Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340560 | XP_003624695.1 | 98.872 | 266 | 3 | 0 | 1 | 266 | 1 | 266 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340560 | sp|Q2G6G9|RL25_NOVAD | 29.480 | 173 | 100 | 3 | 56 | 228 | 9 | 159 | 3.61e-19 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340560 | Q2HVB5 | 98.872 | 266 | 3 | 0 | 1 | 266 | 1 | 266 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088610 | Msa1340560 | 0.819617 | 1.057281e-52 | -8.615850e-47 |
| Msa0621210 | Msa1340560 | 0.824992 | 5.975177e-54 | -8.615850e-47 |
| Msa1279780 | Msa1340560 | 0.837077 | 6.430195e-57 | -8.615850e-47 |
| Msa1321190 | Msa1340560 | 0.830527 | 2.792391e-55 | -8.615850e-47 |
| Msa1321200 | Msa1340560 | 0.869791 | 2.376407e-66 | -8.615850e-47 |
| Msa1340560 | Msa1428870 | 0.817787 | 2.751408e-52 | -8.615850e-47 |
| Msa1036880 | Msa1340560 | 0.803809 | 2.919331e-49 | -8.615850e-47 |
| Msa1071040 | Msa1340560 | 0.975752 | 1.564412e-140 | -8.615850e-47 |
| Msa0291960 | Msa1340560 | 0.876713 | 1.121826e-68 | -8.615850e-47 |
| Msa0329930 | Msa1340560 | 0.891175 | 5.046833e-74 | -8.615850e-47 |
| Msa0333220 | Msa1340560 | 0.852552 | 4.284664e-61 | -8.615850e-47 |
| Msa1118440 | Msa1340560 | 0.970443 | 1.263755e-131 | -8.615850e-47 |
| Msa1159030 | Msa1340560 | 0.965634 | 7.346457e-125 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340560 | MtrunA17_Chr7g0253991 | 98.872 | 266 | 3 | 0 | 1 | 266 | 1 | 266 | 0.0 | 532 |
| Msa1340560 | MtrunA17_Chr8g0374611 | 37.981 | 208 | 116 | 3 | 53 | 253 | 32 | 233 | 7.56e-43 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340560 | AT4G23620.1 | 66.794 | 262 | 77 | 3 | 5 | 265 | 7 | 259 | 2.72e-121 | 347 |
| Msa1340560 | AT4G23620.2 | 63.636 | 275 | 77 | 4 | 5 | 265 | 7 | 272 | 1.09e-117 | 338 |
| Msa1340560 | AT5G66860.1 | 40.476 | 210 | 112 | 4 | 52 | 254 | 34 | 237 | 1.68e-44 | 151 |
Find 104 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGCTGTTTGTAAAATTA+TGG | 0.157665 | tig0004180:+38239 | Msa1340560:CDS |
| CTTTGAATGTGACATTTATA+AGG | 0.212828 | tig0004180:+34469 | Msa1340560:CDS |
| CTTAAATCCACATCAATATA+TGG | 0.221639 | tig0004180:-38138 | None:intergenic |
| TTACAAACAGCTTCATCTTT+TGG | 0.245961 | tig0004180:-38231 | None:intergenic |
| GTAACTACTTATTGTATCTT+TGG | 0.251706 | tig0004180:+38299 | Msa1340560:exon |
| TCGATGATGTCTTCGTCATT+AGG | 0.273733 | tig0004180:-34309 | None:intergenic |
| CCATCTTATTAGTTGATTCT+TGG | 0.275557 | tig0004180:+38375 | Msa1340560:three_prime_UTR |
| TCGTACTTTGGGTTAGGTTT+TGG | 0.283728 | tig0004180:-34042 | None:intergenic |
| CGATGATGTCTTCGTCATTA+GGG | 0.292294 | tig0004180:-34308 | None:intergenic |
| TACCGACCTTGTATGTTTAT+CGG | 0.318046 | tig0004180:+38535 | Msa1340560:three_prime_UTR |
| GGATGGTTTCGTCGTACTTT+GGG | 0.321382 | tig0004180:-34053 | None:intergenic |
| GCCATTCCCCGCAAAGATTC+CGG | 0.324964 | tig0004180:+34078 | Msa1340560:CDS |
| GGTTTGAATCTGAATCAAAT+TGG | 0.344633 | tig0004180:-34287 | None:intergenic |
| TCATCTCCTCTGAATACAAT+AGG | 0.354421 | tig0004180:-34525 | None:intergenic |
| AGTGGCGGCGGTGGAGGAAG+GGG | 0.363667 | tig0004180:-33939 | None:intergenic |
| GAAAGCCGTCGAGGTAGGTT+AGG | 0.367957 | tig0004180:-34020 | None:intergenic |
| TTTGAATGTGACATTTATAA+GGG | 0.368199 | tig0004180:+34470 | Msa1340560:CDS |
| ACTTGCTCAATATAAATGTT+TGG | 0.372718 | tig0004180:-38614 | None:intergenic |
| TGGCTCTGGAGTGTGGATTA+AGG | 0.373199 | tig0004180:-33980 | None:intergenic |
| GGAAGGGGCGGAGGAGTGTG+CGG | 0.375525 | tig0004180:-33924 | None:intergenic |
| GGCGGTGGAGGAAGGGGCGG+AGG | 0.376055 | tig0004180:-33933 | None:intergenic |
| TGGCGGAGAAGTGGCGGCGG+TGG | 0.378382 | tig0004180:-33948 | None:intergenic |
| CCGTTCGTTCCGATCAGATC+AGG | 0.382550 | tig0004180:+34199 | Msa1340560:CDS |
| CGGAGAAGTGGCGGCGGTGG+AGG | 0.383273 | tig0004180:-33945 | None:intergenic |
| GAAGCTGTTTGTAAAATTAT+GGG | 0.386857 | tig0004180:+38240 | Msa1340560:CDS |
| GTTTCGTCGTACTTTGGGTT+AGG | 0.390733 | tig0004180:-34048 | None:intergenic |
| TGTAGTATGTGGTCTGGCTC+TGG | 0.392426 | tig0004180:-33994 | None:intergenic |
| GATCACCCATGAGCACCTTC+TGG | 0.393208 | tig0004180:-38176 | None:intergenic |
| GCCGGAATCTTTGCGGGGAA+TGG | 0.394527 | tig0004180:-34079 | None:intergenic |
| AGGATGGTTTCGTCGTACTT+TGG | 0.396008 | tig0004180:-34054 | None:intergenic |
| GCGGCCAACTTTACGCTCCT+TGG | 0.414214 | tig0004180:-34115 | None:intergenic |
| GTTGTGTTTCAGAAACCCTT+TGG | 0.419943 | tig0004180:-38263 | None:intergenic |
| GTGGTGAAGAGAAAGGGTTT+TGG | 0.428880 | tig0004180:-33889 | None:intergenic |
| TTAAATCCACATCAATATAT+GGG | 0.431795 | tig0004180:-38137 | None:intergenic |
| GAAGTGGCGGCGGTGGAGGA+AGG | 0.435729 | tig0004180:-33941 | None:intergenic |
| GAAGGGGCGGAGGAGTGTGC+GGG | 0.438831 | tig0004180:-33923 | None:intergenic |
| AGAGGAGATGATATATCTCC+TGG | 0.439796 | tig0004180:+34537 | Msa1340560:CDS |
| AAGGGGCGGAGGAGTGTGCG+GGG | 0.441342 | tig0004180:-33922 | None:intergenic |
| TCCGAGCATCGTCTTCGAAC+AGG | 0.442178 | tig0004180:+34140 | Msa1340560:CDS |
| TGACAGATTCATTTGAAAGC+TGG | 0.443599 | tig0004180:+34435 | Msa1340560:intron |
| AAAGCCGTCGAGGTAGGTTA+GGG | 0.451004 | tig0004180:-34019 | None:intergenic |
| AGGGGTTGTAGTATGTGGTC+TGG | 0.453043 | tig0004180:-34000 | None:intergenic |
| AGATACAATAAGTAGTTACT+TGG | 0.457131 | tig0004180:-38295 | None:intergenic |
| TGTGGGCCAGAAGGTGCTCA+TGG | 0.458165 | tig0004180:+38170 | Msa1340560:CDS |
| ATCTAACCTTTCTTGAGTCC+AGG | 0.460897 | tig0004180:-34555 | None:intergenic |
| CATCTCCTCTGAATACAATA+GGG | 0.464738 | tig0004180:-34524 | None:intergenic |
| GGCGGCGGTGGAGGAAGGGG+CGG | 0.466194 | tig0004180:-33936 | None:intergenic |
| TGATGTGGATTTAAGTGAGT+TGG | 0.469740 | tig0004180:+38146 | Msa1340560:CDS |
| TGCATTGTGGTGAAGAGAAA+GGG | 0.471889 | tig0004180:-33895 | None:intergenic |
| TGAGGATAGTTGAGAGGAGA+GGG | 0.475606 | tig0004180:-33847 | None:intergenic |
| TAAGGGCTCCGTCAGATGCT+TGG | 0.483656 | tig0004180:+34487 | Msa1340560:CDS |
| TGTAGAGCTTTGTGTAACTC+AGG | 0.486448 | tig0004180:-38489 | None:intergenic |
| AGGGGCGGAGGAGTGTGCGG+GGG | 0.489766 | tig0004180:-33921 | None:intergenic |
| CAGTTATTGTGAACAAAACT+AGG | 0.490000 | tig0004180:-38424 | None:intergenic |
| TCCTGTTCGAAGACGATGCT+CGG | 0.491020 | tig0004180:-34141 | None:intergenic |
| CTTATAAATGTCACATTCAA+AGG | 0.498069 | tig0004180:-34468 | None:intergenic |
| CCAAGAATCAACTAATAAGA+TGG | 0.498429 | tig0004180:-38375 | None:intergenic |
| ACTACTTATTGTATCTTTGG+TGG | 0.503503 | tig0004180:+38302 | Msa1340560:exon |
| TTGTAAAATTATGGGCCAAA+GGG | 0.504390 | tig0004180:+38248 | Msa1340560:CDS |
| CGGTAGTGAGGATAGTTGAG+AGG | 0.505122 | tig0004180:-33853 | None:intergenic |
| GGATTTAAGTGAGTTGGATG+TGG | 0.507332 | tig0004180:+38152 | Msa1340560:CDS |
| GCCAACTTTACGCTCCTTGG+CGG | 0.509358 | tig0004180:-34112 | None:intergenic |
| ATGCATTGTGGTGAAGAGAA+AGG | 0.514185 | tig0004180:-33896 | None:intergenic |
| AAGTGGCGGCGGTGGAGGAA+GGG | 0.515170 | tig0004180:-33940 | None:intergenic |
| ATATCTCCTGGACTCAAGAA+AGG | 0.519847 | tig0004180:+34549 | Msa1340560:CDS |
| TTTGTAAAATTATGGGCCAA+AGG | 0.522313 | tig0004180:+38247 | Msa1340560:CDS |
| TCCGCCAAGGAGCGTAAAGT+TGG | 0.526882 | tig0004180:+34111 | Msa1340560:CDS |
| TGTGGTCTGGCTCTGGAGTG+TGG | 0.529733 | tig0004180:-33987 | None:intergenic |
| CTTCCTTGAATACCATCAAA+AGG | 0.531879 | tig0004180:+38079 | Msa1340560:CDS |
| ATTGGTGAAGAACTTGAAGA+TGG | 0.535306 | tig0004180:-34269 | None:intergenic |
| AGGTTAGGGGTTGTAGTATG+TGG | 0.536070 | tig0004180:-34005 | None:intergenic |
| GAAGATGGAAGAGGCGTGAG+AGG | 0.537822 | tig0004180:-34254 | None:intergenic |
| GATCGGAACGAACGGAAATG+AGG | 0.538932 | tig0004180:-34191 | None:intergenic |
| GTGAGGATAGTTGAGAGGAG+AGG | 0.539122 | tig0004180:-33848 | None:intergenic |
| TTTGCGGGGAATGGCGAGGA+TGG | 0.546947 | tig0004180:-34070 | None:intergenic |
| CGTTTGCGATGGCGGAGAAG+TGG | 0.551652 | tig0004180:-33957 | None:intergenic |
| GAAGAGGCGTGAGAGGAAGA+AGG | 0.552327 | tig0004180:-34247 | None:intergenic |
| GTGGATTAAGGCGTTTGCGA+TGG | 0.554431 | tig0004180:-33968 | None:intergenic |
| GGCGTGAGAGGAAGAAGGAA+CGG | 0.555683 | tig0004180:-34242 | None:intergenic |
| TTGCGATGGCGGAGAAGTGG+CGG | 0.560803 | tig0004180:-33954 | None:intergenic |
| TAAATCCACATCAATATATG+GGG | 0.566905 | tig0004180:-38136 | None:intergenic |
| GAAGAACTTGAAGATGGAAG+AGG | 0.567823 | tig0004180:-34263 | None:intergenic |
| GGAAGAAGGAACGGCCGAGA+TGG | 0.569332 | tig0004180:-34233 | None:intergenic |
| GATTAAGGCGTTTGCGATGG+CGG | 0.573246 | tig0004180:-33965 | None:intergenic |
| ATCGTCTTCGAACAGGAAGA+CGG | 0.582891 | tig0004180:+34147 | Msa1340560:CDS |
| AGGAAACTCGTTAACCATCT+CGG | 0.585561 | tig0004180:+34219 | Msa1340560:CDS |
| GTGGGCCAGAAGGTGCTCAT+GGG | 0.586262 | tig0004180:+38171 | Msa1340560:CDS |
| CCTGATCTGATCGGAACGAA+CGG | 0.594704 | tig0004180:-34199 | None:intergenic |
| AACGAGTTTCCTGATCTGAT+CGG | 0.599141 | tig0004180:-34208 | None:intergenic |
| GACGTCCCTATTGTATTCAG+AGG | 0.606783 | tig0004180:+34519 | Msa1340560:CDS |
| CGATGGCGGAGAAGTGGCGG+CGG | 0.608841 | tig0004180:-33951 | None:intergenic |
| CGAAGACGATGCTCGGAACG+CGG | 0.618391 | tig0004180:-34134 | None:intergenic |
| TGAGTTGGATGTGGGCCAGA+AGG | 0.624190 | tig0004180:+38161 | Msa1340560:CDS |
| GATTTAAGTGAGTTGGATGT+GGG | 0.629473 | tig0004180:+38153 | Msa1340560:CDS |
| ACTTTCAACCAAGCATCTGA+CGG | 0.637239 | tig0004180:-34495 | None:intergenic |
| AATCTTTGCGGGGAATGGCG+AGG | 0.644316 | tig0004180:-34074 | None:intergenic |
| ATCCGATAAACATACAAGGT+CGG | 0.652992 | tig0004180:-38537 | None:intergenic |
| ACATATCCGATAAACATACA+AGG | 0.655811 | tig0004180:-38541 | None:intergenic |
| AAGCCGTCGAGGTAGGTTAG+GGG | 0.664900 | tig0004180:-34018 | None:intergenic |
| GAACAGGAAGACGGTCAGCA+CGG | 0.669527 | tig0004180:+34156 | Msa1340560:CDS |
| CAACCCCTAACCTACCTCGA+CGG | 0.677651 | tig0004180:+34015 | Msa1340560:CDS |
| AAATCCACATCAATATATGG+GGG | 0.690982 | tig0004180:-38135 | None:intergenic |
| ACTCAAATGCATACACTGCG+AGG | 0.694977 | tig0004180:-34348 | None:intergenic |
| CAGGAAGACGGTCAGCACGG+TGG | 0.739041 | tig0004180:+34159 | Msa1340560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTATTTTATTGCA+TGG | - | tig0004180:34966-34985 | None:intergenic | 10.0% |
| !!! | ATCAATTAATTGTAATTTTA+TGG | + | tig0004180:35197-35216 | Msa1340560:intron | 10.0% |
| !!! | AGATTTTTTATAATGAAAAT+AGG | - | tig0004180:35555-35574 | None:intergenic | 10.0% |
| !! | ATCATCATTATAAAAAATAT+CGG | - | tig0004180:36673-36692 | None:intergenic | 10.0% |
| !! | AAATGCAAATTGATATTAAA+GGG | - | tig0004180:35964-35983 | None:intergenic | 15.0% |
| !! | AAAATGCAAATTGATATTAA+AGG | - | tig0004180:35965-35984 | None:intergenic | 15.0% |
| !! | ATTTGAAAACATAAAATTGA+TGG | + | tig0004180:36213-36232 | Msa1340560:intron | 15.0% |
| !! | AATATATAAAACCAATTTCA+TGG | + | tig0004180:36310-36329 | Msa1340560:intron | 15.0% |
| !! | AATTCAGTTACTAATTTAAT+GGG | - | tig0004180:36380-36399 | None:intergenic | 15.0% |
| !! | AAATTCAGTTACTAATTTAA+TGG | - | tig0004180:36381-36400 | None:intergenic | 15.0% |
| !! | AATATTCACTTAAAATTGAA+TGG | - | tig0004180:36482-36501 | None:intergenic | 15.0% |
| !! | TATATATATAGTTAGTACTT+AGG | - | tig0004180:36557-36576 | None:intergenic | 15.0% |
| !! | TCATCATTATAAAAAATATC+GGG | - | tig0004180:36672-36691 | None:intergenic | 15.0% |
| !! | TTAGTATTTGGTAAATAAAT+AGG | + | tig0004180:36953-36972 | Msa1340560:intron | 15.0% |
| !! | ATAATCATTTAATGTTTGAA+TGG | + | tig0004180:37055-37074 | Msa1340560:intron | 15.0% |
| !! | AATAATGAAAACATTAATAG+TGG | - | tig0004180:37606-37625 | None:intergenic | 15.0% |
| !! | TCTTTGAATAATTGAATTGA+TGG | + | tig0004180:34397-34416 | Msa1340560:intron | 20.0% |
| !! | TTTGAATGTGACATTTATAA+GGG | + | tig0004180:34470-34489 | Msa1340560:CDS | 20.0% |
| !! | AAAAAACAAACACAAATTGT+CGG | - | tig0004180:34708-34727 | None:intergenic | 20.0% |
| !! | GATTGAATTATAGTAAACTA+AGG | + | tig0004180:34999-35018 | Msa1340560:intron | 20.0% |
| !! | TTATAGTAAACTAAGGTTAA+TGG | + | tig0004180:35006-35025 | Msa1340560:intron | 20.0% |
| !!! | TGATTTTTTTTCATTCTCAA+CGG | - | tig0004180:35181-35200 | None:intergenic | 20.0% |
| !! | AATGCAAATTGATATTAAAG+GGG | - | tig0004180:35963-35982 | None:intergenic | 20.0% |
| !!! | AAAGATTTAGACCAATTTTA+TGG | - | tig0004180:36266-36285 | None:intergenic | 20.0% |
| !!! | ATTAAATTGGTTTAATCTAG+AGG | - | tig0004180:36510-36529 | None:intergenic | 20.0% |
| !! | TCTAGATTAAACCAATTTAA+TGG | + | tig0004180:36509-36528 | Msa1340560:intron | 20.0% |
| !! | ACTAACTATATATATATGCT+AGG | + | tig0004180:36561-36580 | Msa1340560:intron | 20.0% |
| !! | TTATAATGATGATTAGCATT+TGG | + | tig0004180:36680-36699 | Msa1340560:intron | 20.0% |
| !! | TTATCATGATAGTTAGTATT+TGG | + | tig0004180:36941-36960 | Msa1340560:intron | 20.0% |
| !! | TAACATATAGTATGTATTGT+AGG | + | tig0004180:37246-37265 | Msa1340560:intron | 20.0% |
| !! | ATACAAAGTAAGATTTGTAT+CGG | + | tig0004180:37269-37288 | Msa1340560:intron | 20.0% |
| !! | TTTAGTCAATAAAATGCAAA+AGG | - | tig0004180:37393-37412 | None:intergenic | 20.0% |
| !!! | TTCAAAAATTGATTTCCTTA+TGG | + | tig0004180:37813-37832 | Msa1340560:intron | 20.0% |
| !! | ATATATTAATATCCATACCA+AGG | - | tig0004180:37955-37974 | None:intergenic | 20.0% |
| !! | TTAAATCCACATCAATATAT+GGG | - | tig0004180:38140-38159 | None:intergenic | 20.0% |
| ! | GATTAAACTCACAAATCAAA+AGG | - | tig0004180:34379-34398 | None:intergenic | 25.0% |
| !!! | ATTGAATTGATGGATTGTAT+TGG | + | tig0004180:34407-34426 | Msa1340560:intron | 25.0% |
| ! | CTTATAAATGTCACATTCAA+AGG | - | tig0004180:34471-34490 | None:intergenic | 25.0% |
| ! | CTTTGAATGTGACATTTATA+AGG | + | tig0004180:34469-34488 | Msa1340560:CDS | 25.0% |
| ! | ACCAAAAATGTCACAAATTA+GGG | - | tig0004180:34586-34605 | None:intergenic | 25.0% |
| !!! | TTTTTGGTGTAATAATGTAC+TGG | + | tig0004180:34598-34617 | Msa1340560:intron | 25.0% |
| ! | AATTCAGTAAAGCTCAATTA+CGG | - | tig0004180:35055-35074 | None:intergenic | 25.0% |
| ! | TACAAAATCTAATATCCCTT+TGG | + | tig0004180:35074-35093 | Msa1340560:intron | 25.0% |
| ! | AGAAGGAAAAATTGTAAACA+TGG | - | tig0004180:35125-35144 | None:intergenic | 25.0% |
| ! | AATCTTACAAATGAATCCAT+TGG | - | tig0004180:35265-35284 | None:intergenic | 25.0% |
| ! | TTCATTTGTAAGATTTGTCA+TGG | + | tig0004180:35270-35289 | Msa1340560:intron | 25.0% |
| ! | TTTGTAATTGTATGTCTGTA+TGG | - | tig0004180:35355-35374 | None:intergenic | 25.0% |
| ! | ACAAATTAGGAGAAAAATCA+GGG | - | tig0004180:35477-35496 | None:intergenic | 25.0% |
| ! | AACAAATTAGGAGAAAAATC+AGG | - | tig0004180:35478-35497 | None:intergenic | 25.0% |
| ! | CGTAGTTTACTATAATTCAA+TGG | + | tig0004180:35585-35604 | Msa1340560:intron | 25.0% |
| ! | TGTATGCATATATATGAGTT+AGG | + | tig0004180:35716-35735 | Msa1340560:intron | 25.0% |
| !!! | GTAGGTTTTTGTTTTATTCT+TGG | + | tig0004180:35839-35858 | Msa1340560:intron | 25.0% |
| !!! | ATAAGAATTTGTTGGAATAG+AGG | - | tig0004180:35918-35937 | None:intergenic | 25.0% |
| ! | CTATTCCAACAAATTCTTAT+AGG | + | tig0004180:35918-35937 | Msa1340560:intron | 25.0% |
| ! | CAATTCCTATAAGAATTTGT+TGG | - | tig0004180:35926-35945 | None:intergenic | 25.0% |
| ! | ATGCAAATTGATATTAAAGG+GGG | - | tig0004180:35962-35981 | None:intergenic | 25.0% |
| !!! | AATTTGCATTTTAAGTCACA+AGG | + | tig0004180:35973-35992 | Msa1340560:intron | 25.0% |
| ! | CAATTACTAAAAGCGAAATT+TGG | + | tig0004180:36026-36045 | Msa1340560:intron | 25.0% |
| !! | TTTTTATCTGTCCAAAGAAA+GGG | - | tig0004180:36107-36126 | None:intergenic | 25.0% |
| !!! | TTTTTTATCTGTCCAAAGAA+AGG | - | tig0004180:36108-36127 | None:intergenic | 25.0% |
| ! | AACTTAAAAATTTGTACGAC+AGG | - | tig0004180:36136-36155 | None:intergenic | 25.0% |
| !!! | CGTACAAATTTTTAAGTTCA+TGG | + | tig0004180:36138-36157 | Msa1340560:intron | 25.0% |
| !! | AAACATAAAATTGATGGCAA+CGG | + | tig0004180:36219-36238 | Msa1340560:intron | 25.0% |
| ! | TTTAAGAGGATCCATAAAAT+TGG | + | tig0004180:36252-36271 | Msa1340560:intron | 25.0% |
| ! | TTTCATCAAAACCATGAAAT+TGG | - | tig0004180:36324-36343 | None:intergenic | 25.0% |
| ! | TGATGAAATTGAAAACTTCA+TGG | + | tig0004180:36336-36355 | Msa1340560:intron | 25.0% |
| ! | AACTATATATATATGCTAGG+TGG | + | tig0004180:36564-36583 | Msa1340560:intron | 25.0% |
| ! | TTAGCATTTGGTAGATAAAT+AGG | + | tig0004180:36692-36711 | Msa1340560:intron | 25.0% |
| !! | GATAAATAGGTTTAAGACTT+AGG | + | tig0004180:36705-36724 | Msa1340560:intron | 25.0% |
| ! | ATAACCATTTAATGTATGAG+TGG | + | tig0004180:36766-36785 | Msa1340560:intron | 25.0% |
| ! | ATAACCACTCATACATTAAA+TGG | - | tig0004180:36773-36792 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGACAGAGTCT+TGG | - | tig0004180:36980-36999 | None:intergenic | 25.0% |
| ! | GACTCTGTCAAAAAAAAAAT+AGG | + | tig0004180:36981-37000 | Msa1340560:intron | 25.0% |
| !! | AAAAAATAGGTCTAAGACTT+TGG | + | tig0004180:36994-37013 | Msa1340560:intron | 25.0% |
| ! | TAGTTTATACAAAGATCATG+CGG | - | tig0004180:37129-37148 | None:intergenic | 25.0% |
| !! | TAAGTCCTTGTTTATATGTT+TGG | - | tig0004180:37221-37240 | None:intergenic | 25.0% |
| ! | AAGTCAGAAATGTTCAATAA+TGG | - | tig0004180:37898-37917 | None:intergenic | 25.0% |
| ! | TAAATCCACATCAATATATG+GGG | - | tig0004180:38139-38158 | None:intergenic | 25.0% |
| ! | CTTAAATCCACATCAATATA+TGG | - | tig0004180:38141-38160 | None:intergenic | 25.0% |
| ! | TGAAGCTGTTTGTAAAATTA+TGG | + | tig0004180:38239-38258 | Msa1340560:CDS | 25.0% |
| ! | GAAGCTGTTTGTAAAATTAT+GGG | + | tig0004180:38240-38259 | Msa1340560:CDS | 25.0% |
| ! | AGATACAATAAGTAGTTACT+TGG | - | tig0004180:38298-38317 | None:intergenic | 25.0% |
| ! | GTAACTACTTATTGTATCTT+TGG | + | tig0004180:38299-38318 | Msa1340560:exon | 25.0% |
| ! | ACTTGCTCAATATAAATGTT+TGG | - | tig0004180:38617-38636 | None:intergenic | 25.0% |
| GGTTTGAATCTGAATCAAAT+TGG | - | tig0004180:34290-34309 | None:intergenic | 30.0% | |
| CAAAAATGTCACAAATTAGG+GGG | - | tig0004180:34584-34603 | None:intergenic | 30.0% | |
| CCAAAAATGTCACAAATTAG+GGG | - | tig0004180:34585-34604 | None:intergenic | 30.0% | |
| CACCAAAAATGTCACAAATT+AGG | - | tig0004180:34587-34606 | None:intergenic | 30.0% | |
| !! | AGGAGTATTTAACTCTAAAG+AGG | - | tig0004180:34758-34777 | None:intergenic | 30.0% |
| TTGTTTGTCACAATAGTGAA+CGG | - | tig0004180:34798-34817 | None:intergenic | 30.0% | |
| GGTTTGAGCTAATGAATTAA+AGG | + | tig0004180:34861-34880 | Msa1340560:intron | 30.0% | |
| AGCTAATGAATTAAAGGAGT+TGG | + | tig0004180:34867-34886 | Msa1340560:intron | 30.0% | |
| GCTAATGAATTAAAGGAGTT+GGG | + | tig0004180:34868-34887 | Msa1340560:intron | 30.0% | |
| AAATTGTAAACATGGTAGGA+GGG | - | tig0004180:35117-35136 | None:intergenic | 30.0% | |
| AAAATTGTAAACATGGTAGG+AGG | - | tig0004180:35118-35137 | None:intergenic | 30.0% | |
| GGAAAAATTGTAAACATGGT+AGG | - | tig0004180:35121-35140 | None:intergenic | 30.0% | |
| ATCGCAAAATGATACATCAA+TGG | - | tig0004180:35320-35339 | None:intergenic | 30.0% | |
| ! | ATTGATGTATCATTTTGCGA+TGG | + | tig0004180:35319-35338 | Msa1340560:intron | 30.0% |
| GCACAAAATTATCACAAACA+TGG | + | tig0004180:35408-35427 | Msa1340560:intron | 30.0% | |
| CAAAATTATCACAAACATGG+CGG | + | tig0004180:35411-35430 | Msa1340560:intron | 30.0% | |
| !! | TCCTAATTTGTTTGCCAAAA+CGG | + | tig0004180:35486-35505 | Msa1340560:intron | 30.0% |
| ! | AAAATTTGATATCCCCGTTT+TGG | - | tig0004180:35503-35522 | None:intergenic | 30.0% |
| GAAACGAGAACAATTAATCA+TGG | - | tig0004180:35611-35630 | None:intergenic | 30.0% | |
| TCGCTCCCTATATATATTAA+AGG | + | tig0004180:35659-35678 | Msa1340560:intron | 30.0% | |
| CGCTCCCTATATATATTAAA+GGG | + | tig0004180:35660-35679 | Msa1340560:intron | 30.0% | |
| GCTGCCCTTTAATATATATA+GGG | - | tig0004180:35667-35686 | None:intergenic | 30.0% | |
| TATGCATACAATACACCAAA+TGG | - | tig0004180:35706-35725 | None:intergenic | 30.0% | |
| GAATAGAGGTGAAATTTCAT+TGG | - | tig0004180:35904-35923 | None:intergenic | 30.0% | |
| AAATTGATATTAAAGGGGGA+AGG | - | tig0004180:35958-35977 | None:intergenic | 30.0% | |
| !! | AGCTAATTGAAGAGAGTATT+AGG | + | tig0004180:35999-36018 | Msa1340560:intron | 30.0% |
| TAAAAGCGAAATTTGGACAA+AGG | + | tig0004180:36033-36052 | Msa1340560:intron | 30.0% | |
| ATGGATCCTCTTAAAGATTT+AGG | - | tig0004180:36247-36266 | None:intergenic | 30.0% | |
| TTAGTAACTGAATTTCTGTG+CGG | + | tig0004180:36386-36405 | Msa1340560:intron | 30.0% | |
| CCAAATCTCATCCATTAAAT+TGG | - | tig0004180:36523-36542 | None:intergenic | 30.0% | |
| ! | CCAATTTAATGGATGAGATT+TGG | + | tig0004180:36520-36539 | Msa1340560:intron | 30.0% |
| ATAAGCTGTTTAATGCTTAC+AGG | + | tig0004180:36795-36814 | Msa1340560:intron | 30.0% | |
| TAAGCTGTTTAATGCTTACA+GGG | + | tig0004180:36796-36815 | Msa1340560:intron | 30.0% | |
| CTCTTCCAAACATATAAACA+AGG | + | tig0004180:37213-37232 | Msa1340560:intron | 30.0% | |
| AAAACCTGAGTTTATGTGAT+GGG | + | tig0004180:37771-37790 | Msa1340560:intron | 30.0% | |
| GAATAGTGAAAAACTCCATA+AGG | - | tig0004180:37831-37850 | None:intergenic | 30.0% | |
| AAGATTTATGCCTATGTTGA+TGG | + | tig0004180:37858-37877 | Msa1340560:intron | 30.0% | |
| TGCTTACAATAGTCTTTACT+TGG | + | tig0004180:38021-38040 | Msa1340560:intron | 30.0% | |
| ! | ATACTTAACAGTCCTTTTGA+TGG | - | tig0004180:38094-38113 | None:intergenic | 30.0% |
| AAATCCACATCAATATATGG+GGG | - | tig0004180:38138-38157 | None:intergenic | 30.0% | |
| ! | TACAAACAGCTTCATCTTTT+GGG | - | tig0004180:38233-38252 | None:intergenic | 30.0% |
| ! | TTACAAACAGCTTCATCTTT+TGG | - | tig0004180:38234-38253 | None:intergenic | 30.0% |
| TTTGTAAAATTATGGGCCAA+AGG | + | tig0004180:38247-38266 | Msa1340560:CDS | 30.0% | |
| TTGTAAAATTATGGGCCAAA+GGG | + | tig0004180:38248-38267 | Msa1340560:CDS | 30.0% | |
| !! | AGTAGTTACTTGGTTTTCTT+TGG | - | tig0004180:38288-38307 | None:intergenic | 30.0% |
| ACTACTTATTGTATCTTTGG+TGG | + | tig0004180:38302-38321 | Msa1340560:exon | 30.0% | |
| CCAAGAATCAACTAATAAGA+TGG | - | tig0004180:38378-38397 | None:intergenic | 30.0% | |
| ! | CCATCTTATTAGTTGATTCT+TGG | + | tig0004180:38375-38394 | Msa1340560:three_prime_UTR | 30.0% |
| CAGTTATTGTGAACAAAACT+AGG | - | tig0004180:38427-38446 | None:intergenic | 30.0% | |
| ACATATCCGATAAACATACA+AGG | - | tig0004180:38544-38563 | None:intergenic | 30.0% | |
| !! | TATTTTTGCCGGAATCTTTG+CGG | - | tig0004180:34089-34108 | None:intergenic | 35.0% |
| ATTGGTGAAGAACTTGAAGA+TGG | - | tig0004180:34272-34291 | None:intergenic | 35.0% | |
| TGACAGATTCATTTGAAAGC+TGG | + | tig0004180:34435-34454 | Msa1340560:intron | 35.0% | |
| CATCTCCTCTGAATACAATA+GGG | - | tig0004180:34527-34546 | None:intergenic | 35.0% | |
| TCATCTCCTCTGAATACAAT+AGG | - | tig0004180:34528-34547 | None:intergenic | 35.0% | |
| !! | CCCCTAATTTGTGACATTTT+TGG | + | tig0004180:34582-34601 | Msa1340560:intron | 35.0% |
| ! | GAGTTAAATACTCCTGCTTT+TGG | + | tig0004180:34763-34782 | Msa1340560:intron | 35.0% |
| TATCCCTTTGGCAAACAAAT+AGG | + | tig0004180:35086-35105 | Msa1340560:intron | 35.0% | |
| CTAAAGCAACGATCATAAGA+AGG | - | tig0004180:35142-35161 | None:intergenic | 35.0% | |
| ! | CTTCTTATGATCGTTGCTTT+AGG | + | tig0004180:35140-35159 | Msa1340560:intron | 35.0% |
| TACTATTTGCCAAATGCCAA+TGG | + | tig0004180:35246-35265 | Msa1340560:intron | 35.0% | |
| CAAATGAATCCATTGGCATT+TGG | - | tig0004180:35258-35277 | None:intergenic | 35.0% | |
| !! | CCTAATTTGTTTGCCAAAAC+GGG | + | tig0004180:35487-35506 | Msa1340560:intron | 35.0% |
| !! | CTAATTTGTTTGCCAAAACG+GGG | + | tig0004180:35488-35507 | Msa1340560:intron | 35.0% |
| GGCTGCCCTTTAATATATAT+AGG | - | tig0004180:35668-35687 | None:intergenic | 35.0% | |
| ATATATATTAAAGGGCAGCC+CGG | + | tig0004180:35668-35687 | Msa1340560:intron | 35.0% | |
| CATACAATACACCAAATGGT+GGG | - | tig0004180:35702-35721 | None:intergenic | 35.0% | |
| GATTAAAAGTTTAGACCGTC+TGG | - | tig0004180:35759-35778 | None:intergenic | 35.0% | |
| ! | GGTCTAAACTTTTAATCGAG+CGG | + | tig0004180:35762-35781 | Msa1340560:intron | 35.0% |
| CATCTACATGATAACTTGAG+TGG | + | tig0004180:35794-35813 | Msa1340560:intron | 35.0% | |
| CAAAGGTTATACCCTTTCTT+TGG | + | tig0004180:36093-36112 | Msa1340560:intron | 35.0% | |
| GATCTTAAAGATGAACGCAA+GGG | - | tig0004180:36184-36203 | None:intergenic | 35.0% | |
| AGATCTTAAAGATGAACGCA+AGG | - | tig0004180:36185-36204 | None:intergenic | 35.0% | |
| ACGGATCCTAAATCTTTAAG+AGG | + | tig0004180:36238-36257 | Msa1340560:intron | 35.0% | |
| ATGAAGTTCTCTGTTCCATA+TGG | + | tig0004180:36610-36629 | Msa1340560:intron | 35.0% | |
| TGGATATCCATAACAAAGTG+TGG | + | tig0004180:36634-36653 | Msa1340560:intron | 35.0% | |
| ! | TTCAAGTTCTCTGTTCCATA+TGG | + | tig0004180:36868-36887 | Msa1340560:intron | 35.0% |
| TGTTCCATATGGCTATTCAT+AGG | + | tig0004180:36879-36898 | Msa1340560:intron | 35.0% | |
| CTTTCCTATGAATAGCCATA+TGG | - | tig0004180:36886-36905 | None:intergenic | 35.0% | |
| !! | TCTAAGACTTTGGAGTTGTT+TGG | + | tig0004180:37004-37023 | Msa1340560:intron | 35.0% |
| ACTGAAGTGTAAACAGTGTA+TGG | + | tig0004180:37165-37184 | Msa1340560:intron | 35.0% | |
| CTGAAGTGTAAACAGTGTAT+GGG | + | tig0004180:37166-37185 | Msa1340560:intron | 35.0% | |
| TGAAGTGTAAACAGTGTATG+GGG | + | tig0004180:37167-37186 | Msa1340560:intron | 35.0% | |
| ! | AGTAAGATTTGTATCGGTGA+AGG | + | tig0004180:37275-37294 | Msa1340560:intron | 35.0% |
| ! | GTAAGATTTGTATCGGTGAA+GGG | + | tig0004180:37276-37295 | Msa1340560:intron | 35.0% |
| TAAAATGCAAAAGGACCGTT+CGG | - | tig0004180:37384-37403 | None:intergenic | 35.0% | |
| !! | AGCAGCATTCTAAAATTCAG+AGG | - | tig0004180:37638-37657 | None:intergenic | 35.0% |
| ! | TTTAGAATGCTGCTCTGTAT+TGG | + | tig0004180:37644-37663 | Msa1340560:intron | 35.0% |
| TTAGAATGCTGCTCTGTATT+GGG | + | tig0004180:37645-37664 | Msa1340560:intron | 35.0% | |
| GTAACAATAACTAGCACAAC+AGG | - | tig0004180:37727-37746 | None:intergenic | 35.0% | |
| GAAAACCTGAGTTTATGTGA+TGG | + | tig0004180:37770-37789 | Msa1340560:intron | 35.0% | |
| AAACCTGAGTTTATGTGATG+GGG | + | tig0004180:37772-37791 | Msa1340560:intron | 35.0% | |
| CTTCCTTGAATACCATCAAA+AGG | + | tig0004180:38079-38098 | Msa1340560:CDS | 35.0% | |
| !! | AGTCCTTTTGATGGTATTCA+AGG | - | tig0004180:38085-38104 | None:intergenic | 35.0% |
| TATTCCCCCATATATTGATG+TGG | + | tig0004180:38131-38150 | Msa1340560:CDS | 35.0% | |
| TGATGTGGATTTAAGTGAGT+TGG | + | tig0004180:38146-38165 | Msa1340560:CDS | 35.0% | |
| ! | GATTTAAGTGAGTTGGATGT+GGG | + | tig0004180:38153-38172 | Msa1340560:CDS | 35.0% |
| TACCGACCTTGTATGTTTAT+CGG | + | tig0004180:38535-38554 | Msa1340560:three_prime_UTR | 35.0% | |
| ATCCGATAAACATACAAGGT+CGG | - | tig0004180:38540-38559 | None:intergenic | 35.0% | |
| !!! | GTTTTGGGTTTTGGGTTTTG+CGG | - | tig0004180:33876-33895 | None:intergenic | 40.0% |
| !!! | GAGAAAGGGTTTTGGGTTTT+GGG | - | tig0004180:33884-33903 | None:intergenic | 40.0% |
| !!! | AGAGAAAGGGTTTTGGGTTT+TGG | - | tig0004180:33885-33904 | None:intergenic | 40.0% |
| ! | TGGTGAAGAGAAAGGGTTTT+GGG | - | tig0004180:33891-33910 | None:intergenic | 40.0% |
| TGCATTGTGGTGAAGAGAAA+GGG | - | tig0004180:33898-33917 | None:intergenic | 40.0% | |
| ATGCATTGTGGTGAAGAGAA+AGG | - | tig0004180:33899-33918 | None:intergenic | 40.0% | |
| !! | TCGTACTTTGGGTTAGGTTT+TGG | - | tig0004180:34045-34064 | None:intergenic | 40.0% |
| ! | ATTTTTGCCGGAATCTTTGC+GGG | - | tig0004180:34088-34107 | None:intergenic | 40.0% |
| AACGAGTTTCCTGATCTGAT+CGG | - | tig0004180:34211-34230 | None:intergenic | 40.0% | |
| AGGAAACTCGTTAACCATCT+CGG | + | tig0004180:34219-34238 | Msa1340560:CDS | 40.0% | |
| GAAGAACTTGAAGATGGAAG+AGG | - | tig0004180:34266-34285 | None:intergenic | 40.0% | |
| CGATGATGTCTTCGTCATTA+GGG | - | tig0004180:34311-34330 | None:intergenic | 40.0% | |
| TCGATGATGTCTTCGTCATT+AGG | - | tig0004180:34312-34331 | None:intergenic | 40.0% | |
| ACTTTCAACCAAGCATCTGA+CGG | - | tig0004180:34498-34517 | None:intergenic | 40.0% | |
| AGAGGAGATGATATATCTCC+TGG | + | tig0004180:34537-34556 | Msa1340560:CDS | 40.0% | |
| ATATCTCCTGGACTCAAGAA+AGG | + | tig0004180:34549-34568 | Msa1340560:CDS | 40.0% | |
| ATCTAACCTTTCTTGAGTCC+AGG | - | tig0004180:34558-34577 | None:intergenic | 40.0% | |
| TTGTCACAATAGTGAACGGA+AGG | - | tig0004180:34794-34813 | None:intergenic | 40.0% | |
| AGCAGTTAATCATAGCAGCT+TGG | + | tig0004180:34819-34838 | Msa1340560:intron | 40.0% | |
| GCAGTTAATCATAGCAGCTT+GGG | + | tig0004180:34820-34839 | Msa1340560:intron | 40.0% | |
| CCTCCTATTTGTTTGCCAAA+GGG | - | tig0004180:35092-35111 | None:intergenic | 40.0% | |
| CCTTTGGCAAACAAATAGGA+GGG | + | tig0004180:35090-35109 | Msa1340560:intron | 40.0% | |
| ! | GATGTATCATTTTGCGATGG+TGG | + | tig0004180:35322-35341 | Msa1340560:intron | 40.0% |
| CAAGTTCTATTGCACATCGT+TGG | - | tig0004180:35445-35464 | None:intergenic | 40.0% | |
| CAACGATGTGCAATAGAACT+TGG | + | tig0004180:35443-35462 | Msa1340560:intron | 40.0% | |
| !! | CCCGTTTTGGCAAACAAATT+AGG | - | tig0004180:35490-35509 | None:intergenic | 40.0% |
| ATATATATAGGGAGCGACTC+AGG | - | tig0004180:35656-35675 | None:intergenic | 40.0% | |
| TATATATTAAAGGGCAGCCC+GGG | + | tig0004180:35669-35688 | Msa1340560:intron | 40.0% | |
| GCATACAATACACCAAATGG+TGG | - | tig0004180:35703-35722 | None:intergenic | 40.0% | |
| AAGTTTAGACCGTCTGGATT+TGG | - | tig0004180:35753-35772 | None:intergenic | 40.0% | |
| !! | TTGGTAGTGATTACGTTTCC+AGG | + | tig0004180:35858-35877 | Msa1340560:intron | 40.0% |
| ! | ATTTCATTGGCTGCAGAAGA+GGG | - | tig0004180:35891-35910 | None:intergenic | 40.0% |
| ! | AATTTCATTGGCTGCAGAAG+AGG | - | tig0004180:35892-35911 | None:intergenic | 40.0% |
| ! | AAAGGGTATAACCTTTGTCC+AGG | - | tig0004180:36090-36109 | None:intergenic | 40.0% |
| AATTTCTGTGCGGTCAATTC+TGG | + | tig0004180:36396-36415 | Msa1340560:intron | 40.0% | |
| ATTTCTGTGCGGTCAATTCT+GGG | + | tig0004180:36397-36416 | Msa1340560:intron | 40.0% | |
| ! | GGGAGTGTAGAAATTGAGAT+CGG | + | tig0004180:36417-36436 | Msa1340560:intron | 40.0% |
| AGAAATTGAGATCGGTGAAG+AGG | + | tig0004180:36425-36444 | Msa1340560:intron | 40.0% | |
| !! | TGGATGAGATTTGGTGTCAA+TGG | + | tig0004180:36529-36548 | Msa1340560:intron | 40.0% |
| GTTATGGATATCCAGCCATA+TGG | - | tig0004180:36628-36647 | None:intergenic | 40.0% | |
| CACTGTACCACACTTTGTTA+TGG | - | tig0004180:36644-36663 | None:intergenic | 40.0% | |
| !! | TGCTTACAGGGTTTTATGCT+AGG | + | tig0004180:36808-36827 | Msa1340560:intron | 40.0% |
| !! | TTACAGGGTTTTATGCTAGG+TGG | + | tig0004180:36811-36830 | Msa1340560:intron | 40.0% |
| TTTGATGCCTTGTAACCTAG+CGG | - | tig0004180:37537-37556 | None:intergenic | 40.0% | |
| ! | AGTTTATGTGATGGGGTAGA+CGG | + | tig0004180:37779-37798 | Msa1340560:intron | 40.0% |
| TCACTTTGCACCATCAACAT+AGG | - | tig0004180:37871-37890 | None:intergenic | 40.0% | |
| ! | CTCATCACCACAATTTTTGC+AGG | + | tig0004180:38054-38073 | Msa1340560:intron | 40.0% |
| ! | GGATTTAAGTGAGTTGGATG+TGG | + | tig0004180:38152-38171 | Msa1340560:CDS | 40.0% |
| !! | GGGTGAAGAAGTTTTAATGC+AGG | - | tig0004180:38213-38232 | None:intergenic | 40.0% |
| GTTGTGTTTCAGAAACCCTT+TGG | - | tig0004180:38266-38285 | None:intergenic | 40.0% | |
| ! | TGTAGAGCTTTGTGTAACTC+AGG | - | tig0004180:38492-38511 | None:intergenic | 40.0% |
| TGAGGATAGTTGAGAGGAGA+GGG | - | tig0004180:33850-33869 | None:intergenic | 45.0% | |
| !!! | TTTTGGGTTTTGCGGTAGTG+AGG | - | tig0004180:33868-33887 | None:intergenic | 45.0% |
| ! | GTGGTGAAGAGAAAGGGTTT+TGG | - | tig0004180:33892-33911 | None:intergenic | 45.0% |
| AGGTTAGGGGTTGTAGTATG+TGG | - | tig0004180:34008-34027 | None:intergenic | 45.0% | |
| ! | GTTTCGTCGTACTTTGGGTT+AGG | - | tig0004180:34051-34070 | None:intergenic | 45.0% |
| GGATGGTTTCGTCGTACTTT+GGG | - | tig0004180:34056-34075 | None:intergenic | 45.0% | |
| AGGATGGTTTCGTCGTACTT+TGG | - | tig0004180:34057-34076 | None:intergenic | 45.0% | |
| ! | TTTTTGCCGGAATCTTTGCG+GGG | - | tig0004180:34087-34106 | None:intergenic | 45.0% |
| !! | CTTGGCGGAGATATTTTTGC+CGG | - | tig0004180:34100-34119 | None:intergenic | 45.0% |
| ATCGTCTTCGAACAGGAAGA+CGG | + | tig0004180:34147-34166 | Msa1340560:CDS | 45.0% | |
| ACTCAAATGCATACACTGCG+AGG | - | tig0004180:34351-34370 | None:intergenic | 45.0% | |
| GACGTCCCTATTGTATTCAG+AGG | + | tig0004180:34519-34538 | Msa1340560:CDS | 45.0% | |
| GTTAATCATAGCAGCTTGGG+CGG | + | tig0004180:34823-34842 | Msa1340560:intron | 45.0% | |
| CCCTTTGGCAAACAAATAGG+AGG | + | tig0004180:35089-35108 | Msa1340560:intron | 45.0% | |
| CCCTCCTATTTGTTTGCCAA+AGG | - | tig0004180:35093-35112 | None:intergenic | 45.0% | |
| GTTCTATTGCACATCGTTGG+TGG | - | tig0004180:35442-35461 | None:intergenic | 45.0% | |
| TACAACACGTGAGTACAGAG+GGG | - | tig0004180:35822-35841 | None:intergenic | 45.0% | |
| CTACAACACGTGAGTACAGA+GGG | - | tig0004180:35823-35842 | None:intergenic | 45.0% | |
| AGAGGAATGTTCCTGGACAA+AGG | + | tig0004180:36076-36095 | Msa1340560:intron | 45.0% | |
| !! | AGATCGGTGAAGAGGTACTA+AGG | + | tig0004180:36433-36452 | Msa1340560:intron | 45.0% |
| AGTTCTCTGTTCCATATGGC+TGG | + | tig0004180:36614-36633 | Msa1340560:intron | 45.0% | |
| ATGCTAGGTGGTATGTGCAA+TGG | + | tig0004180:36576-36595 | Msa1340560:intron | 45.0% | |
| TGCTAGGTGGTATGTGCAAT+GGG | + | tig0004180:36824-36843 | Msa1340560:intron | 45.0% | |
| TGGCTATTCATAGGAAAGCG+TGG | + | tig0004180:36888-36907 | Msa1340560:intron | 45.0% | |
| CCTCAATAAGCTCTTCCGAA+CGG | + | tig0004180:37366-37385 | Msa1340560:intron | 45.0% | |
| AATACTCCAGTCACCACTGT+GGG | + | tig0004180:37440-37459 | Msa1340560:intron | 45.0% | |
| ATAACCTTACCATGAGCGTC+AGG | + | tig0004180:37485-37504 | Msa1340560:intron | 45.0% | |
| TAGAAACAACCTGACGCTCA+TGG | - | tig0004180:37497-37516 | None:intergenic | 45.0% | |
| TGCTCTGTATTGGGATGACA+AGG | + | tig0004180:37654-37673 | Msa1340560:intron | 45.0% | |
| CTACCCCATCACATAAACTC+AGG | - | tig0004180:37778-37797 | None:intergenic | 45.0% | |
| !! | TGTTGATGGTGCAAAGTGAC+TGG | + | tig0004180:37872-37891 | Msa1340560:intron | 45.0% |
| GTCCATATCAGTTAGAGCAG+GGG | - | tig0004180:37931-37950 | None:intergenic | 45.0% | |
| CGTCCATATCAGTTAGAGCA+GGG | - | tig0004180:37932-37951 | None:intergenic | 45.0% | |
| TCTAACTGATATGGACGCCT+TGG | + | tig0004180:37935-37954 | Msa1340560:intron | 45.0% | |
| !! | GGAAGCACCTGCAAAAATTG+TGG | - | tig0004180:38064-38083 | None:intergenic | 45.0% |
| ATGGGGGAATAATGTCTGCA+GGG | - | tig0004180:38122-38141 | None:intergenic | 45.0% | |
| TATGGGGGAATAATGTCTGC+AGG | - | tig0004180:38123-38142 | None:intergenic | 45.0% | |
| GTGAGGATAGTTGAGAGGAG+AGG | - | tig0004180:33851-33870 | None:intergenic | 50.0% | |
| CGGTAGTGAGGATAGTTGAG+AGG | - | tig0004180:33856-33875 | None:intergenic | 50.0% | |
| ! | GATTAAGGCGTTTGCGATGG+CGG | - | tig0004180:33968-33987 | None:intergenic | 50.0% |
| ! | GTGGATTAAGGCGTTTGCGA+TGG | - | tig0004180:33971-33990 | None:intergenic | 50.0% |
| !! | TGGCTCTGGAGTGTGGATTA+AGG | - | tig0004180:33983-34002 | None:intergenic | 50.0% |
| ! | TGTAGTATGTGGTCTGGCTC+TGG | - | tig0004180:33997-34016 | None:intergenic | 50.0% |
| AGGGGTTGTAGTATGTGGTC+TGG | - | tig0004180:34003-34022 | None:intergenic | 50.0% | |
| AAAGCCGTCGAGGTAGGTTA+GGG | - | tig0004180:34022-34041 | None:intergenic | 50.0% | |
| !! | TTTTGGAAAGCCGTCGAGGT+AGG | - | tig0004180:34028-34047 | None:intergenic | 50.0% |
| !!! | TAGGTTTTGGAAAGCCGTCG+AGG | - | tig0004180:34032-34051 | None:intergenic | 50.0% |
| CGGCAAAAATATCTCCGCCA+AGG | + | tig0004180:34098-34117 | Msa1340560:CDS | 50.0% | |
| TCCTGTTCGAAGACGATGCT+CGG | - | tig0004180:34144-34163 | None:intergenic | 50.0% | |
| GATCGGAACGAACGGAAATG+AGG | - | tig0004180:34194-34213 | None:intergenic | 50.0% | |
| CCTGATCTGATCGGAACGAA+CGG | - | tig0004180:34202-34221 | None:intergenic | 50.0% | |
| CGGAAGGAAAGACCAAAAGC+AGG | - | tig0004180:34778-34797 | None:intergenic | 50.0% | |
| ! | TCCAGCTTTCAAGTCTCGCA+GGG | + | tig0004180:34900-34919 | Msa1340560:intron | 50.0% |
| !! | CCGTCTGGATTTGGTGTCAA+CGG | - | tig0004180:35744-35763 | None:intergenic | 50.0% |
| CCGTTGACACCAAATCCAGA+CGG | + | tig0004180:35741-35760 | Msa1340560:intron | 50.0% | |
| ACAACACGTGAGTACAGAGG+GGG | - | tig0004180:35821-35840 | None:intergenic | 50.0% | |
| CCTACAACACGTGAGTACAG+AGG | - | tig0004180:35824-35843 | None:intergenic | 50.0% | |
| CCTCTGTACTCACGTGTTGT+AGG | + | tig0004180:35821-35840 | Msa1340560:intron | 50.0% | |
| !! | GGACAAAGGCATTTACGTCG+TGG | + | tig0004180:36047-36066 | Msa1340560:intron | 50.0% |
| TTTACGTCGTGGTTGTGCAG+AGG | + | tig0004180:36058-36077 | Msa1340560:intron | 50.0% | |
| GTTGTGCAGAGGAATGTTCC+TGG | + | tig0004180:36069-36088 | Msa1340560:intron | 50.0% | |
| TGCTAGGTGGTATGTGCAAC+AGG | + | tig0004180:36577-36596 | Msa1340560:intron | 50.0% | |
| CCGTTCGGAAGAGCTTATTG+AGG | - | tig0004180:37369-37388 | None:intergenic | 50.0% | |
| GAATACTCCAGTCACCACTG+TGG | + | tig0004180:37439-37458 | Msa1340560:intron | 50.0% | |
| ATACTCCAGTCACCACTGTG+GGG | + | tig0004180:37441-37460 | Msa1340560:intron | 50.0% | |
| ACTCTCACTAAACCCCACAG+TGG | - | tig0004180:37456-37475 | None:intergenic | 50.0% | |
| ACAACCTGACGCTCATGGTA+AGG | - | tig0004180:37492-37511 | None:intergenic | 50.0% | |
| GACCCCTGCTCTAACTGATA+TGG | + | tig0004180:37926-37945 | Msa1340560:intron | 50.0% | |
| GCGTCCATATCAGTTAGAGC+AGG | - | tig0004180:37933-37952 | None:intergenic | 50.0% | |
| CTGATATGGACGCCTTGGTA+TGG | + | tig0004180:37940-37959 | Msa1340560:intron | 50.0% | |
| CAACCCCTAACCTACCTCGA+CGG | + | tig0004180:34015-34034 | Msa1340560:CDS | 55.0% | |
| AAGCCGTCGAGGTAGGTTAG+GGG | - | tig0004180:34021-34040 | None:intergenic | 55.0% | |
| GAAAGCCGTCGAGGTAGGTT+AGG | - | tig0004180:34023-34042 | None:intergenic | 55.0% | |
| AATCTTTGCGGGGAATGGCG+AGG | - | tig0004180:34077-34096 | None:intergenic | 55.0% | |
| GCCATTCCCCGCAAAGATTC+CGG | + | tig0004180:34078-34097 | Msa1340560:CDS | 55.0% | |
| ! | TCCGCCAAGGAGCGTAAAGT+TGG | + | tig0004180:34111-34130 | Msa1340560:CDS | 55.0% |
| GCCAACTTTACGCTCCTTGG+CGG | - | tig0004180:34115-34134 | None:intergenic | 55.0% | |
| ! | TCCGAGCATCGTCTTCGAAC+AGG | + | tig0004180:34140-34159 | Msa1340560:CDS | 55.0% |
| GAACAGGAAGACGGTCAGCA+CGG | + | tig0004180:34156-34175 | Msa1340560:CDS | 55.0% | |
| CCGTTCGTTCCGATCAGATC+AGG | + | tig0004180:34199-34218 | Msa1340560:CDS | 55.0% | |
| GGCGTGAGAGGAAGAAGGAA+CGG | - | tig0004180:34245-34264 | None:intergenic | 55.0% | |
| ! | GAAGAGGCGTGAGAGGAAGA+AGG | - | tig0004180:34250-34269 | None:intergenic | 55.0% |
| ! | GAAGATGGAAGAGGCGTGAG+AGG | - | tig0004180:34257-34276 | None:intergenic | 55.0% |
| TAAGGGCTCCGTCAGATGCT+TGG | + | tig0004180:34487-34506 | Msa1340560:CDS | 55.0% | |
| ATCATAGCAGCTTGGGCGGT+TGG | + | tig0004180:34827-34846 | Msa1340560:intron | 55.0% | |
| GGGCGGTTGGATAGCTCAAT+TGG | + | tig0004180:34840-34859 | Msa1340560:intron | 55.0% | |
| ! | GTCCAGCTTTCAAGTCTCGC+AGG | + | tig0004180:34899-34918 | Msa1340560:intron | 55.0% |
| TCCCTGCGAGACTTGAAAGC+TGG | - | tig0004180:34904-34923 | None:intergenic | 55.0% | |
| TATTAAAGGGCAGCCCGGGA+AGG | + | tig0004180:35673-35692 | Msa1340560:intron | 55.0% | |
| ATTAAAGGGCAGCCCGGGAA+GGG | + | tig0004180:35674-35693 | Msa1340560:intron | 55.0% | |
| GCAGAAGAGGGAGGTAAACC+TGG | - | tig0004180:35879-35898 | None:intergenic | 55.0% | |
| ! | TCATTGGCTGCAGAAGAGGG+AGG | - | tig0004180:35888-35907 | None:intergenic | 55.0% |
| CTAAACCCCACAGTGGTGAC+TGG | - | tig0004180:37449-37468 | None:intergenic | 55.0% | |
| GCTGAAAAGCCATGACCGCT+AGG | + | tig0004180:37519-37538 | Msa1340560:intron | 55.0% | |
| GCCATGACCGCTAGGTTACA+AGG | + | tig0004180:37527-37546 | Msa1340560:intron | 55.0% | |
| GCCTTGTAACCTAGCGGTCA+TGG | - | tig0004180:37531-37550 | None:intergenic | 55.0% | |
| ! | TGAGTTGGATGTGGGCCAGA+AGG | + | tig0004180:38161-38180 | Msa1340560:CDS | 55.0% |
| GATCACCCATGAGCACCTTC+TGG | - | tig0004180:38179-38198 | None:intergenic | 55.0% | |
| TGTGCGGGGGAGATGCATTG+TGG | - | tig0004180:33911-33930 | None:intergenic | 60.0% | |
| !! | TTGCGATGGCGGAGAAGTGG+CGG | - | tig0004180:33957-33976 | None:intergenic | 60.0% |
| !! | CGTTTGCGATGGCGGAGAAG+TGG | - | tig0004180:33960-33979 | None:intergenic | 60.0% |
| !! | TGTGGTCTGGCTCTGGAGTG+TGG | - | tig0004180:33990-34009 | None:intergenic | 60.0% |
| TTTGCGGGGAATGGCGAGGA+TGG | - | tig0004180:34073-34092 | None:intergenic | 60.0% | |
| GCCGGAATCTTTGCGGGGAA+TGG | - | tig0004180:34082-34101 | None:intergenic | 60.0% | |
| GCGGCCAACTTTACGCTCCT+TGG | - | tig0004180:34118-34137 | None:intergenic | 60.0% | |
| CGAAGACGATGCTCGGAACG+CGG | - | tig0004180:34137-34156 | None:intergenic | 60.0% | |
| GGAAGAAGGAACGGCCGAGA+TGG | - | tig0004180:34236-34255 | None:intergenic | 60.0% | |
| TTAAAGGGCAGCCCGGGAAG+GGG | + | tig0004180:35675-35694 | Msa1340560:intron | 60.0% | |
| ! | AAATGGTGGGACCCCTTCCC+GGG | - | tig0004180:35689-35708 | None:intergenic | 60.0% |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | tig0004180:35690-35709 | None:intergenic | 60.0% |
| !! | TGTGGGCCAGAAGGTGCTCA+TGG | + | tig0004180:38170-38189 | Msa1340560:CDS | 60.0% |
| !! | GTGGGCCAGAAGGTGCTCAT+GGG | + | tig0004180:38171-38190 | Msa1340560:CDS | 60.0% |
| AAGTGGCGGCGGTGGAGGAA+GGG | - | tig0004180:33943-33962 | None:intergenic | 65.0% | |
| CAGGAAGACGGTCAGCACGG+TGG | + | tig0004180:34159-34178 | Msa1340560:CDS | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | tig0004180:35688-35707 | Msa1340560:intron | 65.0% | |
| ! | AAGGGGCGGAGGAGTGTGCG+GGG | - | tig0004180:33925-33944 | None:intergenic | 70.0% |
| ! | GAAGGGGCGGAGGAGTGTGC+GGG | - | tig0004180:33926-33945 | None:intergenic | 70.0% |
| ! | GGAAGGGGCGGAGGAGTGTG+CGG | - | tig0004180:33927-33946 | None:intergenic | 70.0% |
| AGTGGCGGCGGTGGAGGAAG+GGG | - | tig0004180:33942-33961 | None:intergenic | 70.0% | |
| GAAGTGGCGGCGGTGGAGGA+AGG | - | tig0004180:33944-33963 | None:intergenic | 70.0% | |
| !! | CGATGGCGGAGAAGTGGCGG+CGG | - | tig0004180:33954-33973 | None:intergenic | 70.0% |
| ! | AGGGGCGGAGGAGTGTGCGG+GGG | - | tig0004180:33924-33943 | None:intergenic | 75.0% |
| CGGAGAAGTGGCGGCGGTGG+AGG | - | tig0004180:33948-33967 | None:intergenic | 75.0% | |
| TGGCGGAGAAGTGGCGGCGG+TGG | - | tig0004180:33951-33970 | None:intergenic | 75.0% | |
| ! | GGCGGTGGAGGAAGGGGCGG+AGG | - | tig0004180:33936-33955 | None:intergenic | 80.0% |
| ! | GGCGGCGGTGGAGGAAGGGG+CGG | - | tig0004180:33939-33958 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004180 | gene | 33830 | 38667 | 33830 | ID=Msa1340560;Name=Msa1340560 |
| tig0004180 | mRNA | 33830 | 38667 | 33830 | ID=Msa1340560-mRNA-1;Parent=Msa1340560;Name=Msa1340560-mRNA-1;_AED=0.05;_eAED=0.05;_QI=83|1|1|1|1|1|3|365|266 |
| tig0004180 | exon | 33830 | 34356 | 33830 | ID=Msa1340560-mRNA-1:exon:2708;Parent=Msa1340560-mRNA-1 |
| tig0004180 | exon | 34441 | 34570 | 34441 | ID=Msa1340560-mRNA-1:exon:2709;Parent=Msa1340560-mRNA-1 |
| tig0004180 | exon | 38076 | 38667 | 38076 | ID=Msa1340560-mRNA-1:exon:2710;Parent=Msa1340560-mRNA-1 |
| tig0004180 | five_prime_UTR | 33830 | 33912 | 33830 | ID=Msa1340560-mRNA-1:five_prime_utr;Parent=Msa1340560-mRNA-1 |
| tig0004180 | CDS | 33913 | 34356 | 33913 | ID=Msa1340560-mRNA-1:cds;Parent=Msa1340560-mRNA-1 |
| tig0004180 | CDS | 34441 | 34570 | 34441 | ID=Msa1340560-mRNA-1:cds;Parent=Msa1340560-mRNA-1 |
| tig0004180 | CDS | 38076 | 38302 | 38076 | ID=Msa1340560-mRNA-1:cds;Parent=Msa1340560-mRNA-1 |
| tig0004180 | three_prime_UTR | 38303 | 38667 | 38303 | ID=Msa1340560-mRNA-1:three_prime_utr;Parent=Msa1340560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
