AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090420 MtrunA17_Chr1g0210321 93.434 198 13 0 1 198 1 198 7.91e-133 389
Msa0090420 MtrunA17_Chr1g0210321 77.255 255 40 4 136 373 243 496 1.14e-116 347
Msa0090420 MtrunA17_Chr1g0180381 59.447 217 84 1 1 213 1 217 1.60e-86 270
Msa0090420 MtrunA17_Chr1g0180381 45.699 186 81 4 175 356 303 472 7.09e-37 139
Msa0090420 MtrunA17_Chr7g0264891 62.088 182 66 2 1 181 1 180 4.62e-77 245
Msa0090420 MtrunA17_Chr7g0264891 49.438 178 70 3 187 363 310 468 9.17e-41 149
Msa0090420 MtrunA17_Chr4g0058051 61.818 165 56 2 35 197 29 188 6.42e-66 214
Msa0090420 MtrunA17_Chr4g0058051 59.596 99 39 1 187 284 302 400 3.04e-28 114
Msa0090420 MtrunA17_Chr6g0458201 64.516 155 48 2 35 187 27 176 1.88e-65 213
Msa0090420 MtrunA17_Chr6g0458201 53.398 103 48 0 187 289 300 402 1.28e-29 118
Msa0090420 MtrunA17_Chr1g0169731 59.477 153 59 1 35 187 73 222 8.09e-61 202
Msa0090420 MtrunA17_Chr1g0169731 61.386 101 39 0 187 287 346 446 5.33e-30 119
Msa0090420 MtrunA17_Chr3g0116521 62.329 146 52 1 35 180 29 171 8.67e-61 201
Msa0090420 MtrunA17_Chr3g0116521 57.732 97 41 0 187 283 302 398 1.89e-26 109
Msa0090420 MtrunA17_Chr4g0060211 49.733 187 88 2 33 213 50 236 2.16e-55 187
Msa0090420 MtrunA17_Chr4g0060211 50.515 97 46 1 187 283 332 426 1.82e-22 98.2
Msa0090420 MtrunA17_Chr7g0237761 55.556 153 65 1 35 187 67 216 5.20e-55 187
Msa0090420 MtrunA17_Chr7g0237761 62.376 101 38 0 187 287 340 440 3.15e-30 120
Msa0090420 MtrunA17_Chr3g0123331 56.291 151 63 2 30 180 23 170 3.29e-52 178
Msa0090420 MtrunA17_Chr3g0123331 51.020 98 47 1 187 283 301 398 1.16e-26 109
Msa0090420 MtrunA17_Chr3g0123321 55.862 145 58 2 35 179 29 167 1.25e-51 177
Msa0090420 MtrunA17_Chr3g0123321 57.895 95 40 0 187 281 299 393 4.95e-23 99.4
Msa0090420 MtrunA17_Chr6g0452861 46.354 192 92 3 33 213 61 252 1.16e-50 176
Msa0090420 MtrunA17_Chr6g0452861 44.762 105 53 2 187 286 348 452 2.34e-20 92.0
Msa0090420 MtrunA17_Chr5g0416061 59.259 135 55 0 52 186 85 219 1.90e-49 172
Msa0090420 MtrunA17_Chr5g0416061 42.105 95 54 1 187 280 344 438 2.93e-19 89.0
Msa0090420 MtrunA17_Chr8g0362561 59.690 129 52 0 58 186 90 218 3.03e-48 169
Msa0090420 MtrunA17_Chr8g0362561 44.660 103 49 2 187 281 343 445 8.18e-21 93.6
Msa0090420 MtrunA17_Chr4g0075231 62.500 120 44 1 67 186 39 157 1.44e-46 163
Msa0090420 MtrunA17_Chr4g0075231 44.792 96 50 2 187 281 282 375 2.75e-18 85.5
Msa0090420 MtrunA17_Chr2g0288921 60.800 125 48 1 62 186 58 181 6.93e-45 159
Msa0090420 MtrunA17_Chr2g0288921 46.875 96 48 2 187 281 306 399 6.37e-19 87.4
Msa0090420 MtrunA17_Chr5g0416041 55.975 159 65 2 33 186 61 219 5.06e-44 157
Msa0090420 MtrunA17_Chr5g0416041 42.708 96 54 1 187 281 344 439 1.65e-20 92.4
Msa0090420 MtrunA17_Chr7g0216581 46.243 173 75 2 33 187 50 222 1.49e-39 145
Msa0090420 MtrunA17_Chr7g0216581 45.918 98 52 1 187 283 346 443 8.22e-20 90.5
Msa0090420 MtrunA17_Chr8g0373761 37.241 145 85 4 48 187 21 164 1.63e-23 100
Msa0090420 MtrunA17_Chr8g0373721 39.024 123 71 3 67 186 42 163 2.34e-23 100
Msa0090420 MtrunA17_Chr3g0089181 36.879 141 79 4 49 186 11 144 2.83e-23 99.8
Msa0090420 MtrunA17_Chr5g0403481 42.975 121 63 4 64 180 38 156 4.89e-22 96.7
Msa0090420 MtrunA17_Chr5g0403461 42.975 121 63 4 64 180 38 156 4.89e-22 96.7
Msa0090420 MtrunA17_Chr5g0403491 42.975 121 63 4 64 180 38 156 4.89e-22 96.7
Msa0090420 MtrunA17_Chr5g0414541 43.103 116 60 4 64 175 38 151 1.77e-21 94.7
Msa0090420 MtrunA17_Chr8g0373701 37.398 123 73 3 67 186 97 218 1.81e-21 95.5
Msa0090420 MtrunA17_Chr5g0403391 41.322 121 65 4 64 180 38 156 2.90e-21 94.4
Msa0090420 MtrunA17_Chr8g0373731 39.316 117 67 3 67 180 42 157 3.79e-21 94.0
Msa0090420 MtrunA17_Chr5g0403411 40.000 120 66 4 64 179 38 155 4.17e-20 90.9
Msa0090420 MtrunA17_Chr2g0288901 46.465 99 48 4 187 284 55 149 2.05e-18 81.6
Msa0090420 MtrunA17_Chr1g0212931 42.202 109 57 2 81 189 10 112 3.17e-18 84.7
Msa0090420 MtrunA17_Chr1g0182021 44.340 106 53 2 84 189 62 161 1.11e-13 71.6
Msa0090420 MtrunA17_Chr4g0031851 40.964 83 47 2 106 187 28 109 2.67e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090420 AT5G04310.3 63.636 198 56 2 6 187 18 215 5.13e-80 253
Msa0090420 AT5G04310.3 80.000 100 20 0 188 287 340 439 4.51e-50 175
Msa0090420 AT5G04310.1 63.636 198 56 2 6 187 18 215 2.23e-79 253
Msa0090420 AT5G04310.1 65.190 158 49 4 188 340 340 496 1.79e-52 182
Msa0090420 AT5G04310.2 63.636 198 56 2 6 187 18 215 2.23e-79 253
Msa0090420 AT5G04310.2 65.190 158 49 4 188 340 340 496 1.79e-52 182
Msa0090420 AT3G53190.1 60.215 186 66 4 1 179 2 186 6.62e-70 227
Msa0090420 AT3G53190.1 52.326 172 67 5 187 358 318 474 1.60e-41 152
Msa0090420 AT3G54920.1 59.770 174 59 2 25 187 27 200 7.90e-70 227
Msa0090420 AT3G54920.1 72.816 103 27 1 188 289 316 418 1.58e-44 160
Msa0090420 AT5G63180.1 53.571 196 79 2 2 197 29 212 5.55e-67 218
Msa0090420 AT5G63180.1 54.369 103 45 1 187 287 326 428 9.05e-27 110
Msa0090420 AT1G67750.1 63.871 155 49 2 35 187 33 182 2.21e-65 213
Msa0090420 AT1G67750.1 54.639 97 44 0 187 283 304 400 1.32e-23 101
Msa0090420 AT4G24780.2 54.190 179 76 2 2 180 1 173 6.62e-63 207
Msa0090420 AT4G24780.2 57.732 97 41 0 187 283 304 400 2.63e-25 106
Msa0090420 AT4G24780.1 54.190 179 76 2 2 180 1 173 6.62e-63 207
Msa0090420 AT4G24780.1 57.732 97 41 0 187 283 304 400 2.63e-25 106
Msa0090420 AT3G07010.1 51.852 189 82 4 1 187 7 188 1.20e-60 201
Msa0090420 AT3G07010.1 60.825 97 38 0 187 283 312 408 1.03e-29 119
Msa0090420 AT1G04680.1 50.490 204 79 7 1 187 3 201 1.39e-60 201
Msa0090420 AT1G04680.1 61.856 97 37 0 187 283 325 421 1.54e-30 121
Msa0090420 AT3G07010.2 59.028 144 56 1 44 187 15 155 9.93e-59 195
Msa0090420 AT3G07010.2 60.825 97 38 0 187 283 279 375 7.30e-30 118
Msa0090420 AT4G13710.1 57.143 154 65 1 35 187 89 242 1.77e-58 197
Msa0090420 AT4G13710.1 62.245 98 37 0 187 284 366 463 6.91e-36 136
Msa0090420 AT4G13710.2 57.143 154 65 1 35 187 70 223 1.96e-58 196
Msa0090420 AT4G13710.2 62.245 98 37 0 187 284 347 444 7.23e-36 136
Msa0090420 AT3G24670.1 57.325 157 64 1 30 186 58 211 6.46e-58 194
Msa0090420 AT3G24670.1 59.794 97 39 0 187 283 336 432 7.25e-27 111
Msa0090420 AT3G24230.1 51.872 187 77 4 35 213 71 252 6.65e-55 187
Msa0090420 AT3G24230.1 56.436 101 43 1 187 287 348 447 7.24e-31 122
Msa0090420 AT4G13210.2 55.263 152 64 2 30 179 53 202 2.16e-53 182
Msa0090420 AT4G13210.2 61.856 97 37 0 187 283 334 430 7.11e-29 116
Msa0090420 AT4G13210.1 55.263 152 64 2 30 179 16 165 2.36e-53 182
Msa0090420 AT4G13210.1 61.856 97 37 0 187 283 297 393 5.85e-29 116
Msa0090420 AT5G48900.1 49.123 171 82 2 12 180 15 182 2.79e-53 182
Msa0090420 AT5G48900.1 57.732 97 41 0 187 283 313 409 4.40e-25 105
Msa0090420 AT3G27400.1 51.190 168 77 3 12 179 14 176 2.14e-52 179
Msa0090420 AT3G27400.1 48.515 101 52 0 187 287 308 408 1.62e-25 107
Msa0090420 AT1G14420.1 51.462 171 67 2 33 187 55 225 2.19e-52 181
Msa0090420 AT1G14420.1 47.115 104 49 1 187 284 349 452 8.75e-24 102
Msa0090420 AT3G27400.2 51.190 168 77 3 12 179 18 180 2.52e-52 179
Msa0090420 AT3G27400.2 48.515 101 52 0 187 287 312 412 1.74e-25 107
Msa0090420 AT5G55720.1 58.197 122 51 0 66 187 48 169 2.77e-48 168
Msa0090420 AT5G55720.1 51.429 105 48 2 182 283 280 384 4.16e-23 100
Msa0090420 AT2G02720.1 47.027 185 82 2 27 195 45 229 5.59e-48 169
Msa0090420 AT2G02720.1 43.269 104 53 1 187 284 345 448 2.51e-20 92.4
Msa0090420 AT1G11920.1 61.789 123 46 1 64 186 34 155 9.06e-48 166
Msa0090420 AT1G11920.1 46.316 95 49 2 188 281 281 374 9.52e-20 90.1
Msa0090420 AT3G01270.1 50.314 159 77 1 57 213 115 273 1.69e-46 165
Msa0090420 AT3G01270.1 42.424 99 55 2 187 283 369 467 6.59e-20 91.3
Msa0090420 AT5G15110.1 49.057 159 79 1 57 213 112 270 4.79e-46 164
Msa0090420 AT5G15110.1 45.098 102 48 3 187 283 366 464 3.91e-21 95.1
Msa0090420 AT1G30350.1 55.000 120 53 1 67 186 36 154 1.37e-41 150
Msa0090420 AT1G30350.1 40.426 94 55 1 188 281 266 358 2.10e-14 74.3
Msa0090420 AT4G22080.1 55.833 120 52 1 67 186 47 165 8.95e-41 148
Msa0090420 AT4G22080.1 44.860 107 55 3 188 293 291 394 1.33e-16 80.9
Msa0090420 AT4G22090.1 55.833 120 52 1 67 186 47 165 1.81e-40 147
Msa0090420 AT4G22090.1 43.925 107 56 3 188 293 291 394 1.97e-15 77.4
Msa0090420 AT3G55140.1 45.283 106 52 2 84 189 14 113 6.40e-19 87.0
Msa0090420 AT3G09540.2 47.170 106 50 2 84 189 61 160 5.83e-17 80.9
Msa0090420 AT3G09540.3 47.170 106 50 2 84 189 61 160 7.86e-17 81.6
Msa0090420 AT3G09540.1 47.170 106 50 2 84 189 61 160 8.63e-17 81.3
Msa0090420 AT5G09280.1 45.455 88 46 2 100 186 6 92 4.78e-15 75.5
Msa0090420 AT3G55140.2 49.275 69 34 1 121 189 22 89 2.19e-12 67.8

Find 148 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATTTGCTCCGCGGATTT+TGG 0.170833 1_2:+72404803 None:intergenic
AATGACGATGGGGACTTCTT+TGG 0.240587 1_2:-72400461 Msa0090420:CDS
GTTCCTGGAACTGGATTTGC+TGG 0.280233 1_2:+72405784 None:intergenic
AAATTAGCTGATTGCGGAAT+TGG 0.284293 1_2:-72405877 Msa0090420:CDS
GCTGATTGCGGAATTGGTTT+TGG 0.301277 1_2:-72405871 Msa0090420:CDS
GACGGTTTGCGGACCAGTTT+GGG 0.311644 1_2:+72405902 None:intergenic
TGAGAGGTGTTGTTGTTGTT+GGG 0.318303 1_2:+72406293 None:intergenic
GCAATCGTCTACCGGGTTTC+CGG 0.325899 1_2:+72405936 None:intergenic
AGACGAACCTCTTTAGCATT+TGG 0.329352 1_2:+72405118 None:intergenic
TACTATGATGATCTCACAAT+TGG 0.332704 1_2:-72400298 Msa0090420:exon
GAAGGGGATATAATGGTAAA+TGG 0.334776 1_2:-72404890 Msa0090420:CDS
AGTTCGTGAACCACAGCTTC+AGG 0.341841 1_2:+72406118 None:intergenic
GTGAGAGGTGTTGTTGTTGT+TGG 0.346680 1_2:+72406292 None:intergenic
ATGACGATGGGGACTTCTTT+GGG 0.346686 1_2:-72400460 Msa0090420:CDS
TGACGGTTTGCGGACCAGTT+TGG 0.355210 1_2:+72405901 None:intergenic
GAATTATTGAGCAGGGATAA+TGG 0.357438 1_2:-72400566 Msa0090420:intron
GACCAAGGCAATTGTTTAAC+CGG 0.363053 1_2:-72405955 Msa0090420:CDS
ACGGCGTGACGGAGTGTTCC+TGG 0.372447 1_2:+72405769 None:intergenic
ATGAATGGAGTGGTTGGAAT+TGG 0.374993 1_2:-72404919 Msa0090420:CDS
GAAGTCCCCATCGTCATTGC+TGG 0.388593 1_2:+72400466 None:intergenic
AGCTAATTTCTGACGGTTTG+CGG 0.392339 1_2:+72405891 None:intergenic
TGACGGAGTGTTCCTGGAAC+TGG 0.403848 1_2:+72405775 None:intergenic
TTATCACGTTTGAGATGTAT+TGG 0.404588 1_2:+72405605 None:intergenic
TAGCGGTGCTGCTTGGCTGC+TGG 0.409238 1_2:+72400421 None:intergenic
TTCTTTGTACCGTCAGGGGT+GGG 0.410262 1_2:-72404863 Msa0090420:CDS
GCTGGCGATGCGACCCAAAC+TGG 0.410954 1_2:-72405915 Msa0090420:CDS
AGGGTGCTAGCGGTGCTGCT+TGG 0.418501 1_2:+72400414 None:intergenic
ATGGGTAAGTAAGCAAGTTA+AGG 0.418760 1_2:+72406326 None:intergenic
GTTAAGGAAGAAGGGGTTGA+GGG 0.419314 1_2:+72406342 None:intergenic
GAAACCCGGTAGACGATTGC+TGG 0.420048 1_2:-72405933 Msa0090420:CDS
CAAGGGTTACAATGGGAATG+GGG 0.421820 1_2:-72400492 Msa0090420:CDS
GGAGCATTCTTTGTACCGTC+AGG 0.427296 1_2:-72404869 Msa0090420:CDS
GTAAGCAAGTTAAGGAAGAA+GGG 0.428039 1_2:+72406334 None:intergenic
ATTAAAAGAATGCAGCTCAT+AGG 0.428979 1_2:+72406214 None:intergenic
AGTAAGCAAGTTAAGGAAGA+AGG 0.429697 1_2:+72406333 None:intergenic
ACCATGTACTCTGGTGTATT+CGG 0.434723 1_2:-72404773 Msa0090420:CDS
TGGATTTGCTGGGTCGTTGT+CGG 0.436703 1_2:+72405795 None:intergenic
AGTTAAGGAAGAAGGGGTTG+AGG 0.436769 1_2:+72406341 None:intergenic
GAGGACGGAAGGGGATATAA+TGG 0.441518 1_2:-72404897 Msa0090420:CDS
TCTTCAATGCACAACAACTT+AGG 0.443195 1_2:+72406431 None:intergenic
GACCCAGCAAATCCAGTTCC+AGG 0.444172 1_2:-72405787 Msa0090420:CDS
TTGGTGGGGTAAGGTGAGGT+TGG 0.444612 1_2:+72406150 None:intergenic
ACTATGATGATCTCACAATT+GGG 0.445655 1_2:-72400297 Msa0090420:exon
CGCGCCGCCATGGGAGGTAA+AGG 0.452207 1_2:-72405847 Msa0090420:CDS
GTAAGGATGTTGGTGGGGTA+AGG 0.452310 1_2:+72406141 None:intergenic
CATCGCCAGCAATCGTCTAC+CGG 0.455027 1_2:+72405928 None:intergenic
TTACCCTGACTGTTAATAGT+AGG 0.455282 1_2:+72405163 None:intergenic
TAATCCTACTATTAACAGTC+AGG 0.457298 1_2:-72405167 Msa0090420:CDS
CCCATTGTAACCCTTGCTGT+TGG 0.468036 1_2:+72400499 None:intergenic
AAGGGTTACAATGGGAATGG+GGG 0.475311 1_2:-72400491 Msa0090420:CDS
GATAATGGAGATATATATCC+CGG 0.478536 1_2:-72400551 Msa0090420:CDS
AACGGTGGTGGGACCACGAC+AGG 0.479684 1_2:-72400524 Msa0090420:CDS
GGTTGGAATTGGAGGACGGA+AGG 0.480151 1_2:-72404908 Msa0090420:CDS
GCAAGGGTTACAATGGGAAT+GGG 0.483203 1_2:-72400493 Msa0090420:CDS
TGGATACAAATGATAATGAA+TGG 0.489364 1_2:-72404934 Msa0090420:CDS
TGAACCACAGCTTCAGGGTA+AGG 0.490310 1_2:+72406124 None:intergenic
TTCCGGTTAAACAATTGCCT+TGG 0.492172 1_2:+72405953 None:intergenic
ATGATAATGAATGGAGTGGT+TGG 0.493562 1_2:-72404925 Msa0090420:CDS
TCTTTGTACCGTCAGGGGTG+GGG 0.494905 1_2:-72404862 Msa0090420:CDS
TTGGAATTGGAGGACGGAAG+GGG 0.495602 1_2:-72404906 Msa0090420:CDS
GAGAGGTGTTGTTGTTGTTG+GGG 0.497687 1_2:+72406294 None:intergenic
GGTCCCACCACCGTTGAACC+CGG 0.506993 1_2:+72400532 None:intergenic
AAATACAATTGATGATGAGT+AGG 0.507834 1_2:+72400394 None:intergenic
TACAAAACCGTCGACGGCCG+CGG 0.508128 1_2:-72405667 Msa0090420:CDS
TTCCGATCCAAATGCTAAAG+AGG 0.508833 1_2:-72405125 Msa0090420:intron
CGCAATCAGCTAATTTCTGA+CGG 0.511044 1_2:+72405884 None:intergenic
AGCAAGGGTTACAATGGGAA+TGG 0.513689 1_2:-72400494 Msa0090420:CDS
GAGTGTGATGCAACCGTGGC+CGG 0.515352 1_2:+72405627 None:intergenic
ATTCTTTGTACCGTCAGGGG+TGG 0.517273 1_2:-72404864 Msa0090420:CDS
ATTTGCGCCGCGGCCGTCGA+CGG 0.518041 1_2:+72405660 None:intergenic
TGCACAACAACTTAGGAAGC+TGG 0.518282 1_2:+72406438 None:intergenic
AATGGAGTGGTTGGAATTGG+AGG 0.522305 1_2:-72404916 Msa0090420:CDS
TGATAATAGAATATCATAGT+TGG 0.522598 1_2:+72400322 None:intergenic
GGCGCAAATGTTCAAATCAC+CGG 0.523686 1_2:-72405646 Msa0090420:CDS
TCTTTAGCATTTGGATCGGA+AGG 0.525976 1_2:+72405127 None:intergenic
GATATATATCCCGGGTTCAA+CGG 0.530636 1_2:-72400542 Msa0090420:CDS
CACCAGAGTACATGGTAAGC+TGG 0.533022 1_2:+72404780 None:intergenic
GTTGGAATTGGAGGACGGAA+GGG 0.533218 1_2:-72404907 Msa0090420:CDS
CTTGCTGTTGGCTCCTGTCG+TGG 0.533400 1_2:+72400511 None:intergenic
TTAAGGAAGAAGGGGTTGAG+GGG 0.535427 1_2:+72406343 None:intergenic
TTCTTTGGGATGATATTCAA+AGG 0.538599 1_2:-72400446 Msa0090420:CDS
TATCCCGGGTTCAACGGTGG+TGG 0.538874 1_2:-72400536 Msa0090420:CDS
AGGGTTACAATGGGAATGGG+GGG 0.539386 1_2:-72400490 Msa0090420:CDS
GAGGTTTATTGTCATTGAAG+AGG 0.539582 1_2:+72405714 None:intergenic
GCCAACAGCAAGGGTTACAA+TGG 0.540333 1_2:-72400500 Msa0090420:CDS
GAGATAAGAAAGAGCACAAG+AGG 0.541289 1_2:+72406188 None:intergenic
CAATTGTTTAACCGGAAACC+CGG 0.544194 1_2:-72405947 Msa0090420:CDS
GTTCGTGAACCACAGCTTCA+GGG 0.545323 1_2:+72406119 None:intergenic
CTGGTGTATTCGGTGATCCC+AGG 0.546191 1_2:-72404763 Msa0090420:intron
TAAGTTGTTGTGCATTGAAG+AGG 0.547126 1_2:-72406429 Msa0090420:five_prime_UTR
TAAGCAAGTTAAGGAAGAAG+GGG 0.549197 1_2:+72406335 None:intergenic
TTTGGTCGCGCCGCCATGGG+AGG 0.551573 1_2:-72405853 Msa0090420:CDS
ATCGCCAGCAATCGTCTACC+GGG 0.553121 1_2:+72405929 None:intergenic
CTGACCTCCTTTACCTCCCA+TGG 0.554855 1_2:+72405840 None:intergenic
GAGCATTCTTTGTACCGTCA+GGG 0.555948 1_2:-72404868 Msa0090420:CDS
ACCGAATACACCAGAGTACA+TGG 0.557818 1_2:+72404772 None:intergenic
TTCAGGGTAAGGATGTTGGT+GGG 0.561844 1_2:+72406135 None:intergenic
AATTCTTACAAAACCGTCGA+CGG 0.563410 1_2:-72405673 Msa0090420:CDS
CAGCTTCAGGGTAAGGATGT+TGG 0.564738 1_2:+72406131 None:intergenic
AATACAATTGATGATGAGTA+GGG 0.567604 1_2:+72400395 None:intergenic
TTCCTGGAACTGGATTTGCT+GGG 0.567740 1_2:+72405785 None:intergenic
GAGTGGTTCGTCTTGAATCA+CGG 0.568199 1_2:+72405750 None:intergenic
TGATTCAAGACGAACCACTC+TGG 0.570543 1_2:-72405747 Msa0090420:CDS
CCAACAGCAAGGGTTACAAT+GGG 0.571803 1_2:-72400499 Msa0090420:CDS
AACCAGCTTACCATGTACTC+TGG 0.574293 1_2:-72404782 Msa0090420:CDS
AGTGATGAACATGGATATTG+TGG 0.574584 1_2:+72405581 None:intergenic
AACCTCTTTAGCATTTGGAT+CGG 0.577413 1_2:+72405123 None:intergenic
TGATGATCTCACAATTGGGG+TGG 0.578180 1_2:-72400293 Msa0090420:three_prime_UTR
GAGTGGTTGGAATTGGAGGA+CGG 0.578221 1_2:-72404912 Msa0090420:CDS
CAGTGGGAAATGTATGCTAT+CGG 0.579655 1_2:-72405199 Msa0090420:CDS
AGAGGTGTTGTTGTTGTTGG+GGG 0.583902 1_2:+72406295 None:intergenic
CTTCAGGGTAAGGATGTTGG+TGG 0.587281 1_2:+72406134 None:intergenic
GATGATCTCACAATTGGGGT+GGG 0.588528 1_2:-72400292 Msa0090420:three_prime_UTR
GGGGATGAGTGCTCAGTATG+CGG 0.590141 1_2:-72404843 Msa0090420:CDS
GTCCCACCACCGTTGAACCC+GGG 0.593981 1_2:+72400533 None:intergenic
GATCGGAAGGAGCTGTGTAA+CGG 0.594179 1_2:+72405140 None:intergenic
ATTTGCTGGGTCGTTGTCGG+AGG 0.596182 1_2:+72405798 None:intergenic
GCACTCATCCCCACCCCTGA+CGG 0.600409 1_2:+72404854 None:intergenic
AATGTTCAAATCACCGGCCA+CGG 0.603117 1_2:-72405640 Msa0090420:CDS
GCCGCCATGGGAGGTAAAGG+AGG 0.603203 1_2:-72405844 Msa0090420:CDS
ATCCCGGGTTCAACGGTGGT+GGG 0.607721 1_2:-72400535 Msa0090420:CDS
AGCATTCTTTGTACCGTCAG+GGG 0.608432 1_2:-72404867 Msa0090420:CDS
CGTCAGAAATTAGCTGATTG+CGG 0.608973 1_2:-72405883 Msa0090420:CDS
CGTCTTGAATCACGGCGTGA+CGG 0.617300 1_2:+72405758 None:intergenic
CACGACAGGAGCCAACAGCA+AGG 0.620533 1_2:-72400510 Msa0090420:CDS
ACATCCTTACCCTGAAGCTG+TGG 0.625686 1_2:-72406128 Msa0090420:CDS
TGAAGATGAGTTCATGACGG+AGG 0.630356 1_2:+72405695 None:intergenic
ATAATAATGACTTGTGTGAG+AGG 0.633787 1_2:+72406277 None:intergenic
GATGTTGGTGGGGTAAGGTG+AGG 0.633904 1_2:+72406146 None:intergenic
CTATGATGATCTCACAATTG+GGG 0.634323 1_2:-72400296 Msa0090420:exon
TCAGGGTAAGGATGTTGGTG+GGG 0.638203 1_2:+72406136 None:intergenic
GGGGTCCAGCAATGACGATG+GGG 0.639197 1_2:-72400471 Msa0090420:CDS
GATGAGTGCTCAGTATGCGG+AGG 0.641480 1_2:-72404840 Msa0090420:CDS
AATCCTACTATTAACAGTCA+GGG 0.652401 1_2:-72405166 Msa0090420:CDS
ACGACAGGAGCCAACAGCAA+GGG 0.655554 1_2:-72400509 Msa0090420:CDS
ATAATGGAGATATATATCCC+GGG 0.660215 1_2:-72400550 Msa0090420:CDS
TGATTTGAACATTTGCGCCG+CGG 0.665434 1_2:+72405650 None:intergenic
AATTGAAGATGAGTTCATGA+CGG 0.666509 1_2:+72405692 None:intergenic
ACAAATGATAATGAATGGAG+TGG 0.669476 1_2:-72404929 Msa0090420:CDS
GAACTGCTCTCAAAAGACCA+AGG 0.670634 1_2:-72405970 Msa0090420:CDS
GAGGAGAAGATTATCCAGAG+TGG 0.673042 1_2:+72405733 None:intergenic
TGGGAAATGTATGCTATCGG+AGG 0.682262 1_2:-72405196 Msa0090420:CDS
ATATATCCCGGGTTCAACGG+TGG 0.685525 1_2:-72400539 Msa0090420:CDS
ACCTCCTTTACCTCCCATGG+CGG 0.692724 1_2:+72405843 None:intergenic
AAGCTGGTTAATTTGCTCCG+CGG 0.697685 1_2:+72404796 None:intergenic
AAGTGTACAGCCAAAATCCG+CGG 0.698539 1_2:-72404813 Msa0090420:CDS
GATGATGAGTAGGGTGCTAG+CGG 0.717031 1_2:+72400404 None:intergenic
ATTGGAGTGTGATGCAACCG+TGG 0.724281 1_2:+72405623 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAATCATGTTAATAT+AGG - chr1_2:72401943-72401962 Msa0090420:intron 10.0%
!! AAATAAAAAATGGAAAATTA+AGG - chr1_2:72402852-72402871 Msa0090420:intron 10.0%
!!! TATTTTTCTTTGTAAAATTA+TGG + chr1_2:72404697-72404716 None:intergenic 10.0%
!!! ATAATTTTACAAAGAAAAAT+AGG - chr1_2:72404696-72404715 Msa0090420:intron 10.0%
!! TACAAAATAAATTTAGATTA+GGG + chr1_2:72405754-72405773 None:intergenic 10.0%
!! ATACAAAATAAATTTAGATT+AGG + chr1_2:72405755-72405774 None:intergenic 10.0%
!!! TCTTTTAATTATTTTCAATT+TGG - chr1_2:72406249-72406268 Msa0090420:five_prime_UTR 10.0%
!! CTACTAAATTACTTAAAAAT+TGG + chr1_2:72402410-72402429 None:intergenic 15.0%
!!! ATTTATAGCATTTTAATTGA+AGG - chr1_2:72402747-72402766 Msa0090420:intron 15.0%
!!! TTTATAGCATTTTAATTGAA+GGG - chr1_2:72402748-72402767 Msa0090420:intron 15.0%
!! GTTAAAGACAAAATAAAAAA+TGG - chr1_2:72402842-72402861 Msa0090420:intron 15.0%
!!! AATAATTTTTGAGCTAATAA+CGG + chr1_2:72403480-72403499 None:intergenic 15.0%
!!! TTTTTAGAAGAAATTAATGA+CGG - chr1_2:72403622-72403641 Msa0090420:intron 15.0%
!! AAATATGTTTATGTTATGAA+AGG + chr1_2:72404591-72404610 None:intergenic 15.0%
!!! ATAGTTTGAAATTTTATAGA+GGG + chr1_2:72405239-72405258 None:intergenic 15.0%
!!! TATAGTTTGAAATTTTATAG+AGG + chr1_2:72405240-72405259 None:intergenic 15.0%
!! TTTGTATAAAGAAAAAAAGT+AGG - chr1_2:72405768-72405787 Msa0090420:CDS 15.0%
!!! ACAATTTCGAATAATCATTT+TGG - chr1_2:72401221-72401240 Msa0090420:intron 20.0%
!! TATTGAAAAATGTAATACCT+GGG + chr1_2:72401860-72401879 None:intergenic 20.0%
!! ATATTGAAAAATGTAATACC+TGG + chr1_2:72401861-72401880 None:intergenic 20.0%
!! ATTAATCATGTTAATATAGG+AGG - chr1_2:72401946-72401965 Msa0090420:intron 20.0%
!!! AAAGATTACTATAGTCTTTT+TGG - chr1_2:72402066-72402085 Msa0090420:intron 20.0%
!!! AGAGATAAAATAAAAAGTGT+AGG + chr1_2:72402126-72402145 None:intergenic 20.0%
!! AATAAAATGAAAAACACACA+TGG - chr1_2:72402148-72402167 Msa0090420:intron 20.0%
!! TGGTAAAATTATTGTAATGA+TGG - chr1_2:72402356-72402375 Msa0090420:intron 20.0%
!!! ATAAAACCCTTTTTTTATGT+GGG - chr1_2:72402572-72402591 Msa0090420:intron 20.0%
!! GAAAATTAAGGAATTAAAAG+AGG - chr1_2:72402864-72402883 Msa0090420:intron 20.0%
!!! TAAAAGAGGTAAGTTTTTAT+AGG - chr1_2:72402878-72402897 Msa0090420:intron 20.0%
!!! TTCTTTAAGTTGTATTTTGA+AGG - chr1_2:72402927-72402946 Msa0090420:intron 20.0%
!! AACAGTTATAAAAGTTGAAA+TGG - chr1_2:72403008-72403027 Msa0090420:intron 20.0%
!! ACAGTTATAAAAGTTGAAAT+GGG - chr1_2:72403009-72403028 Msa0090420:intron 20.0%
!!! GTTATTTTTTAAACAAGTCA+AGG - chr1_2:72403036-72403055 Msa0090420:intron 20.0%
!! TTGTAAAAAGTTGAATTGTT+TGG - chr1_2:72403127-72403146 Msa0090420:intron 20.0%
!!! AATTGTTTGGTTAAAAGTAT+CGG - chr1_2:72403140-72403159 Msa0090420:intron 20.0%
!!! TCATTTTTCAAAAGAAATAG+AGG - chr1_2:72403558-72403577 Msa0090420:intron 20.0%
!! TAGATACAAAAAGTTAAAAC+TGG + chr1_2:72403654-72403673 None:intergenic 20.0%
!!! ATGACGTTACAAATTAATTT+TGG - chr1_2:72403730-72403749 Msa0090420:intron 20.0%
!! TATAGACAATATAGAAAAAG+AGG - chr1_2:72403900-72403919 Msa0090420:intron 20.0%
!! ATTTAGACATCTTAAATAAG+TGG - chr1_2:72404208-72404227 Msa0090420:intron 20.0%
!! CATCTATAATCTATAACATA+TGG - chr1_2:72404324-72404343 Msa0090420:intron 20.0%
!! TTACAAAGAAAAATAGGTAT+TGG - chr1_2:72404702-72404721 Msa0090420:intron 20.0%
!! TACAAAGAAAAATAGGTATT+GGG - chr1_2:72404703-72404722 Msa0090420:intron 20.0%
!!! TAGTTTGAAATTTTATAGAG+GGG + chr1_2:72405238-72405257 None:intergenic 20.0%
!! TGACTAGATTCAATAAATTT+AGG + chr1_2:72405298-72405317 None:intergenic 20.0%
!!! TTCTTAGCTATTAAAGTATT+TGG - chr1_2:72405539-72405558 Msa0090420:intron 20.0%
!! AAAATAAATTTAGATTAGGG+AGG + chr1_2:72405751-72405770 None:intergenic 20.0%
!! ATAACAATAGCAAGAAAAAA+TGG + chr1_2:72405925-72405944 None:intergenic 20.0%
!! TGATAATAGAATATCATAGT+TGG + chr1_2:72406284-72406303 None:intergenic 20.0%
!!! TTTTCCTTTGATAACTTTTT+TGG + chr1_2:72406355-72406374 None:intergenic 20.0%
!! TTAACAATGATTTTACACAG+TGG - chr1_2:72401387-72401406 Msa0090420:intron 25.0%
!! TAACAATGATTTTACACAGT+GGG - chr1_2:72401388-72401407 Msa0090420:intron 25.0%
!! TGGATACAAATGATAATGAA+TGG - chr1_2:72401669-72401688 Msa0090420:intron 25.0%
!! GTGCTAAATCTAACTTTTTA+TGG - chr1_2:72402336-72402355 Msa0090420:intron 25.0%
! AAGTAATTTAGTAGTGAATC+AGG - chr1_2:72402416-72402435 Msa0090420:intron 25.0%
! AGTAATTTAGTAGTGAATCA+GGG - chr1_2:72402417-72402436 Msa0090420:intron 25.0%
! TTCTTATATAAAGTTGAGTG+TGG - chr1_2:72402543-72402562 Msa0090420:intron 25.0%
!!! GATAAAACCCTTTTTTTATG+TGG - chr1_2:72402571-72402590 Msa0090420:intron 25.0%
!!! TAAAACCCTTTTTTTATGTG+GGG - chr1_2:72402573-72402592 Msa0090420:intron 25.0%
! AAATGTAGCTCAATTCATAA+TGG + chr1_2:72402731-72402750 None:intergenic 25.0%
!! TTTTAAACAAGTCAAGGTTT+AGG - chr1_2:72403042-72403061 Msa0090420:intron 25.0%
! TTTAAACAAGTCAAGGTTTA+GGG - chr1_2:72403043-72403062 Msa0090420:intron 25.0%
!!! TCGTTTTTCTGAAAAACTAT+AGG - chr1_2:72403324-72403343 Msa0090420:intron 25.0%
!!! TATTTTGACAAACTGAACTA+TGG - chr1_2:72403496-72403515 Msa0090420:intron 25.0%
!! TGTGTTTATTTCTCTCTAAA+GGG + chr1_2:72403587-72403606 None:intergenic 25.0%
!! TTGTGTTTATTTCTCTCTAA+AGG + chr1_2:72403588-72403607 None:intergenic 25.0%
! TGTATCTATCTCTTTCAAAA+TGG - chr1_2:72403666-72403685 Msa0090420:intron 25.0%
! TCATTTCTCAAAAGAAATAG+AGG + chr1_2:72403695-72403714 None:intergenic 25.0%
! CATATTCATTCATCAATATG+TGG - chr1_2:72404166-72404185 Msa0090420:intron 25.0%
!! TCCATTTTCCCTAAAAAATT+TGG - chr1_2:72405097-72405116 Msa0090420:intron 25.0%
!!! ACCAAATTTTTTAGGGAAAA+TGG + chr1_2:72405101-72405120 None:intergenic 25.0%
!!! ATGAGGAACCAAATTTTTTA+GGG + chr1_2:72405108-72405127 None:intergenic 25.0%
!!! AATGAGGAACCAAATTTTTT+AGG + chr1_2:72405109-72405128 None:intergenic 25.0%
! CATACAAAATCACATAAATG+AGG + chr1_2:72405125-72405144 None:intergenic 25.0%
!! AATGTAGAGATACTCTAAAA+TGG + chr1_2:72405177-72405196 None:intergenic 25.0%
!!! ATTTTAGAGTATCTCTACAT+TGG - chr1_2:72405176-72405195 Msa0090420:CDS 25.0%
!!! AAAGTTCGGAATTTTTCAAT+TGG - chr1_2:72405652-72405671 Msa0090420:CDS 25.0%
! TAATAAGTGAATTATTGAGC+AGG - chr1_2:72406029-72406048 Msa0090420:intron 25.0%
! AATAAGTGAATTATTGAGCA+GGG - chr1_2:72406030-72406049 Msa0090420:intron 25.0%
!!! AATACAATTGATGATGAGTA+GGG + chr1_2:72406211-72406230 None:intergenic 25.0%
!!! AAATACAATTGATGATGAGT+AGG + chr1_2:72406212-72406231 None:intergenic 25.0%
!!! GATAACTTTTTTGGTATCAA+AGG + chr1_2:72406346-72406365 None:intergenic 25.0%
! GATACCAAAAAAGTTATCAA+AGG - chr1_2:72406348-72406367 Msa0090420:five_prime_UTR 25.0%
! ATAATAATGACTTGTGTGAG+AGG + chr1_2:72400329-72400348 None:intergenic 30.0%
ATTAAAAGAATGCAGCTCAT+AGG + chr1_2:72400392-72400411 None:intergenic 30.0%
!!! TTTTTGTTGTTAATGCATGC+AGG - chr1_2:72400583-72400602 Msa0090420:intron 30.0%
!!! TCAATGTGTCATTTTCTAGA+AGG - chr1_2:72400610-72400629 Msa0090420:intron 30.0%
!!! CAATGTGTCATTTTCTAGAA+GGG - chr1_2:72400611-72400630 Msa0090420:intron 30.0%
AATTGAAGATGAGTTCATGA+CGG + chr1_2:72400914-72400933 None:intergenic 30.0%
! TTATCACGTTTGAGATGTAT+TGG + chr1_2:72401001-72401020 None:intergenic 30.0%
GGTTTAATCGATGCTATAAT+GGG - chr1_2:72401185-72401204 Msa0090420:intron 30.0%
GTTTAATCGATGCTATAATG+GGG - chr1_2:72401186-72401205 Msa0090420:intron 30.0%
! ATTCGAAATTGTTATTGCAG+TGG + chr1_2:72401213-72401232 None:intergenic 30.0%
ACAATAGCGTTTAATCACTT+TGG - chr1_2:72401311-72401330 Msa0090420:intron 30.0%
TAATCCTACTATTAACAGTC+AGG - chr1_2:72401436-72401455 Msa0090420:intron 30.0%
AATCCTACTATTAACAGTCA+GGG - chr1_2:72401437-72401456 Msa0090420:intron 30.0%
!! GTTTTACCCTTTTTGCTTTT+TGG - chr1_2:72401520-72401539 Msa0090420:intron 30.0%
GCATTTCCAAAAAGCAAAAA+GGG + chr1_2:72401529-72401548 None:intergenic 30.0%
TGCATTTCCAAAAAGCAAAA+AGG + chr1_2:72401530-72401549 None:intergenic 30.0%
! CTTTCTTTGACTCATGTTTT+TGG - chr1_2:72401558-72401577 Msa0090420:intron 30.0%
!! ATGCTAATGATGGAATTTTC+AGG - chr1_2:72401634-72401653 Msa0090420:intron 30.0%
! ACAAATGATAATGAATGGAG+TGG - chr1_2:72401674-72401693 Msa0090420:intron 30.0%
TGTTCAAAAAAGTAAGGTGA+TGG + chr1_2:72401892-72401911 None:intergenic 30.0%
AAGACGTGTTCAAAAAAGTA+AGG + chr1_2:72401898-72401917 None:intergenic 30.0%
CACGTCTTGCATTATTTAAT+TGG - chr1_2:72401910-72401929 Msa0090420:intron 30.0%
AATCATGTTAATATAGGAGG+AGG - chr1_2:72401949-72401968 Msa0090420:intron 30.0%
! ACATTACCTGTCTTATTAAC+TGG - chr1_2:72401993-72402012 Msa0090420:intron 30.0%
CTTATTAACTGGCATTAGAA+AGG - chr1_2:72402004-72402023 Msa0090420:intron 30.0%
! AATAAAAAGTGTAGGACACT+AGG + chr1_2:72402118-72402137 None:intergenic 30.0%
TATAGCATAGTACTGTGAAA+AGG - chr1_2:72402235-72402254 Msa0090420:intron 30.0%
! TGTAATGATGGTGTAAAACA+AGG - chr1_2:72402368-72402387 Msa0090420:intron 30.0%
TGTAAAACAAGGTTGGAAAT+TGG - chr1_2:72402379-72402398 Msa0090420:intron 30.0%
GTAATTTAGTAGTGAATCAG+GGG - chr1_2:72402418-72402437 Msa0090420:intron 30.0%
CGAATGCTAACAAAAAAAAG+TGG + chr1_2:72402518-72402537 None:intergenic 30.0%
! AGTTTTCACCTTTCAAAATC+AGG + chr1_2:72402604-72402623 None:intergenic 30.0%
TCCTTCAATTTCAATCCTAA+AGG + chr1_2:72402809-72402828 None:intergenic 30.0%
AATGAGTGATGTAAGAACAT+TGG + chr1_2:72402984-72403003 None:intergenic 30.0%
GTGAGAAAGAATTGCAAAAA+AGG - chr1_2:72403081-72403100 Msa0090420:intron 30.0%
!! CAAAAAAGGAGTGCTATATT+GGG - chr1_2:72403095-72403114 Msa0090420:intron 30.0%
ATACATGATAAGCTAGATAC+TGG - chr1_2:72403163-72403182 Msa0090420:intron 30.0%
! TCAACTAGCTTATCAGTTAT+TGG + chr1_2:72403206-72403225 None:intergenic 30.0%
CTAAGATCTGTTTATAAGTG+TGG - chr1_2:72403520-72403539 Msa0090420:intron 30.0%
TTAGAAGAAATTAATGACGG+TGG - chr1_2:72403625-72403644 Msa0090420:intron 30.0%
TAGAAGAAATTAATGACGGT+GGG - chr1_2:72403626-72403645 Msa0090420:intron 30.0%
AATTTGTAACGTCATGAGTT+AGG + chr1_2:72403725-72403744 None:intergenic 30.0%
AGGAATTAGAAGAGATATAG+AGG - chr1_2:72403920-72403939 Msa0090420:intron 30.0%
AGAAATGCTGAAGATAAATC+AGG - chr1_2:72403974-72403993 Msa0090420:intron 30.0%
CAACATGTACAGTATAGAAT+TGG + chr1_2:72404060-72404079 None:intergenic 30.0%
CAATTCTATACTGTACATGT+TGG - chr1_2:72404058-72404077 Msa0090420:intron 30.0%
TGAAAAAACCCAATTGAATG+CGG - chr1_2:72404260-72404279 Msa0090420:intron 30.0%
GCTATAGTCAATAAATCTGT+TGG + chr1_2:72404305-72404324 None:intergenic 30.0%
! GATTTGGACTTTTCTAACTT+TGG + chr1_2:72404373-72404392 None:intergenic 30.0%
AGTTAGAAAAGTCCAAATCT+TGG - chr1_2:72404374-72404393 Msa0090420:intron 30.0%
! TGCTGGAAAGCATATAAAAA+GGG + chr1_2:72404555-72404574 None:intergenic 30.0%
! TTGCTGGAAAGCATATAAAA+AGG + chr1_2:72404556-72404575 None:intergenic 30.0%
AACACAACTCAATCAGAAAT+GGG + chr1_2:72404637-72404656 None:intergenic 30.0%
TAACACAACTCAATCAGAAA+TGG + chr1_2:72404638-72404657 None:intergenic 30.0%
! CTATTTGACTGACAACTTTT+CGG - chr1_2:72404667-72404686 Msa0090420:intron 30.0%
TATTGGATCAGAATTTGGAA+AGG - chr1_2:72404849-72404868 Msa0090420:CDS 30.0%
ATTGGATCAGAATTTGGAAA+GGG - chr1_2:72404850-72404869 Msa0090420:CDS 30.0%
ATTAATTCTCTAGTACCTAC+TGG - chr1_2:72405054-72405073 Msa0090420:intron 30.0%
GGTATGAGTCAAAACATAAA+TGG + chr1_2:72405365-72405384 None:intergenic 30.0%
!!! TTTATGTTTTGACTCATACC+AGG - chr1_2:72405365-72405384 Msa0090420:intron 30.0%
CTATCAATAGCAACGTTAAT+TGG + chr1_2:72405502-72405521 None:intergenic 30.0%
!! TTCGGAATTTTTCAATTGGT+TGG - chr1_2:72405656-72405675 Msa0090420:CDS 30.0%
!! AAAGTACCTTCCTTTTTGTT+TGG + chr1_2:72405999-72406018 None:intergenic 30.0%
!! GATAATGGAGATATATATCC+CGG - chr1_2:72406052-72406071 Msa0090420:intron 30.0%
! ATAATGGAGATATATATCCC+GGG - chr1_2:72406053-72406072 Msa0090420:intron 30.0%
!! TTCTTTGGGATGATATTCAA+AGG - chr1_2:72406157-72406176 Msa0090420:CDS 30.0%
TACTATGATGATCTCACAAT+TGG - chr1_2:72406305-72406324 Msa0090420:five_prime_UTR 30.0%
ACTATGATGATCTCACAATT+GGG - chr1_2:72406306-72406325 Msa0090420:five_prime_UTR 30.0%
!! GAATTTTTGGGAATTGGGTT+GGG + chr1_2:72400146-72400165 None:intergenic 35.0%
!! AGCTGGAATTTTTGGGAATT+GGG + chr1_2:72400151-72400170 None:intergenic 35.0%
!! AAGCTGGAATTTTTGGGAAT+TGG + chr1_2:72400152-72400171 None:intergenic 35.0%
! CTTAGGAAGCTGGAATTTTT+GGG + chr1_2:72400158-72400177 None:intergenic 35.0%
! ACTTAGGAAGCTGGAATTTT+TGG + chr1_2:72400159-72400178 None:intergenic 35.0%
TCTTCAATGCACAACAACTT+AGG + chr1_2:72400175-72400194 None:intergenic 35.0%
TAAGTTGTTGTGCATTGAAG+AGG - chr1_2:72400174-72400193 Msa0090420:three_prime_UTR 35.0%
TAAGCAAGTTAAGGAAGAAG+GGG + chr1_2:72400271-72400290 None:intergenic 35.0%
GTAAGCAAGTTAAGGAAGAA+GGG + chr1_2:72400272-72400291 None:intergenic 35.0%
AGTAAGCAAGTTAAGGAAGA+AGG + chr1_2:72400273-72400292 None:intergenic 35.0%
ATGGGTAAGTAAGCAAGTTA+AGG + chr1_2:72400280-72400299 None:intergenic 35.0%
! TTGTTGGGGGTATAGTATAT+GGG + chr1_2:72400298-72400317 None:intergenic 35.0%
AAATTAGCTGATTGCGGAAT+TGG - chr1_2:72400726-72400745 Msa0090420:intron 35.0%
GAGGTTTATTGTCATTGAAG+AGG + chr1_2:72400892-72400911 None:intergenic 35.0%
AATTCTTACAAAACCGTCGA+CGG - chr1_2:72400930-72400949 Msa0090420:intron 35.0%
AGTGATGAACATGGATATTG+TGG + chr1_2:72401025-72401044 None:intergenic 35.0%
TGCAATAAGATAACGAGCAA+TGG + chr1_2:72401160-72401179 None:intergenic 35.0%
!! TATAGCATCGATTAAACCGT+CGG + chr1_2:72401183-72401202 None:intergenic 35.0%
CGGTTTAATCGATGCTATAA+TGG - chr1_2:72401184-72401203 Msa0090420:intron 35.0%
! CACGATGAAGTTATGCTTTT+AGG - chr1_2:72401248-72401267 Msa0090420:intron 35.0%
ATATAACCAAGTCTACAACG+TGG + chr1_2:72401359-72401378 None:intergenic 35.0%
TTACCCTGACTGTTAATAGT+AGG + chr1_2:72401443-72401462 None:intergenic 35.0%
AACCTCTTTAGCATTTGGAT+CGG + chr1_2:72401483-72401502 None:intergenic 35.0%
! ATATGCTTTTGTACTCGCAA+TGG - chr1_2:72401588-72401607 Msa0090420:intron 35.0%
TGAGATGCTAATGCTAATGA+TGG - chr1_2:72401624-72401643 Msa0090420:intron 35.0%
! ATGATAATGAATGGAGTGGT+TGG - chr1_2:72401678-72401697 Msa0090420:intron 35.0%
GAAGGGGATATAATGGTAAA+TGG - chr1_2:72401713-72401732 Msa0090420:intron 35.0%
GTTAATATAGGAGGAGGAAT+AGG - chr1_2:72401955-72401974 Msa0090420:intron 35.0%
CTAATGCCAGTTAATAAGAC+AGG + chr1_2:72402002-72402021 None:intergenic 35.0%
! ATAGTACTGTGAAAAGGTGT+AGG - chr1_2:72402241-72402260 Msa0090420:intron 35.0%
! TAGTACTGTGAAAAGGTGTA+GGG - chr1_2:72402242-72402261 Msa0090420:intron 35.0%
AAGTTTAGGAAACAGCAAGA+CGG + chr1_2:72402310-72402329 None:intergenic 35.0%
!! TCTTGCTGTTTCCTAAACTT+GGG - chr1_2:72402310-72402329 Msa0090420:intron 35.0%
TTTAGCACTAACCCAAGTTT+AGG + chr1_2:72402324-72402343 None:intergenic 35.0%
! ATGATGGTGTAAAACAAGGT+TGG - chr1_2:72402372-72402391 Msa0090420:intron 35.0%
AACAAAAAAAAGTGGCCGTT+GGG + chr1_2:72402510-72402529 None:intergenic 35.0%
TAACAAAAAAAAGTGGCCGT+TGG + chr1_2:72402511-72402530 None:intergenic 35.0%
TCACTCCCCACATAAAAAAA+GGG + chr1_2:72402581-72402600 None:intergenic 35.0%
TTCCAACAACACTATCCAAA+GGG + chr1_2:72402638-72402657 None:intergenic 35.0%
TCCTAACCATTTGCTTTATG+GGG + chr1_2:72402690-72402709 None:intergenic 35.0%
CTCCTAACCATTTGCTTTAT+GGG + chr1_2:72402691-72402710 None:intergenic 35.0%
!! TCTTAGCAGTTTTAGCCTTT+AGG - chr1_2:72402791-72402810 Msa0090420:intron 35.0%
!! GCCTTTAGGATTGAAATTGA+AGG - chr1_2:72402805-72402824 Msa0090420:intron 35.0%
! TGTAAGAACATTGGTTACAG+AGG + chr1_2:72402975-72402994 None:intergenic 35.0%
!! GCAAAAAAGGAGTGCTATAT+TGG - chr1_2:72403094-72403113 Msa0090420:intron 35.0%
TGATATACGATAGCTGATAG+TGG - chr1_2:72403223-72403242 Msa0090420:intron 35.0%
!! GATAGTGGATGAACGTATAA+TGG - chr1_2:72403238-72403257 Msa0090420:intron 35.0%
TTGTATAGACATGAGTGTGT+AGG - chr1_2:72403821-72403840 Msa0090420:intron 35.0%
TGTATAGACATGAGTGTGTA+GGG - chr1_2:72403822-72403841 Msa0090420:intron 35.0%
TGAGTGTGTAGGGATAAATT+AGG - chr1_2:72403832-72403851 Msa0090420:intron 35.0%
TAGGGATAAATTAGGAGACA+TGG - chr1_2:72403840-72403859 Msa0090420:intron 35.0%
AGATAAATCAGGAGAGAGAA+TGG - chr1_2:72403985-72404004 Msa0090420:intron 35.0%
! ATGGAGGAAAGATTTTCTCT+CGG - chr1_2:72404004-72404023 Msa0090420:intron 35.0%
CGCTAACTTTGATGAAATCA+CGG - chr1_2:72404086-72404105 Msa0090420:intron 35.0%
ATAAATCTGTTGGATACACG+AGG + chr1_2:72404295-72404314 None:intergenic 35.0%
AGAAAGCTCATTCCAAGATT+TGG + chr1_2:72404389-72404408 None:intergenic 35.0%
AGATCTGAATGTGTGTAAAC+AGG - chr1_2:72404415-72404434 Msa0090420:intron 35.0%
GATCTGAATGTGTGTAAACA+GGG - chr1_2:72404416-72404435 Msa0090420:intron 35.0%
TAGAAAAAGACTACGTTTCC+AGG - chr1_2:72404451-72404470 Msa0090420:intron 35.0%
AGAAAAAGACTACGTTTCCA+GGG - chr1_2:72404452-72404471 Msa0090420:intron 35.0%
AAACATCTGATCTGACGTAA+GGG + chr1_2:72404496-72404515 None:intergenic 35.0%
AAAACATCTGATCTGACGTA+AGG + chr1_2:72404497-72404516 None:intergenic 35.0%
! TTACGTCAGATCAGATGTTT+TGG - chr1_2:72404496-72404515 Msa0090420:intron 35.0%
ATTCTGATCCAATAGCAACT+TGG + chr1_2:72404843-72404862 None:intergenic 35.0%
! GTTGCTATTGGATCAGAATT+TGG - chr1_2:72404844-72404863 Msa0090420:CDS 35.0%
GGGACATTATTGGATCATAA+TGG - chr1_2:72404985-72405004 Msa0090420:intron 35.0%
AAAATGGACACCACTCAATA+GGG + chr1_2:72405161-72405180 None:intergenic 35.0%
TAAAATGGACACCACTCAAT+AGG + chr1_2:72405162-72405181 None:intergenic 35.0%
TAGCAACGTTAATTGGTTGA+GGG + chr1_2:72405495-72405514 None:intergenic 35.0%
ATAGCAACGTTAATTGGTTG+AGG + chr1_2:72405496-72405515 None:intergenic 35.0%
!!! TCAATTTTAGCTGACACAGA+TGG - chr1_2:72405594-72405613 Msa0090420:CDS 35.0%
ACTTCAATGAAGACTTGCAA+TGG + chr1_2:72405695-72405714 None:intergenic 35.0%
CAAGTCTTCATTGAAGTTGA+TGG - chr1_2:72405698-72405717 Msa0090420:CDS 35.0%
TTCTTTCTGATCTTGCACAA+GGG - chr1_2:72405721-72405740 Msa0090420:CDS 35.0%
!! CCTTTTTGTTTGGTAGACAT+GGG + chr1_2:72405989-72406008 None:intergenic 35.0%
!! TCCTTTTTGTTTGGTAGACA+TGG + chr1_2:72405990-72406009 None:intergenic 35.0%
TGTCTACCAAACAAAAAGGA+AGG - chr1_2:72405990-72406009 Msa0090420:CDS 35.0%
GAATTATTGAGCAGGGATAA+TGG - chr1_2:72406037-72406056 Msa0090420:intron 35.0%
CTATGATGATCTCACAATTG+GGG - chr1_2:72406307-72406326 Msa0090420:five_prime_UTR 35.0%
!! GGAATTTTTGGGAATTGGGT+TGG + chr1_2:72400147-72400166 None:intergenic 40.0%
! GTTGTTGGGGGTATAGTATA+TGG + chr1_2:72400299-72400318 None:intergenic 40.0%
!! TGAGAGGTGTTGTTGTTGTT+GGG + chr1_2:72400313-72400332 None:intergenic 40.0%
! GAGATAAGAAAGAGCACAAG+AGG + chr1_2:72400418-72400437 None:intergenic 40.0%
GACCAAGGCAATTGTTTAAC+CGG - chr1_2:72400648-72400667 Msa0090420:intron 40.0%
TTCCGGTTAAACAATTGCCT+TGG + chr1_2:72400653-72400672 None:intergenic 40.0%
CAATTGTTTAACCGGAAACC+CGG - chr1_2:72400656-72400675 Msa0090420:intron 40.0%
AGCTAATTTCTGACGGTTTG+CGG + chr1_2:72400715-72400734 None:intergenic 40.0%
CGCAATCAGCTAATTTCTGA+CGG + chr1_2:72400722-72400741 None:intergenic 40.0%
CGTCAGAAATTAGCTGATTG+CGG - chr1_2:72400720-72400739 Msa0090420:intron 40.0%
CGTATGTTAGTATTCCCTGA+GGG + chr1_2:72401053-72401072 None:intergenic 40.0%
! TGTAGGATTCAGAGGCATAT+CGG - chr1_2:72401088-72401107 Msa0090420:intron 40.0%
!! GGTGACGGAATATCAATCTT+CGG - chr1_2:72401113-72401132 Msa0090420:intron 40.0%
TCGTTATCTTATTGCACCGA+CGG - chr1_2:72401164-72401183 Msa0090420:intron 40.0%
GATAAATACAGTCCAGACAG+AGG - chr1_2:72401278-72401297 Msa0090420:intron 40.0%
GCGTTTAATCACTTTGGTGA+AGG - chr1_2:72401317-72401336 Msa0090420:intron 40.0%
CAGTGGGAAATGTATGCTAT+CGG - chr1_2:72401404-72401423 Msa0090420:intron 40.0%
TCTTTAGCATTTGGATCGGA+AGG + chr1_2:72401479-72401498 None:intergenic 40.0%
TTCCGATCCAAATGCTAAAG+AGG - chr1_2:72401478-72401497 Msa0090420:intron 40.0%
AGACGAACCTCTTTAGCATT+TGG + chr1_2:72401488-72401507 None:intergenic 40.0%
ATGAATGGAGTGGTTGGAAT+TGG - chr1_2:72401684-72401703 Msa0090420:intron 40.0%
!!! TTAATTTGCTCCGCGGATTT+TGG + chr1_2:72401803-72401822 None:intergenic 40.0%
ACCATGTACTCTGGTGTATT+CGG - chr1_2:72401830-72401849 Msa0090420:intron 40.0%
ACAGGTAATGTCCGTTGTTA+GGG + chr1_2:72401984-72402003 None:intergenic 40.0%
! ACATGGTGATGTTCAGTTGA+GGG - chr1_2:72402165-72402184 Msa0090420:intron 40.0%
!! GTCTTGCTGTTTCCTAAACT+TGG - chr1_2:72402309-72402328 Msa0090420:intron 40.0%
GTCACTCCCCACATAAAAAA+AGG + chr1_2:72402582-72402601 None:intergenic 40.0%
AACTTCGTTTAGATCCCCTT+TGG - chr1_2:72402620-72402639 Msa0090420:intron 40.0%
TCCAACAACACTATCCAAAG+GGG + chr1_2:72402637-72402656 None:intergenic 40.0%
CTTCCAACAACACTATCCAA+AGG + chr1_2:72402639-72402658 None:intergenic 40.0%
TTCATGCCCCATAAAGCAAA+TGG - chr1_2:72402681-72402700 Msa0090420:intron 40.0%
CCTCCTAACCATTTGCTTTA+TGG + chr1_2:72402692-72402711 None:intergenic 40.0%
CCATAAAGCAAATGGTTAGG+AGG - chr1_2:72402689-72402708 Msa0090420:intron 40.0%
!! AAAAGGAGTGCTATATTGGG+TGG - chr1_2:72403098-72403117 Msa0090420:intron 40.0%
!! AAAGGAGTGCTATATTGGGT+GGG - chr1_2:72403099-72403118 Msa0090420:intron 40.0%
CATGATAAGCTAGATACTGG+CGG - chr1_2:72403166-72403185 Msa0090420:intron 40.0%
AAAGAAGAGATGCATGTGTG+CGG - chr1_2:72403785-72403804 Msa0090420:intron 40.0%
! CATGTGTGCGGATTGTTATT+TGG - chr1_2:72403797-72403816 Msa0090420:intron 40.0%
GGATAAATTAGGAGACATGG+AGG - chr1_2:72403843-72403862 Msa0090420:intron 40.0%
TAAATCAGGAGAGAGAATGG+AGG - chr1_2:72403988-72404007 Msa0090420:intron 40.0%
! CGATGGGTTTGTCAAAATCA+TGG + chr1_2:72404119-72404138 None:intergenic 40.0%
AAAACCCAATTGAATGCGGA+TGG - chr1_2:72404264-72404283 Msa0090420:intron 40.0%
!! GTCAGATCAGATGTTTTGGA+GGG - chr1_2:72404500-72404519 Msa0090420:intron 40.0%
!!! AGATGTTTTGGAGGGTGTTA+TGG - chr1_2:72404508-72404527 Msa0090420:intron 40.0%
!!! GATGTTTTGGAGGGTGTTAT+GGG - chr1_2:72404509-72404528 Msa0090420:intron 40.0%
AATGGGTCCAAGAGGAAAAA+GGG + chr1_2:72404620-72404639 None:intergenic 40.0%
AAATGGGTCCAAGAGGAAAA+AGG + chr1_2:72404621-72404640 None:intergenic 40.0%
! TTACTTTCTCCCTGTTGCTT+TGG + chr1_2:72404736-72404755 None:intergenic 40.0%
AGTGTGAGCAAGTAACAAAG+GGG + chr1_2:72404879-72404898 None:intergenic 40.0%
CAGTGTGAGCAAGTAACAAA+GGG + chr1_2:72404880-72404899 None:intergenic 40.0%
ACAGTGTGAGCAAGTAACAA+AGG + chr1_2:72404881-72404900 None:intergenic 40.0%
GAAGTTTCAACCCTATTGAG+TGG - chr1_2:72405148-72405167 Msa0090420:CDS 40.0%
! TATCTCTACATTGGCTGCAA+AGG - chr1_2:72405185-72405204 Msa0090420:CDS 40.0%
! ACCAGGTTTTGCATGCTAAA+AGG - chr1_2:72405382-72405401 Msa0090420:intron 40.0%
TACTCGTCGTTATACACACA+CGG - chr1_2:72405443-72405462 Msa0090420:intron 40.0%
!! TTTTAGCTGACACAGATGGT+TGG - chr1_2:72405598-72405617 Msa0090420:CDS 40.0%
GTTCTTTCTGATCTTGCACA+AGG - chr1_2:72405720-72405739 Msa0090420:CDS 40.0%
!! ACGATGCTTCGATGTTTTGA+AGG - chr1_2:72405809-72405828 Msa0090420:CDS 40.0%
!! CGATGCTTCGATGTTTTGAA+GGG - chr1_2:72405810-72405829 Msa0090420:CDS 40.0%
GGACATTTGCTTCAAATCGA+AGG + chr1_2:72405904-72405923 None:intergenic 40.0%
CCCATGTCTACCAAACAAAA+AGG - chr1_2:72405986-72406005 Msa0090420:CDS 40.0%
GATATATATCCCGGGTTCAA+CGG - chr1_2:72406061-72406080 Msa0090420:intron 40.0%
TGCACAACAACTTAGGAAGC+TGG + chr1_2:72400168-72400187 None:intergenic 45.0%
TTAAGGAAGAAGGGGTTGAG+GGG + chr1_2:72400263-72400282 None:intergenic 45.0%
GTTAAGGAAGAAGGGGTTGA+GGG + chr1_2:72400264-72400283 None:intergenic 45.0%
AGTTAAGGAAGAAGGGGTTG+AGG + chr1_2:72400265-72400284 None:intergenic 45.0%
!! AGAGGTGTTGTTGTTGTTGG+GGG + chr1_2:72400311-72400330 None:intergenic 45.0%
!! GAGAGGTGTTGTTGTTGTTG+GGG + chr1_2:72400312-72400331 None:intergenic 45.0%
!! GTGAGAGGTGTTGTTGTTGT+TGG + chr1_2:72400314-72400333 None:intergenic 45.0%
TTCAGGGTAAGGATGTTGGT+GGG + chr1_2:72400471-72400490 None:intergenic 45.0%
GAACTGCTCTCAAAAGACCA+AGG - chr1_2:72400633-72400652 Msa0090420:intron 45.0%
!! GCTGATTGCGGAATTGGTTT+TGG - chr1_2:72400732-72400751 Msa0090420:intron 45.0%
! TTCCTGGAACTGGATTTGCT+GGG + chr1_2:72400821-72400840 None:intergenic 45.0%
GAGTGGTTCGTCTTGAATCA+CGG + chr1_2:72400856-72400875 None:intergenic 45.0%
TGATTCAAGACGAACCACTC+TGG - chr1_2:72400856-72400875 Msa0090420:intron 45.0%
GAGGAGAAGATTATCCAGAG+TGG + chr1_2:72400873-72400892 None:intergenic 45.0%
TGAAGATGAGTTCATGACGG+AGG + chr1_2:72400911-72400930 None:intergenic 45.0%
TGATTTGAACATTTGCGCCG+CGG + chr1_2:72400956-72400975 None:intergenic 45.0%
GGCGCAAATGTTCAAATCAC+CGG - chr1_2:72400957-72400976 Msa0090420:intron 45.0%
AATGTTCAAATCACCGGCCA+CGG - chr1_2:72400963-72400982 Msa0090420:intron 45.0%
AGGGTCTACAGTGATGAACA+TGG + chr1_2:72401034-72401053 None:intergenic 45.0%
TTCATCACTGTAGACCCTCA+GGG - chr1_2:72401036-72401055 Msa0090420:intron 45.0%
GCGTATGTTAGTATTCCCTG+AGG + chr1_2:72401054-72401073 None:intergenic 45.0%
TCTTCGGTTCACGTAACATC+TGG - chr1_2:72401129-72401148 Msa0090420:intron 45.0%
GTTACTTGCATTCCTCTGTC+TGG + chr1_2:72401293-72401312 None:intergenic 45.0%
AGAATGCCACGTTGTAGACT+TGG - chr1_2:72401350-72401369 Msa0090420:intron 45.0%
TGGGAAATGTATGCTATCGG+AGG - chr1_2:72401407-72401426 Msa0090420:intron 45.0%
! TGCTTTTGTACTCGCAATGG+TGG - chr1_2:72401591-72401610 Msa0090420:intron 45.0%
AATGGAGTGGTTGGAATTGG+AGG - chr1_2:72401687-72401706 Msa0090420:intron 45.0%
GAGCATTCTTTGTACCGTCA+GGG - chr1_2:72401735-72401754 Msa0090420:intron 45.0%
AGCATTCTTTGTACCGTCAG+GGG - chr1_2:72401736-72401755 Msa0090420:intron 45.0%
AAGTGTACAGCCAAAATCCG+CGG - chr1_2:72401790-72401809 Msa0090420:intron 45.0%
!! AAGCTGGTTAATTTGCTCCG+CGG + chr1_2:72401810-72401829 None:intergenic 45.0%
AACCAGCTTACCATGTACTC+TGG - chr1_2:72401821-72401840 Msa0090420:intron 45.0%
ACCGAATACACCAGAGTACA+TGG + chr1_2:72401834-72401853 None:intergenic 45.0%
GGAATAGGATGCCCTAACAA+CGG - chr1_2:72401970-72401989 Msa0090420:intron 45.0%
GACAGGTAATGTCCGTTGTT+AGG + chr1_2:72401985-72402004 None:intergenic 45.0%
! CACATGGTGATGTTCAGTTG+AGG - chr1_2:72402164-72402183 Msa0090420:intron 45.0%
AGTAGTGAATCAGGGGAAAG+TGG - chr1_2:72402425-72402444 Msa0090420:intron 45.0%
GTAGTGAATCAGGGGAAAGT+GGG - chr1_2:72402426-72402445 Msa0090420:intron 45.0%
TGCTTATGCACGTGATTGTG+AGG - chr1_2:72402460-72402479 Msa0090420:intron 45.0%
CACGTGATTGTGAGGTCATT+GGG - chr1_2:72402468-72402487 Msa0090420:intron 45.0%
! CATTGGGAATCTCTAGCTCA+TGG - chr1_2:72402484-72402503 Msa0090420:intron 45.0%
! GGGAGTGACCTGATTTTGAA+AGG - chr1_2:72402593-72402612 Msa0090420:intron 45.0%
TCCCCTTTGGATAGTGTTGT+TGG - chr1_2:72402633-72402652 Msa0090420:intron 45.0%
GCCCCATAAAGCAAATGGTT+AGG - chr1_2:72402686-72402705 Msa0090420:intron 45.0%
! AACAAGTCAAGGTTTAGGGC+TGG - chr1_2:72403047-72403066 Msa0090420:intron 45.0%
!! AAGGAGTGCTATATTGGGTG+GGG - chr1_2:72403100-72403119 Msa0090420:intron 45.0%
AATTAGGAGACATGGAGGTC+TGG - chr1_2:72403848-72403867 Msa0090420:intron 45.0%
ATTAGGAGACATGGAGGTCT+GGG - chr1_2:72403849-72403868 Msa0090420:intron 45.0%
AGGTCCATCCGCATTCAATT+GGG + chr1_2:72404271-72404290 None:intergenic 45.0%
TAGGTCCATCCGCATTCAAT+TGG + chr1_2:72404272-72404291 None:intergenic 45.0%
ATCTGTTGGATACACGAGGT+AGG + chr1_2:72404291-72404310 None:intergenic 45.0%
!! CGTCAGATCAGATGTTTTGG+AGG - chr1_2:72404499-72404518 Msa0090420:intron 45.0%
! TTGAGCACCCTTTTTCCTCT+TGG - chr1_2:72404610-72404629 Msa0090420:intron 45.0%
CAATCAGAAATGGGTCCAAG+AGG + chr1_2:72404628-72404647 None:intergenic 45.0%
GGACGAAAACCAAAGCAACA+GGG - chr1_2:72404724-72404743 Msa0090420:intron 45.0%
!! GTGAGCTGTGTGACTAGTTT+GGG + chr1_2:72404821-72404840 None:intergenic 45.0%
ACAGCTCACCAAGTTGCTAT+TGG - chr1_2:72404832-72404851 Msa0090420:CDS 45.0%
CCTAGAGAATAGCGGTTACT+TGG + chr1_2:72404962-72404981 None:intergenic 45.0%
CCAAGTAACCGCTATTCTCT+AGG - chr1_2:72404959-72404978 Msa0090420:intron 45.0%
!! TAACCGCTATTCTCTAGGAC+TGG - chr1_2:72404964-72404983 Msa0090420:intron 45.0%
!! AACCGCTATTCTCTAGGACT+GGG - chr1_2:72404965-72404984 Msa0090420:intron 45.0%
!! CTCTAGGACTGGGACATTAT+TGG - chr1_2:72404975-72404994 Msa0090420:intron 45.0%
! GCCTTTTAGCATGCAAAACC+TGG + chr1_2:72405386-72405405 None:intergenic 45.0%
GACGAGTAGGAAAAAGTGAG+TGG + chr1_2:72405431-72405450 None:intergenic 45.0%
GTGTGTGTATAACGACGAGT+AGG + chr1_2:72405444-72405463 None:intergenic 45.0%
CCAACAGCAAGGGTTACAAT+GGG - chr1_2:72406104-72406123 Msa0090420:intron 45.0%
AGCAAGGGTTACAATGGGAA+TGG - chr1_2:72406109-72406128 Msa0090420:intron 45.0%
GCAAGGGTTACAATGGGAAT+GGG - chr1_2:72406110-72406129 Msa0090420:intron 45.0%
CAAGGGTTACAATGGGAATG+GGG - chr1_2:72406111-72406130 Msa0090420:intron 45.0%
AAGGGTTACAATGGGAATGG+GGG - chr1_2:72406112-72406131 Msa0090420:CDS 45.0%
AATGACGATGGGGACTTCTT+TGG - chr1_2:72406142-72406161 Msa0090420:CDS 45.0%
ATGACGATGGGGACTTCTTT+GGG - chr1_2:72406143-72406162 Msa0090420:CDS 45.0%
TGATGATCTCACAATTGGGG+TGG - chr1_2:72406310-72406329 Msa0090420:five_prime_UTR 45.0%
GATGATCTCACAATTGGGGT+GGG - chr1_2:72406311-72406330 Msa0090420:five_prime_UTR 45.0%
!!! GGGGTTGAGGGGTTTTGTTT+TGG + chr1_2:72400252-72400271 None:intergenic 50.0%
! GTAAGGATGTTGGTGGGGTA+AGG + chr1_2:72400465-72400484 None:intergenic 50.0%
TCAGGGTAAGGATGTTGGTG+GGG + chr1_2:72400470-72400489 None:intergenic 50.0%
CTTCAGGGTAAGGATGTTGG+TGG + chr1_2:72400472-72400491 None:intergenic 50.0%
CAGCTTCAGGGTAAGGATGT+TGG + chr1_2:72400475-72400494 None:intergenic 50.0%
ACATCCTTACCCTGAAGCTG+TGG - chr1_2:72400475-72400494 Msa0090420:CDS 50.0%
TGAACCACAGCTTCAGGGTA+AGG + chr1_2:72400482-72400501 None:intergenic 50.0%
GTTCGTGAACCACAGCTTCA+GGG + chr1_2:72400487-72400506 None:intergenic 50.0%
AGTTCGTGAACCACAGCTTC+AGG + chr1_2:72400488-72400507 None:intergenic 50.0%
!! TGGATTTGCTGGGTCGTTGT+CGG + chr1_2:72400811-72400830 None:intergenic 50.0%
GTTCCTGGAACTGGATTTGC+TGG + chr1_2:72400822-72400841 None:intergenic 50.0%
ATTGGAGTGTGATGCAACCG+TGG + chr1_2:72400983-72401002 None:intergenic 50.0%
GTTCATCACTGTAGACCCTC+AGG - chr1_2:72401035-72401054 Msa0090420:intron 50.0%
CCTCTGAATCCTACATGCGT+TGG + chr1_2:72401083-72401102 None:intergenic 50.0%
CCAACGCATGTAGGATTCAG+AGG - chr1_2:72401080-72401099 Msa0090420:intron 50.0%
! GGATTCAGAGGCATATCGGA+CGG - chr1_2:72401092-72401111 Msa0090420:intron 50.0%
GATCGGAAGGAGCTGTGTAA+CGG + chr1_2:72401466-72401485 None:intergenic 50.0%
!!! TTTTCAGGTGACAAAGCGCG+TGG - chr1_2:72401649-72401668 Msa0090420:intron 50.0%
GAGTGGTTGGAATTGGAGGA+CGG - chr1_2:72401691-72401710 Msa0090420:intron 50.0%
GTTGGAATTGGAGGACGGAA+GGG - chr1_2:72401696-72401715 Msa0090420:intron 50.0%
TTGGAATTGGAGGACGGAAG+GGG - chr1_2:72401697-72401716 Msa0090420:intron 50.0%
GAGGACGGAAGGGGATATAA+TGG - chr1_2:72401706-72401725 Msa0090420:intron 50.0%
! GGAGCATTCTTTGTACCGTC+AGG - chr1_2:72401734-72401753 Msa0090420:intron 50.0%
ATTCTTTGTACCGTCAGGGG+TGG - chr1_2:72401739-72401758 Msa0090420:intron 50.0%
TTCTTTGTACCGTCAGGGGT+GGG - chr1_2:72401740-72401759 Msa0090420:intron 50.0%
CACCAGAGTACATGGTAAGC+TGG + chr1_2:72401826-72401845 None:intergenic 50.0%
TACTCCCTTCTCTGACCACA+TGG - chr1_2:72402091-72402110 Msa0090420:intron 50.0%
AGGACCATGTGGTCAGAGAA+GGG + chr1_2:72402098-72402117 None:intergenic 50.0%
TAGGACCATGTGGTCAGAGA+AGG + chr1_2:72402099-72402118 None:intergenic 50.0%
TGTAGGACACTAGGACCATG+TGG + chr1_2:72402109-72402128 None:intergenic 50.0%
TGATGTTCAGTTGAGGGACG+CGG - chr1_2:72402171-72402190 Msa0090420:intron 50.0%
GCACGTGATTGTGAGGTCAT+TGG - chr1_2:72402467-72402486 Msa0090420:intron 50.0%
! ATCTCTAGCTCATGGCCCAA+CGG - chr1_2:72402492-72402511 Msa0090420:intron 50.0%
TTAGGAGACATGGAGGTCTG+GGG - chr1_2:72403850-72403869 Msa0090420:intron 50.0%
GAGCTGAGTAGAGAGAGGAA+AGG - chr1_2:72403872-72403891 Msa0090420:intron 50.0%
GTTTCCAGGGTAGAGTGACA+AGG - chr1_2:72404465-72404484 Msa0090420:intron 50.0%
ATCTGATCTGACGTAAGGGC+AGG + chr1_2:72404492-72404511 None:intergenic 50.0%
TGCTTTCCAGCAAGTAAGCG+TGG - chr1_2:72404563-72404582 Msa0090420:intron 50.0%
GCTTTCCAGCAAGTAAGCGT+GGG - chr1_2:72404564-72404583 Msa0090420:intron 50.0%
GGGACGAAAACCAAAGCAAC+AGG - chr1_2:72404723-72404742 Msa0090420:intron 50.0%
! GGTGAGCTGTGTGACTAGTT+TGG + chr1_2:72404822-72404841 None:intergenic 50.0%
GTCCCAGTCCTAGAGAATAG+CGG + chr1_2:72404970-72404989 None:intergenic 50.0%
GTACCTACTGGTCAGTAGAG+TGG - chr1_2:72405066-72405085 Msa0090420:intron 50.0%
TCACCACTCTACTGACCAGT+AGG + chr1_2:72405072-72405091 None:intergenic 50.0%
AACTTTAACCCCAGCCACAG+CGG + chr1_2:72405638-72405657 None:intergenic 50.0%
CTGTGGCTGGGGTTAAAGTT+CGG - chr1_2:72405638-72405657 Msa0090420:CDS 50.0%
ATATATCCCGGGTTCAACGG+TGG - chr1_2:72406064-72406083 Msa0090420:intron 50.0%
GCCAACAGCAAGGGTTACAA+TGG - chr1_2:72406103-72406122 Msa0090420:intron 50.0%
! CCCATTGTAACCCTTGCTGT+TGG + chr1_2:72406107-72406126 None:intergenic 50.0%
AGGGTTACAATGGGAATGGG+GGG - chr1_2:72406113-72406132 Msa0090420:CDS 50.0%
! GATGATGAGTAGGGTGCTAG+CGG + chr1_2:72406202-72406221 None:intergenic 50.0%
TTGGTGGGGTAAGGTGAGGT+TGG + chr1_2:72400456-72400475 None:intergenic 55.0%
! GATGTTGGTGGGGTAAGGTG+AGG + chr1_2:72400460-72400479 None:intergenic 55.0%
GCAATCGTCTACCGGGTTTC+CGG + chr1_2:72400670-72400689 None:intergenic 55.0%
GAAACCCGGTAGACGATTGC+TGG - chr1_2:72400670-72400689 Msa0090420:intron 55.0%
ATCGCCAGCAATCGTCTACC+GGG + chr1_2:72400677-72400696 None:intergenic 55.0%
CATCGCCAGCAATCGTCTAC+CGG + chr1_2:72400678-72400697 None:intergenic 55.0%
GACGGTTTGCGGACCAGTTT+GGG + chr1_2:72400704-72400723 None:intergenic 55.0%
TGACGGTTTGCGGACCAGTT+TGG + chr1_2:72400705-72400724 None:intergenic 55.0%
ACCTCCTTTACCTCCCATGG+CGG + chr1_2:72400763-72400782 None:intergenic 55.0%
CTGACCTCCTTTACCTCCCA+TGG + chr1_2:72400766-72400785 None:intergenic 55.0%
! ATTTGCTGGGTCGTTGTCGG+AGG + chr1_2:72400808-72400827 None:intergenic 55.0%
GACCCAGCAAATCCAGTTCC+AGG - chr1_2:72400816-72400835 Msa0090420:intron 55.0%
! TGACGGAGTGTTCCTGGAAC+TGG + chr1_2:72400831-72400850 None:intergenic 55.0%
CGTCTTGAATCACGGCGTGA+CGG + chr1_2:72400848-72400867 None:intergenic 55.0%
! AGAGGCATATCGGACGGTGA+CGG - chr1_2:72401098-72401117 Msa0090420:intron 55.0%
GGTTGGAATTGGAGGACGGA+AGG - chr1_2:72401695-72401714 Msa0090420:intron 55.0%
TCTTTGTACCGTCAGGGGTG+GGG - chr1_2:72401741-72401760 Msa0090420:intron 55.0%
GGGGATGAGTGCTCAGTATG+CGG - chr1_2:72401760-72401779 Msa0090420:intron 55.0%
GATGAGTGCTCAGTATGCGG+AGG - chr1_2:72401763-72401782 Msa0090420:intron 55.0%
! CTGGTGTATTCGGTGATCCC+AGG - chr1_2:72401840-72401859 Msa0090420:intron 55.0%
AGGTCCTTGTCACTCTACCC+TGG + chr1_2:72404472-72404491 None:intergenic 55.0%
AAGGTCCCACGCTTACTTGC+TGG + chr1_2:72404572-72404591 None:intergenic 55.0%
ACCTTCTGTTCAACCCGCTG+TGG - chr1_2:72405621-72405640 Msa0090420:CDS 55.0%
ACTTTAACCCCAGCCACAGC+GGG + chr1_2:72405637-72405656 None:intergenic 55.0%
ACGACAGGAGCCAACAGCAA+GGG - chr1_2:72406094-72406113 Msa0090420:intron 55.0%
GAAGTCCCCATCGTCATTGC+TGG + chr1_2:72406140-72406159 None:intergenic 55.0%
TACAAAACCGTCGACGGCCG+CGG - chr1_2:72400936-72400955 Msa0090420:intron 60.0%
GAGTGTGATGCAACCGTGGC+CGG + chr1_2:72400979-72400998 None:intergenic 60.0%
CTGGGGAGCTGAGTAGAGAG+AGG - chr1_2:72403867-72403886 Msa0090420:intron 60.0%
!! GCCACAGCGGGTTGAACAGA+AGG + chr1_2:72405625-72405644 None:intergenic 60.0%
TCTGTTCAACCCGCTGTGGC+TGG - chr1_2:72405625-72405644 Msa0090420:CDS 60.0%
CTGTTCAACCCGCTGTGGCT+GGG - chr1_2:72405626-72405645 Msa0090420:CDS 60.0%
TGTTCAACCCGCTGTGGCTG+GGG - chr1_2:72405627-72405646 Msa0090420:CDS 60.0%
TATCCCGGGTTCAACGGTGG+TGG - chr1_2:72406067-72406086 Msa0090420:intron 60.0%
ATCCCGGGTTCAACGGTGGT+GGG - chr1_2:72406068-72406087 Msa0090420:intron 60.0%
!! CTTGCTGTTGGCTCCTGTCG+TGG + chr1_2:72406095-72406114 None:intergenic 60.0%
CACGACAGGAGCCAACAGCA+AGG - chr1_2:72406093-72406112 Msa0090420:intron 60.0%
GGGGGTCCAGCAATGACGAT+GGG - chr1_2:72406131-72406150 Msa0090420:CDS 60.0%
GGGGTCCAGCAATGACGATG+GGG - chr1_2:72406132-72406151 Msa0090420:CDS 60.0%
GCTGGCGATGCGACCCAAAC+TGG - chr1_2:72400688-72400707 Msa0090420:intron 65.0%
!!! TGGTTTTGGTCGCGCCGCCA+TGG - chr1_2:72400746-72400765 Msa0090420:intron 65.0%
!! GGTTTTGGTCGCGCCGCCAT+GGG - chr1_2:72400747-72400766 Msa0090420:intron 65.0%
GCCGCCATGGGAGGTAAAGG+AGG - chr1_2:72400759-72400778 Msa0090420:intron 65.0%
! ACGGCGTGACGGAGTGTTCC+TGG + chr1_2:72400837-72400856 None:intergenic 65.0%
CGCGCGAGTCCAACGCATGT+AGG - chr1_2:72401071-72401090 Msa0090420:intron 65.0%
! GTACTCGCAATGGTGGCGCG+TGG - chr1_2:72401598-72401617 Msa0090420:intron 65.0%
GCACTCATCCCCACCCCTGA+CGG + chr1_2:72401752-72401771 None:intergenic 65.0%
GTCCCACCACCGTTGAACCC+GGG + chr1_2:72406073-72406092 None:intergenic 65.0%
GGTCCCACCACCGTTGAACC+CGG + chr1_2:72406074-72406093 None:intergenic 65.0%
!! AACGGTGGTGGGACCACGAC+AGG - chr1_2:72406079-72406098 Msa0090420:intron 65.0%
GGGGGGTCCAGCAATGACGA+TGG - chr1_2:72406130-72406149 Msa0090420:CDS 65.0%
!! TAGCGGTGCTGCTTGGCTGC+TGG + chr1_2:72406185-72406204 None:intergenic 65.0%
!! AGGGTGCTAGCGGTGCTGCT+TGG + chr1_2:72406192-72406211 None:intergenic 65.0%
TTTGGTCGCGCCGCCATGGG+AGG - chr1_2:72400750-72400769 Msa0090420:intron 70.0%
CGCGCCGCCATGGGAGGTAA+AGG - chr1_2:72400756-72400775 Msa0090420:intron 70.0%
ATTTGCGCCGCGGCCGTCGA+CGG + chr1_2:72400946-72400965 None:intergenic 70.0%
! CTCGCAATGGTGGCGCGTGG+AGG - chr1_2:72401601-72401620 Msa0090420:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72400142 72406483 72400142 ID=Msa0090420;Name=Msa0090420
chr1_2 mRNA 72400142 72406483 72400142 ID=Msa0090420-mRNA-1;Parent=Msa0090420;Name=Msa0090420-mRNA-1;_AED=0.16;_eAED=0.16;_QI=241|0.75|0.6|1|1|1|5|171|373
chr1_2 exon 72400142 72400574 72400142 ID=Msa0090420-mRNA-1:exon:25174;Parent=Msa0090420-mRNA-1
chr1_2 exon 72404764 72404969 72404764 ID=Msa0090420-mRNA-1:exon:25173;Parent=Msa0090420-mRNA-1
chr1_2 exon 72405126 72405218 72405126 ID=Msa0090420-mRNA-1:exon:25172;Parent=Msa0090420-mRNA-1
chr1_2 exon 72405591 72406020 72405591 ID=Msa0090420-mRNA-1:exon:25171;Parent=Msa0090420-mRNA-1
chr1_2 exon 72406112 72406483 72406112 ID=Msa0090420-mRNA-1:exon:25170;Parent=Msa0090420-mRNA-1
chr1_2 five_prime_UTR 72406243 72406483 72406243 ID=Msa0090420-mRNA-1:five_prime_utr;Parent=Msa0090420-mRNA-1
chr1_2 CDS 72406112 72406242 72406112 ID=Msa0090420-mRNA-1:cds;Parent=Msa0090420-mRNA-1
chr1_2 CDS 72405591 72406020 72405591 ID=Msa0090420-mRNA-1:cds;Parent=Msa0090420-mRNA-1
chr1_2 CDS 72405126 72405218 72405126 ID=Msa0090420-mRNA-1:cds;Parent=Msa0090420-mRNA-1
chr1_2 CDS 72404764 72404969 72404764 ID=Msa0090420-mRNA-1:cds;Parent=Msa0090420-mRNA-1
chr1_2 CDS 72400313 72400574 72400313 ID=Msa0090420-mRNA-1:cds;Parent=Msa0090420-mRNA-1
chr1_2 three_prime_UTR 72400142 72400312 72400142 ID=Msa0090420-mRNA-1:three_prime_utr;Parent=Msa0090420-mRNA-1
Gene Sequence

>Msa0090420

ATGCTTCCTATGAGCTGCATTCTTTTAATGTGCCTCTTGTGCTCTTTCTTATCTCAAATCAAAGCTTTCTCCAACCTCACCTTACCCCACCAACATCCTTACCCTGAAGCTGTGGTTCACGAACTTCATCAGAAAATCAATGTGTCATTTTCTAGAAGGGAACTGCTCTCAAAAGACCAAGGCAATTGTTTAACCGGAAACCCGGTAGACGATTGCTGGCGATGCGACCCAAACTGGTCCGCAAACCGTCAGAAATTAGCTGATTGCGGAATTGGTTTTGGTCGCGCCGCCATGGGAGGTAAAGGAGGTCAGATCTACATAGTGACAGATTCCTCCGACAACGACCCAGCAAATCCAGTTCCAGGAACACTCCGTCACGCCGTGATTCAAGACGAACCACTCTGGATAATCTTCTCCTCTTCAATGACAATAAACCTCCGTCATGAACTCATCTTCAATTCTTACAAAACCGTCGACGGCCGCGGCGCAAATGTTCAAATCACCGGCCACGGTTGCATCACACTCCAATACATCTCAAACGTGATAATCCACAATATCCATTGGGAAATGTATGCTATCGGAGGTAGTGCTAATCCTACTATTAACAGTCAGGGTAACCGTTACACAGCTCCTTCCGATCCAAATGCTAAAGAGGTGACAAAGCGCGTGGATACAAATGATAATGAATGGAGTGGTTGGAATTGGAGGACGGAAGGGGATATAATGGTAAATGGAGCATTCTTTGTACCGTCAGGGGTGGGGATGAGTGCTCAGTATGCGGAGGCGTCAAGTGTACAGCCAAAATCCGCGGAGCAAATTAACCAGCTTACCATGTACTCTGGTGTATTCGGTGATCCCAGGGATAATGGAGATATATATCCCGGGTTCAACGGTGGTGGGACCACGACAGGAGCCAACAGCAAGGGTTACAATGGGAATGGGGGGTCCAGCAATGACGATGGGGACTTCTTTGGGATGATATTCAAAGGTACCAGCAGCCAAGCAGCACCGCTAGCACCCTACTCATCATCAATTGTATTTGTTTCAACTTTTTTGTCTCTTTTAATTATTTTCAATTTGGACATTATCACCAACTATGATATTCTATTATCATTACTATGA
Protein sequence

>Msa0090420

MLPMSCILLMCLLCSFLSQIKAFSNLTLPHQHPYPEAVVHELHQKINVSFSRRELLSKDQGNCLTGNPVDDCWRCDPNWSANRQKLADCGIGFGRAAMGGKGGQIYIVTDSSDNDPANPVPGTLRHAVIQDEPLWIIFSSSMTINLRHELIFNSYKTVDGRGANVQITGHGCITLQYISNVIIHNIHWEMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVDTNDNEWSGWNWRTEGDIMVNGAFFVPSGVGMSAQYAEASSVQPKSAEQINQLTMYSGVFGDPRDNGDIYPGFNGGGTTTGANSKGYNGNGGSSNDDGDFFGMIFKGTSSQAAPLAPYSSSIVFVSTFLSLLIIFNLDIITNYDILLSLL*