AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0558720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558720 MtrunA17_Chr8g0384431 94.794 826 26 1 1 826 1 809 0.0 1620
Msa0558720 MtrunA17_Chr3g0130381 72.960 821 186 8 1 818 1 788 0.0 1227
Msa0558720 MtrunA17_Chr3g0125511 56.865 823 283 9 1 819 1 755 0.0 949
Msa0558720 MtrunA17_Chr8g0372471 55.154 747 287 10 77 808 179 892 0.0 832
Msa0558720 MtrunA17_Chr5g0437501 53.005 549 238 5 270 811 75 610 0.0 624
Msa0558720 MtrunA17_Chr3g0113981 54.981 522 220 5 287 808 164 670 0.0 608
Msa0558720 MtrunA17_Chr1g0155141 50.000 528 242 5 283 808 194 701 0.0 590
Msa0558720 MtrunA17_Chr1g0159741 48.221 506 242 9 288 785 141 634 8.45e-165 493
Msa0558720 MtrunA17_Chr5g0404771 47.568 555 229 9 21 528 20 559 8.14e-164 488
Msa0558720 MtrunA17_Chr3g0112341 44.404 554 279 11 252 789 107 647 8.82e-164 491
Msa0558720 MtrunA17_Chr1g0183721 44.796 538 253 14 298 810 71 589 5.90e-148 447
Msa0558720 MtrunA17_Chr5g0435751 42.058 554 275 12 249 789 79 599 1.07e-146 445
Msa0558720 MtrunA17_Chr1g0167381 44.465 533 262 13 298 810 101 619 1.95e-146 444
Msa0558720 MtrunA17_Chr1g0187601 42.722 529 269 13 298 806 100 614 2.19e-140 429
Msa0558720 MtrunA17_Chr8g0350351 41.794 524 270 14 298 806 97 600 3.02e-139 425
Msa0558720 MtrunA17_Chr5g0404761 63.251 283 100 2 531 813 1 279 1.53e-138 411
Msa0558720 MtrunA17_Chr7g0246681 40.909 528 271 14 298 807 84 588 1.31e-137 421
Msa0558720 MtrunA17_Chr4g0055031 42.301 539 270 15 288 806 86 603 8.25e-134 411
Msa0558720 MtrunA17_Chr6g0472571 42.300 513 256 18 298 790 114 606 1.95e-132 409
Msa0558720 MtrunA17_Chr8g0369481 40.643 529 275 13 298 806 79 588 1.11e-129 400
Msa0558720 MtrunA17_Chr8g0388881 40.335 538 281 18 291 806 101 620 3.51e-129 400
Msa0558720 MtrunA17_Chr7g0214551 40.884 543 285 12 260 786 22 544 3.40e-128 395
Msa0558720 MtrunA17_Chr5g0409411 40.323 558 293 14 275 809 53 593 1.30e-127 395
Msa0558720 MtrunA17_Chr8g0361791 41.487 511 266 14 298 794 93 584 1.61e-127 395
Msa0558720 MtrunA17_Chr1g0203741 39.706 544 290 16 262 786 69 593 1.40e-126 393
Msa0558720 MtrunA17_Chr7g0246701 40.613 522 270 17 290 790 103 605 1.04e-124 389
Msa0558720 MtrunA17_Chr8g0350391 39.706 544 276 20 298 810 114 636 1.30e-123 385
Msa0558720 MtrunA17_Chr3g0092501 40.918 523 270 14 298 806 94 591 1.44e-123 384
Msa0558720 MtrunA17_Chr5g0416991 40.875 526 275 13 298 806 93 599 1.77e-123 384
Msa0558720 MtrunA17_Chr1g0171781 40.571 525 280 14 298 806 95 603 4.61e-122 380
Msa0558720 MtrunA17_Chr5g0426281 32.824 524 296 14 301 790 151 652 9.47e-85 284
Msa0558720 MtrunA17_Chr3g0115931 33.208 533 291 17 298 790 163 670 8.69e-84 282
Msa0558720 MtrunA17_Chr4g0043131 50.735 136 61 3 664 796 36 168 4.04e-38 140
Msa0558720 MtrunA17_Chr4g0043121 28.662 314 197 10 298 596 95 396 6.02e-36 141
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558720 AT5G64030.1 64.405 840 267 8 1 819 1 829 0.0 1127
Msa0558720 AT1G29470.1 60.341 822 271 14 1 819 1 770 0.0 1001
Msa0558720 AT1G29470.2 60.341 822 271 14 1 819 1 770 0.0 1001
Msa0558720 AT2G34300.2 58.637 822 285 11 1 819 1 770 0.0 984
Msa0558720 AT2G34300.3 58.637 822 285 11 1 819 1 770 0.0 984
Msa0558720 AT2G34300.1 58.637 822 285 11 1 819 1 770 0.0 984
Msa0558720 AT3G51070.1 53.631 895 324 12 1 808 1 891 0.0 965
Msa0558720 AT3G51070.2 53.782 833 294 12 1 746 1 829 0.0 890
Msa0558720 AT2G40280.1 54.735 528 220 6 286 812 78 587 0.0 620
Msa0558720 AT3G56080.1 53.704 540 228 7 273 808 89 610 0.0 612
Msa0558720 AT1G19430.1 49.333 525 245 6 286 808 219 724 0.0 577
Msa0558720 AT1G19430.3 49.333 525 245 6 286 808 219 724 0.0 577
Msa0558720 AT3G56080.2 55.042 476 196 6 273 744 89 550 0.0 559
Msa0558720 AT5G06050.1 44.425 565 277 14 252 794 99 648 3.65e-169 506
Msa0558720 AT1G77260.1 44.186 559 283 10 243 785 86 631 2.51e-163 489
Msa0558720 AT2G39750.1 45.009 531 270 11 265 789 157 671 7.85e-163 489
Msa0558720 AT3G23300.2 43.609 532 267 14 298 810 88 605 1.42e-142 434
Msa0558720 AT3G23300.1 43.609 532 267 14 298 810 88 605 1.42e-142 434
Msa0558720 AT4G14360.1 43.045 532 270 14 298 810 85 602 8.96e-142 432
Msa0558720 AT4G14360.2 43.045 532 270 14 298 810 85 602 8.96e-142 432
Msa0558720 AT5G14430.1 46.733 505 236 13 298 786 89 576 3.08e-140 428
Msa0558720 AT1G04430.1 42.778 540 263 17 300 810 95 617 5.80e-139 426
Msa0558720 AT1G04430.3 42.778 540 263 17 300 810 95 617 5.80e-139 426
Msa0558720 AT1G04430.2 42.778 540 263 17 300 810 95 617 5.80e-139 426
Msa0558720 AT5G14430.2 46.139 505 239 13 298 786 89 576 5.64e-138 422
Msa0558720 AT4G00740.1 39.885 524 280 11 299 807 91 594 2.03e-137 421
Msa0558720 AT4G00740.2 39.885 524 280 11 299 807 91 594 2.03e-137 421
Msa0558720 AT1G31850.1 41.541 532 268 13 298 806 85 596 2.01e-134 413
Msa0558720 AT1G31850.2 41.541 532 268 13 298 806 85 596 2.01e-134 413
Msa0558720 AT1G31850.4 41.541 532 268 13 298 806 85 596 2.01e-134 413
Msa0558720 AT1G31850.3 41.541 532 268 13 298 806 85 596 2.01e-134 413
Msa0558720 AT5G04060.1 43.264 527 260 13 298 806 92 597 7.63e-133 409
Msa0558720 AT4G19120.1 41.495 535 264 13 298 806 79 590 1.81e-132 408
Msa0558720 AT4G19120.2 41.495 535 264 13 298 806 79 590 1.81e-132 408
Msa0558720 AT1G33170.1 41.808 531 272 14 298 806 119 634 5.33e-131 405
Msa0558720 AT4G10440.1 41.061 509 270 12 298 790 102 596 2.73e-130 403
Msa0558720 AT1G26850.2 41.634 514 267 15 298 794 95 592 5.12e-130 402
Msa0558720 AT1G26850.1 41.634 514 267 15 298 794 95 592 5.12e-130 402
Msa0558720 AT3G10200.1 42.659 504 255 12 298 787 81 564 8.25e-129 398
Msa0558720 AT1G19430.2 44.444 396 200 5 286 680 219 595 1.00e-126 393
Msa0558720 AT2G45750.1 40.698 516 267 17 298 790 96 595 3.60e-125 390
Msa0558720 AT4G18030.1 40.850 541 278 15 287 806 84 603 3.68e-124 387
Msa0558720 AT4G00750.1 42.394 493 245 17 320 789 125 601 4.55e-123 384
Msa0558720 AT2G43200.2 40.945 508 267 14 298 789 100 590 4.42e-122 381
Msa0558720 AT2G43200.1 40.945 508 267 14 298 789 100 590 4.42e-122 381
Msa0558720 AT3G10200.2 43.035 481 240 12 298 764 81 541 9.30e-122 380
Msa0558720 AT4G19120.3 41.667 444 213 12 298 718 79 499 2.91e-103 328
Msa0558720 AT1G26850.3 40.241 415 216 14 298 696 95 493 2.80e-88 289
Msa0558720 AT1G78240.1 31.099 537 309 16 291 790 149 661 3.51e-83 280
Msa0558720 AT1G78240.2 31.099 537 309 16 291 790 149 661 3.51e-83 280
Msa0558720 AT1G13860.4 32.477 545 301 15 298 807 90 602 8.13e-78 264
Msa0558720 AT1G13860.3 32.477 545 301 15 298 807 90 602 8.13e-78 264
Msa0558720 AT1G13860.1 32.477 545 301 15 298 807 90 602 8.13e-78 264
Msa0558720 AT1G13860.5 32.477 545 301 15 298 807 90 602 8.13e-78 264
Msa0558720 AT1G13860.2 34.762 420 231 11 413 807 45 446 1.46e-70 239
Msa0558720 AT2G03480.1 32.270 533 306 17 299 803 96 601 4.16e-69 240
Msa0558720 AT2G03480.2 32.700 526 302 16 299 803 96 590 5.18e-69 239
Msa0558720 AT2G03480.3 31.660 259 162 7 299 544 96 352 3.81e-32 130

Find 254 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCTGAAGTTGGAGTTTA+TGG 0.092408 4_1:-57741320 Msa0558720:CDS
GGTGATTTGCTCAGTCTTTC+TGG 0.096552 4_1:+57741356 None:intergenic
CGATTTCTCTTCCTGCTTTC+CGG 0.102196 4_1:+57743785 None:intergenic
TTGTACCTTCTCTCTGCTTT+TGG 0.173033 4_1:+57743059 None:intergenic
TCTAATGAGCTACTCCCTTC+TGG 0.179725 4_1:-57743381 Msa0558720:CDS
CTTTGAGGGATTTGAAAATT+TGG 0.180019 4_1:-57741058 Msa0558720:CDS
GTGTCCAAGTCTTATCTAAA+TGG 0.222273 4_1:-57741245 Msa0558720:CDS
GATGTCTTCTTGTTCTGATT+TGG 0.232136 4_1:+57743708 None:intergenic
TATACGAAAGATGATGATTT+TGG 0.244828 4_1:+57744957 None:intergenic
TCCTGCTTTCCGGGCATAAC+AGG 0.246833 4_1:+57743795 None:intergenic
GATTTCTCTTCCTGCTTTCC+GGG 0.249825 4_1:+57743786 None:intergenic
TGAGCTTCATGTTCATCTTT+TGG 0.251202 4_1:+57742262 None:intergenic
AGGAATTCTGATCACATTCT+TGG 0.266568 4_1:-57740307 Msa0558720:three_prime_UTR
AGATCTGCTTCTTTCATAAT+AGG 0.272763 4_1:-57744817 Msa0558720:intron
TTTGGTGGGGTAAAGTTGAT+AGG 0.277208 4_1:+57744975 None:intergenic
CTGTAACTTTCACCCAATTC+TGG 0.287508 4_1:+57742909 None:intergenic
CAAGCTCTCCAGCTCCTTAA+TGG 0.288378 4_1:+57740682 None:intergenic
CAAACAAACACGTGTGATAT+TGG 0.295996 4_1:-57742356 Msa0558720:CDS
AGACCACGTTCATAAATAAT+TGG 0.297024 4_1:+57740996 None:intergenic
GGGAATGGGGCAATGGGTTA+AGG 0.300574 4_1:+57745047 None:intergenic
AATACAAGGGGCACCAGAAT+TGG 0.314022 4_1:-57742922 Msa0558720:CDS
TGAGAAATGAAATCTTGAAT+TGG 0.314158 4_1:+57744909 None:intergenic
ACATATAGAAGGCTCATTCT+TGG 0.315163 4_1:+57741592 None:intergenic
TTTGAGGGATTTGAAAATTT+GGG 0.322072 4_1:-57741057 Msa0558720:CDS
GACTTACACTAAAGATTTGC+AGG 0.324033 4_1:-57740630 Msa0558720:CDS
TAGGCCGCCACATGGACTTC+TGG 0.327048 4_1:+57740594 None:intergenic
TGTTTGCCCCAGGCAATATC+AGG 0.327849 4_1:+57742373 None:intergenic
GTTCCATATTTCTACATCTT+CGG 0.333336 4_1:+57741824 None:intergenic
TAATGATACATAACGAATAA+TGG 0.337904 4_1:+57740429 None:intergenic
ATCCTCCTTGGTAGCTTCCT+CGG 0.338678 4_1:+57743845 None:intergenic
GAAGCGCACCGTGTTTGAAT+TGG 0.339301 4_1:+57742855 None:intergenic
GAACGAACGAAGAAAGAAAA+AGG 0.343097 4_1:+57744885 None:intergenic
ATGGACATGAGATCAGTTTA+TGG 0.344407 4_1:-57741188 Msa0558720:CDS
ATGATTGATAGTTGAGGTTC+TGG 0.346250 4_1:-57740267 Msa0558720:three_prime_UTR
CAGAATTGGGTGAAAGTTAC+AGG 0.346425 4_1:-57742908 Msa0558720:CDS
TTCCATATTTCTACATCTTC+GGG 0.348032 4_1:+57741825 None:intergenic
GACTGAGCAAATCACCTTAC+TGG 0.348700 4_1:-57741349 Msa0558720:CDS
CTAATGAGCTACTCCCTTCT+GGG 0.351886 4_1:-57743380 Msa0558720:CDS
CTCTATGCTTGGTTGGGCTA+TGG 0.353786 4_1:-57744013 Msa0558720:CDS
TCGGGCAGCTTCTGATAAAT+AGG 0.357067 4_1:+57741843 None:intergenic
GACCTGGTGGTTTCTTTGTA+TGG 0.360085 4_1:-57741875 Msa0558720:CDS
AGTCTTTCTGGCCACTCCCC+TGG 0.363157 4_1:+57741368 None:intergenic
CTGTAGTTGCCGAGGTTGAT+AGG 0.364325 4_1:-57740751 Msa0558720:CDS
CCACGTTCTGTCGAACTAAC+TGG 0.372630 4_1:+57741401 None:intergenic
ATTTATGAACGTGGTCTGTT+TGG 0.379065 4_1:-57740990 Msa0558720:CDS
GATGACATCGTCTGTAGTTC+CGG 0.379624 4_1:-57743988 Msa0558720:CDS
AATGAAACTACAACTCAAAC+TGG 0.386627 4_1:-57743339 Msa0558720:CDS
ACAAAACTAATACCAAGTTT+TGG 0.386714 4_1:+57740224 None:intergenic
ATTGGGCGTTTATATCCTTC+AGG 0.393045 4_1:+57743090 None:intergenic
CCAGGTTTGCAGCAGCTTTG+AGG 0.393982 4_1:-57741073 Msa0558720:intron
TGATCAGCAGTAAAATCTTC+AGG 0.398020 4_1:+57741287 None:intergenic
GATGAGAGCAATAACAAATC+TGG 0.398080 4_1:-57743651 Msa0558720:CDS
AGCAATCTACCGGGTTCAAT+TGG 0.400598 4_1:-57743257 Msa0558720:CDS
GATGAGAGCAATAACAAATC+TGG 0.403002 4_1:-57743678 Msa0558720:CDS
GTAACATGGTGCCGTAGTTA+AGG 0.404794 4_1:-57740327 Msa0558720:three_prime_UTR
TATTATGAAAGAAGCAGATC+TGG 0.404926 4_1:+57744819 None:intergenic
CAGGTTTGCAGCAGCTTTGA+GGG 0.405138 4_1:-57741072 Msa0558720:CDS
GGATGCGGCGTTGCCAGCTT+TGG 0.406344 4_1:-57742328 Msa0558720:CDS
AGATGCAAGTGAAAATAAAA+AGG 0.406679 4_1:-57743523 Msa0558720:CDS
GATTCAAACGATAATAAATC+TGG 0.407305 4_1:-57743549 Msa0558720:CDS
TGGTTATCAAATTCTGAAGT+TGG 0.407557 4_1:-57741329 Msa0558720:CDS
CATGTGGCGGCCTACAGAAT+TGG 0.409128 4_1:-57740585 Msa0558720:CDS
CACTAAGCTTGCTGAATACA+AGG 0.413110 4_1:-57742936 Msa0558720:CDS
TGCCCGAAGATGTAGAAATA+TGG 0.415143 4_1:-57741827 Msa0558720:CDS
AAATATATTTACCTGTTGTA+TGG 0.415427 4_1:+57742820 None:intergenic
AAGCGCACCGTGTTTGAATT+GGG 0.415831 4_1:+57742856 None:intergenic
TCTTCAGGAGACTTATCTTC+AGG 0.416574 4_1:+57743753 None:intergenic
TATGTCATCTTGGTATCTTC+AGG 0.418811 4_1:+57743738 None:intergenic
AGGCAGGTAGGAGGATCTTC+AGG 0.419164 4_1:+57743123 None:intergenic
TTGGGTAATGAATGTCGTTC+CGG 0.420730 4_1:-57741039 Msa0558720:CDS
TCAAGGCATGGAATGTAGTC+AGG 0.422263 4_1:+57743210 None:intergenic
CCCTGTTATGCCCGGAAAGC+AGG 0.423452 4_1:-57743796 Msa0558720:CDS
TTTGTTGCTCTATGCTTGGT+TGG 0.424129 4_1:-57744020 Msa0558720:CDS
AGACACTGCTGAGACCATTA+AGG 0.424525 4_1:-57740696 Msa0558720:CDS
GTCTGTACCTGATATTGCCT+GGG 0.424607 4_1:-57742380 Msa0558720:CDS
CTTAGCATTGTTATCCTCCT+TGG 0.425739 4_1:+57743833 None:intergenic
TCCTCCTTGGTAGCTTCCTC+GGG 0.425882 4_1:+57743846 None:intergenic
GGTCACAATGGCCAGGGGAG+TGG 0.427651 4_1:-57741379 Msa0558720:CDS
GGAATGGGGCAATGGGTTAA+GGG 0.429792 4_1:+57745048 None:intergenic
TTATATTGATCACCACTGTA+TGG 0.429815 4_1:-57740368 Msa0558720:three_prime_UTR
ATACTCTACTGTCTCGAATT+CGG 0.430578 4_1:+57740533 None:intergenic
TTGTTGCTCTATGCTTGGTT+GGG 0.432621 4_1:-57744019 Msa0558720:CDS
TAGACCTTTCATCGGACTCT+TGG 0.434605 4_1:+57743442 None:intergenic
GGTACAATTTGCACTTGAAA+GGG 0.436429 4_1:-57742239 Msa0558720:CDS
TGTGATGGGAATGGGGCAAT+GGG 0.437449 4_1:+57745041 None:intergenic
ATGAGATGCCAACACGAGTT+AGG 0.439786 4_1:-57740492 Msa0558720:three_prime_UTR
TCAGAAGTTTGAAGATAAGA+AGG 0.440496 4_1:-57743877 Msa0558720:CDS
AGTCTGTACCTGATATTGCC+TGG 0.440752 4_1:-57742381 Msa0558720:CDS
ACAGAGCGAGGTGAAGAATC+AGG 0.442429 4_1:-57743925 Msa0558720:CDS
GAGAAATGAAATCTTGAATT+GGG 0.443254 4_1:+57744910 None:intergenic
TTGGTGGGGTAAAGTTGATA+GGG 0.443355 4_1:+57744976 None:intergenic
ATGTGATGGGAATGGGGCAA+TGG 0.446650 4_1:+57745040 None:intergenic
ATGGCATCAAATACTCTAGC+AGG 0.448584 4_1:+57742169 None:intergenic
AAAGAGAAAGCCACCAAAGC+TGG 0.449809 4_1:+57742315 None:intergenic
GGGCAATGGGTTAAGGGAAA+AGG 0.450141 4_1:+57745054 None:intergenic
TGTGTTTGTTGCTCTATGCT+TGG 0.454286 4_1:-57744024 Msa0558720:CDS
AGATAGTAAGACAGAAGAAA+AGG 0.454824 4_1:-57743481 Msa0558720:CDS
AGGGATAAACTTAATAAAGT+TGG 0.455976 4_1:-57741665 Msa0558720:CDS
TCATAGTCTTGACATATAGA+AGG 0.456886 4_1:+57741581 None:intergenic
TAAATAATTGGAAGTGTGTC+CGG 0.459194 4_1:+57741008 None:intergenic
TCCATGCCTTGACAACTTGA+AGG 0.459542 4_1:-57743199 Msa0558720:CDS
CGGAAAGCAGGAAGAGAAAT+CGG 0.459697 4_1:-57743784 Msa0558720:CDS
TCATAACACTCATTAGAAGT+TGG 0.460853 4_1:+57741623 None:intergenic
TGGATCAGTATATGTCATCT+TGG 0.462212 4_1:+57743728 None:intergenic
TGTAGGTGGCAAACTTCTCT+TGG 0.463244 4_1:-57741916 Msa0558720:intron
TCCTGCTATATCTGCTGTGA+TGG 0.463748 4_1:-57742212 Msa0558720:CDS
ATACAAGGGGCACCAGAATT+GGG 0.464985 4_1:-57742921 Msa0558720:CDS
TTTCTCGCTCTCATCAGAAT+CGG 0.465423 4_1:+57743578 None:intergenic
TGCGGCGTTGCCAGCTTTGG+TGG 0.467886 4_1:-57742325 Msa0558720:CDS
CTTCTGAGGATTGCTATTAG+TGG 0.470869 4_1:+57743893 None:intergenic
TGTCCAAGTCTTATCTAAAT+GGG 0.471066 4_1:-57741244 Msa0558720:CDS
AGGTACAATTTGCACTTGAA+AGG 0.472614 4_1:-57742240 Msa0558720:CDS
TTACATTGACACCATACAAC+AGG 0.472893 4_1:-57742831 Msa0558720:intron
TGTTTGGCATATATCATGAT+TGG 0.477645 4_1:-57740974 Msa0558720:CDS
CTCTAACAAAAGCAATGTGT+TGG 0.477646 4_1:-57741706 Msa0558720:CDS
TTGACAACTTGAAGGCGATT+CGG 0.478459 4_1:-57743191 Msa0558720:CDS
GCAGTAAAATCTTCAGGAGC+AGG 0.479751 4_1:+57741293 None:intergenic
TCAGAATTTGATAACCAGTA+AGG 0.480321 4_1:+57741335 None:intergenic
GGGAAGTGGTGTCTATCAGC+AGG 0.480892 4_1:-57741685 Msa0558720:CDS
CTTCTCACTCTCGTCAGAAT+CGG 0.480906 4_1:+57743605 None:intergenic
CATTAAGGAGCTGGAGAGCT+TGG 0.481031 4_1:-57740681 Msa0558720:CDS
CACACGTGTTTGTTTGCCCC+AGG 0.482612 4_1:+57742363 None:intergenic
TATTCTTGACTACCAAAACT+TGG 0.483603 4_1:-57740236 Msa0558720:three_prime_UTR
ATTGAACCCGGTAGATTGCT+TGG 0.487643 4_1:+57743260 None:intergenic
AACACTATGAACACAGAGAA+AGG 0.487854 4_1:-57743152 Msa0558720:CDS
AAATTGAATGTGATGGGAAT+GGG 0.490863 4_1:+57745033 None:intergenic
GAACAAGAAGACATCTGATT+CGG 0.493963 4_1:-57743700 Msa0558720:CDS
GAGACAGTAGAGTATGCTAT+TGG 0.494819 4_1:-57740563 Msa0558720:CDS
AAATCCTCCAAGCAATCTAC+CGG 0.500678 4_1:-57743267 Msa0558720:CDS
CCGAGGTTGATAGGATTCTC+AGG 0.501423 4_1:-57740742 Msa0558720:CDS
ATCAAATACTCTAGCAGGGA+AGG 0.501685 4_1:+57742174 None:intergenic
TTCAGGAAGGGCGACAAGGC+AGG 0.504460 4_1:+57743107 None:intergenic
TCTACAGCGTGCACAATGAA+TGG 0.504753 4_1:+57742150 None:intergenic
AGAGTTCCGTGGCATATAGA+AGG 0.507563 4_1:-57742130 Msa0558720:intron
TTGAATTGGGTTCCACCACC+AGG 0.509928 4_1:+57742869 None:intergenic
TGCTGAGACCATTAAGGAGC+TGG 0.513322 4_1:-57740690 Msa0558720:CDS
GAACGTGGGTCACAATGGCC+AGG 0.519506 4_1:-57741386 Msa0558720:CDS
TCTAACAAAAGCAATGTGTT+GGG 0.523325 4_1:-57741705 Msa0558720:CDS
ATCTGCATGAAGTAGATCAT+AGG 0.524703 4_1:+57740923 None:intergenic
AAGAAACAGAGACCAAAGAA+AGG 0.526718 4_1:+57745105 None:intergenic
CCTGCTTTCCGGGCATAACA+GGG 0.529227 4_1:+57743796 None:intergenic
TGTCGTTCCGGTAGACTCAC+CGG 0.531879 4_1:-57741027 Msa0558720:CDS
TTCTTATCTTCAAACTTCTG+AGG 0.533134 4_1:+57743879 None:intergenic
AAAAGATGAACATGAAGCTC+AGG 0.533172 4_1:-57742260 Msa0558720:CDS
GCCTTCAAGTTGTCAAGGCA+TGG 0.539567 4_1:+57743198 None:intergenic
TGCCTTGTCGCCCTTCCTGA+AGG 0.541345 4_1:-57743105 Msa0558720:CDS
AAGTCTTATCTAAATGGGAT+TGG 0.544074 4_1:-57741239 Msa0558720:CDS
TCTTGAATTGGGATGGTGAA+AGG 0.545219 4_1:+57744921 None:intergenic
GATATAAACGCCCAATCGAA+TGG 0.547059 4_1:-57743083 Msa0558720:CDS
AAAATTGAATGTGATGGGAA+TGG 0.547739 4_1:+57745032 None:intergenic
AAAAGCAATGTGTTGGGAAG+TGG 0.548445 4_1:-57741699 Msa0558720:CDS
AATCCCATTTAGATAAGACT+TGG 0.550835 4_1:+57741241 None:intergenic
GGCGTTTATATCCTTCAGGA+AGG 0.553204 4_1:+57743094 None:intergenic
TTTCATTCAGAAGCTCTGAC+TGG 0.555443 4_1:+57743355 None:intergenic
GACCCCGTCTACAGAAATGA+AGG 0.557235 4_1:-57741729 Msa0558720:intron
CTTCTCATTAGACCTTTCAT+CGG 0.557553 4_1:+57743434 None:intergenic
TTGTGCATGCAACTTTGCAA+TGG 0.557899 4_1:+57741428 None:intergenic
AGGGCGACAAGGCAGGTAGG+AGG 0.560407 4_1:+57743114 None:intergenic
GCATGGAATGTAGTCAGGGC+CGG 0.560863 4_1:+57743215 None:intergenic
GTCCATGACATTGCGCACAT+TGG 0.560985 4_1:+57741205 None:intergenic
TATTGAAAATTGAATGTGAT+GGG 0.561369 4_1:+57745027 None:intergenic
GAAAACAACCCTGTTATGCC+CGG 0.562365 4_1:-57743804 Msa0558720:CDS
TAATGGTCTCAGCAGTGTCT+CGG 0.565162 4_1:+57740699 None:intergenic
TTCCACCACCAGGAAAAGTA+AGG 0.565768 4_1:+57742879 None:intergenic
CCAGTTAGTTCGACAGAACG+TGG 0.567966 4_1:-57741401 Msa0558720:CDS
GATAGGATTCTCAGGCCTGA+GGG 0.568699 4_1:-57740734 Msa0558720:CDS
CAGAAGTTTGAAGATAAGAA+GGG 0.569315 4_1:-57743876 Msa0558720:CDS
CCTGCTATATCTGCTGTGAT+GGG 0.569858 4_1:-57742211 Msa0558720:CDS
CTTCCAATTATTTATGAACG+TGG 0.571347 4_1:-57740999 Msa0558720:CDS
AACGTGGGTCACAATGGCCA+GGG 0.572813 4_1:-57741385 Msa0558720:CDS
CCCATCACAGCAGATATAGC+AGG 0.575073 4_1:+57742211 None:intergenic
GTCCAATGTGCGCAATGTCA+TGG 0.576181 4_1:-57741207 Msa0558720:CDS
ATCCTTCAGGAAGGGCGACA+AGG 0.576918 4_1:+57743103 None:intergenic
GAACCCGGTAGATTGCTTGG+AGG 0.577245 4_1:+57743263 None:intergenic
TTAAGGGAAAAGGATGAAGA+AGG 0.578727 4_1:+57745064 None:intergenic
TAAAATCACCTAACTCGTGT+TGG 0.583625 4_1:+57740484 None:intergenic
ATTATGAAAGAAGCAGATCT+GGG 0.585185 4_1:+57744820 None:intergenic
ACTTACACTAAAGATTTGCA+GGG 0.585635 4_1:-57740629 Msa0558720:CDS
ATGAAGTAGATCATAGGACC+TGG 0.586094 4_1:+57740929 None:intergenic
TAATGAGCTACTCCCTTCTG+GGG 0.587270 4_1:-57743379 Msa0558720:CDS
CCATGTTGTCACTTATCAAA+AGG 0.588599 4_1:+57744117 None:intergenic
GGAAGGGCGACAAGGCAGGT+AGG 0.588857 4_1:+57743111 None:intergenic
AGGATGAAGAAGGATAGAGT+TGG 0.589002 4_1:+57745074 None:intergenic
TGATCAGAATTCCTTAACTA+CGG 0.590344 4_1:+57740316 None:intergenic
AATGAAATCTTGAATTGGGA+TGG 0.593099 4_1:+57744914 None:intergenic
CAATTCTGTAGGCCGCCACA+TGG 0.593696 4_1:+57740586 None:intergenic
CTTTGGATGATTGATAGTTG+AGG 0.594228 4_1:-57740273 Msa0558720:three_prime_UTR
AATTGAATGTGATGGGAATG+GGG 0.596877 4_1:+57745034 None:intergenic
CTTGGTGACATCTATGCAGT+GGG 0.597887 4_1:-57740663 Msa0558720:CDS
GAATCGCCTTCAAGTTGTCA+AGG 0.598521 4_1:+57743193 None:intergenic
ATGATGATCCTAATGCCGCC+TGG 0.598814 4_1:-57741562 Msa0558720:intron
GGAGTAGCTCATTAGAACCC+TGG 0.600496 4_1:+57743388 None:intergenic
TTACTGCTGATCATGAACAC+TGG 0.609094 4_1:-57741277 Msa0558720:CDS
TAACAAATCTGGTTCTGATG+AGG 0.609989 4_1:-57743640 Msa0558720:CDS
GCGTTTATATCCTTCAGGAA+GGG 0.610450 4_1:+57743095 None:intergenic
CGGACAATAAGCTTTCCCTC+AGG 0.610538 4_1:+57740719 None:intergenic
AGTGTGTCCGGTGAGTCTAC+CGG 0.613797 4_1:+57741020 None:intergenic
AAGCTTAGTGTGTGGAACGT+TGG 0.614215 4_1:+57742949 None:intergenic
TGTTGTCACTTATCAAAAGG+TGG 0.616743 4_1:+57744120 None:intergenic
AAACTCTGCAATGTCACTGC+CGG 0.617134 4_1:-57743234 Msa0558720:CDS
GAAATACCTTCTATATGCCA+CGG 0.618360 4_1:+57742124 None:intergenic
TCTACTGTCTCCAATTCTGT+AGG 0.618641 4_1:+57740575 None:intergenic
ACACGTGTGATATTGGATGT+TGG 0.619996 4_1:-57742349 Msa0558720:CDS
GCTTGGTGACATCTATGCAG+TGG 0.621238 4_1:-57740664 Msa0558720:CDS
GACATGAGATCAGTTTATGG+AGG 0.624346 4_1:-57741185 Msa0558720:CDS
ACTAAGCTTGCTGAATACAA+GGG 0.624777 4_1:-57742935 Msa0558720:CDS
TATTCAGCAAGCTTAGTGTG+TGG 0.626139 4_1:+57742941 None:intergenic
ATGGCCCAAAAGCAGAGAGA+AGG 0.626143 4_1:-57743064 Msa0558720:intron
GTTTGAAGCTGTAGTTGCCG+AGG 0.628136 4_1:-57740759 Msa0558720:CDS
TGATAGGATTCTCAGGCCTG+AGG 0.629871 4_1:-57740735 Msa0558720:CDS
GGTGACATCTATGCAGTGGG+AGG 0.630863 4_1:-57740660 Msa0558720:CDS
TCAAATACTCTAGCAGGGAA+GGG 0.631133 4_1:+57742175 None:intergenic
GTACAATTTGCACTTGAAAG+GGG 0.633712 4_1:-57742238 Msa0558720:CDS
CCTGAGAATCCTATCAACCT+CGG 0.634465 4_1:+57740742 None:intergenic
CGACAGAACGTGGGTCACAA+TGG 0.634623 4_1:-57741391 Msa0558720:CDS
GTGATATTGGATGTTGGATG+CGG 0.635039 4_1:-57742343 Msa0558720:CDS
GACCATACAAAGAAACCACC+AGG 0.636775 4_1:+57741873 None:intergenic
TCTGCCCGAGGAAGCTACCA+AGG 0.636962 4_1:-57743850 Msa0558720:CDS
CTGCTGTGATGGGCACAAAG+AGG 0.637182 4_1:-57742201 Msa0558720:CDS
GCAGAGTTTCCAATTGAACC+CGG 0.637837 4_1:+57743248 None:intergenic
ACCGTTGAGCAGTAACTCGA+CGG 0.639254 4_1:+57744056 None:intergenic
ATATTGAAAATTGAATGTGA+TGG 0.640293 4_1:+57745026 None:intergenic
CAAGGCATGGAATGTAGTCA+GGG 0.640525 4_1:+57743211 None:intergenic
TGGCATCAAATACTCTAGCA+GGG 0.641803 4_1:+57742170 None:intergenic
TAAATGGGATTGGCATTCAG+TGG 0.645780 4_1:-57741229 Msa0558720:CDS
GTAACCAAGAGTCCGATGAA+AGG 0.646102 4_1:-57743446 Msa0558720:CDS
AATCATTTAGCACATATCCC+AGG 0.649524 4_1:-57740947 Msa0558720:CDS
ACATGAGATCAGTTTATGGA+GGG 0.652022 4_1:-57741184 Msa0558720:intron
TGAAGTAGATCATAGGACCT+GGG 0.654597 4_1:+57740930 None:intergenic
CTAAGCTTGCTGAATACAAG+GGG 0.655529 4_1:-57742934 Msa0558720:CDS
TCCGTCGAGTTACTGCTCAA+CGG 0.657836 4_1:-57744057 Msa0558720:CDS
ACGTGGGTCACAATGGCCAG+GGG 0.659025 4_1:-57741384 Msa0558720:CDS
AGAAACAAGCTTCCATACAG+TGG 0.659895 4_1:+57740356 None:intergenic
GAATAGTTATCTCTGCATTG+TGG 0.661597 4_1:+57744846 None:intergenic
AATCCTCCAAGCAATCTACC+GGG 0.661733 4_1:-57743266 Msa0558720:CDS
TGAGGTGAAAGGACAGAGCG+AGG 0.662207 4_1:-57743937 Msa0558720:CDS
AATGAGCTACTCCCTTCTGG+GGG 0.663250 4_1:-57743378 Msa0558720:CDS
TGATACATAACGAATAATGG+AGG 0.665609 4_1:+57740432 None:intergenic
TTGAATAGAGTATTGCGACC+TGG 0.667810 4_1:-57741891 Msa0558720:CDS
GTGTCCAGAAGTCCATGTGG+CGG 0.672312 4_1:-57740598 Msa0558720:CDS
GGAAGTGGTGTCTATCAGCA+GGG 0.674006 4_1:-57741684 Msa0558720:CDS
GTGCACGCTGTAGAGTTCCG+TGG 0.676281 4_1:-57742141 Msa0558720:CDS
AATAGAGTATTGCGACCTGG+TGG 0.685656 4_1:-57741888 Msa0558720:CDS
GAAGATGTAGAAATATGGAA+CGG 0.686612 4_1:-57741822 Msa0558720:intron
GAAGAAAAGGCAGATCAAAG+TGG 0.688007 4_1:-57743468 Msa0558720:CDS
TCTGTACCTGATATTGCCTG+GGG 0.689283 4_1:-57742379 Msa0558720:CDS
CAGTTAGTTCGACAGAACGT+GGG 0.696778 4_1:-57741400 Msa0558720:CDS
GGTGTTTCACGGATTCTATG+CGG 0.701593 4_1:-57745162 None:intergenic
GGTGGAACCCAATTCAAACA+CGG 0.706135 4_1:-57742863 Msa0558720:CDS
CAGAGACTAGGAGAGAGTGA+CGG 0.708417 4_1:+57745139 None:intergenic
TAAGAAGGGAGATCTGCCCG+AGG 0.713293 4_1:-57743862 Msa0558720:CDS
TTGTGGTGTTGTAACGCATG+AGG 0.719024 4_1:+57744863 None:intergenic
GCCCGAGGAAGCTACCAAGG+AGG 0.738197 4_1:-57743847 Msa0558720:CDS
TATGTGTCCAGAAGTCCATG+TGG 0.749324 4_1:-57740601 Msa0558720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTAATTAAAATTCAATTT+TGG - chr4_1:57742718-57742737 Msa0558720:intron 10.0%
!! TTAAAAATAAAAACAGAAAA+AGG - chr4_1:57743835-57743854 Msa0558720:CDS 10.0%
!! GGAAAAGTAAAATTAATAAA+AGG + chr4_1:57740617-57740636 None:intergenic 15.0%
!! TATATAACATATATCACTAA+TGG + chr4_1:57740828-57740847 None:intergenic 15.0%
!!! TTTTAATTTTCCTTAATTCA+TGG + chr4_1:57741023-57741042 None:intergenic 15.0%
!! AACCTAGTTATATATATATA+TGG - chr4_1:57741051-57741070 Msa0558720:CDS 15.0%
!!! AATCACAAATTTTATATGAT+TGG - chr4_1:57741076-57741095 Msa0558720:intron 15.0%
!! ATGTATTATGGATTTAATTA+TGG + chr4_1:57742586-57742605 None:intergenic 15.0%
!!! ATTGAATTTTAATTAGAACT+AGG + chr4_1:57742716-57742735 None:intergenic 15.0%
!! TATTGAAAATTGAATGTGAT+GGG + chr4_1:57740313-57740332 None:intergenic 20.0%
!! ATATTGAAAATTGAATGTGA+TGG + chr4_1:57740314-57740333 None:intergenic 20.0%
!! CACCATATATATATATAACT+AGG + chr4_1:57741056-57741075 None:intergenic 20.0%
!! AAATATATTTACCTGTTGTA+TGG + chr4_1:57742520-57742539 None:intergenic 20.0%
!! TTGGAAGATATAATTCAAAA+TGG - chr4_1:57742737-57742756 Msa0558720:intron 20.0%
!! CAAAATGGAAACATAATATT+TGG - chr4_1:57742752-57742771 Msa0558720:intron 20.0%
!! AAATCTTCAAACAAGTAATT+AGG + chr4_1:57742779-57742798 None:intergenic 20.0%
!!! TACTTGTTTGAAGATTTTTA+TGG - chr4_1:57742782-57742801 Msa0558720:intron 20.0%
!!! GAATATTTTTTCCTAAACAT+TGG + chr4_1:57742808-57742827 None:intergenic 20.0%
!! TATAATCCATGTAAATAAAC+TGG - chr4_1:57743363-57743382 Msa0558720:CDS 20.0%
!!! TAAACTGGCTTTTATAATTT+TGG - chr4_1:57743378-57743397 Msa0558720:CDS 20.0%
!! AATTAAATTCAGAGTAACAT+TGG + chr4_1:57744198-57744217 None:intergenic 20.0%
!! TAATGATACATAACGAATAA+TGG + chr4_1:57744911-57744930 None:intergenic 20.0%
!!! TTGTTTCTTTTTTTGTAACA+TGG - chr4_1:57744996-57745015 Msa0558720:five_prime_UTR 20.0%
!! TATACGAAAGATGATGATTT+TGG + chr4_1:57740383-57740402 None:intergenic 25.0%
! GAGAAATGAAATCTTGAATT+GGG + chr4_1:57740430-57740449 None:intergenic 25.0%
! TGAGAAATGAAATCTTGAAT+TGG + chr4_1:57740431-57740450 None:intergenic 25.0%
!! AACATATATCACTAATGGAT+TGG + chr4_1:57740823-57740842 None:intergenic 25.0%
! TCTTGAATGATATCATGATT+TGG - chr4_1:57740992-57741011 Msa0558720:CDS 25.0%
! GATTCAAACGATAATAAATC+TGG - chr4_1:57741788-57741807 Msa0558720:intron 25.0%
! AGATGCAAGTGAAAATAAAA+AGG - chr4_1:57741814-57741833 Msa0558720:intron 25.0%
!!! CATAGTGTTTAGTAGTTTTA+AGG + chr4_1:57742174-57742193 None:intergenic 25.0%
!! GCTTTGTCAATTTTCATTAT+TGG - chr4_1:57742313-57742332 Msa0558720:CDS 25.0%
! AAAATGTTCTCTTTCAGATA+TGG - chr4_1:57742361-57742380 Msa0558720:CDS 25.0%
! AACATTAGAACAAACACATA+CGG + chr4_1:57742563-57742582 None:intergenic 25.0%
!! AATGTGGTTAGATGAAATTT+TGG - chr4_1:57743268-57743287 Msa0558720:CDS 25.0%
!! ACAAGCTTGAAATTTTTATG+CGG - chr4_1:57743295-57743314 Msa0558720:CDS 25.0%
! TAAAAGCCAGTTTATTTACA+TGG + chr4_1:57743372-57743391 None:intergenic 25.0%
!! ACTATTAAGCGTTTCAATTT+TGG - chr4_1:57743564-57743583 Msa0558720:CDS 25.0%
! AGGGATAAACTTAATAAAGT+TGG - chr4_1:57743672-57743691 Msa0558720:CDS 25.0%
! TTTGAGGGATTTGAAAATTT+GGG - chr4_1:57744280-57744299 Msa0558720:intron 25.0%
!! TGTTTTCAAAGCTTAAGAAA+AGG - chr4_1:57744441-57744460 Msa0558720:intron 25.0%
! TACATTTACCAACAAAAACT+TGG - chr4_1:57744488-57744507 Msa0558720:intron 25.0%
!! ACAAAACTAATACCAAGTTT+TGG + chr4_1:57745116-57745135 None:intergenic 25.0%
!!! GTTTTTTTCGTTCCTTTCTT+TGG - chr4_1:57740220-57740239 Msa0558720:three_prime_UTR 30.0%
! AAATTGAATGTGATGGGAAT+GGG + chr4_1:57740307-57740326 None:intergenic 30.0%
! AAAATTGAATGTGATGGGAA+TGG + chr4_1:57740308-57740327 None:intergenic 30.0%
AATGAAATCTTGAATTGGGA+TGG + chr4_1:57740426-57740445 None:intergenic 30.0%
ATTATGAAAGAAGCAGATCT+GGG + chr4_1:57740520-57740539 None:intergenic 30.0%
TATTATGAAAGAAGCAGATC+TGG + chr4_1:57740521-57740540 None:intergenic 30.0%
AGATCTGCTTCTTTCATAAT+AGG - chr4_1:57740520-57740539 Msa0558720:exon 30.0%
TAGATCCATAGAATAAAACG+TGG + chr4_1:57740643-57740662 None:intergenic 30.0%
TTAAGCGATCAATCAAGAAA+CGG + chr4_1:57740671-57740690 None:intergenic 30.0%
TAGCAGATCTAATAGATTGA+TGG + chr4_1:57740781-57740800 None:intergenic 30.0%
AGATGAGTCGAATAAAAATG+AGG - chr4_1:57741382-57741401 Msa0558720:CDS 30.0%
TCGAATAAAAATGAGGTGAA+AGG - chr4_1:57741389-57741408 Msa0558720:CDS 30.0%
TTCTTATCTTCAAACTTCTG+AGG + chr4_1:57741461-57741480 None:intergenic 30.0%
TCAGAAGTTTGAAGATAAGA+AGG - chr4_1:57741460-57741479 Msa0558720:intron 30.0%
CAGAAGTTTGAAGATAAGAA+GGG - chr4_1:57741461-57741480 Msa0558720:intron 30.0%
AGATAGTAAGACAGAAGAAA+AGG - chr4_1:57741856-57741875 Msa0558720:CDS 30.0%
AGATGAAAATACCAAAAACC+AGG - chr4_1:57741931-57741950 Msa0558720:intron 30.0%
GATGAAAATACCAAAAACCA+GGG - chr4_1:57741932-57741951 Msa0558720:intron 30.0%
AATGAAACTACAACTCAAAC+TGG - chr4_1:57741998-57742017 Msa0558720:intron 30.0%
! AGAGAAGGTACAAATAAATC+AGG - chr4_1:57742288-57742307 Msa0558720:CDS 30.0%
AACTGACAGTACATGTATTA+TGG + chr4_1:57742598-57742617 None:intergenic 30.0%
! GATTTTTATGGCCAATGTTT+AGG - chr4_1:57742794-57742813 Msa0558720:intron 30.0%
CATCTAGTTATACAATCCAA+GGG - chr4_1:57742828-57742847 Msa0558720:intron 30.0%
! ATTTCACAAGAATTTTCCCT+TGG + chr4_1:57742847-57742866 None:intergenic 30.0%
! TTCCATATTTCTACATCTTC+GGG + chr4_1:57743515-57743534 None:intergenic 30.0%
! GTTCCATATTTCTACATCTT+CGG + chr4_1:57743516-57743535 None:intergenic 30.0%
GAAGATGTAGAAATATGGAA+CGG - chr4_1:57743515-57743534 Msa0558720:CDS 30.0%
TCTAACAAAAGCAATGTGTT+GGG - chr4_1:57743632-57743651 Msa0558720:CDS 30.0%
TCATAACACTCATTAGAAGT+TGG + chr4_1:57743717-57743736 None:intergenic 30.0%
! TCATAGTCTTGACATATAGA+AGG + chr4_1:57743759-57743778 None:intergenic 30.0%
TCAGTAAAGGAAAAAATACC+AGG + chr4_1:57743796-57743815 None:intergenic 30.0%
!!! AAAACAGAAAAAGGCGTTTT+TGG - chr4_1:57743844-57743863 Msa0558720:CDS 30.0%
! TCAGAATTTGATAACCAGTA+AGG + chr4_1:57744005-57744024 None:intergenic 30.0%
!! TGGTTATCAAATTCTGAAGT+TGG - chr4_1:57744008-57744027 Msa0558720:CDS 30.0%
!! AATTCTGAAGTTGGAGTTTA+TGG - chr4_1:57744017-57744036 Msa0558720:CDS 30.0%
! TGTCCAAGTCTTATCTAAAT+GGG - chr4_1:57744093-57744112 Msa0558720:CDS 30.0%
AATCCCATTTAGATAAGACT+TGG + chr4_1:57744099-57744118 None:intergenic 30.0%
! AAGTCTTATCTAAATGGGAT+TGG - chr4_1:57744098-57744117 Msa0558720:CDS 30.0%
! CTTTGAGGGATTTGAAAATT+TGG - chr4_1:57744279-57744298 Msa0558720:intron 30.0%
! TAAATAATTGGAAGTGTGTC+CGG + chr4_1:57744332-57744351 None:intergenic 30.0%
CTTCCAATTATTTATGAACG+TGG - chr4_1:57744338-57744357 Msa0558720:intron 30.0%
AGACCACGTTCATAAATAAT+TGG + chr4_1:57744344-57744363 None:intergenic 30.0%
TGTTTGGCATATATCATGAT+TGG - chr4_1:57744363-57744382 Msa0558720:intron 30.0%
! CTGAAAAACCAAGTTTTTGT+TGG + chr4_1:57744499-57744518 None:intergenic 30.0%
!! CAAAAACTTGGTTTTTCAGA+AGG - chr4_1:57744500-57744519 Msa0558720:intron 30.0%
!!! TCATTTTGAAACGTTGTTTG+TGG - chr4_1:57744544-57744563 Msa0558720:intron 30.0%
ACTTACACTAAAGATTTGCA+GGG - chr4_1:57744708-57744727 Msa0558720:intron 30.0%
TGATACATAACGAATAATGG+AGG + chr4_1:57744908-57744927 None:intergenic 30.0%
TTATATTGATCACCACTGTA+TGG - chr4_1:57744969-57744988 Msa0558720:five_prime_UTR 30.0%
TGATCAGAATTCCTTAACTA+CGG + chr4_1:57745024-57745043 None:intergenic 30.0%
! TCACATTCTTGGAATTTTAG+AGG - chr4_1:57745041-57745060 Msa0558720:five_prime_UTR 30.0%
TATTCTTGACTACCAAAACT+TGG - chr4_1:57745101-57745120 Msa0558720:five_prime_UTR 30.0%
GAACGAAAAAAACAGAGACT+AGG + chr4_1:57740213-57740232 None:intergenic 35.0%
AAGAAACAGAGACCAAAGAA+AGG + chr4_1:57740235-57740254 None:intergenic 35.0%
TTAAGGGAAAAGGATGAAGA+AGG + chr4_1:57740276-57740295 None:intergenic 35.0%
! AATTGAATGTGATGGGAATG+GGG + chr4_1:57740306-57740325 None:intergenic 35.0%
!! GAAAGATGATGATTTTGGTG+GGG + chr4_1:57740378-57740397 None:intergenic 35.0%
!! CGAAAGATGATGATTTTGGT+GGG + chr4_1:57740379-57740398 None:intergenic 35.0%
! ACGAAAGATGATGATTTTGG+TGG + chr4_1:57740380-57740399 None:intergenic 35.0%
GAACGAACGAAGAAAGAAAA+AGG + chr4_1:57740455-57740474 None:intergenic 35.0%
GAATAGTTATCTCTGCATTG+TGG + chr4_1:57740494-57740513 None:intergenic 35.0%
AGAAGTGGATAAATGTGTGA+AGG + chr4_1:57740578-57740597 None:intergenic 35.0%
CCATAGAATAAAACGTGGAA+AGG + chr4_1:57740638-57740657 None:intergenic 35.0%
!! CCTTTCCACGTTTTATTCTA+TGG - chr4_1:57740635-57740654 Msa0558720:CDS 35.0%
TTTGGCAATGCCATGAATTA+AGG - chr4_1:57741010-57741029 Msa0558720:CDS 35.0%
GCAGAATACTGAAGAATCTT+TGG + chr4_1:57741119-57741138 None:intergenic 35.0%
! GCATTCGATTTTCAACATTG+TGG - chr4_1:57741137-57741156 Msa0558720:intron 35.0%
! TCGATTTTCAACATTGTGGA+TGG - chr4_1:57741141-57741160 Msa0558720:intron 35.0%
! TGTTGTCACTTATCAAAAGG+TGG + chr4_1:57741220-57741239 None:intergenic 35.0%
! CCATGTTGTCACTTATCAAA+AGG + chr4_1:57741223-57741242 None:intergenic 35.0%
! CCTTTTGATAAGTGACAACA+TGG - chr4_1:57741220-57741239 Msa0558720:CDS 35.0%
TATGTCATCTTGGTATCTTC+AGG + chr4_1:57741602-57741621 None:intergenic 35.0%
TGGATCAGTATATGTCATCT+TGG + chr4_1:57741612-57741631 None:intergenic 35.0%
GATGTCTTCTTGTTCTGATT+TGG + chr4_1:57741632-57741651 None:intergenic 35.0%
GAACAAGAAGACATCTGATT+CGG - chr4_1:57741637-57741656 Msa0558720:CDS 35.0%
GATGAGAGCAATAACAAATC+TGG - chr4_1:57741659-57741678 Msa0558720:CDS 35.0%
GATGAGAGCAATAACAAATC+TGG - chr4_1:57741659-57741678 Msa0558720:CDS 35.0%
!! TAACAAATCTGGTTCTGATG+AGG - chr4_1:57741670-57741689 Msa0558720:CDS 35.0%
TGATGAGAGCGAGAAAAAAT+CGG - chr4_1:57741766-57741785 Msa0558720:intron 35.0%
CTTCTCATTAGACCTTTCAT+CGG + chr4_1:57741906-57741925 None:intergenic 35.0%
!!! AACTGGATCTTTTTCAACTC+AGG - chr4_1:57742015-57742034 Msa0558720:intron 35.0%
AACACTATGAACACAGAGAA+AGG - chr4_1:57742185-57742204 Msa0558720:CDS 35.0%
!! ACTAAGCTTGCTGAATACAA+GGG - chr4_1:57742402-57742421 Msa0558720:intron 35.0%
TTACATTGACACCATACAAC+AGG - chr4_1:57742506-57742525 Msa0558720:intron 35.0%
! AGATGAGAAATTTGCTCTAG+TGG + chr4_1:57742650-57742669 None:intergenic 35.0%
CCTTGGATTGTATAACTAGA+TGG + chr4_1:57742830-57742849 None:intergenic 35.0%
CCATCTAGTTATACAATCCA+AGG - chr4_1:57742827-57742846 Msa0558720:intron 35.0%
! GTTTTCATCCTAGAATTGCT+AGG - chr4_1:57742873-57742892 Msa0558720:CDS 35.0%
CAAACAAACACGTGTGATAT+TGG - chr4_1:57742981-57743000 Msa0558720:intron 35.0%
! TGAGCTTCATGTTCATCTTT+TGG + chr4_1:57743078-57743097 None:intergenic 35.0%
AAAAGATGAACATGAAGCTC+AGG - chr4_1:57743077-57743096 Msa0558720:CDS 35.0%
AGGTACAATTTGCACTTGAA+AGG - chr4_1:57743097-57743116 Msa0558720:CDS 35.0%
GGTACAATTTGCACTTGAAA+GGG - chr4_1:57743098-57743117 Msa0558720:CDS 35.0%
GTACAATTTGCACTTGAAAG+GGG - chr4_1:57743099-57743118 Msa0558720:CDS 35.0%
GAAATACCTTCTATATGCCA+CGG + chr4_1:57743216-57743235 None:intergenic 35.0%
CATTCACTGCTGTAAAAGTT+AGG + chr4_1:57743252-57743271 None:intergenic 35.0%
! AACTTTTACAGCAGTGAATG+TGG - chr4_1:57743252-57743271 Msa0558720:CDS 35.0%
TCTAAATGCCAAAATGATGC+TGG + chr4_1:57743338-57743357 None:intergenic 35.0%
TTCACTATTTGTGCACATGT+AGG - chr4_1:57743404-57743423 Msa0558720:CDS 35.0%
CTCTAACAAAAGCAATGTGT+TGG - chr4_1:57743631-57743650 Msa0558720:CDS 35.0%
ACATATAGAAGGCTCATTCT+TGG + chr4_1:57743748-57743767 None:intergenic 35.0%
GTAAAGGAAAAAATACCAGG+CGG + chr4_1:57743793-57743812 None:intergenic 35.0%
ACATTCTAATCGCTCAGTAA+AGG + chr4_1:57743809-57743828 None:intergenic 35.0%
TGATCAGCAGTAAAATCTTC+AGG + chr4_1:57744053-57744072 None:intergenic 35.0%
! GTGTCCAAGTCTTATCTAAA+TGG - chr4_1:57744092-57744111 Msa0558720:CDS 35.0%
ATGGACATGAGATCAGTTTA+TGG - chr4_1:57744149-57744168 Msa0558720:intron 35.0%
ACATGAGATCAGTTTATGGA+GGG - chr4_1:57744153-57744172 Msa0558720:intron 35.0%
!!! GTTTGACACCTTCTGTTTTT+TGG - chr4_1:57744239-57744258 Msa0558720:intron 35.0%
ATTTATGAACGTGGTCTGTT+TGG - chr4_1:57744347-57744366 Msa0558720:intron 35.0%
AATCATTTAGCACATATCCC+AGG - chr4_1:57744390-57744409 Msa0558720:intron 35.0%
ATCTGCATGAAGTAGATCAT+AGG + chr4_1:57744417-57744436 None:intergenic 35.0%
GACTTACACTAAAGATTTGC+AGG - chr4_1:57744707-57744726 Msa0558720:intron 35.0%
ATACTCTACTGTCTCGAATT+CGG + chr4_1:57744807-57744826 None:intergenic 35.0%
TAAAATCACCTAACTCGTGT+TGG + chr4_1:57744856-57744875 None:intergenic 35.0%
! AACACGAGTTAGGTGATTTT+AGG - chr4_1:57744855-57744874 Msa0558720:five_prime_UTR 35.0%
! ACACGAGTTAGGTGATTTTA+GGG - chr4_1:57744856-57744875 Msa0558720:five_prime_UTR 35.0%
AGGAATTCTGATCACATTCT+TGG - chr4_1:57745030-57745049 Msa0558720:five_prime_UTR 35.0%
!! TCTTGGAATTTTAGAGGCTT+TGG - chr4_1:57745047-57745066 Msa0558720:five_prime_UTR 35.0%
! CTTTGGATGATTGATAGTTG+AGG - chr4_1:57745064-57745083 Msa0558720:five_prime_UTR 35.0%
! ATGATTGATAGTTGAGGTTC+TGG - chr4_1:57745070-57745089 Msa0558720:five_prime_UTR 35.0%
AGGATGAAGAAGGATAGAGT+TGG + chr4_1:57740266-57740285 None:intergenic 40.0%
!! TTGGTGGGGTAAAGTTGATA+GGG + chr4_1:57740364-57740383 None:intergenic 40.0%
! TTTGGTGGGGTAAAGTTGAT+AGG + chr4_1:57740365-57740384 None:intergenic 40.0%
TCTTGAATTGGGATGGTGAA+AGG + chr4_1:57740419-57740438 None:intergenic 40.0%
ACCTTTGATTGAAGCGTGTT+CGG - chr4_1:57740856-57740875 Msa0558720:intron 40.0%
CTGTTCGGGAATACAAACAA+CGG + chr4_1:57741174-57741193 None:intergenic 40.0%
CAGATAGTTTAGACCTGTTC+GGG + chr4_1:57741188-57741207 None:intergenic 40.0%
GCAGATAGTTTAGACCTGTT+CGG + chr4_1:57741189-57741208 None:intergenic 40.0%
! TGTGTTTGTTGCTCTATGCT+TGG - chr4_1:57741313-57741332 Msa0558720:CDS 40.0%
TTTGTTGCTCTATGCTTGGT+TGG - chr4_1:57741317-57741336 Msa0558720:CDS 40.0%
TTGTTGCTCTATGCTTGGTT+GGG - chr4_1:57741318-57741337 Msa0558720:CDS 40.0%
! GACTCATCTACATTTTGCAC+CGG + chr4_1:57741371-57741390 None:intergenic 40.0%
! CTTCTGAGGATTGCTATTAG+TGG + chr4_1:57741447-57741466 None:intergenic 40.0%
CTTAGCATTGTTATCCTCCT+TGG + chr4_1:57741507-57741526 None:intergenic 40.0%
!! ATAACAGGGTTGTTTTCGGA+CGG + chr4_1:57741530-57741549 None:intergenic 40.0%
TCTTCAGGAGACTTATCTTC+AGG + chr4_1:57741587-57741606 None:intergenic 40.0%
TTTCTCGCTCTCATCAGAAT+CGG + chr4_1:57741762-57741781 None:intergenic 40.0%
GAAGAAAAGGCAGATCAAAG+TGG - chr4_1:57741869-57741888 Msa0558720:CDS 40.0%
!! CTCATTAGAACCCTGGTTTT+TGG + chr4_1:57741945-57741964 None:intergenic 40.0%
! TTTCATTCAGAAGCTCTGAC+TGG + chr4_1:57741985-57742004 None:intergenic 40.0%
!!! CTTGGAGGATTTTTGAGACT+CGG + chr4_1:57742062-57742081 None:intergenic 40.0%
AAATCCTCCAAGCAATCTAC+CGG - chr4_1:57742070-57742089 Msa0558720:intron 40.0%
TTGACAACTTGAAGGCGATT+CGG - chr4_1:57742146-57742165 Msa0558720:CDS 40.0%
GCGTTTATATCCTTCAGGAA+GGG + chr4_1:57742245-57742264 None:intergenic 40.0%
ATTGGGCGTTTATATCCTTC+AGG + chr4_1:57742250-57742269 None:intergenic 40.0%
GATATAAACGCCCAATCGAA+TGG - chr4_1:57742254-57742273 Msa0558720:CDS 40.0%
!! TGTACCTTCTCTCTGCTTTT+GGG + chr4_1:57742280-57742299 None:intergenic 40.0%
! TTGTACCTTCTCTCTGCTTT+TGG + chr4_1:57742281-57742300 None:intergenic 40.0%
TATTCAGCAAGCTTAGTGTG+TGG + chr4_1:57742399-57742418 None:intergenic 40.0%
!! CACTAAGCTTGCTGAATACA+AGG - chr4_1:57742401-57742420 Msa0558720:intron 40.0%
!! CTAAGCTTGCTGAATACAAG+GGG - chr4_1:57742403-57742422 Msa0558720:intron 40.0%
CTGTAACTTTCACCCAATTC+TGG + chr4_1:57742431-57742450 None:intergenic 40.0%
CAGAATTGGGTGAAAGTTAC+AGG - chr4_1:57742429-57742448 Msa0558720:intron 40.0%
CAATTCTGCCTAGCAATTCT+AGG + chr4_1:57742884-57742903 None:intergenic 40.0%
ACACGTGTGATATTGGATGT+TGG - chr4_1:57742988-57743007 Msa0558720:intron 40.0%
GTGATATTGGATGTTGGATG+CGG - chr4_1:57742994-57743013 Msa0558720:intron 40.0%
TCAAATACTCTAGCAGGGAA+GGG + chr4_1:57743165-57743184 None:intergenic 40.0%
ATCAAATACTCTAGCAGGGA+AGG + chr4_1:57743166-57743185 None:intergenic 40.0%
TGGCATCAAATACTCTAGCA+GGG + chr4_1:57743170-57743189 None:intergenic 40.0%
ATGGCATCAAATACTCTAGC+AGG + chr4_1:57743171-57743190 None:intergenic 40.0%
! GCATTTCACCAGCATCATTT+TGG - chr4_1:57743327-57743346 Msa0558720:CDS 40.0%
ACTATTTGTGCACATGTAGG+TGG - chr4_1:57743407-57743426 Msa0558720:CDS 40.0%
!! TTGAATAGAGTATTGCGACC+TGG - chr4_1:57743446-57743465 Msa0558720:CDS 40.0%
TGCCCGAAGATGTAGAAATA+TGG - chr4_1:57743510-57743529 Msa0558720:CDS 40.0%
AGAGCCTTCATTTCTGTAGA+CGG + chr4_1:57743615-57743634 None:intergenic 40.0%
AAAAGCAATGTGTTGGGAAG+TGG - chr4_1:57743638-57743657 Msa0558720:CDS 40.0%
AAAAAATACCAGGCGGCATT+AGG + chr4_1:57743786-57743805 None:intergenic 40.0%
TGATATTCCTCTTTCATCGC+AGG - chr4_1:57743880-57743899 Msa0558720:CDS 40.0%
TTGTGCATGCAACTTTGCAA+TGG + chr4_1:57743912-57743931 None:intergenic 40.0%
TTACTGCTGATCATGAACAC+TGG - chr4_1:57744060-57744079 Msa0558720:CDS 40.0%
! TAAATGGGATTGGCATTCAG+TGG - chr4_1:57744108-57744127 Msa0558720:exon 40.0%
GACATGAGATCAGTTTATGG+AGG - chr4_1:57744152-57744171 Msa0558720:intron 40.0%
TGTCAAACACAGGGAAGTAA+TGG + chr4_1:57744227-57744246 None:intergenic 40.0%
!! AACAGAAGGTGTCAAACACA+GGG + chr4_1:57744236-57744255 None:intergenic 40.0%
!! AAACAGAAGGTGTCAAACAC+AGG + chr4_1:57744237-57744256 None:intergenic 40.0%
!!! ACCTTCTGTTTTTTGGATCC+AGG - chr4_1:57744246-57744265 Msa0558720:intron 40.0%
ACCTGGATCCAAAAAACAGA+AGG + chr4_1:57744250-57744269 None:intergenic 40.0%
TTGGGTAATGAATGTCGTTC+CGG - chr4_1:57744298-57744317 Msa0558720:intron 40.0%
TGAAGTAGATCATAGGACCT+GGG + chr4_1:57744410-57744429 None:intergenic 40.0%
ATGAAGTAGATCATAGGACC+TGG + chr4_1:57744411-57744430 None:intergenic 40.0%
TCTACTGTCTCCAATTCTGT+AGG + chr4_1:57744765-57744784 None:intergenic 40.0%
GAGACAGTAGAGTATGCTAT+TGG - chr4_1:57744774-57744793 Msa0558720:intron 40.0%
AGAAACAAGCTTCCATACAG+TGG + chr4_1:57744984-57745003 None:intergenic 40.0%
!! TTGTGGTGTTGTAACGCATG+AGG + chr4_1:57740477-57740496 None:intergenic 45.0%
! CACGCTTCAATCAAAGGTGT+AGG + chr4_1:57740854-57740873 None:intergenic 45.0%
ACCGAACACGCTTCAATCAA+AGG + chr4_1:57740860-57740879 None:intergenic 45.0%
CGTTGTTTGTATTCCCGAAC+AGG - chr4_1:57741172-57741191 Msa0558720:intron 45.0%
GATGACATCGTCTGTAGTTC+CGG - chr4_1:57741349-57741368 Msa0558720:CDS 45.0%
!! GGGCATAACAGGGTTGTTTT+CGG + chr4_1:57741534-57741553 None:intergenic 45.0%
GAAAACAACCCTGTTATGCC+CGG - chr4_1:57741533-57741552 Msa0558720:intron 45.0%
GATTTCTCTTCCTGCTTTCC+GGG + chr4_1:57741554-57741573 None:intergenic 45.0%
CGATTTCTCTTCCTGCTTTC+CGG + chr4_1:57741555-57741574 None:intergenic 45.0%
CGGAAAGCAGGAAGAGAAAT+CGG - chr4_1:57741553-57741572 Msa0558720:intron 45.0%
CTTCTCACTCTCGTCAGAAT+CGG + chr4_1:57741735-57741754 None:intergenic 45.0%
GTAACCAAGAGTCCGATGAA+AGG - chr4_1:57741891-57741910 Msa0558720:CDS 45.0%
TAGACCTTTCATCGGACTCT+TGG + chr4_1:57741898-57741917 None:intergenic 45.0%
TCTAATGAGCTACTCCCTTC+TGG - chr4_1:57741956-57741975 Msa0558720:intron 45.0%
CTAATGAGCTACTCCCTTCT+GGG - chr4_1:57741957-57741976 Msa0558720:intron 45.0%
TAATGAGCTACTCCCTTCTG+GGG - chr4_1:57741958-57741977 Msa0558720:intron 45.0%
AATCCTCCAAGCAATCTACC+GGG - chr4_1:57742071-57742090 Msa0558720:intron 45.0%
ATTGAACCCGGTAGATTGCT+TGG + chr4_1:57742080-57742099 None:intergenic 45.0%
AGCAATCTACCGGGTTCAAT+TGG - chr4_1:57742080-57742099 Msa0558720:intron 45.0%
GCAGAGTTTCCAATTGAACC+CGG + chr4_1:57742092-57742111 None:intergenic 45.0%
AAACTCTGCAATGTCACTGC+CGG - chr4_1:57742103-57742122 Msa0558720:intron 45.0%
CAAGGCATGGAATGTAGTCA+GGG + chr4_1:57742129-57742148 None:intergenic 45.0%
TCAAGGCATGGAATGTAGTC+AGG + chr4_1:57742130-57742149 None:intergenic 45.0%
TCCATGCCTTGACAACTTGA+AGG - chr4_1:57742138-57742157 Msa0558720:CDS 45.0%
!! GAATCGCCTTCAAGTTGTCA+AGG + chr4_1:57742147-57742166 None:intergenic 45.0%
GGCGTTTATATCCTTCAGGA+AGG + chr4_1:57742246-57742265 None:intergenic 45.0%
! TGCTTTTGGGCCATTCGATT+GGG + chr4_1:57742267-57742286 None:intergenic 45.0%
AAGCTTAGTGTGTGGAACGT+TGG + chr4_1:57742391-57742410 None:intergenic 45.0%
!! AATACAAGGGGCACCAGAAT+TGG - chr4_1:57742415-57742434 Msa0558720:intron 45.0%
!! ATACAAGGGGCACCAGAATT+GGG - chr4_1:57742416-57742435 Msa0558720:intron 45.0%
!! GAGTACCTTACTTTTCCTGG+TGG - chr4_1:57742453-57742472 Msa0558720:intron 45.0%
!! TACCTTACTTTTCCTGGTGG+TGG - chr4_1:57742456-57742475 Msa0558720:intron 45.0%
TTCCACCACCAGGAAAAGTA+AGG + chr4_1:57742461-57742480 None:intergenic 45.0%
GGTGGAACCCAATTCAAACA+CGG - chr4_1:57742474-57742493 Msa0558720:intron 45.0%
AAGCGCACCGTGTTTGAATT+GGG + chr4_1:57742484-57742503 None:intergenic 45.0%
AGTCTGTACCTGATATTGCC+TGG - chr4_1:57742956-57742975 Msa0558720:CDS 45.0%
GTCTGTACCTGATATTGCCT+GGG - chr4_1:57742957-57742976 Msa0558720:CDS 45.0%
TCTGTACCTGATATTGCCTG+GGG - chr4_1:57742958-57742977 Msa0558720:CDS 45.0%
AAAGAGAAAGCCACCAAAGC+TGG + chr4_1:57743025-57743044 None:intergenic 45.0%
TCCTGCTATATCTGCTGTGA+TGG - chr4_1:57743125-57743144 Msa0558720:CDS 45.0%
CCTGCTATATCTGCTGTGAT+GGG - chr4_1:57743126-57743145 Msa0558720:CDS 45.0%
TCTACAGCGTGCACAATGAA+TGG + chr4_1:57743190-57743209 None:intergenic 45.0%
AGAGTTCCGTGGCATATAGA+AGG - chr4_1:57743207-57743226 Msa0558720:CDS 45.0%
TGTAGGTGGCAAACTTCTCT+TGG - chr4_1:57743421-57743440 Msa0558720:CDS 45.0%
!! AATAGAGTATTGCGACCTGG+TGG - chr4_1:57743449-57743468 Msa0558720:CDS 45.0%
GACCTGGTGGTTTCTTTGTA+TGG - chr4_1:57743462-57743481 Msa0558720:CDS 45.0%
GACCATACAAAGAAACCACC+AGG + chr4_1:57743467-57743486 None:intergenic 45.0%
TCGGGCAGCTTCTGATAAAT+AGG + chr4_1:57743497-57743516 None:intergenic 45.0%
AGCCTTCATTTCTGTAGACG+GGG + chr4_1:57743613-57743632 None:intergenic 45.0%
GAGCCTTCATTTCTGTAGAC+GGG + chr4_1:57743614-57743633 None:intergenic 45.0%
GAATGTTCCTGCGATGAAAG+AGG + chr4_1:57743890-57743909 None:intergenic 45.0%
CAGTTAGTTCGACAGAACGT+GGG - chr4_1:57743937-57743956 Msa0558720:CDS 45.0%
!! GGTGATTTGCTCAGTCTTTC+TGG + chr4_1:57743984-57744003 None:intergenic 45.0%
GACTGAGCAAATCACCTTAC+TGG - chr4_1:57743988-57744007 Msa0558720:CDS 45.0%
GCAGTAAAATCTTCAGGAGC+AGG + chr4_1:57744047-57744066 None:intergenic 45.0%
TGAAACGTTGTTTGTGGCAC+AGG - chr4_1:57744550-57744569 Msa0558720:intron 45.0%
CCTGAGAATCCTATCAACCT+CGG + chr4_1:57744598-57744617 None:intergenic 45.0%
TAATGGTCTCAGCAGTGTCT+CGG + chr4_1:57744641-57744660 None:intergenic 45.0%
AGACACTGCTGAGACCATTA+AGG - chr4_1:57744641-57744660 Msa0558720:intron 45.0%
! CTTGGTGACATCTATGCAGT+GGG - chr4_1:57744674-57744693 Msa0558720:intron 45.0%
TATGTGTCCAGAAGTCCATG+TGG - chr4_1:57744736-57744755 Msa0558720:intron 45.0%
ATGAGATGCCAACACGAGTT+AGG - chr4_1:57744845-57744864 Msa0558720:five_prime_UTR 45.0%
!! GTAACATGGTGCCGTAGTTA+AGG - chr4_1:57745010-57745029 Msa0558720:five_prime_UTR 45.0%
!!! TATTTTTTATTTTTTTTCTT+TGG - chr4_1:57744942-57744961 Msa0558720:five_prime_UTR 5.0%
CAGAGACTAGGAGAGAGTGA+CGG + chr4_1:57740201-57740220 None:intergenic 50.0%
!! GGGCAATGGGTTAAGGGAAA+AGG + chr4_1:57740286-57740305 None:intergenic 50.0%
!! GGAATGGGGCAATGGGTTAA+GGG + chr4_1:57740292-57740311 None:intergenic 50.0%
! TGTGATGGGAATGGGGCAAT+GGG + chr4_1:57740299-57740318 None:intergenic 50.0%
! ATGTGATGGGAATGGGGCAA+TGG + chr4_1:57740300-57740319 None:intergenic 50.0%
TCCGTCGAGTTACTGCTCAA+CGG - chr4_1:57741280-57741299 Msa0558720:CDS 50.0%
ACCGTTGAGCAGTAACTCGA+CGG + chr4_1:57741284-57741303 None:intergenic 50.0%
CTCTATGCTTGGTTGGGCTA+TGG - chr4_1:57741324-57741343 Msa0558720:CDS 50.0%
ACAGAGCGAGGTGAAGAATC+AGG - chr4_1:57741412-57741431 Msa0558720:CDS 50.0%
! ATCCTCCTTGGTAGCTTCCT+CGG + chr4_1:57741495-57741514 None:intergenic 50.0%
GGAGTAGCTCATTAGAACCC+TGG + chr4_1:57741952-57741971 None:intergenic 50.0%
AATGAGCTACTCCCTTCTGG+GGG - chr4_1:57741959-57741978 Msa0558720:intron 50.0%
!! GCCTTCAAGTTGTCAAGGCA+TGG + chr4_1:57742142-57742161 None:intergenic 50.0%
!! CTGCTTTTGGGCCATTCGAT+TGG + chr4_1:57742268-57742287 None:intergenic 50.0%
ATGGCCCAAAAGCAGAGAGA+AGG - chr4_1:57742273-57742292 Msa0558720:CDS 50.0%
!! GGCGAGTACCTTACTTTTCC+TGG - chr4_1:57742450-57742469 Msa0558720:intron 50.0%
TTGAATTGGGTTCCACCACC+AGG + chr4_1:57742471-57742490 None:intergenic 50.0%
GAAGCGCACCGTGTTTGAAT+TGG + chr4_1:57742485-57742504 None:intergenic 50.0%
TGTTTGCCCCAGGCAATATC+AGG + chr4_1:57742967-57742986 None:intergenic 50.0%
CCCATCACAGCAGATATAGC+AGG + chr4_1:57743129-57743148 None:intergenic 50.0%
GACCCCGTCTACAGAAATGA+AGG - chr4_1:57743608-57743627 Msa0558720:CDS 50.0%
GGAAGTGGTGTCTATCAGCA+GGG - chr4_1:57743653-57743672 Msa0558720:CDS 50.0%
ATGATGATCCTAATGCCGCC+TGG - chr4_1:57743775-57743794 Msa0558720:CDS 50.0%
CCACGTTCTGTCGAACTAAC+TGG + chr4_1:57743939-57743958 None:intergenic 50.0%
CCAGTTAGTTCGACAGAACG+TGG - chr4_1:57743936-57743955 Msa0558720:CDS 50.0%
GTCCAATGTGCGCAATGTCA+TGG - chr4_1:57744130-57744149 Msa0558720:five_prime_UTR 50.0%
GTCCATGACATTGCGCACAT+TGG + chr4_1:57744135-57744154 None:intergenic 50.0%
! CAGGTTTGCAGCAGCTTTGA+GGG - chr4_1:57744265-57744284 Msa0558720:intron 50.0%
! GTTTGAAGCTGTAGTTGCCG+AGG - chr4_1:57744578-57744597 Msa0558720:intron 50.0%
! CTGTAGTTGCCGAGGTTGAT+AGG - chr4_1:57744586-57744605 Msa0558720:intron 50.0%
!! CCGAGGTTGATAGGATTCTC+AGG - chr4_1:57744595-57744614 Msa0558720:intron 50.0%
TGATAGGATTCTCAGGCCTG+AGG - chr4_1:57744602-57744621 Msa0558720:intron 50.0%
GATAGGATTCTCAGGCCTGA+GGG - chr4_1:57744603-57744622 Msa0558720:intron 50.0%
CGGACAATAAGCTTTCCCTC+AGG + chr4_1:57744621-57744640 None:intergenic 50.0%
TGCTGAGACCATTAAGGAGC+TGG - chr4_1:57744647-57744666 Msa0558720:intron 50.0%
CAAGCTCTCCAGCTCCTTAA+TGG + chr4_1:57744658-57744677 None:intergenic 50.0%
CATTAAGGAGCTGGAGAGCT+TGG - chr4_1:57744656-57744675 Msa0558720:intron 50.0%
! GCTTGGTGACATCTATGCAG+TGG - chr4_1:57744673-57744692 Msa0558720:intron 50.0%
!! GGGAATGGGGCAATGGGTTA+AGG + chr4_1:57740293-57740312 None:intergenic 55.0%
AAAGCGCGTGAAGCGAGAAG+TGG + chr4_1:57740593-57740612 None:intergenic 55.0%
TGAGGTGAAAGGACAGAGCG+AGG - chr4_1:57741400-57741419 Msa0558720:CDS 55.0%
TAAGAAGGGAGATCTGCCCG+AGG - chr4_1:57741475-57741494 Msa0558720:intron 55.0%
! TCCTCCTTGGTAGCTTCCTC+GGG + chr4_1:57741494-57741513 None:intergenic 55.0%
CCTGCTTTCCGGGCATAACA+GGG + chr4_1:57741544-57741563 None:intergenic 55.0%
TCCTGCTTTCCGGGCATAAC+AGG + chr4_1:57741545-57741564 None:intergenic 55.0%
GAACCCGGTAGATTGCTTGG+AGG + chr4_1:57742077-57742096 None:intergenic 55.0%
GCATGGAATGTAGTCAGGGC+CGG + chr4_1:57742125-57742144 None:intergenic 55.0%
AGGCAGGTAGGAGGATCTTC+AGG + chr4_1:57742217-57742236 None:intergenic 55.0%
ATCCTTCAGGAAGGGCGACA+AGG + chr4_1:57742237-57742256 None:intergenic 55.0%
CACACGTGTTTGTTTGCCCC+AGG + chr4_1:57742977-57742996 None:intergenic 55.0%
!! CTGCTGTGATGGGCACAAAG+AGG - chr4_1:57743136-57743155 Msa0558720:CDS 55.0%
GGGAAGTGGTGTCTATCAGC+AGG - chr4_1:57743652-57743671 Msa0558720:CDS 55.0%
CGACAGAACGTGGGTCACAA+TGG - chr4_1:57743946-57743965 Msa0558720:CDS 55.0%
AACGTGGGTCACAATGGCCA+GGG - chr4_1:57743952-57743971 Msa0558720:CDS 55.0%
CCTCAAAGCTGCTGCAAACC+TGG + chr4_1:57744267-57744286 None:intergenic 55.0%
CCAGGTTTGCAGCAGCTTTG+AGG - chr4_1:57744264-57744283 Msa0558720:intron 55.0%
TGTCGTTCCGGTAGACTCAC+CGG - chr4_1:57744310-57744329 Msa0558720:intron 55.0%
AGTGTGTCCGGTGAGTCTAC+CGG + chr4_1:57744320-57744339 None:intergenic 55.0%
GGTGACATCTATGCAGTGGG+AGG - chr4_1:57744677-57744696 Msa0558720:intron 55.0%
GTGTCCAGAAGTCCATGTGG+CGG - chr4_1:57744739-57744758 Msa0558720:intron 55.0%
CAATTCTGTAGGCCGCCACA+TGG + chr4_1:57744754-57744773 None:intergenic 55.0%
CATGTGGCGGCCTACAGAAT+TGG - chr4_1:57744752-57744771 Msa0558720:intron 55.0%
TCTGCCCGAGGAAGCTACCA+AGG - chr4_1:57741487-57741506 Msa0558720:intron 60.0%
CCCTGTTATGCCCGGAAAGC+AGG - chr4_1:57741541-57741560 Msa0558720:intron 60.0%
TTCAGGAAGGGCGACAAGGC+AGG + chr4_1:57742233-57742252 None:intergenic 60.0%
TGCCTTGTCGCCCTTCCTGA+AGG - chr4_1:57742232-57742251 Msa0558720:CDS 60.0%
GTGCACGCTGTAGAGTTCCG+TGG - chr4_1:57743196-57743215 Msa0558720:CDS 60.0%
GAACGTGGGTCACAATGGCC+AGG - chr4_1:57743951-57743970 Msa0558720:CDS 60.0%
ACGTGGGTCACAATGGCCAG+GGG - chr4_1:57743953-57743972 Msa0558720:CDS 60.0%
! AGTCTTTCTGGCCACTCCCC+TGG + chr4_1:57743972-57743991 None:intergenic 60.0%
TAGGCCGCCACATGGACTTC+TGG + chr4_1:57744746-57744765 None:intergenic 60.0%
GCCCGAGGAAGCTACCAAGG+AGG - chr4_1:57741490-57741509 Msa0558720:intron 65.0%
! GCTCTGACTGGCCCCCAGAA+GGG + chr4_1:57741973-57741992 None:intergenic 65.0%
! AGCTCTGACTGGCCCCCAGA+AGG + chr4_1:57741974-57741993 None:intergenic 65.0%
AGGGCGACAAGGCAGGTAGG+AGG + chr4_1:57742226-57742245 None:intergenic 65.0%
GGAAGGGCGACAAGGCAGGT+AGG + chr4_1:57742229-57742248 None:intergenic 65.0%
GGATGCGGCGTTGCCAGCTT+TGG - chr4_1:57743009-57743028 Msa0558720:intron 65.0%
! TGCGGCGTTGCCAGCTTTGG+TGG - chr4_1:57743012-57743031 Msa0558720:intron 65.0%
GGTCACAATGGCCAGGGGAG+TGG - chr4_1:57743958-57743977 Msa0558720:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 57740182 57745177 57740182 ID=Msa0558720;Name=Msa0558720
chr4_1 mRNA 57740182 57745177 57740182 ID=Msa0558720-mRNA-1;Parent=Msa0558720;Name=Msa0558720-mRNA-1;_AED=0.06;_eAED=0.06;_QI=405|1|1|1|0.87|0.77|9|356|826
chr4_1 exon 57740182 57740787 57740182 ID=Msa0558720-mRNA-1:exon:17521;Parent=Msa0558720-mRNA-1
chr4_1 exon 57740897 57741091 57740897 ID=Msa0558720-mRNA-1:exon:17520;Parent=Msa0558720-mRNA-1
chr4_1 exon 57741185 57741457 57741185 ID=Msa0558720-mRNA-1:exon:17519;Parent=Msa0558720-mRNA-1
chr4_1 exon 57741563 57741737 57741563 ID=Msa0558720-mRNA-1:exon:17518;Parent=Msa0558720-mRNA-1
chr4_1 exon 57741823 57741933 57741823 ID=Msa0558720-mRNA-1:exon:17517;Parent=Msa0558720-mRNA-1
chr4_1 exon 57742131 57742401 57742131 ID=Msa0558720-mRNA-1:exon:17516;Parent=Msa0558720-mRNA-1
chr4_1 exon 57742832 57742981 57742832 ID=Msa0558720-mRNA-1:exon:17515;Parent=Msa0558720-mRNA-1
chr4_1 exon 57743065 57744165 57743065 ID=Msa0558720-mRNA-1:exon:17514;Parent=Msa0558720-mRNA-1
chr4_1 exon 57744818 57745177 57744818 ID=Msa0558720-mRNA-1:exon:17513;Parent=Msa0558720-mRNA-1
chr4_1 five_prime_UTR 57744818 57745177 57744818 ID=Msa0558720-mRNA-1:five_prime_utr;Parent=Msa0558720-mRNA-1
chr4_1 five_prime_UTR 57744121 57744165 57744121 ID=Msa0558720-mRNA-1:five_prime_utr;Parent=Msa0558720-mRNA-1
chr4_1 CDS 57743065 57744120 57743065 ID=Msa0558720-mRNA-1:cds;Parent=Msa0558720-mRNA-1
chr4_1 CDS 57742832 57742981 57742832 ID=Msa0558720-mRNA-1:cds;Parent=Msa0558720-mRNA-1
chr4_1 CDS 57742131 57742401 57742131 ID=Msa0558720-mRNA-1:cds;Parent=Msa0558720-mRNA-1
chr4_1 CDS 57741823 57741933 57741823 ID=Msa0558720-mRNA-1:cds;Parent=Msa0558720-mRNA-1
chr4_1 CDS 57741563 57741737 57741563 ID=Msa0558720-mRNA-1:cds;Parent=Msa0558720-mRNA-1
chr4_1 CDS 57741185 57741457 57741185 ID=Msa0558720-mRNA-1:cds;Parent=Msa0558720-mRNA-1
chr4_1 CDS 57740897 57741091 57740897 ID=Msa0558720-mRNA-1:cds;Parent=Msa0558720-mRNA-1
chr4_1 CDS 57740538 57740787 57740538 ID=Msa0558720-mRNA-1:cds;Parent=Msa0558720-mRNA-1
chr4_1 three_prime_UTR 57740182 57740537 57740182 ID=Msa0558720-mRNA-1:three_prime_utr;Parent=Msa0558720-mRNA-1
Gene Sequence

>Msa0558720

ATGGCACAAGCGAGATATAGTAGAATAGACAATAAACGATCTCCGTCGAGTTACTGCTCAACGGTGACGATTGTTGTGTTTGTTGCTCTATGCTTGGTTGGGCTATGGATGATGACATCGTCTGTAGTTCCGGTGCAAAATGTAGATGAGTCGAATAAAAATGAGGTGAAAGGACAGAGCGAGGTGAAGAATCAGGCAACTGACACCACTAATAGCAATCCTCAGAAGTTTGAAGATAAGAAGGGAGATCTGCCCGAGGAAGCTACCAAGGAGGATAACAATGCTAAGCCGTCCGAAAACAACCCTGTTATGCCCGGAAAGCAGGAAGAGAAATCGGATGAAAAGCCTGAAGATAAGTCTCCTGAAGATACCAAGATGACATATACTGATCCAAATCAGAACAAGAAGACATCTGATTCGGATGAGAGCAATAACAAATCTGGTTCTGATGAGAGCAATAACAAATCTGGTTCTGATGAGGACAACAAGAAGTCCGATTCTGACGAGAGTGAGAAGAAGTCCGATTCTGATGAGAGCGAGAAAAAATCGGATTCAAACGATAATAAATCTGGTTCAGATGCAAGTGAAAATAAAAAGGATGAGTCGAGTGAAACAACAGATAGTAAGACAGAAGAAAAGGCAGATCAAAGTGGTAACCAAGAGTCCGATGAAAGGTCTAATGAGAAGAAAACAGATGAAAATACCAAAAACCAGGGTTCTAATGAGCTACTCCCTTCTGGGGGCCAGTCAGAGCTTCTGAATGAAACTACAACTCAAACTGGATCTTTTTCAACTCAGGCAGCAGAGTCAAAGTCTGAAACCGAGTCTCAAAAATCCTCCAAGCAATCTACCGGGTTCAATTGGAAACTCTGCAATGTCACTGCCGGCCCTGACTACATTCCATGCCTTGACAACTTGAAGGCGATTCGGAACCTTAAAACTACTAAACACTATGAACACAGAGAAAGGCAATGTCCTGAAGATCCTCCTACCTGCCTTGTCGCCCTTCCTGAAGGATATAAACGCCCAATCGAATGGCCCAAAAGCAGAGAGAAGATATGGTATTCCAACGTTCCACACACTAAGCTTGCTGAATACAAGGGGCACCAGAATTGGGTGAAAGTTACAGGCGAGTACCTTACTTTTCCTGGTGGTGGAACCCAATTCAAACACGGTGCGCTTCATTACATTGACACCATACAACAGTCTGTACCTGATATTGCCTGGGGCAAACAAACACGTGTGATATTGGATGTTGGATGCGGCGTTGCCAGCTTTGGTGGCTTTCTCTTTGAAAGAGATGTACTTGCAATGTCATTTGCACCAAAAGATGAACATGAAGCTCAGGTACAATTTGCACTTGAAAGGGGAATTCCTGCTATATCTGCTGTGATGGGCACAAAGAGGCTTCCCTTCCCTGCTAGAGTATTTGATGCCATTCATTGTGCACGCTGTAGAGTTCCGTGGCATATAGAAGGTGGCAAACTTCTCTTGGAGTTGAATAGAGTATTGCGACCTGGTGGTTTCTTTGTATGGTCTGCTACTCCTATTTATCAGAAGCTGCCCGAAGATGTAGAAATATGGAACGAAATGAAGGCTCTAACAAAAGCAATGTGTTGGGAAGTGGTGTCTATCAGCAGGGATAAACTTAATAAAGTTGGTATAGCTGTATACAAGAAGCCAACTTCTAATGAGTGTTATGAGAAACGTTCCAAGAATGAGCCTTCTATATGTCAAGACTATGATGATCCTAATGCCGCCTGGAACATTCCATTGCAAAGTTGCATGCACAAAGCGCCAGTTAGTTCGACAGAACGTGGGTCACAATGGCCAGGGGAGTGGCCAGAAAGACTGAGCAAATCACCTTACTGGTTATCAAATTCTGAAGTTGGAGTTTATGGAAAACCTGCTCCTGAAGATTTTACTGCTGATCATGAACACTGGAAACGTGTAGTGTCCAAGTCTTATCTAAATGGGATTGGCATTCAGTGGTCCAATGTGCGCAATGTCATGGACATGAGATCAGTTTATGGAGGGTTTGCAGCAGCTTTGAGGGATTTGAAAATTTGGGTAATGAATGTCGTTCCGGTAGACTCACCGGACACACTTCCAATTATTTATGAACGTGGTCTGTTTGGCATATATCATGATTGGTGTGAATCATTTAGCACATATCCCAGGTCCTATGATCTACTTCATGCAGATCATCTGTTTTCAAAGCTTAAGAAAAGGTGCAAGTTTGAAGCTGTAGTTGCCGAGGTTGATAGGATTCTCAGGCCTGAGGGAAAGCTTATTGTCCGAGACACTGCTGAGACCATTAAGGAGCTGGAGAGCTTGGTGACATCTATGCAGTGGGAGGTTCGTATGACTTACACTAAAGATTTGCAGGGCATTTTATGTGTCCAGAAGTCCATGTGGCGGCCTACAGAATTGGAGACAGTAGAGTATGCTATTGGCAGCATACCGAATTCGAGACAGTAG
Protein sequence

>Msa0558720

MAQARYSRIDNKRSPSSYCSTVTIVVFVALCLVGLWMMTSSVVPVQNVDESNKNEVKGQSEVKNQATDTTNSNPQKFEDKKGDLPEEATKEDNNAKPSENNPVMPGKQEEKSDEKPEDKSPEDTKMTYTDPNQNKKTSDSDESNNKSGSDESNNKSGSDEDNKKSDSDESEKKSDSDESEKKSDSNDNKSGSDASENKKDESSETTDSKTEEKADQSGNQESDERSNEKKTDENTKNQGSNELLPSGGQSELLNETTTQTGSFSTQAAESKSETESQKSSKQSTGFNWKLCNVTAGPDYIPCLDNLKAIRNLKTTKHYEHRERQCPEDPPTCLVALPEGYKRPIEWPKSREKIWYSNVPHTKLAEYKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDTIQQSVPDIAWGKQTRVILDVGCGVASFGGFLFERDVLAMSFAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPARVFDAIHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWNEMKALTKAMCWEVVSISRDKLNKVGIAVYKKPTSNECYEKRSKNEPSICQDYDDPNAAWNIPLQSCMHKAPVSSTERGSQWPGEWPERLSKSPYWLSNSEVGVYGKPAPEDFTADHEHWKRVVSKSYLNGIGIQWSNVRNVMDMRSVYGGFAAALRDLKIWVMNVVPVDSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLKKRCKFEAVVAEVDRILRPEGKLIVRDTAETIKELESLVTSMQWEVRMTYTKDLQGILCVQKSMWRPTELETVEYAIGSIPNSRQ*