AlfalfaGEDB | Msa0608980

M. sativa cultivar zhongmu-4 / Msa0608980

KEGG: -
GO: -
PFAM: PF01582.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0608980	XP_024638299.1	75.914	1067	212	5	18	1054	3	1054	0.0	1599

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0608980	sp\|V9M398\|RUN1_VITRO	37.861	832	462	15	17	803	24	845	2.39e-159	509

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0043740	Msa0608980	0.817037	4.059526e-52	-8.615850e-47
Msa0090090	Msa0608980	0.829629	4.625132e-55	-8.615850e-47
Msa0090200	Msa0608980	0.801308	9.571410e-49	-8.615850e-47
Msa0137560	Msa0608980	0.828327	9.563733e-55	-8.615850e-47
Msa0137750	Msa0608980	0.817349	3.453274e-52	-8.615850e-47
Msa0296910	Msa0608980	0.810131	1.342259e-50	-8.615850e-47
Msa0335070	Msa0608980	0.818138	2.291575e-52	-8.615850e-47
Msa0490110	Msa0608980	0.842331	2.759983e-58	-8.615850e-47
Msa0551810	Msa0608980	0.826641	2.426565e-54	-8.615850e-47
Msa0578960	Msa0608980	0.818869	1.564881e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0608980	MtrunA17_Chr4g0041441	75.914	1067	212	5	18	1054	3	1054	1599
Msa0608980	MtrunA17_Chr4g0041241	64.049	1057	331	10	20	1051	22	1054	1273
Msa0608980	MtrunA17_Chr4g0041951	62.938	1055	342	13	12	1056	70	1085	1244
Msa0608980	MtrunA17_Chr4g0042011	60.254	1102	373	14	1	1056	1	1083	1238
Msa0608980	MtrunA17_Chr4g0041231	61.833	1069	320	14	20	1051	22	1039	1208
Msa0608980	MtrunA17_Chr2g0299561	57.962	1099	383	18	1	1059	1	1060	1145
Msa0608980	MtrunA17_Chr6g0486481	58.532	1049	394	11	13	1056	13	1025	1143
Msa0608980	MtrunA17_Chr6g0486221	56.222	1101	393	17	9	1056	3	1067	1140
Msa0608980	MtrunA17_Chr4g0041931	58.902	1056	389	17	20	1054	23	1054	1136
Msa0608980	MtrunA17_Chr6g0486311	58.498	1065	383	15	9	1050	2	1030	1135

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0608980	AT5G17680.1	37.241	819	478	16	19	817	17	819	4.56e-159	505
Msa0608980	AT5G17680.1	26.074	326	181	12	629	924	830	1125	2.97e-12	71.6
Msa0608980	AT5G17680.2	37.195	820	478	17	19	817	17	820	5.17e-158	502
Msa0608980	AT5G17680.2	26.074	326	181	12	629	924	831	1126	3.05e-12	71.6
Msa0608980	AT5G41550.1	33.153	926	541	22	11	903	4	884	5.18e-132	427
Msa0608980	AT5G36930.3	34.788	848	482	16	20	807	14	850	1.86e-130	424
Msa0608980	AT5G36930.2	34.788	848	482	16	20	807	17	853	3.57e-130	425
Msa0608980	AT5G36930.4	34.788	848	482	16	20	807	14	850	3.85e-130	425
Msa0608980	AT5G36930.1	34.788	848	482	16	20	807	14	850	3.85e-130	425
Msa0608980	AT5G18350.1	34.386	823	465	12	8	802	5	780	6.18e-129	423

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Find 194 sgRNAs with CRISPR-Local

Find 558 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATGCTTCCTCAACT+TGG	0.498026	4_2:+56375872	Msa0608980:CDS
AAAAGGCGTCGTTGCATTCA+GGG	0.476575	4_2:+56375759	Msa0608980:CDS
AAAGGGCAGAGGTCTGGATT+TGG	0.413584	4_2:+56379545	Msa0608980:CDS
AAAGTAGGCTACGTCGCCTA+CGG	0.551263	4_2:+56376734	Msa0608980:CDS
AACAGGCAGAACACGTCTTC+CGG	0.369801	4_2:-56375938	None:intergenic
AACTGGTTGAATTGATCTTG+AGG	0.517975	4_2:+56377931	Msa0608980:CDS
AACTTGCGCTTCCGAGCTAA+CGG	0.486954	4_2:-56379648	None:intergenic
AAGAGGAACTGCTACTTCTT+TGG	0.284671	4_2:-56375642	None:intergenic
AAGTAGCAGTTCCTCTTCTT+CGG	0.423965	4_2:+56375648	Msa0608980:CDS
AAGTAGGCTACGTCGCCTAC+GGG	0.575163	4_2:+56376735	Msa0608980:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGACATCAAAAAGGAAGTTA+TGG	+	chr4_2:56375988-56376007	Msa0608980:CDS	30.0%
AAAATTATGTTATCTTCGCC+TGG	+	chr4_2:56376263-56376282	Msa0608980:intron	30.0%
TCTCTTCCAAAAGAATTAGT+TGG	+	chr4_2:56376424-56376443	Msa0608980:CDS	30.0%
ACCACTAGCAATTAAAGTAT+TGG	+	chr4_2:56377029-56377048	Msa0608980:CDS	30.0%
ACATCCATGATATCTTTGTT+TGG	-	chr4_2:56377120-56377139	None:intergenic	30.0%
TTTAATGTGTTAGGAAAAGG+AGG	+	chr4_2:56377695-56377714	Msa0608980:intron	30.0%
CATATCTTAACTCGTTAGAA+AGG	-	chr4_2:56377857-56377876	None:intergenic	30.0%
ATCAATTCAACCAGTTGATT+GGG	-	chr4_2:56377927-56377946	None:intergenic	30.0%
CCATATGCAAATTGATCAAA+AGG	-	chr4_2:56378160-56378179	None:intergenic	30.0%
AACCTAAAGTCATATGCTAA+CGG	+	chr4_2:56378234-56378253	Msa0608980:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	56375625	56379713	56375625	ID=Msa0608980;Name=Msa0608980
chr4_2	mRNA	56375625	56379713	56375625	ID=Msa0608980-mRNA-1;Parent=Msa0608980;Name=Msa0608980-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0\|0\|0\|1\|1\|1\|4\|0\|1059
chr4_2	exon	56375625	56376124	56375625	ID=Msa0608980-mRNA-1:exon:14498;Parent=Msa0608980-mRNA-1
chr4_2	exon	56376357	56377455	56376357	ID=Msa0608980-mRNA-1:exon:14499;Parent=Msa0608980-mRNA-1
chr4_2	exon	56377708	56377989	56377708	ID=Msa0608980-mRNA-1:exon:14500;Parent=Msa0608980-mRNA-1
chr4_2	exon	56378415	56379713	56378415	ID=Msa0608980-mRNA-1:exon:14501;Parent=Msa0608980-mRNA-1
chr4_2	CDS	56375625	56376124	56375625	ID=Msa0608980-mRNA-1:cds;Parent=Msa0608980-mRNA-1
chr4_2	CDS	56376357	56377455	56376357	ID=Msa0608980-mRNA-1:cds;Parent=Msa0608980-mRNA-1
chr4_2	CDS	56377708	56377989	56377708	ID=Msa0608980-mRNA-1:cds;Parent=Msa0608980-mRNA-1
chr4_2	CDS	56378415	56379713	56378415	ID=Msa0608980-mRNA-1:cds;Parent=Msa0608980-mRNA-1

Gene Sequence

>Msa0608980

ATGGCTTGCAGCAGCATCCAAAGAAGTAGCAGTTCCTCTTCTTCGGCTACGATGAAGTATGACGTTTTTGTGAGCTTTAGAGGCCAAGACACACGGAACAATTTTGCCAATCATCTTTTTGCTGCCCTTCAAAGAAAAGGCGTCGTTGCATTCAGGGATGATACTAAGCTGAAGAAAGGTGATTCCATAGCACCCGAGCTCCATCATGCAATTGAAGCCTCTCAGGTTTTCCTTGTAGTCTTCTCAAAAAACTATGCTTCCTCAACTTGGTGCTTGGGGGAATTGGAATACATCCTTCACTGCAGTCAAGTTTCCGGAAGACGTGTTCTGCCTGTTTTCTATGATGTTGATCCTTCTGAGGTCAGACATCAAAAAGGAAGTTATGGAGAAGCCCTCGCCAAACACGAAGTAAGATTCCAACATGAATCAGAGATGGTGCAGAGATGGAGGGAAGCACTAACACAAGTCGCCAATCTCTGTGGTTGGGATATGCATCATAAGCCTCAATATGCAGAGATTGAAGAGATTGTTGAAGAGATAATGAATATATTGGGTCACAATTTTTCATCTCTTCCAAAAGAATTAGTTGGAATGAATTCTCCTATAGAAAAAGTAGTAAATCAATTACTTTTGGACTTGGTTGATGACGTTCGGATTGTGGGAATTTGTGGGATGGGTGGAATAGGGAAGACAATCCTTGCTACTGCTTTATATGAACAAATCTCTCGTCAATTTGATGCACGTTGTTTTATTGATGATCTAAGCAAAATATATAGACATGATGGTCCAATTGGTGCACAAAAGCAAATCCTACACCAAACTCTTGGCAAGGAACACTTTCAGATATGCAATCTATATGACACAACTAATTTGATACAAAGTAGGCTACGTCGCCTACGGGCGCTTATAGTTGTTGATAATGTTGATAAAGTTGAACAACTTGATAAATTAGGTGTGAATCGTGAATGGTTAGGCGCGGGGAGTAGAATCATTATAATTTCTAGAGATGAGCATATCTTGAAAGAGTATGGAACTGATGTAGTTTACAAAGTTCCACTCTTGAATGAGACTAACTCCCTTCAACTATTTTGTCAAAAAGCTTTCAAACTTGATCATATTATCAGTAGTTATGAGAAGTTGACAATTGACATACTGAGTTATGCTAATGGTCTACCACTAGCAATTAAAGTATTGGGCTCATTTTTGTTCGGTCGAGACATCGATGAATGGAAAAGTGCATTGGCTAGATTGAAAGACAGTCCAAACAAAGATATCATGGATGTGTTGCGATTAAGTTTTGAAGGGTTGGAGAAATTGGAAAAAGAAATATTTCTCGATATTGCTTGTTTTTTCAATCTGCACGAGAAGGGTTATGTCCAAAACGTTCTAAATCGTCGTGGATTTCATGCTGATATTGGACTAAGAGTTCTAATTGATAAATCTCTTCTAAGCATTAGGGATGAAAATCAAATTCAAATGCATAGTTTGTTAGAAGAGTTGGGCATAAAAATTGACCAAGAAAATTCAAGCACAGAGTCAAGAAAGTGGAGTCGGGTGTGGCTGCACGAACAGCTCCACAATCTTATGTTAGATAATGAGGAAAAGGAGGTCGAAGCCATATGTTTTCTTGGTTATATGGATTTCAACGAAACAAAAATCACGGTCATGGGTGAAGCATTGTCCAAAATGACTCATCTTAGATTGCTCATACTCAATGATGTGATTTTTTCGGGAAACCTCAGCTGCCTTTCTAACGAGTTAAGATATGTAGAGTGTGGTAGCTATCCTTTCAAGTATTTGCCAACAAGTTTTCAGCCCAATCAACTGGTTGAATTGATCTTGAGGGATAACAACATCAAACAACTATGGAAAGACAAGAAGTATTTGCCGAACTTGAAAAGTTTGGATCTAAGACATTCAAAGAATCTAAGAAAGATGCCAAATTTTGGAGAGATGCCGAATCTTGAGAAACTAAATCTTAAAGGTTGTATAAAGCTTGTGCAGATTGATCCATCAATTGGGGTTCTAAGAAAGCTTGTTTTCTTGAAATTGAAAGATTGCAAAAATCTAGTAAGCATACCGAACAACATACTTGGTCTCAGCTCTCTTAAATATCTAAATCTTTCCGGGTGTTCCAAAGTGTTTAACATAGTTGATTTACACTCCTTGTATCAAAAAGTTTTAGCTACTCATTTGCTACCTTCTTTGCTTAGCTTATATTGTTTGAGAGAAGTTGATATTAGTTTTTGTGGTCTAAGCCATCTCCCCGATGCAATTGGATGTCTACGTCAGCTAGAAATATTAAATATACGGGGGAACAATTTTGTGACACTACCTAGCCTGAGAGAGCATTCCAAACTTCTATATTTAAATTTGGAGCATTGCAAGCTTTTGGAAACTTTGCCTCAGCTTCCTCTTTCTACTGATATCGAGCGGGATCATCATACAGGCAAATATTGGTGGAAAACAGGATTGGTCATTTTCAACTGTCTTAAATTGGGTGAGAGTGAATGTTGCAGTAGCATGGCATTTTCATGGTTGACACAATTTATTCAGGCAAGGCAATATTCCTCTACTTTCTCCTATGATGATGAACGATCCTCCACTTTCCTCTATAACGACGATATTAAAATTGTTATTCCTGGAAGTGAAATGCCAATTTGGTTCAACAATCGGAGCGTGGGTGATTCAATAAGAATGAACATATCTCAAATTATGCATGACAGTGACGATAATCTAATTGGCATTGCTTGTTGTGCAGTATTTTCCGTAGCACCTGTTGATCCAACTACGAGATGTTTACCCCAACTTGGTCTAAAGTTTTGTAATAGTAATTTCCCATGGTCTCGGTCTTTGGACGTTCCAGTAATTCTTGAAAAATATCTTGTCGAGGTAAAATCAGATCACATGTGGCTACTCTACATCCCTTTGAAATTATTCTTAGCTACTCTGAAGCTGATATCCAGAACTCTCCCACATGTTGATGATATCTATATGAAAGCTTACAGTGCAAAGGGCAGAGGTCTGGATTTGGATGTGAAGAATTGTGGGTATCGTTGGGTATATAAACAGGATCTACAAGAGTTCAACTTAACAATGATGCATCCCAGAAATCCGTTAGCTCGGAAGCGCAAGTTTTTGGCAATTGAAGATGAGGCAAAAACACAATCATTCATCTAA

Protein sequence

>Msa0608980

MACSSIQRSSSSSSSATMKYDVFVSFRGQDTRNNFANHLFAALQRKGVVAFRDDTKLKKGDSIAPELHHAIEASQVFLVVFSKNYASSTWCLGELEYILHCSQVSGRRVLPVFYDVDPSEVRHQKGSYGEALAKHEVRFQHESEMVQRWREALTQVANLCGWDMHHKPQYAEIEEIVEEIMNILGHNFSSLPKELVGMNSPIEKVVNQLLLDLVDDVRIVGICGMGGIGKTILATALYEQISRQFDARCFIDDLSKIYRHDGPIGAQKQILHQTLGKEHFQICNLYDTTNLIQSRLRRLRALIVVDNVDKVEQLDKLGVNREWLGAGSRIIIISRDEHILKEYGTDVVYKVPLLNETNSLQLFCQKAFKLDHIISSYEKLTIDILSYANGLPLAIKVLGSFLFGRDIDEWKSALARLKDSPNKDIMDVLRLSFEGLEKLEKEIFLDIACFFNLHEKGYVQNVLNRRGFHADIGLRVLIDKSLLSIRDENQIQMHSLLEELGIKIDQENSSTESRKWSRVWLHEQLHNLMLDNEEKEVEAICFLGYMDFNETKITVMGEALSKMTHLRLLILNDVIFSGNLSCLSNELRYVECGSYPFKYLPTSFQPNQLVELILRDNNIKQLWKDKKYLPNLKSLDLRHSKNLRKMPNFGEMPNLEKLNLKGCIKLVQIDPSIGVLRKLVFLKLKDCKNLVSIPNNILGLSSLKYLNLSGCSKVFNIVDLHSLYQKVLATHLLPSLLSLYCLREVDISFCGLSHLPDAIGCLRQLEILNIRGNNFVTLPSLREHSKLLYLNLEHCKLLETLPQLPLSTDIERDHHTGKYWWKTGLVIFNCLKLGESECCSSMAFSWLTQFIQARQYSSTFSYDDERSSTFLYNDDIKIVIPGSEMPIWFNNRSVGDSIRMNISQIMHDSDDNLIGIACCAVFSVAPVDPTTRCLPQLGLKFCNSNFPWSRSLDVPVILEKYLVEVKSDHMWLLYIPLKLFLATLKLISRTLPHVDDIYMKAYSAKGRGLDLDVKNCGYRWVYKQDLQEFNLTMMHPRNPLARKRKFLAIEDEAKTQSFI*