA+TGG | - | chr7_4:48514659-48514678 | None:intergenic | 40.0% | |
| CACTGTACCACACTTTGTTA+TGG | - | chr7_4:48514675-48514694 | None:intergenic | 40.0% | |
| !! | TGCTTACAGGGTTTTATGCT+AGG | + | chr7_4:48514839-48514858 | Msa1159030:intron | 40.0% |
| !! | TTACAGGGTTTTATGCTAGG+TGG | + | chr7_4:48514842-48514861 | Msa1159030:intron | 40.0% |
| TAAAACGCAAAAGGACCGTT+CGG | - | chr7_4:48515416-48515435 | None:intergenic | 40.0% | |
| TTTGATGCCTTGTAACCTAG+CGG | - | chr7_4:48515569-48515588 | None:intergenic | 40.0% | |
| ! | AGTTTATGTGATGGGGTAGA+CGG | + | chr7_4:48515811-48515830 | Msa1159030:intron | 40.0% |
| TCACTTTGCACCATCAACAT+AGG | - | chr7_4:48515903-48515922 | None:intergenic | 40.0% | |
| ! | CTCATCACCACAATTTTTGC+AGG | + | chr7_4:48516086-48516105 | Msa1159030:intron | 40.0% |
| ! | GGATTTAAGTGAGTTGGATG+TGG | + | chr7_4:48516184-48516203 | Msa1159030:CDS | 40.0% |
| !! | GGGTGAAGAAGTTTTAATGC+AGG | - | chr7_4:48516245-48516264 | None:intergenic | 40.0% |
| GTTGTGTTTCAGAAACCCTT+TGG | - | chr7_4:48516298-48516317 | None:intergenic | 40.0% | |
| ! | TGTAGAGCTTTGTGTAACTC+AGG | - | chr7_4:48516524-48516543 | None:intergenic | 40.0% |
| TGAGGAAAGTTGAGAGGAGA+GGG | - | chr7_4:48511867-48511886 | None:intergenic | 45.0% | |
| !!! | TTTTGGGTTTTGCGGTAGTG+AGG | - | chr7_4:48511885-48511904 | None:intergenic | 45.0% |
| ! | GTGGTGAAGAGAAAGGGTTT+TGG | - | chr7_4:48511909-48511928 | None:intergenic | 45.0% |
| AGGTTAGGGGTTGTAGTATG+TGG | - | chr7_4:48512025-48512044 | None:intergenic | 45.0% | |
| ! | GTTTCGTCGTACTTTGGGTT+AGG | - | chr7_4:48512068-48512087 | None:intergenic | 45.0% |
| GGATGGTTTCGTCGTACTTT+GGG | - | chr7_4:48512073-48512092 | None:intergenic | 45.0% | |
| AGGATGGTTTCGTCGTACTT+TGG | - | chr7_4:48512074-48512093 | None:intergenic | 45.0% | |
| ! | TTTTTGCCGGAATCTTTGCG+GGG | - | chr7_4:48512104-48512123 | None:intergenic | 45.0% |
| !! | CTTGGCGGAGATATTTTTGC+CGG | - | chr7_4:48512117-48512136 | None:intergenic | 45.0% |
| ATCGTCTTCGAACAGGAAGA+CGG | + | chr7_4:48512164-48512183 | Msa1159030:CDS | 45.0% | |
| ACTCAAATGCATACACTGCG+AGG | - | chr7_4:48512368-48512387 | None:intergenic | 45.0% | |
| GTTAATCATAGCAGCTTGGG+CGG | + | chr7_4:48512853-48512872 | Msa1159030:intron | 45.0% | |
| CCCTTTGGCAAACAAATAGG+AGG | + | chr7_4:48513119-48513138 | Msa1159030:intron | 45.0% | |
| CCCTCCTATTTGTTTGCCAA+AGG | - | chr7_4:48513123-48513142 | None:intergenic | 45.0% | |
| GTTCTATTGCACATCGTTGG+TGG | - | chr7_4:48513472-48513491 | None:intergenic | 45.0% | |
| TACAACACGTGAGTACAGAG+GGG | - | chr7_4:48513852-48513871 | None:intergenic | 45.0% | |
| CTACAACACGTGAGTACAGA+GGG | - | chr7_4:48513853-48513872 | None:intergenic | 45.0% | |
| ! | ATTTCATCGGCTGCAGAAGA+GGG | - | chr7_4:48513921-48513940 | None:intergenic | 45.0% |
| ! | AATTTCATCGGCTGCAGAAG+AGG | - | chr7_4:48513922-48513941 | None:intergenic | 45.0% |
| AGAGGAATGTTCCTGGACAA+AGG | + | chr7_4:48514106-48514125 | Msa1159030:intron | 45.0% | |
| !! | AGATCGGTGAAGAGGTACTA+AGG | + | chr7_4:48514464-48514483 | Msa1159030:intron | 45.0% |
| AGTTCTCTGTTCCATATGGC+TGG | + | chr7_4:48514645-48514664 | Msa1159030:intron | 45.0% | |
| ATGCTAGGTGGTATGTGCAA+TGG | + | chr7_4:48514607-48514626 | Msa1159030:intron | 45.0% | |
| TGCTAGGTGGTATGTGCAAT+GGG | + | chr7_4:48514855-48514874 | Msa1159030:intron | 45.0% | |
| TGGCTATTCATAGGAAAGCG+TGG | + | chr7_4:48514919-48514938 | Msa1159030:intron | 45.0% | |
| CCTCAATAAGCTCTTCCGAA+CGG | + | chr7_4:48515398-48515417 | Msa1159030:intron | 45.0% | |
| AATACTCCAGTCACCACTGT+GGG | + | chr7_4:48515472-48515491 | Msa1159030:intron | 45.0% | |
| ATAACCTTACCATGAGCGTC+AGG | + | chr7_4:48515517-48515536 | Msa1159030:intron | 45.0% | |
| TAGAAACAACCTGACGCTCA+TGG | - | chr7_4:48515529-48515548 | None:intergenic | 45.0% | |
| TGCTCTGTATTGGGATGACA+AGG | + | chr7_4:48515686-48515705 | Msa1159030:intron | 45.0% | |
| CTACCCCATCACATAAACTC+AGG | - | chr7_4:48515810-48515829 | None:intergenic | 45.0% | |
| !! | TGTTGATGGTGCAAAGTGAC+TGG | + | chr7_4:48515904-48515923 | Msa1159030:intron | 45.0% |
| GTCCATATCAGTTAGAGCAG+GGG | - | chr7_4:48515963-48515982 | None:intergenic | 45.0% | |
| CGTCCATATCAGTTAGAGCA+GGG | - | chr7_4:48515964-48515983 | None:intergenic | 45.0% | |
| TCTAACTGATATGGACGCCT+TGG | + | chr7_4:48515967-48515986 | Msa1159030:intron | 45.0% | |
| !! | GGAAGCACCTGCAAAAATTG+TGG | - | chr7_4:48516096-48516115 | None:intergenic | 45.0% |
| ATGGGGGAATAATGTCTGCA+GGG | - | chr7_4:48516154-48516173 | None:intergenic | 45.0% | |
| TATGGGGGAATAATGTCTGC+AGG | - | chr7_4:48516155-48516174 | None:intergenic | 45.0% | |
| GTGAGGAAAGTTGAGAGGAG+AGG | - | chr7_4:48511868-48511887 | None:intergenic | 50.0% | |
| CGGTAGTGAGGAAAGTTGAG+AGG | - | chr7_4:48511873-48511892 | None:intergenic | 50.0% | |
| ! | GATTAAGGCGTTTGCGATGG+CGG | - | chr7_4:48511985-48512004 | None:intergenic | 50.0% |
| ! | GTGGATTAAGGCGTTTGCGA+TGG | - | chr7_4:48511988-48512007 | None:intergenic | 50.0% |
| !! | TGGCTCTGGAGTGTGGATTA+AGG | - | chr7_4:48512000-48512019 | None:intergenic | 50.0% |
| ! | TGTAGTATGTGGTCTGGCTC+TGG | - | chr7_4:48512014-48512033 | None:intergenic | 50.0% |
| AGGGGTTGTAGTATGTGGTC+TGG | - | chr7_4:48512020-48512039 | None:intergenic | 50.0% | |
| AAAGCCGTCGAGGTAGGTTA+GGG | - | chr7_4:48512039-48512058 | None:intergenic | 50.0% | |
| !! | TTTTGGAAAGCCGTCGAGGT+AGG | - | chr7_4:48512045-48512064 | None:intergenic | 50.0% |
| !!! | TAGGTTTTGGAAAGCCGTCG+AGG | - | chr7_4:48512049-48512068 | None:intergenic | 50.0% |
| CGGCAAAAATATCTCCGCCA+AGG | + | chr7_4:48512115-48512134 | Msa1159030:CDS | 50.0% | |
| TCCTGTTCGAAGACGATGCT+CGG | - | chr7_4:48512161-48512180 | None:intergenic | 50.0% | |
| GATCGGAACGAACGGAAATG+AGG | - | chr7_4:48512211-48512230 | None:intergenic | 50.0% | |
| CCTGATCTGATCGGAACGAA+CGG | - | chr7_4:48512219-48512238 | None:intergenic | 50.0% | |
| CGGAAGGAAAGACCAAAAGC+AGG | - | chr7_4:48512808-48512827 | None:intergenic | 50.0% | |
| ! | TCCAGCTTTCAAGTCTGGCA+GGG | + | chr7_4:48512930-48512949 | Msa1159030:intron | 50.0% |
| !! | CCGTCTGGATTTGGTGTCAA+CGG | - | chr7_4:48513774-48513793 | None:intergenic | 50.0% |
| CCGTTGACACCAAATCCAGA+CGG | + | chr7_4:48513771-48513790 | Msa1159030:intron | 50.0% | |
| ACAACACGTGAGTACAGAGG+GGG | - | chr7_4:48513851-48513870 | None:intergenic | 50.0% | |
| CCTACAACACGTGAGTACAG+AGG | - | chr7_4:48513854-48513873 | None:intergenic | 50.0% | |
| CCTCTGTACTCACGTGTTGT+AGG | + | chr7_4:48513851-48513870 | Msa1159030:intron | 50.0% | |
| !! | GGACAAAGGCATTTACGTCG+TGG | + | chr7_4:48514077-48514096 | Msa1159030:intron | 50.0% |
| TTTACGTCGTGGTTGTGCAG+AGG | + | chr7_4:48514088-48514107 | Msa1159030:intron | 50.0% | |
| GTTGTGCAGAGGAATGTTCC+TGG | + | chr7_4:48514099-48514118 | Msa1159030:intron | 50.0% | |
| TGCTAGGTGGTATGTGCAAC+AGG | + | chr7_4:48514608-48514627 | Msa1159030:intron | 50.0% | |
| CCGTTCGGAAGAGCTTATTG+AGG | - | chr7_4:48515401-48515420 | None:intergenic | 50.0% | |
| GAATACTCCAGTCACCACTG+TGG | + | chr7_4:48515471-48515490 | Msa1159030:intron | 50.0% | |
| ATACTCCAGTCACCACTGTG+GGG | + | chr7_4:48515473-48515492 | Msa1159030:intron | 50.0% | |
| ACTCTCACTAAACCCCACAG+TGG | - | chr7_4:48515488-48515507 | None:intergenic | 50.0% | |
| ACAACCTGACGCTCATGGTA+AGG | - | chr7_4:48515524-48515543 | None:intergenic | 50.0% | |
| GACCCCTGCTCTAACTGATA+TGG | + | chr7_4:48515958-48515977 | Msa1159030:intron | 50.0% | |
| GCGTCCATATCAGTTAGAGC+AGG | - | chr7_4:48515965-48515984 | None:intergenic | 50.0% | |
| CTGATATGGACGCCTTGGTA+TGG | + | chr7_4:48515972-48515991 | Msa1159030:intron | 50.0% | |
| CAACCCCTAACCTACCTCGA+CGG | + | chr7_4:48512032-48512051 | Msa1159030:CDS | 55.0% | |
| AAGCCGTCGAGGTAGGTTAG+GGG | - | chr7_4:48512038-48512057 | None:intergenic | 55.0% | |
| GAAAGCCGTCGAGGTAGGTT+AGG | - | chr7_4:48512040-48512059 | None:intergenic | 55.0% | |
| AATCTTTGCGGGGAATGGCG+AGG | - | chr7_4:48512094-48512113 | None:intergenic | 55.0% | |
| GCCATTCCCCGCAAAGATTC+CGG | + | chr7_4:48512095-48512114 | Msa1159030:CDS | 55.0% | |
| ! | TCCGCCAAGGAGCGTAAAGT+TGG | + | chr7_4:48512128-48512147 | Msa1159030:CDS | 55.0% |
| GCCAACTTTACGCTCCTTGG+CGG | - | chr7_4:48512132-48512151 | None:intergenic | 55.0% | |
| ! | TCCGAGCATCGTCTTCGAAC+AGG | + | chr7_4:48512157-48512176 | Msa1159030:CDS | 55.0% |
| GAACAGGAAGACGGTCAGCA+CGG | + | chr7_4:48512173-48512192 | Msa1159030:CDS | 55.0% | |
| CCGTTCGTTCCGATCAGATC+AGG | + | chr7_4:48512216-48512235 | Msa1159030:CDS | 55.0% | |
| GGCGTGAGAGGAAGAAGGAA+CGG | - | chr7_4:48512262-48512281 | None:intergenic | 55.0% | |
| ! | GAAGAGGCGTGAGAGGAAGA+AGG | - | chr7_4:48512267-48512286 | None:intergenic | 55.0% |
| ! | GAAGATGGAAGAGGCGTGAG+AGG | - | chr7_4:48512274-48512293 | None:intergenic | 55.0% |
| TAAGGGCTCCGTCAGATGCT+TGG | + | chr7_4:48512504-48512523 | Msa1159030:CDS | 55.0% | |
| ATCATAGCAGCTTGGGCGGT+TGG | + | chr7_4:48512857-48512876 | Msa1159030:intron | 55.0% | |
| GGGCGGTTGGATAGCTCAAT+TGG | + | chr7_4:48512870-48512889 | Msa1159030:intron | 55.0% | |
| ! | GTCCAGCTTTCAAGTCTGGC+AGG | + | chr7_4:48512929-48512948 | Msa1159030:intron | 55.0% |
| TCCCTGCCAGACTTGAAAGC+TGG | - | chr7_4:48512934-48512953 | None:intergenic | 55.0% | |
| TATTAAAGGGCAGCCCGGGA+AGG | + | chr7_4:48513703-48513722 | Msa1159030:intron | 55.0% | |
| ATTAAAGGGCAGCCCGGGAA+GGG | + | chr7_4:48513704-48513723 | Msa1159030:intron | 55.0% | |
| GCAGAAGAGGGAGGTAAACC+TGG | - | chr7_4:48513909-48513928 | None:intergenic | 55.0% | |
| CTAAACCCCACAGTGGTGAC+TGG | - | chr7_4:48515481-48515500 | None:intergenic | 55.0% | |
| GCTGAAAAGCCATGACCGCT+AGG | + | chr7_4:48515551-48515570 | Msa1159030:intron | 55.0% | |
| GCCATGACCGCTAGGTTACA+AGG | + | chr7_4:48515559-48515578 | Msa1159030:intron | 55.0% | |
| GCCTTGTAACCTAGCGGTCA+TGG | - | chr7_4:48515563-48515582 | None:intergenic | 55.0% | |
| ! | TGAGTTGGATGTGGGCCAGA+AGG | + | chr7_4:48516193-48516212 | Msa1159030:CDS | 55.0% |
| GATCACCCATGAGCACCTTC+TGG | - | chr7_4:48516211-48516230 | None:intergenic | 55.0% | |
| TGTGCGGGGGAGATGCATTG+TGG | - | chr7_4:48511928-48511947 | None:intergenic | 60.0% | |
| !! | TTGCGATGGCGGAGAAGTGG+CGG | - | chr7_4:48511974-48511993 | None:intergenic | 60.0% |
| !! | CGTTTGCGATGGCGGAGAAG+TGG | - | chr7_4:48511977-48511996 | None:intergenic | 60.0% |
| !! | TGTGGTCTGGCTCTGGAGTG+TGG | - | chr7_4:48512007-48512026 | None:intergenic | 60.0% |
| TTTGCGGGGAATGGCGAGGA+TGG | - | chr7_4:48512090-48512109 | None:intergenic | 60.0% | |
| GCCGGAATCTTTGCGGGGAA+TGG | - | chr7_4:48512099-48512118 | None:intergenic | 60.0% | |
| GCGGCCAACTTTACGCTCCT+TGG | - | chr7_4:48512135-48512154 | None:intergenic | 60.0% | |
| CGAAGACGATGCTCGGAACG+CGG | - | chr7_4:48512154-48512173 | None:intergenic | 60.0% | |
| GGAAGAAGGAACGGCCGAGA+TGG | - | chr7_4:48512253-48512272 | None:intergenic | 60.0% | |
| TTAAAGGGCAGCCCGGGAAG+GGG | + | chr7_4:48513705-48513724 | Msa1159030:intron | 60.0% | |
| ! | AAATGGTGGGACCCCTTCCC+GGG | - | chr7_4:48513719-48513738 | None:intergenic | 60.0% |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr7_4:48513720-48513739 | None:intergenic | 60.0% |
| ! | TCATCGGCTGCAGAAGAGGG+AGG | - | chr7_4:48513918-48513937 | None:intergenic | 60.0% |
| !! | TGTGGGCCAGAAGGTGCTCA+TGG | + | chr7_4:48516202-48516221 | Msa1159030:CDS | 60.0% |
| !! | GTGGGCCAGAAGGTGCTCAT+GGG | + | chr7_4:48516203-48516222 | Msa1159030:CDS | 60.0% |
| AAGTGGCGGCGGTGGAGGAA+GGG | - | chr7_4:48511960-48511979 | None:intergenic | 65.0% | |
| CAGGAAGACGGTCAGCACGG+TGG | + | chr7_4:48512176-48512195 | Msa1159030:CDS | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr7_4:48513718-48513737 | Msa1159030:intron | 65.0% | |
| ! | AAGGGGCGGAGGAGTGTGCG+GGG | - | chr7_4:48511942-48511961 | None:intergenic | 70.0% |
| ! | GAAGGGGCGGAGGAGTGTGC+GGG | - | chr7_4:48511943-48511962 | None:intergenic | 70.0% |
| ! | GGAAGGGGCGGAGGAGTGTG+CGG | - | chr7_4:48511944-48511963 | None:intergenic | 70.0% |
| AGTGGCGGCGGTGGAGGAAG+GGG | - | chr7_4:48511959-48511978 | None:intergenic | 70.0% | |
| GAAGTGGCGGCGGTGGAGGA+AGG | - | chr7_4:48511961-48511980 | None:intergenic | 70.0% | |
| !! | CGATGGCGGAGAAGTGGCGG+CGG | - | chr7_4:48511971-48511990 | None:intergenic | 70.0% |
| ! | AGGGGCGGAGGAGTGTGCGG+GGG | - | chr7_4:48511941-48511960 | None:intergenic | 75.0% |
| CGGAGAAGTGGCGGCGGTGG+AGG | - | chr7_4:48511965-48511984 | None:intergenic | 75.0% | |
| TGGCGGAGAAGTGGCGGCGG+TGG | - | chr7_4:48511968-48511987 | None:intergenic | 75.0% | |
| ! | GGCGGTGGAGGAAGGGGCGG+AGG | - | chr7_4:48511953-48511972 | None:intergenic | 80.0% |
| ! | GGCGGCGGTGGAGGAAGGGG+CGG | - | chr7_4:48511956-48511975 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 48511834 | 48516699 | 48511834 | ID=Msa1159030;Name=Msa1159030 |
| chr7_4 | mRNA | 48511834 | 48516699 | 48511834 | ID=Msa1159030-mRNA-1;Parent=Msa1159030;Name=Msa1159030-mRNA-1;_AED=0.05;_eAED=0.05;_QI=96|1|1|1|1|1|3|365|266 |
| chr7_4 | exon | 48511834 | 48512373 | 48511834 | ID=Msa1159030-mRNA-1:exon:13122;Parent=Msa1159030-mRNA-1 |
| chr7_4 | exon | 48512458 | 48512587 | 48512458 | ID=Msa1159030-mRNA-1:exon:13123;Parent=Msa1159030-mRNA-1 |
| chr7_4 | exon | 48516108 | 48516699 | 48516108 | ID=Msa1159030-mRNA-1:exon:13124;Parent=Msa1159030-mRNA-1 |
| chr7_4 | five_prime_UTR | 48511834 | 48511929 | 48511834 | ID=Msa1159030-mRNA-1:five_prime_utr;Parent=Msa1159030-mRNA-1 |
| chr7_4 | CDS | 48511930 | 48512373 | 48511930 | ID=Msa1159030-mRNA-1:cds;Parent=Msa1159030-mRNA-1 |
| chr7_4 | CDS | 48512458 | 48512587 | 48512458 | ID=Msa1159030-mRNA-1:cds;Parent=Msa1159030-mRNA-1 |
| chr7_4 | CDS | 48516108 | 48516334 | 48516108 | ID=Msa1159030-mRNA-1:cds;Parent=Msa1159030-mRNA-1 |
| chr7_4 | three_prime_UTR | 48516335 | 48516699 | 48516335 | ID=Msa1159030-mRNA-1:three_prime_utr;Parent=Msa1159030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
