Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088690 | A0A072VQK9 | 98.095 | 210 | 4 | 0 | 1 | 210 | 1 | 210 | 1.19e-147 | 418 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040880 | Msa0088690 | 0.857300 | 1.792639e-62 | -8.615850e-47 |
| Msa0088690 | Msa0102120 | 0.811076 | 8.389759e-51 | -8.615850e-47 |
| Msa0088690 | Msa0135490 | 0.938926 | 2.993626e-99 | -8.615850e-47 |
| Msa0088690 | Msa0631980 | 0.817362 | 3.429456e-52 | -8.615850e-47 |
| Msa0088690 | Msa1444740 | 0.803554 | 3.298699e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088690 | MtrunA17_Chr1g0206151 | 98.095 | 210 | 4 | 0 | 1 | 210 | 1 | 210 | 2.30e-151 | 418 |
| Msa0088690 | MtrunA17_Chr5g0394061 | 50.000 | 216 | 85 | 9 | 6 | 206 | 1 | 208 | 4.91e-54 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088690 | AT4G21215.2 | 42.529 | 174 | 78 | 9 | 51 | 206 | 23 | 192 | 2.30e-25 | 98.6 |
| Msa0088690 | AT4G21215.1 | 41.379 | 174 | 78 | 10 | 51 | 206 | 23 | 190 | 6.96e-22 | 89.4 |
Find 75 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACAGAAATTTCGTCTTTA+AGG | 0.095616 | 1_2:+69778607 | None:intergenic |
| TCAGAATCAGTTACCATTTC+TGG | 0.116971 | 1_2:-69775270 | Msa0088690:three_prime_UTR |
| TTTCTTTGGTGTGTTATATT+AGG | 0.194196 | 1_2:-69775188 | Msa0088690:three_prime_UTR |
| TACCGCATAAGATGAGATTT+TGG | 0.242665 | 1_2:-69775368 | Msa0088690:three_prime_UTR |
| TTCTTCTTCTTATGAGGCTT+TGG | 0.277408 | 1_2:-69778201 | Msa0088690:CDS |
| CACTTTCATAGAGGAAATAA+AGG | 0.294942 | 1_2:+69778372 | None:intergenic |
| TCACTTGTATCATTATATTC+TGG | 0.332559 | 1_2:-69775096 | Msa0088690:three_prime_UTR |
| AGATAGCTTTGTGATTGATA+TGG | 0.346001 | 1_2:-69778096 | Msa0088690:CDS |
| TCTTACCGTGGTTCTTGAAT+TGG | 0.346530 | 1_2:+69778034 | None:intergenic |
| TTTGGTTTCTTCTTCTTATG+AGG | 0.360374 | 1_2:-69778207 | Msa0088690:CDS |
| TGAACTGTAGCTTCTCTGTT+AGG | 0.382808 | 1_2:-69775863 | Msa0088690:intron |
| ATTGATGATGTCTTTGTTGA+TGG | 0.392741 | 1_2:+69778058 | None:intergenic |
| CTTAGTATCAGCAAGCATAA+TGG | 0.414607 | 1_2:-69775433 | Msa0088690:CDS |
| ATAACACGGAGAAGTAGTTT+TGG | 0.422585 | 1_2:-69775713 | Msa0088690:CDS |
| GCCTCTTGTATCTCCAGAAA+TGG | 0.422776 | 1_2:+69775257 | None:intergenic |
| GAATCAGAACAGATGAAGAT+AGG | 0.422813 | 1_2:-69778179 | Msa0088690:CDS |
| GACATAGATAGTGGAGTTGG+AGG | 0.447412 | 1_2:-69775166 | Msa0088690:three_prime_UTR |
| GTCAAAAGTTGCGTATTGAA+TGG | 0.448696 | 1_2:+69778445 | None:intergenic |
| TAGGACATAGATAGTGGAGT+TGG | 0.468092 | 1_2:-69775169 | Msa0088690:three_prime_UTR |
| CCTTTCGGAGAACATGTAGT+AGG | 0.468709 | 1_2:+69776721 | None:intergenic |
| AAGTGAAGATAATAAAGAAA+AGG | 0.477462 | 1_2:-69775010 | Msa0088690:three_prime_UTR |
| AGTTGCAGCGGAGTCTATCT+AGG | 0.480621 | 1_2:-69776813 | Msa0088690:CDS |
| TAAAGAAAAGGAGAGGAGAA+AGG | 0.491721 | 1_2:-69774998 | Msa0088690:three_prime_UTR |
| ATTAAGATTCTTACCAACTC+AGG | 0.492775 | 1_2:+69778331 | None:intergenic |
| TATTTCCTCTATGAAAGTGA+TGG | 0.495406 | 1_2:-69778368 | Msa0088690:exon |
| AATGATGATGGAAGTGGAAG+TGG | 0.497490 | 1_2:+69778733 | None:intergenic |
| GAAAATAATGATGATGGAAG+TGG | 0.500742 | 1_2:+69778727 | None:intergenic |
| TCAAAAGTTGCGTATTGAAT+GGG | 0.502636 | 1_2:+69778446 | None:intergenic |
| GATAGGTTCACAGAGAATCT+TGG | 0.506776 | 1_2:-69778162 | Msa0088690:CDS |
| TTATATTAGGACATAGATAG+TGG | 0.508507 | 1_2:-69775175 | Msa0088690:three_prime_UTR |
| GATACAAGAGGCAAATACTT+TGG | 0.509461 | 1_2:-69775246 | Msa0088690:three_prime_UTR |
| ACTTGCTCAAATTCCTGAGT+TGG | 0.513985 | 1_2:-69778344 | Msa0088690:intron |
| TAGAAGACAGAGGAAAGAAC+GGG | 0.514815 | 1_2:+69778673 | None:intergenic |
| AATTTCTGTGTTATGTCTCA+CGG | 0.517533 | 1_2:-69778595 | Msa0088690:five_prime_UTR |
| ATTTGATGATGTACTTGTTG+TGG | 0.518420 | 1_2:+69775788 | None:intergenic |
| GAGCAAGTCAACGGTGGTAC+CGG | 0.521472 | 1_2:-69775837 | Msa0088690:CDS |
| AAAGAACGGGTAAAAGAAGT+TGG | 0.522934 | 1_2:+69778686 | None:intergenic |
| ACTTTCATAGAGGAAATAAA+GGG | 0.530134 | 1_2:+69778373 | None:intergenic |
| TGTGATGAAAATAATGATGA+TGG | 0.530364 | 1_2:+69778721 | None:intergenic |
| ATTTCTGTGTTATGTCTCAC+GGG | 0.544014 | 1_2:-69778594 | Msa0088690:intron |
| CAAGTCAACGGTGGTACCGG+TGG | 0.544727 | 1_2:-69775834 | Msa0088690:CDS |
| TGATTCTGACATAAAGTTGG+TGG | 0.553291 | 1_2:+69775284 | None:intergenic |
| AAGTTCCATCACTTTCATAG+AGG | 0.561165 | 1_2:+69778363 | None:intergenic |
| AAGTCAACGGTGGTACCGGT+GGG | 0.567710 | 1_2:-69775833 | Msa0088690:CDS |
| AAGATAATAAAGAAAAGGAG+AGG | 0.568001 | 1_2:-69775005 | Msa0088690:three_prime_UTR |
| CTAGGAAAGGATCCCAGCGT+GGG | 0.587709 | 1_2:-69776795 | Msa0088690:CDS |
| AACTGATTCTGACATAAAGT+TGG | 0.596741 | 1_2:+69775281 | None:intergenic |
| GTAGGTAGCTCTCATAGTCA+TGG | 0.598179 | 1_2:+69774951 | None:intergenic |
| TCATCTTATGCGGTATAAGT+CGG | 0.599570 | 1_2:+69775376 | None:intergenic |
| GTAGAAGACAGAGGAAAGAA+CGG | 0.600708 | 1_2:+69778672 | None:intergenic |
| CTTTCGGAGAACATGTAGTA+GGG | 0.607457 | 1_2:+69776722 | None:intergenic |
| ACCATTTCTGGAGATACAAG+AGG | 0.610878 | 1_2:-69775258 | Msa0088690:three_prime_UTR |
| TAAACGATTTATAGTTGCAG+CGG | 0.611666 | 1_2:-69776825 | Msa0088690:intron |
| CAGCGGAGTCTATCTAGGAA+AGG | 0.612477 | 1_2:-69776808 | Msa0088690:CDS |
| GAACGGGTAAAAGAAGTTGG+TGG | 0.619369 | 1_2:+69778689 | None:intergenic |
| TGGATTTGTTGAATTCTGTG+TGG | 0.627718 | 1_2:+69775808 | None:intergenic |
| CAATGTCACACTTCAAGACA+AGG | 0.628034 | 1_2:-69776752 | Msa0088690:CDS |
| AGTGAGGTATATAAATCCTA+CGG | 0.630190 | 1_2:+69775114 | None:intergenic |
| GAATTCTGTGTGGACCCCAC+CGG | 0.630870 | 1_2:+69775818 | None:intergenic |
| AAGCATAATGGAGTTGAACA+TGG | 0.631540 | 1_2:-69775421 | Msa0088690:CDS |
| TTTATGCACCGTGATAGAGG+GGG | 0.635330 | 1_2:-69775219 | Msa0088690:three_prime_UTR |
| GTTAGGATCGAGCAAGTCAA+CGG | 0.638158 | 1_2:-69775846 | Msa0088690:CDS |
| TAGGAAAGGATCCCAGCGTG+GGG | 0.640099 | 1_2:-69776794 | Msa0088690:CDS |
| TCTAGGAAAGGATCCCAGCG+TGG | 0.641016 | 1_2:-69776796 | Msa0088690:CDS |
| AGTCAACGGTGGTACCGGTG+GGG | 0.643482 | 1_2:-69775832 | Msa0088690:CDS |
| TGCCAAAATCTCATCTTATG+CGG | 0.644341 | 1_2:+69775366 | None:intergenic |
| CAGAAAACAAAAGTATAACA+CGG | 0.658180 | 1_2:-69775727 | Msa0088690:CDS |
| AGAATATAATGATACAAGTG+AGG | 0.662698 | 1_2:+69775098 | None:intergenic |
| CCTACTACATGTTCTCCGAA+AGG | 0.663390 | 1_2:-69776721 | Msa0088690:intron |
| TTATGCACCGTGATAGAGGG+GGG | 0.663865 | 1_2:-69775218 | Msa0088690:three_prime_UTR |
| GCAAAGTTTGTAGAAGACAG+AGG | 0.666959 | 1_2:+69778663 | None:intergenic |
| CAATGCCAATTCAAGAACCA+CGG | 0.685404 | 1_2:-69778039 | Msa0088690:intron |
| AGGAAAGGATCCCAGCGTGG+GGG | 0.705657 | 1_2:-69776793 | Msa0088690:CDS |
| ATGTGACAGAAAGTGTGAAG+AGG | 0.709402 | 1_2:-69775344 | Msa0088690:three_prime_UTR |
| AGGATCGAGCAAGTCAACGG+TGG | 0.738297 | 1_2:-69775843 | Msa0088690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTTATTTATTTA+AGG | - | chr1_2:69776824-69776843 | Msa0088690:intron | 0.0% |
| !!! | ATCTATATTTTAACATAATA+TGG | - | chr1_2:69775966-69775985 | Msa0088690:intron | 10.0% |
| !! | TTACTATTATTAGAATTTAA+TGG | - | chr1_2:69776238-69776257 | Msa0088690:intron | 10.0% |
| !! | CTTAAAAATCATGATTAATT+AGG | + | chr1_2:69775887-69775906 | None:intergenic | 15.0% |
| !!! | ATATTTTAACATAATATGGA+TGG | - | chr1_2:69775970-69775989 | Msa0088690:intron | 15.0% |
| !! | AATTAACAACAACAAAAATT+TGG | + | chr1_2:69776072-69776091 | None:intergenic | 15.0% |
| !!! | AATTTTTGTTGTTGTTAATT+TGG | - | chr1_2:69776072-69776091 | Msa0088690:intron | 15.0% |
| !! | TACACACTAAATATTAAAAA+AGG | - | chr1_2:69776436-69776455 | Msa0088690:intron | 15.0% |
| !! | AATTAATTAAACCGATAATA+AGG | - | chr1_2:69776574-69776593 | Msa0088690:intron | 15.0% |
| !! | AAATATAATTAAAGGGTTAA+AGG | + | chr1_2:69776685-69776704 | None:intergenic | 15.0% |
| !!! | ATTTGTTTCTTTTCATTTAT+TGG | - | chr1_2:69777074-69777093 | Msa0088690:intron | 15.0% |
| !!! | TTTGTTTCTTTTCATTTATT+GGG | - | chr1_2:69777075-69777094 | Msa0088690:intron | 15.0% |
| !! | AAAACACAACAAAATATATT+TGG | + | chr1_2:69777195-69777214 | None:intergenic | 15.0% |
| !! | TTTATATTATCTTATGAATC+TGG | - | chr1_2:69777212-69777231 | Msa0088690:intron | 15.0% |
| !!! | ATATGCAATTAATATGTTTT+TGG | - | chr1_2:69777719-69777738 | Msa0088690:intron | 15.0% |
| !! | AATACTTTGTATATTGAATA+TGG | - | chr1_2:69777822-69777841 | Msa0088690:intron | 15.0% |
| !! | ATACTTTGTATATTGAATAT+GGG | - | chr1_2:69777823-69777842 | Msa0088690:intron | 15.0% |
| !! | TAAGTGTATATTTAGATTAA+CGG | - | chr1_2:69778123-69778142 | Msa0088690:CDS | 15.0% |
| !! | AAAAAATAAAATTGTGTCAA+AGG | + | chr1_2:69778218-69778237 | None:intergenic | 15.0% |
| !!! | ACAATTTTATTTTTTGAAAC+AGG | - | chr1_2:69778223-69778242 | Msa0088690:intron | 15.0% |
| !! | TTACAAAAATGGAAAAAAAA+AGG | + | chr1_2:69778679-69778698 | None:intergenic | 15.0% |
| !!! | CACTTTAAAATTTACAAAAA+TGG | + | chr1_2:69778690-69778709 | None:intergenic | 15.0% |
| !!! | TGAATTTTCAATTTTCATTC+AGG | - | chr1_2:69775232-69775251 | Msa0088690:three_prime_UTR | 20.0% |
| !! | ATATATAAGAGAAAAAAGTG+TGG | + | chr1_2:69775322-69775341 | None:intergenic | 20.0% |
| !! | TTAAAATCACAGTTATAAAG+TGG | + | chr1_2:69776300-69776319 | None:intergenic | 20.0% |
| !! | GATAATGTTTACCTTATTAT+CGG | + | chr1_2:69776588-69776607 | None:intergenic | 20.0% |
| !!! | CTAAACTATAGTCTTAATAT+TGG | + | chr1_2:69777482-69777501 | None:intergenic | 20.0% |
| !! | CAATATTAAGACTATAGTTT+AGG | - | chr1_2:69777480-69777499 | Msa0088690:intron | 20.0% |
| !! | GAAGAGGAAAAAATTATATA+AGG | - | chr1_2:69778387-69778406 | Msa0088690:five_prime_UTR | 20.0% |
| !! | AAGTGAAGATAATAAAGAAA+AGG | - | chr1_2:69778705-69778724 | Msa0088690:five_prime_UTR | 20.0% |
| ! | TGTGATGAAAATAATGATGA+TGG | + | chr1_2:69774997-69775016 | None:intergenic | 25.0% |
| !!! | CTTTTTCTTTTGGTTTTTGT+TGG | - | chr1_2:69775146-69775165 | Msa0088690:three_prime_UTR | 25.0% |
| ! | ACTTTCATAGAGGAAATAAA+GGG | + | chr1_2:69775345-69775364 | None:intergenic | 25.0% |
| ! | TTCCATTGAATTTGAATTCT+GGG | - | chr1_2:69775424-69775443 | Msa0088690:CDS | 25.0% |
| !!! | TGTGTTTTTGTGTTTTTGAT+AGG | - | chr1_2:69775484-69775503 | Msa0088690:intron | 25.0% |
| !!! | TTTGTGTTTTTGATAGGATT+TGG | - | chr1_2:69775490-69775509 | Msa0088690:intron | 25.0% |
| !!! | TAGTAAGAGTTGTGTTATTT+TGG | + | chr1_2:69776224-69776243 | None:intergenic | 25.0% |
| !! | TCTTTTGTACCAAAAAATGT+TGG | - | chr1_2:69776342-69776361 | Msa0088690:intron | 25.0% |
| !!! | TAAGAGAATCCAACATTTTT+TGG | + | chr1_2:69776354-69776373 | None:intergenic | 25.0% |
| ! | AGGTCATAGTAAAAAAAAGT+TGG | + | chr1_2:69776402-69776421 | None:intergenic | 25.0% |
| !!! | TGTGTAAGTTTTGTTGATAT+AGG | + | chr1_2:69776422-69776441 | None:intergenic | 25.0% |
| ! | TATTAAAAAAGGAAGAGTTG+TGG | - | chr1_2:69776447-69776466 | Msa0088690:intron | 25.0% |
| !!! | AACTTTTGTTTAAACCTTTG+CGG | - | chr1_2:69776608-69776627 | Msa0088690:intron | 25.0% |
| ! | AATTAAAGGGTTAAAGGAAA+AGG | + | chr1_2:69776679-69776698 | None:intergenic | 25.0% |
| ! | CACACACAAAGTTAATTAAT+TGG | + | chr1_2:69776742-69776761 | None:intergenic | 25.0% |
| !! | TCTTAAGTTGTTCTTTCTTT+CGG | - | chr1_2:69776789-69776808 | Msa0088690:CDS | 25.0% |
| ! | CACTAGTAACTAAATTCAAA+TGG | - | chr1_2:69777362-69777381 | Msa0088690:intron | 25.0% |
| ! | TAAACCTCTATATCTTTGTT+GGG | + | chr1_2:69777529-69777548 | None:intergenic | 25.0% |
| ! | TTAAACCTCTATATCTTTGT+TGG | + | chr1_2:69777530-69777549 | None:intergenic | 25.0% |
| ! | ATTAGTTAAGGTGAAAAATC+AGG | - | chr1_2:69777619-69777638 | Msa0088690:intron | 25.0% |
| ! | AATGTCCAAATTTCTGATAA+TGG | + | chr1_2:69777775-69777794 | None:intergenic | 25.0% |
| !!! | TATACTTTTGTTTTCTGTGT+TGG | + | chr1_2:69777985-69778004 | None:intergenic | 25.0% |
| !! | CAGAAAACAAAAGTATAACA+CGG | - | chr1_2:69777988-69778007 | Msa0088690:intron | 25.0% |
| !!! | ACACAAGAAGAACTTTTTTA+GGG | + | chr1_2:69778052-69778071 | None:intergenic | 25.0% |
| !!! | AACACAAGAAGAACTTTTTT+AGG | + | chr1_2:69778053-69778072 | None:intergenic | 25.0% |
| !! | TTTCTTTGGTGTGTTATATT+AGG | - | chr1_2:69778527-69778546 | Msa0088690:intron | 25.0% |
| ! | TTATATTAGGACATAGATAG+TGG | - | chr1_2:69778540-69778559 | Msa0088690:intron | 25.0% |
| ! | AGAATATAATGATACAAGTG+AGG | + | chr1_2:69778620-69778639 | None:intergenic | 25.0% |
| ! | TCACTTGTATCATTATATTC+TGG | - | chr1_2:69778619-69778638 | Msa0088690:five_prime_UTR | 25.0% |
| ! | AAGATAATAAAGAAAAGGAG+AGG | - | chr1_2:69778710-69778729 | Msa0088690:five_prime_UTR | 25.0% |
| !! | GAAAATAATGATGATGGAAG+TGG | + | chr1_2:69774991-69775010 | None:intergenic | 30.0% |
| ACACAGAAATTTCGTCTTTA+AGG | + | chr1_2:69775111-69775130 | None:intergenic | 30.0% | |
| AATTTCTGTGTTATGTCTCA+CGG | - | chr1_2:69775120-69775139 | Msa0088690:three_prime_UTR | 30.0% | |
| TCAAAAGTTGCGTATTGAAT+GGG | + | chr1_2:69775272-69775291 | None:intergenic | 30.0% | |
| CACTTTCATAGAGGAAATAA+AGG | + | chr1_2:69775346-69775365 | None:intergenic | 30.0% | |
| TATTTCCTCTATGAAAGTGA+TGG | - | chr1_2:69775347-69775366 | Msa0088690:three_prime_UTR | 30.0% | |
| ATTAAGATTCTTACCAACTC+AGG | + | chr1_2:69775387-69775406 | None:intergenic | 30.0% | |
| GTTCCATTGAATTTGAATTC+TGG | - | chr1_2:69775423-69775442 | Msa0088690:CDS | 30.0% | |
| ! | TTTGGTTTCTTCTTCTTATG+AGG | - | chr1_2:69775508-69775527 | Msa0088690:intron | 30.0% |
| !! | AGATAGCTTTGTGATTGATA+TGG | - | chr1_2:69775619-69775638 | Msa0088690:intron | 30.0% |
| !! | ATTGATGATGTCTTTGTTGA+TGG | + | chr1_2:69775660-69775679 | None:intergenic | 30.0% |
| AAGAATAAAAGTTCTTACCG+TGG | + | chr1_2:69775696-69775715 | None:intergenic | 30.0% | |
| AGAAAGACATTCGATTCTAA+TGG | + | chr1_2:69776634-69776653 | None:intergenic | 30.0% | |
| AACAACTTAAGAATGCAACA+TGG | + | chr1_2:69776781-69776800 | None:intergenic | 30.0% | |
| TAAACGATTTATAGTTGCAG+CGG | - | chr1_2:69776890-69776909 | Msa0088690:intron | 30.0% | |
| TTAGAAGAAAACAATGAACG+AGG | + | chr1_2:69777048-69777067 | None:intergenic | 30.0% | |
| ! | TCTTTTCATTTATTGGGACT+TGG | - | chr1_2:69777081-69777100 | Msa0088690:intron | 30.0% |
| ACATCAAACATGATTACACA+TGG | - | chr1_2:69777555-69777574 | Msa0088690:intron | 30.0% | |
| ! | TTAGTGAAATTTGTTTGTCC+TGG | - | chr1_2:69777580-69777599 | Msa0088690:intron | 30.0% |
| ! | GTTTGACAATTTTACGTAGT+AGG | + | chr1_2:69777648-69777667 | None:intergenic | 30.0% |
| !! | TTTTTGGTACACCATACTTT+GGG | - | chr1_2:69777735-69777754 | Msa0088690:intron | 30.0% |
| ACTGTCCATTATCAGAAATT+TGG | - | chr1_2:69777767-69777786 | Msa0088690:intron | 30.0% | |
| !! | ATTTGATGATGTACTTGTTG+TGG | + | chr1_2:69777930-69777949 | None:intergenic | 30.0% |
| AAGATTTGAGTCTTACAATG+TGG | + | chr1_2:69778078-69778097 | None:intergenic | 30.0% | |
| ! | AACTGATTCTGACATAAAGT+TGG | + | chr1_2:69778437-69778456 | None:intergenic | 30.0% |
| !!! | TTTTTACTTTTTCTCTCCGT+AGG | - | chr1_2:69778585-69778604 | Msa0088690:intron | 30.0% |
| AGTGAGGTATATAAATCCTA+CGG | + | chr1_2:69778604-69778623 | None:intergenic | 30.0% | |
| AAAAAGGTTCAAATGCTAGT+AGG | + | chr1_2:69778663-69778682 | None:intergenic | 30.0% | |
| AAAGAACGGGTAAAAGAAGT+TGG | + | chr1_2:69775032-69775051 | None:intergenic | 35.0% | |
| !!! | TCGTCTTTAAGGAGTGTTTT+TGG | + | chr1_2:69775100-69775119 | None:intergenic | 35.0% |
| ATTTCTGTGTTATGTCTCAC+GGG | - | chr1_2:69775121-69775140 | Msa0088690:three_prime_UTR | 35.0% | |
| GTCAAAAGTTGCGTATTGAA+TGG | + | chr1_2:69775273-69775292 | None:intergenic | 35.0% | |
| AAGTTCCATCACTTTCATAG+AGG | + | chr1_2:69775355-69775374 | None:intergenic | 35.0% | |
| GACCCAGAATTCAAATTCAA+TGG | + | chr1_2:69775429-69775448 | None:intergenic | 35.0% | |
| TTCTTCTTCTTATGAGGCTT+TGG | - | chr1_2:69775514-69775533 | Msa0088690:intron | 35.0% | |
| GAATCAGAACAGATGAAGAT+AGG | - | chr1_2:69775536-69775555 | Msa0088690:intron | 35.0% | |
| TCTGCTAATATCATCTGAGT+CGG | - | chr1_2:69776502-69776521 | Msa0088690:intron | 35.0% | |
| ACTTAAGAATGCAACATGGT+GGG | + | chr1_2:69776777-69776796 | None:intergenic | 35.0% | |
| AACTTAAGAATGCAACATGG+TGG | + | chr1_2:69776778-69776797 | None:intergenic | 35.0% | |
| AAGAAAACAATGAACGAGGT+CGG | + | chr1_2:69777044-69777063 | None:intergenic | 35.0% | |
| !!! | CTTGTTTTTGATGTGACACA+TGG | - | chr1_2:69777117-69777136 | Msa0088690:intron | 35.0% |
| CATGAAAACAAATCCTGAGT+TGG | + | chr1_2:69777251-69777270 | None:intergenic | 35.0% | |
| CATATACTGTTTGACCGTTA+TGG | - | chr1_2:69777327-69777346 | Msa0088690:intron | 35.0% | |
| ATATGAGCCATATGAATCAG+TGG | + | chr1_2:69777437-69777456 | None:intergenic | 35.0% | |
| TCTATATCTTTGTTGGGTCT+GGG | + | chr1_2:69777523-69777542 | None:intergenic | 35.0% | |
| TAACTAATCTTCAACCACCA+GGG | + | chr1_2:69777607-69777626 | None:intergenic | 35.0% | |
| TTAACTAATCTTCAACCACC+AGG | + | chr1_2:69777608-69777627 | None:intergenic | 35.0% | |
| ! | TGGTGGTTGAAGATTAGTTA+AGG | - | chr1_2:69777607-69777626 | Msa0088690:intron | 35.0% |
| !!! | GTTTTTGGTACACCATACTT+TGG | - | chr1_2:69777734-69777753 | Msa0088690:intron | 35.0% |
| ! | TTTTGGTACACCATACTTTG+GGG | - | chr1_2:69777736-69777755 | Msa0088690:intron | 35.0% |
| !! | TGGATTTGTTGAATTCTGTG+TGG | + | chr1_2:69777910-69777929 | None:intergenic | 35.0% |
| ! | ATAACACGGAGAAGTAGTTT+TGG | - | chr1_2:69778002-69778021 | Msa0088690:intron | 35.0% |
| !!! | TCAGTGCATGTTTTGATTGA+CGG | + | chr1_2:69778184-69778203 | None:intergenic | 35.0% |
| !!! | TTTTGAAACAGGTCAAGTGT+AGG | - | chr1_2:69778234-69778253 | Msa0088690:intron | 35.0% |
| CTTAGTATCAGCAAGCATAA+TGG | - | chr1_2:69778282-69778301 | Msa0088690:intron | 35.0% | |
| ! | AAGCATAATGGAGTTGAACA+TGG | - | chr1_2:69778294-69778313 | Msa0088690:intron | 35.0% |
| TCATCTTATGCGGTATAAGT+CGG | + | chr1_2:69778342-69778361 | None:intergenic | 35.0% | |
| ! | TACCGCATAAGATGAGATTT+TGG | - | chr1_2:69778347-69778366 | Msa0088690:CDS | 35.0% |
| TGCCAAAATCTCATCTTATG+CGG | + | chr1_2:69778352-69778371 | None:intergenic | 35.0% | |
| TGATTCTGACATAAAGTTGG+TGG | + | chr1_2:69778434-69778453 | None:intergenic | 35.0% | |
| TCAGAATCAGTTACCATTTC+TGG | - | chr1_2:69778445-69778464 | Msa0088690:five_prime_UTR | 35.0% | |
| GATACAAGAGGCAAATACTT+TGG | - | chr1_2:69778469-69778488 | Msa0088690:intron | 35.0% | |
| ! | ATTTTATGCACCGTGATAGA+GGG | - | chr1_2:69778494-69778513 | Msa0088690:intron | 35.0% |
| TAAAGAAAAGGAGAGGAGAA+AGG | - | chr1_2:69778717-69778736 | Msa0088690:five_prime_UTR | 35.0% | |
| !! | AATGATGATGGAAGTGGAAG+TGG | + | chr1_2:69774985-69775004 | None:intergenic | 40.0% |
| TAGAAGACAGAGGAAAGAAC+GGG | + | chr1_2:69775045-69775064 | None:intergenic | 40.0% | |
| GTAGAAGACAGAGGAAAGAA+CGG | + | chr1_2:69775046-69775065 | None:intergenic | 40.0% | |
| GCAAAGTTTGTAGAAGACAG+AGG | + | chr1_2:69775055-69775074 | None:intergenic | 40.0% | |
| !!! | CTCACGGGTACTTTTTCTTT+TGG | - | chr1_2:69775136-69775155 | Msa0088690:three_prime_UTR | 40.0% |
| ACTTGCTCAAATTCCTGAGT+TGG | - | chr1_2:69775371-69775390 | Msa0088690:three_prime_UTR | 40.0% | |
| GATAGGTTCACAGAGAATCT+TGG | - | chr1_2:69775553-69775572 | Msa0088690:intron | 40.0% | |
| CAATGCCAATTCAAGAACCA+CGG | - | chr1_2:69775676-69775695 | Msa0088690:CDS | 40.0% | |
| TCTTACCGTGGTTCTTGAAT+TGG | + | chr1_2:69775684-69775703 | None:intergenic | 40.0% | |
| !! | ACAGACTCTGTTTTGTTCGT+GGG | + | chr1_2:69775784-69775803 | None:intergenic | 40.0% |
| CTGCTAATATCATCTGAGTC+GGG | - | chr1_2:69776503-69776522 | Msa0088690:intron | 40.0% | |
| CAATGTCACACTTCAAGACA+AGG | - | chr1_2:69776963-69776982 | Msa0088690:intron | 40.0% | |
| CTTTCGGAGAACATGTAGTA+GGG | + | chr1_2:69776996-69777015 | None:intergenic | 40.0% | |
| ! | GTAACACTTTGGAAGGGAAA+TGG | + | chr1_2:69777022-69777041 | None:intergenic | 40.0% |
| ! | TCCTGAGTTGGCAAATCAAT+CGG | + | chr1_2:69777239-69777258 | None:intergenic | 40.0% |
| TGTTCACCAATGTGCCATAA+CGG | + | chr1_2:69777344-69777363 | None:intergenic | 40.0% | |
| !! | TTGGTGTCCACTGATTCATA+TGG | - | chr1_2:69777427-69777446 | Msa0088690:intron | 40.0% |
| CTCTATATCTTTGTTGGGTC+TGG | + | chr1_2:69777524-69777543 | None:intergenic | 40.0% | |
| CAGACCCAACAAAGATATAG+AGG | - | chr1_2:69777522-69777541 | Msa0088690:intron | 40.0% | |
| !! | CTGATAATGGACAGTACATG+TGG | + | chr1_2:69777762-69777781 | None:intergenic | 40.0% |
| TGAACTGTAGCTTCTCTGTT+AGG | - | chr1_2:69777852-69777871 | Msa0088690:intron | 40.0% | |
| !! | GTTTTGGACGATCTTCTTCA+TGG | - | chr1_2:69778018-69778037 | Msa0088690:intron | 40.0% |
| ! | ATGTGACAGAAAGTGTGAAG+AGG | - | chr1_2:69778371-69778390 | Msa0088690:exon | 40.0% |
| ! | ACCATTTCTGGAGATACAAG+AGG | - | chr1_2:69778457-69778476 | Msa0088690:five_prime_UTR | 40.0% |
| ! | GATTTTATGCACCGTGATAG+AGG | - | chr1_2:69778493-69778512 | Msa0088690:intron | 40.0% |
| ! | TTTTATGCACCGTGATAGAG+GGG | - | chr1_2:69778495-69778514 | Msa0088690:intron | 40.0% |
| !! | TAGGACATAGATAGTGGAGT+TGG | - | chr1_2:69778546-69778565 | Msa0088690:intron | 40.0% |
| GAACGGGTAAAAGAAGTTGG+TGG | + | chr1_2:69775029-69775048 | None:intergenic | 45.0% | |
| !! | ACTCTGTTTTGTTCGTGGGA+TGG | + | chr1_2:69775780-69775799 | None:intergenic | 45.0% |
| !! | CACAGACTCTGTTTTGTTCG+TGG | + | chr1_2:69775785-69775804 | None:intergenic | 45.0% |
| TTCGATTCTAATGGCCGCAA+AGG | + | chr1_2:69776625-69776644 | None:intergenic | 45.0% | |
| CCTTTCGGAGAACATGTAGT+AGG | + | chr1_2:69776997-69777016 | None:intergenic | 45.0% | |
| CCTACTACATGTTCTCCGAA+AGG | - | chr1_2:69776994-69777013 | Msa0088690:intron | 45.0% | |
| GGAAGGGAAATGGTACCTTT+CGG | + | chr1_2:69777012-69777031 | None:intergenic | 45.0% | |
| ! | AGGTCGGTAACACTTTGGAA+GGG | + | chr1_2:69777028-69777047 | None:intergenic | 45.0% |
| !! | ACCGATTGATTTGCCAACTC+AGG | - | chr1_2:69777235-69777254 | Msa0088690:intron | 45.0% |
| GTTTGACCGTTATGGCACAT+TGG | - | chr1_2:69777335-69777354 | Msa0088690:intron | 45.0% | |
| TACTTGTGTCAGGCCAAAGT+TGG | - | chr1_2:69777408-69777427 | Msa0088690:intron | 45.0% | |
| GAATCAGTGGACACCAACTT+TGG | + | chr1_2:69777424-69777443 | None:intergenic | 45.0% | |
| ! | AATTTGTTTGTCCTGGTCCC+TGG | - | chr1_2:69777587-69777606 | Msa0088690:intron | 45.0% |
| GTTAGGATCGAGCAAGTCAA+CGG | - | chr1_2:69777869-69777888 | Msa0088690:intron | 45.0% | |
| GCCTCTTGTATCTCCAGAAA+TGG | + | chr1_2:69778461-69778480 | None:intergenic | 45.0% | |
| TTTATGCACCGTGATAGAGG+GGG | - | chr1_2:69778496-69778515 | Msa0088690:intron | 45.0% | |
| AGGGGGGAGGAATATTTCTT+TGG | - | chr1_2:69778513-69778532 | Msa0088690:intron | 45.0% | |
| !! | GACATAGATAGTGGAGTTGG+AGG | - | chr1_2:69778549-69778568 | Msa0088690:intron | 45.0% |
| GTAGGTAGCTCTCATAGTCA+TGG | + | chr1_2:69778767-69778786 | None:intergenic | 45.0% | |
| !!! | TTTTTCATTTTTATATTATT+TGG | - | chr1_2:69775753-69775772 | Msa0088690:CDS | 5.0% |
| !! | ATATAAATGAATATAAATTA+TGG | - | chr1_2:69775908-69775927 | Msa0088690:intron | 5.0% |
| !! | TTAAAATATAGATTATATTT+AGG | + | chr1_2:69775959-69775978 | None:intergenic | 5.0% |
| !!! | TTTCATTTTATTTATAATAA+AGG | + | chr1_2:69776555-69776574 | None:intergenic | 5.0% |
| !! | ATTCAAAAAATATAATTAAA+GGG | + | chr1_2:69776692-69776711 | None:intergenic | 5.0% |
| !! | AATTCAAAAAATATAATTAA+AGG | + | chr1_2:69776693-69776712 | None:intergenic | 5.0% |
| AGTTGCAGCGGAGTCTATCT+AGG | - | chr1_2:69776902-69776921 | Msa0088690:intron | 50.0% | |
| CAGCGGAGTCTATCTAGGAA+AGG | - | chr1_2:69776907-69776926 | Msa0088690:intron | 50.0% | |
| ATTTCTATCACCCCCACGCT+GGG | + | chr1_2:69776935-69776954 | None:intergenic | 50.0% | |
| GGGGGTGATAGAAATGTGAG+TGG | - | chr1_2:69776940-69776959 | Msa0088690:intron | 50.0% | |
| GAGGTCGGTAACACTTTGGA+AGG | + | chr1_2:69777029-69777048 | None:intergenic | 50.0% | |
| GAACGAGGTCGGTAACACTT+TGG | + | chr1_2:69777033-69777052 | None:intergenic | 50.0% | |
| CTTTGGCCTGACACAAGTAC+AGG | + | chr1_2:69777407-69777426 | None:intergenic | 50.0% | |
| GTACATGTGGCCCCAAAGTA+TGG | + | chr1_2:69777749-69777768 | None:intergenic | 50.0% | |
| TTATGCACCGTGATAGAGGG+GGG | - | chr1_2:69778497-69778516 | Msa0088690:intron | 50.0% | |
| TATTCCTCCCCCCTCTATCA+CGG | + | chr1_2:69778507-69778526 | None:intergenic | 50.0% | |
| TCTAGGAAAGGATCCCAGCG+TGG | - | chr1_2:69776919-69776938 | Msa0088690:intron | 55.0% | |
| CTAGGAAAGGATCCCAGCGT+GGG | - | chr1_2:69776920-69776939 | Msa0088690:intron | 55.0% | |
| TAGGAAAGGATCCCAGCGTG+GGG | - | chr1_2:69776921-69776940 | Msa0088690:intron | 55.0% | |
| CATTTCTATCACCCCCACGC+TGG | + | chr1_2:69776936-69776955 | None:intergenic | 55.0% | |
| CGCCAACCTGTACTTGTGTC+AGG | - | chr1_2:69777398-69777417 | Msa0088690:intron | 55.0% | |
| GGCCTGACACAAGTACAGGT+TGG | + | chr1_2:69777403-69777422 | None:intergenic | 55.0% | |
| TTGTTTGTCCTGGTCCCTGG+TGG | - | chr1_2:69777590-69777609 | Msa0088690:intron | 55.0% | |
| ATCTTCAACCACCAGGGACC+AGG | + | chr1_2:69777601-69777620 | None:intergenic | 55.0% | |
| AGGATCGAGCAAGTCAACGG+TGG | - | chr1_2:69777872-69777891 | Msa0088690:intron | 55.0% | |
| GAGCAAGTCAACGGTGGTAC+CGG | - | chr1_2:69777878-69777897 | Msa0088690:intron | 55.0% | |
| !! | AAGTCAACGGTGGTACCGGT+GGG | - | chr1_2:69777882-69777901 | Msa0088690:intron | 55.0% |
| GAATTCTGTGTGGACCCCAC+CGG | + | chr1_2:69777900-69777919 | None:intergenic | 55.0% | |
| AGGAAAGGATCCCAGCGTGG+GGG | - | chr1_2:69776922-69776941 | Msa0088690:intron | 60.0% | |
| ! | CAAGTCAACGGTGGTACCGG+TGG | - | chr1_2:69777881-69777900 | Msa0088690:intron | 60.0% |
| !! | AGTCAACGGTGGTACCGGTG+GGG | - | chr1_2:69777883-69777902 | Msa0088690:intron | 60.0% |
| TGCACCGTGATAGAGGGGGG+AGG | - | chr1_2:69778500-69778519 | Msa0088690:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 69774939 | 69778798 | 69774939 | ID=Msa0088690;Name=Msa0088690 |
| chr1_2 | mRNA | 69774939 | 69778798 | 69774939 | ID=Msa0088690-mRNA-1;Parent=Msa0088690;Name=Msa0088690-mRNA-1;_AED=0.17;_eAED=0.17;_QI=307|1|1|1|0.8|0.66|6|466|215 |
| chr1_2 | exon | 69774939 | 69775492 | 69774939 | ID=Msa0088690-mRNA-1:exon:24013;Parent=Msa0088690-mRNA-1 |
| chr1_2 | exon | 69775656 | 69775875 | 69775656 | ID=Msa0088690-mRNA-1:exon:24012;Parent=Msa0088690-mRNA-1 |
| chr1_2 | exon | 69776722 | 69776833 | 69776722 | ID=Msa0088690-mRNA-1:exon:24011;Parent=Msa0088690-mRNA-1 |
| chr1_2 | exon | 69778040 | 69778231 | 69778040 | ID=Msa0088690-mRNA-1:exon:24010;Parent=Msa0088690-mRNA-1 |
| chr1_2 | exon | 69778345 | 69778483 | 69778345 | ID=Msa0088690-mRNA-1:exon:24009;Parent=Msa0088690-mRNA-1 |
| chr1_2 | exon | 69778595 | 69778798 | 69778595 | ID=Msa0088690-mRNA-1:exon:24008;Parent=Msa0088690-mRNA-1 |
| chr1_2 | five_prime_UTR | 69778595 | 69778798 | 69778595 | ID=Msa0088690-mRNA-1:five_prime_utr;Parent=Msa0088690-mRNA-1 |
| chr1_2 | five_prime_UTR | 69778381 | 69778483 | 69778381 | ID=Msa0088690-mRNA-1:five_prime_utr;Parent=Msa0088690-mRNA-1 |
| chr1_2 | CDS | 69778345 | 69778380 | 69778345 | ID=Msa0088690-mRNA-1:cds;Parent=Msa0088690-mRNA-1 |
| chr1_2 | CDS | 69778040 | 69778231 | 69778040 | ID=Msa0088690-mRNA-1:cds;Parent=Msa0088690-mRNA-1 |
| chr1_2 | CDS | 69776722 | 69776833 | 69776722 | ID=Msa0088690-mRNA-1:cds;Parent=Msa0088690-mRNA-1 |
| chr1_2 | CDS | 69775656 | 69775875 | 69775656 | ID=Msa0088690-mRNA-1:cds;Parent=Msa0088690-mRNA-1 |
| chr1_2 | CDS | 69775405 | 69775492 | 69775405 | ID=Msa0088690-mRNA-1:cds;Parent=Msa0088690-mRNA-1 |
| chr1_2 | three_prime_UTR | 69774939 | 69775404 | 69774939 | ID=Msa0088690-mRNA-1:three_prime_utr;Parent=Msa0088690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
