AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0632180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0632180 MtrunA17_Chr8g0384431 93.653 835 27 2 1 835 1 809 0.0 1610
Msa0632180 MtrunA17_Chr3g0130381 72.892 830 180 9 1 827 1 788 0.0 1226
Msa0632180 MtrunA17_Chr3g0125511 56.250 832 283 10 1 828 1 755 0.0 946
Msa0632180 MtrunA17_Chr8g0372471 54.834 755 286 11 77 817 179 892 0.0 832
Msa0632180 MtrunA17_Chr5g0437501 53.005 549 238 5 279 820 75 610 0.0 624
Msa0632180 MtrunA17_Chr3g0113981 54.981 522 220 5 296 817 164 670 0.0 608
Msa0632180 MtrunA17_Chr1g0155141 50.000 528 242 5 292 817 194 701 0.0 590
Msa0632180 MtrunA17_Chr1g0159741 48.221 506 242 9 297 794 141 634 1.03e-164 493
Msa0632180 MtrunA17_Chr3g0112341 44.404 554 279 11 261 798 107 647 5.21e-164 492
Msa0632180 MtrunA17_Chr5g0404771 46.691 559 237 8 21 537 20 559 8.42e-163 485
Msa0632180 MtrunA17_Chr1g0183721 44.796 538 253 14 307 819 71 589 8.03e-148 447
Msa0632180 MtrunA17_Chr5g0435751 42.058 554 275 12 258 798 79 599 1.27e-146 445
Msa0632180 MtrunA17_Chr1g0167381 44.465 533 262 13 307 819 101 619 1.42e-146 445
Msa0632180 MtrunA17_Chr1g0187601 42.722 529 269 13 307 815 100 614 2.02e-140 429
Msa0632180 MtrunA17_Chr8g0350351 41.794 524 270 14 307 815 97 600 4.08e-139 425
Msa0632180 MtrunA17_Chr5g0404761 63.251 283 100 2 540 822 1 279 1.32e-138 412
Msa0632180 MtrunA17_Chr7g0246681 40.909 528 271 14 307 816 84 588 1.56e-137 421
Msa0632180 MtrunA17_Chr4g0055031 42.301 539 270 15 297 815 86 603 1.37e-133 411
Msa0632180 MtrunA17_Chr6g0472571 42.300 513 256 18 307 799 114 606 1.82e-132 409
Msa0632180 MtrunA17_Chr8g0369481 40.643 529 275 13 307 815 79 588 1.50e-129 400
Msa0632180 MtrunA17_Chr8g0388881 40.335 538 281 18 300 815 101 620 4.50e-129 400
Msa0632180 MtrunA17_Chr7g0214551 40.884 543 285 12 269 795 22 544 5.27e-128 395
Msa0632180 MtrunA17_Chr5g0409411 40.323 558 293 14 284 818 53 593 1.91e-127 395
Msa0632180 MtrunA17_Chr8g0361791 41.487 511 266 14 307 803 93 584 3.03e-127 394
Msa0632180 MtrunA17_Chr1g0203741 39.706 544 290 16 271 795 69 593 2.66e-126 393
Msa0632180 MtrunA17_Chr7g0246701 40.613 522 270 17 299 799 103 605 1.88e-124 388
Msa0632180 MtrunA17_Chr8g0350391 39.706 544 276 20 307 819 114 636 1.82e-123 385
Msa0632180 MtrunA17_Chr3g0092501 40.727 523 271 14 307 815 94 591 2.42e-123 384
Msa0632180 MtrunA17_Chr5g0416991 40.875 526 275 13 307 815 93 599 2.94e-123 384
Msa0632180 MtrunA17_Chr1g0171781 40.684 526 278 15 307 815 95 603 6.24e-122 380
Msa0632180 MtrunA17_Chr5g0426281 32.824 524 296 14 310 799 151 652 1.33e-84 284
Msa0632180 MtrunA17_Chr3g0115931 33.208 533 291 17 307 799 163 670 1.19e-83 281
Msa0632180 MtrunA17_Chr4g0043131 50.735 136 61 3 673 805 36 168 3.96e-38 140
Msa0632180 MtrunA17_Chr4g0043121 28.662 314 197 10 307 605 95 396 6.10e-36 141
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0632180 AT5G64030.1 63.958 849 265 9 1 828 1 829 0.0 1125
Msa0632180 AT1G29470.1 59.228 829 278 12 1 828 1 770 0.0 998
Msa0632180 AT1G29470.2 59.228 829 278 12 1 828 1 770 0.0 998
Msa0632180 AT2G34300.2 57.762 831 287 11 1 828 1 770 0.0 981
Msa0632180 AT2G34300.3 57.762 831 287 11 1 828 1 770 0.0 981
Msa0632180 AT2G34300.1 57.762 831 287 11 1 828 1 770 0.0 981
Msa0632180 AT3G51070.1 53.408 895 335 10 1 817 1 891 0.0 967
Msa0632180 AT3G51070.2 53.541 833 305 10 1 755 1 829 0.0 893
Msa0632180 AT2G40280.1 54.735 528 220 6 295 821 78 587 0.0 620
Msa0632180 AT3G56080.1 53.704 540 228 7 282 817 89 610 0.0 613
Msa0632180 AT1G19430.1 49.333 525 245 6 295 817 219 724 0.0 577
Msa0632180 AT1G19430.3 49.333 525 245 6 295 817 219 724 0.0 577
Msa0632180 AT3G56080.2 55.042 476 196 6 282 753 89 550 0.0 559
Msa0632180 AT5G06050.1 44.425 565 277 14 261 803 99 648 2.71e-169 506
Msa0632180 AT1G77260.1 44.186 559 283 10 252 794 86 631 4.34e-163 489
Msa0632180 AT2G39750.1 45.009 531 270 11 274 798 157 671 7.76e-163 490
Msa0632180 AT3G23300.2 43.609 532 267 14 307 819 88 605 1.82e-142 434
Msa0632180 AT3G23300.1 43.609 532 267 14 307 819 88 605 1.82e-142 434
Msa0632180 AT4G14360.1 43.045 532 270 14 307 819 85 602 8.71e-142 432
Msa0632180 AT4G14360.2 43.045 532 270 14 307 819 85 602 8.71e-142 432
Msa0632180 AT5G14430.1 46.733 505 236 13 307 795 89 576 2.75e-140 429
Msa0632180 AT1G04430.1 42.778 540 263 17 309 819 95 617 6.96e-139 426
Msa0632180 AT1G04430.3 42.778 540 263 17 309 819 95 617 6.96e-139 426
Msa0632180 AT1G04430.2 42.778 540 263 17 309 819 95 617 6.96e-139 426
Msa0632180 AT5G14430.2 46.139 505 239 13 307 795 89 576 6.14e-138 423
Msa0632180 AT4G00740.1 39.885 524 280 11 308 816 91 594 1.75e-137 421
Msa0632180 AT4G00740.2 39.885 524 280 11 308 816 91 594 1.75e-137 421
Msa0632180 AT1G31850.1 41.541 532 268 13 307 815 85 596 3.35e-134 413
Msa0632180 AT1G31850.2 41.541 532 268 13 307 815 85 596 3.35e-134 413
Msa0632180 AT1G31850.4 41.541 532 268 13 307 815 85 596 3.35e-134 413
Msa0632180 AT1G31850.3 41.541 532 268 13 307 815 85 596 3.35e-134 413
Msa0632180 AT5G04060.1 43.264 527 260 13 307 815 92 597 7.36e-133 409
Msa0632180 AT4G19120.1 41.495 535 264 13 307 815 79 590 3.42e-132 407
Msa0632180 AT4G19120.2 41.495 535 264 13 307 815 79 590 3.42e-132 407
Msa0632180 AT1G33170.1 41.808 531 272 14 307 815 119 634 9.03e-131 405
Msa0632180 AT4G10440.1 41.061 509 270 12 307 799 102 596 2.55e-130 404
Msa0632180 AT1G26850.2 41.634 514 267 15 307 803 95 592 1.08e-129 401
Msa0632180 AT1G26850.1 41.634 514 267 15 307 803 95 592 1.08e-129 401
Msa0632180 AT3G10200.1 42.659 504 255 12 307 796 81 564 1.53e-128 397
Msa0632180 AT1G19430.2 44.444 396 200 5 295 689 219 595 1.27e-126 393
Msa0632180 AT2G45750.1 40.698 516 267 17 307 799 96 595 6.73e-125 389
Msa0632180 AT4G18030.1 40.850 541 278 15 296 815 84 603 4.49e-124 387
Msa0632180 AT4G00750.1 42.394 493 245 17 329 798 125 601 2.61e-123 385
Msa0632180 AT2G43200.2 40.945 508 267 14 307 798 100 590 7.65e-122 381
Msa0632180 AT2G43200.1 40.945 508 267 14 307 798 100 590 7.65e-122 381
Msa0632180 AT3G10200.2 43.035 481 240 12 307 773 81 541 1.01e-121 380
Msa0632180 AT4G19120.3 41.667 444 213 12 307 727 79 499 2.80e-103 328
Msa0632180 AT1G26850.3 40.241 415 216 14 307 705 95 493 3.11e-88 289
Msa0632180 AT1G78240.1 31.099 537 309 16 300 799 149 661 5.71e-83 280
Msa0632180 AT1G78240.2 31.099 537 309 16 300 799 149 661 5.71e-83 280
Msa0632180 AT1G13860.4 32.844 545 299 16 307 816 90 602 1.02e-77 264
Msa0632180 AT1G13860.3 32.844 545 299 16 307 816 90 602 1.02e-77 264
Msa0632180 AT1G13860.1 32.844 545 299 16 307 816 90 602 1.02e-77 264
Msa0632180 AT1G13860.5 32.844 545 299 16 307 816 90 602 1.02e-77 264
Msa0632180 AT1G13860.2 34.762 420 231 11 422 816 45 446 1.50e-70 239
Msa0632180 AT2G03480.1 32.270 533 306 17 308 812 96 601 4.75e-69 240
Msa0632180 AT2G03480.2 32.700 526 302 16 308 812 96 590 7.68e-69 239
Msa0632180 AT2G03480.3 31.660 259 162 7 308 553 96 352 4.64e-32 130

Find 257 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCTGAAGTTGGAGTTTA+TGG 0.092408 4_3:-15829075 Msa0632180:CDS
GGTGATTTGCTCAGTCTTTC+TGG 0.096552 4_3:+15829111 None:intergenic
CGATTTCTCTTCCTGCTTTC+CGG 0.102196 4_3:+15831566 None:intergenic
TTGTACCTTCTCTCTGCTTT+TGG 0.173033 4_3:+15830813 None:intergenic
TCTAATGAGCTACTCCCTTC+TGG 0.179725 4_3:-15831135 Msa0632180:CDS
CTTTGAGGGATTTGAAAATT+TGG 0.180019 4_3:-15828813 Msa0632180:CDS
TATTCTTGACTACCAAAATT+TGG 0.212050 4_3:-15827988 Msa0632180:three_prime_UTR
GTGTCCAAGTCTTATCTAAA+TGG 0.222273 4_3:-15829000 Msa0632180:CDS
GATGTCTTCTTGTTCTGATT+TGG 0.232136 4_3:+15831489 None:intergenic
ACAAAACTAATACCAAATTT+TGG 0.233814 4_3:+15827976 None:intergenic
TATACGAAAGATGATGATTT+TGG 0.244828 4_3:+15832739 None:intergenic
TCCTGCTTTCCGGGCATAAC+AGG 0.246833 4_3:+15831576 None:intergenic
GATTTCTCTTCCTGCTTTCC+GGG 0.249825 4_3:+15831567 None:intergenic
TGAGCTTCATGTTCATCTTT+TGG 0.251202 4_3:+15830017 None:intergenic
AGGAATTCTGATCACATTCT+TGG 0.266568 4_3:-15828059 Msa0632180:three_prime_UTR
AGATCTGCTTCTTTCATAAT+AGG 0.272763 4_3:-15832599 Msa0632180:intron
TTTGGTGGGGTAAAGTTGAT+AGG 0.277208 4_3:+15832757 None:intergenic
CTGTAACTTTCACCCAATTC+TGG 0.287508 4_3:+15830664 None:intergenic
CAAGCTCTCCAGCTCCTTAA+TGG 0.288378 4_3:+15828437 None:intergenic
CAAACAAACACGTGTGATAT+TGG 0.295996 4_3:-15830111 Msa0632180:CDS
AGACCACGTTCATAAATAAT+TGG 0.297024 4_3:+15828751 None:intergenic
AATACAAGGGGCACCAGAAT+TGG 0.314022 4_3:-15830677 Msa0632180:CDS
TGAGAAATGAAATCTTGAAT+TGG 0.314158 4_3:+15832691 None:intergenic
ACATATAGAAGGCTCATTCT+TGG 0.315163 4_3:+15829347 None:intergenic
TTTGAGGGATTTGAAAATTT+GGG 0.322072 4_3:-15828812 Msa0632180:CDS
AGGAATGGGGCAATGGGTTA+AGG 0.323161 4_3:+15832828 None:intergenic
GACTTACACTAAAGATTTGC+AGG 0.324033 4_3:-15828385 Msa0632180:CDS
TAGGCCGCCACATGGACTTC+TGG 0.327048 4_3:+15828349 None:intergenic
GAAGCGCACCATGTTTGAAT+TGG 0.327189 4_3:+15830610 None:intergenic
TGTTTGCCCCAGGCAATATC+AGG 0.327849 4_3:+15830128 None:intergenic
GTTCCATATTTCTACATCTT+CGG 0.333336 4_3:+15829579 None:intergenic
TAATGATACATAACGAATAA+TGG 0.337904 4_3:+15828182 None:intergenic
ATCCTCCTTGGTAGCTTCCT+CGG 0.338678 4_3:+15831626 None:intergenic
GAACGAACGAAGAAAGAAAA+AGG 0.343097 4_3:+15832667 None:intergenic
ATGGACATGAGATCAGTTTA+TGG 0.344407 4_3:-15828943 Msa0632180:CDS
ATGATTGATAGTTGAGGTTC+TGG 0.346250 4_3:-15828019 Msa0632180:three_prime_UTR
CAGAATTGGGTGAAAGTTAC+AGG 0.346425 4_3:-15830663 Msa0632180:CDS
TTCCATATTTCTACATCTTC+GGG 0.348032 4_3:+15829580 None:intergenic
GACTGAGCAAATCACCTTAC+TGG 0.348700 4_3:-15829104 Msa0632180:CDS
CTAATGAGCTACTCCCTTCT+GGG 0.351886 4_3:-15831134 Msa0632180:CDS
GATTCAAACGATAATAAATC+TGG 0.353226 4_3:-15831303 Msa0632180:CDS
CTCTATGCTTGGTTGGGCTA+TGG 0.353786 4_3:-15831794 Msa0632180:CDS
TCGGGCAGCTTCTGATAAAT+AGG 0.357067 4_3:+15829598 None:intergenic
GACCTGGTGGTTTCTTTGTA+TGG 0.360085 4_3:-15829630 Msa0632180:CDS
AGTCTTTCTGGCCACTCCCC+TGG 0.363157 4_3:+15829123 None:intergenic
CTGTAGTTGCCGAGGTTGAT+AGG 0.364325 4_3:-15828506 Msa0632180:CDS
CCACGTTCTGTCGAACTAAC+TGG 0.372630 4_3:+15829156 None:intergenic
ATTTATGAACGTGGTCTGTT+TGG 0.379065 4_3:-15828745 Msa0632180:CDS
GATGACATCGTCTGTAGTTC+CGG 0.379624 4_3:-15831769 Msa0632180:CDS
AATGAAACTACAACTCAAAC+TGG 0.386627 4_3:-15831093 Msa0632180:CDS
ATTGGGCGTTTATATCCTTC+AGG 0.393045 4_3:+15830844 None:intergenic
CCAGGTTTGCAGCAGCTTTG+AGG 0.393982 4_3:-15828828 Msa0632180:intron
TGATCAGCAGTAAAATCTTC+AGG 0.398020 4_3:+15829042 None:intergenic
GATGAGAGCAATAACAAATC+TGG 0.398080 4_3:-15831405 Msa0632180:CDS
GATGAGAGCAATAACAAATC+TGG 0.398080 4_3:-15831432 Msa0632180:CDS
AGCAATCTACCGGGTTCAAT+TGG 0.400598 4_3:-15831011 Msa0632180:CDS
GATGAGAGCAATAACAAATC+TGG 0.403002 4_3:-15831459 Msa0632180:CDS
TAAAATCACCTAACTCTTGT+TGG 0.404507 4_3:+15828239 None:intergenic
GTAACATGGTGCCGTAGTTA+AGG 0.404794 4_3:-15828079 Msa0632180:three_prime_UTR
CAGGTTTGCAGCAGCTTTGA+GGG 0.405138 4_3:-15828827 Msa0632180:CDS
GGATGCGGCGTTGCCAGCTT+TGG 0.406344 4_3:-15830083 Msa0632180:CDS
AGATGCAAGTGAAAATAAAA+AGG 0.406679 4_3:-15831277 Msa0632180:CDS
TGGTTATCAAATTCTGAAGT+TGG 0.407557 4_3:-15829084 Msa0632180:CDS
CATGTGGCGGCCTACAGAAT+TGG 0.409128 4_3:-15828340 Msa0632180:CDS
CACTAAGCTTGCTGAATACA+AGG 0.413110 4_3:-15830691 Msa0632180:CDS
TGCCCGAAGATGTAGAAATA+TGG 0.415143 4_3:-15829582 Msa0632180:CDS
AAATATATTTACCTGTTGTA+TGG 0.415427 4_3:+15830575 None:intergenic
TCTTCAGGAGACTTATCTTC+AGG 0.416574 4_3:+15831534 None:intergenic
TATGTCATCTTGGTATCTTC+AGG 0.418811 4_3:+15831519 None:intergenic
AGGCAGGTAGGAGGATCTTC+AGG 0.419164 4_3:+15830877 None:intergenic
TTGGGTAATGAATGTCGTTC+CGG 0.420730 4_3:-15828794 Msa0632180:CDS
AAGCGCACCATGTTTGAATT+GGG 0.421782 4_3:+15830611 None:intergenic
TCAAGGCATGGAATGTAGTC+AGG 0.422263 4_3:+15830964 None:intergenic
CCCTGTTATGCCCGGAAAGC+AGG 0.423452 4_3:-15831577 Msa0632180:CDS
TTTGTTGCTCTATGCTTGGT+TGG 0.424129 4_3:-15831801 Msa0632180:CDS
AGACACTGCTGAGACCATTA+AGG 0.424525 4_3:-15828451 Msa0632180:CDS
GTCTGTACCTGATATTGCCT+GGG 0.424607 4_3:-15830135 Msa0632180:CDS
CTTAGCATTGTTATCCTCCT+TGG 0.425739 4_3:+15831614 None:intergenic
TCCTCCTTGGTAGCTTCCTC+GGG 0.425882 4_3:+15831627 None:intergenic
GGTCACAATGGCCAGGGGAG+TGG 0.427651 4_3:-15829134 Msa0632180:CDS
TTATATTGATCACCACTGTA+TGG 0.429815 4_3:-15828120 Msa0632180:three_prime_UTR
ATACTCTACTGTCTCGAATT+CGG 0.430578 4_3:+15828288 None:intergenic
TTGTTGCTCTATGCTTGGTT+GGG 0.432621 4_3:-15831800 Msa0632180:CDS
GGAATGGGGCAATGGGTTAA+GGG 0.433944 4_3:+15832829 None:intergenic
TAGACCTTTCATCGGACTCT+TGG 0.434605 4_3:+15831196 None:intergenic
GGTACAATTTGCACTTGAAA+GGG 0.436429 4_3:-15829994 Msa0632180:CDS
GAATGTGATGGGAAAGGAAT+GGG 0.439633 4_3:+15832814 None:intergenic
TCAGAAGTTTGAAGATAAGA+AGG 0.440496 4_3:-15831658 Msa0632180:CDS
AGTCTGTACCTGATATTGCC+TGG 0.440752 4_3:-15830136 Msa0632180:CDS
ATGGGAAAGGAATGGGGCAA+TGG 0.440864 4_3:+15832821 None:intergenic
ACAGAGCGAGGTGAAGAATC+AGG 0.442429 4_3:-15831706 Msa0632180:CDS
GAGAAATGAAATCTTGAATT+GGG 0.443254 4_3:+15832692 None:intergenic
TTGGTGGGGTAAAGTTGATA+GGG 0.443355 4_3:+15832758 None:intergenic
TGGGAAAGGAATGGGGCAAT+GGG 0.443469 4_3:+15832822 None:intergenic
ATGAGATGCCAACAAGAGTT+AGG 0.444426 4_3:-15828247 Msa0632180:three_prime_UTR
ATGGCATCAAATACTCTAGC+AGG 0.448584 4_3:+15829924 None:intergenic
AAAGAGAAAGCCACCAAAGC+TGG 0.449809 4_3:+15830070 None:intergenic
GGGCAATGGGTTAAGGGAAA+AGG 0.450141 4_3:+15832835 None:intergenic
TGTGTTTGTTGCTCTATGCT+TGG 0.454286 4_3:-15831805 Msa0632180:CDS
AGATAGTAAGACAGAAGAAA+AGG 0.454824 4_3:-15831235 Msa0632180:CDS
AGGGATAAACTTAATAAAGT+TGG 0.455976 4_3:-15829420 Msa0632180:CDS
TCATAGTCTTGACATATAGA+AGG 0.456886 4_3:+15829336 None:intergenic
TAAATAATTGGAAGTGTGTC+CGG 0.459194 4_3:+15828763 None:intergenic
TCCATGCCTTGACAACTTGA+AGG 0.459542 4_3:-15830953 Msa0632180:CDS
CGGAAAGCAGGAAGAGAAAT+CGG 0.459697 4_3:-15831565 Msa0632180:CDS
TCATAACACTCATTAGAAGT+TGG 0.460853 4_3:+15829378 None:intergenic
TGGATCAGTATATGTCATCT+TGG 0.462212 4_3:+15831509 None:intergenic
TGTAGGTGGCAAACTTCTCT+TGG 0.463244 4_3:-15829671 Msa0632180:intron
TCCTGCTATATCTGCTGTGA+TGG 0.463748 4_3:-15829967 Msa0632180:CDS
ATACAAGGGGCACCAGAATT+GGG 0.464985 4_3:-15830676 Msa0632180:CDS
TTTCTCGCTCTCATCAGAAT+CGG 0.465423 4_3:+15831332 None:intergenic
TGCGGCGTTGCCAGCTTTGG+TGG 0.467886 4_3:-15830080 Msa0632180:CDS
CTTCTGAGGATTGCTATTAG+TGG 0.470869 4_3:+15831674 None:intergenic
TGTCCAAGTCTTATCTAAAT+GGG 0.471066 4_3:-15828999 Msa0632180:CDS
AGGTACAATTTGCACTTGAA+AGG 0.472614 4_3:-15829995 Msa0632180:CDS
TTACATTGACACCATACAAC+AGG 0.472893 4_3:-15830586 Msa0632180:intron
TGTTTGGCATATATCATGAT+TGG 0.477645 4_3:-15828729 Msa0632180:CDS
CTCTAACAAAAGCAATGTGT+TGG 0.477646 4_3:-15829461 Msa0632180:CDS
TTGACAACTTGAAGGCGATT+CGG 0.478459 4_3:-15830945 Msa0632180:CDS
GCAGTAAAATCTTCAGGAGC+AGG 0.479751 4_3:+15829048 None:intergenic
TCAGAATTTGATAACCAGTA+AGG 0.480321 4_3:+15829090 None:intergenic
GGGAAGTGGTGTCTATCAGC+AGG 0.480892 4_3:-15829440 Msa0632180:CDS
CATTAAGGAGCTGGAGAGCT+TGG 0.481031 4_3:-15828436 Msa0632180:CDS
CACACGTGTTTGTTTGCCCC+AGG 0.482612 4_3:+15830118 None:intergenic
ATTGAACCCGGTAGATTGCT+TGG 0.487643 4_3:+15831014 None:intergenic
AACACTATGAACACAGAGAA+AGG 0.487854 4_3:-15830906 Msa0632180:CDS
GAACAAGAAGACATCTGATT+CGG 0.493963 4_3:-15831481 Msa0632180:CDS
GAGACAGTAGAGTATGCTAT+TGG 0.494819 4_3:-15828318 Msa0632180:CDS
CTTCTCACTCTCATCAGAAT+CGG 0.495820 4_3:+15831359 None:intergenic
AAATCCTCCAAGCAATCTAC+CGG 0.500678 4_3:-15831021 Msa0632180:CDS
CCGAGGTTGATAGGATTCTC+AGG 0.501423 4_3:-15828497 Msa0632180:CDS
ATCAAATACTCTAGCAGGGA+AGG 0.501685 4_3:+15829929 None:intergenic
TCTACAGCGTGCACAATGAA+TGG 0.504753 4_3:+15829905 None:intergenic
AGAGTTCCGTGGCATATAGA+AGG 0.507563 4_3:-15829885 Msa0632180:intron
TTGAATTGGGTTCCACCACC+AGG 0.509928 4_3:+15830624 None:intergenic
TGCTGAGACCATTAAGGAGC+TGG 0.513322 4_3:-15828445 Msa0632180:CDS
GAACGTGGGTCACAATGGCC+AGG 0.519506 4_3:-15829141 Msa0632180:CDS
TCTAACAAAAGCAATGTGTT+GGG 0.523325 4_3:-15829460 Msa0632180:CDS
ATCTGCATGAAGTAGATCAT+AGG 0.524703 4_3:+15828678 None:intergenic
AAGAAACAGAGACCAAAGAA+AGG 0.526718 4_3:+15832886 None:intergenic
CCTGCTTTCCGGGCATAACA+GGG 0.529227 4_3:+15831577 None:intergenic
TGTCGTTCCGGTAGACTCAC+CGG 0.531879 4_3:-15828782 Msa0632180:CDS
TTCTTATCTTCAAACTTCTG+AGG 0.533134 4_3:+15831660 None:intergenic
AAAAGATGAACATGAAGCTC+AGG 0.533172 4_3:-15830015 Msa0632180:CDS
GCCTTCAAGTTGTCAAGGCA+TGG 0.539567 4_3:+15830952 None:intergenic
TTCAGGAAGAGCGACAAGGC+AGG 0.541534 4_3:+15830861 None:intergenic
AAGTCTTATCTAAATGGGAT+TGG 0.544074 4_3:-15828994 Msa0632180:CDS
TCTTGAATTGGGATGGTGAA+AGG 0.545219 4_3:+15832703 None:intergenic
TGCCTTGTCGCTCTTCCTGA+AGG 0.545666 4_3:-15830859 Msa0632180:CDS
GATATAAACGCCCAATCGAA+TGG 0.547059 4_3:-15830837 Msa0632180:CDS
AAAAGCAATGTGTTGGGAAG+TGG 0.548445 4_3:-15829454 Msa0632180:CDS
AATCCCATTTAGATAAGACT+TGG 0.550835 4_3:+15828996 None:intergenic
TTTCATTCAGAAGCTCTGAC+TGG 0.555443 4_3:+15831109 None:intergenic
GACCCCGTCTACAGAAATGA+AGG 0.557235 4_3:-15829484 Msa0632180:intron
CTTCTCATTAGACCTTTCAT+CGG 0.557553 4_3:+15831188 None:intergenic
TTGTGCATGCAACTTTGCAA+TGG 0.557899 4_3:+15829183 None:intergenic
GCATGGAATGTAGTCAGGGC+CGG 0.560863 4_3:+15830969 None:intergenic
GTCCATGACATTGCGCACAT+TGG 0.560985 4_3:+15828960 None:intergenic
TATTGAAAATTGAATGTGAT+GGG 0.561369 4_3:+15832803 None:intergenic
GAAAACAACCCTGTTATGCC+CGG 0.562365 4_3:-15831585 Msa0632180:CDS
TAATGGTCTCAGCAGTGTCT+CGG 0.565162 4_3:+15828454 None:intergenic
TTCCACCACCAGGAAAAGTA+AGG 0.565768 4_3:+15830634 None:intergenic
CCAGTTAGTTCGACAGAACG+TGG 0.567966 4_3:-15829156 Msa0632180:CDS
GATAGGATTCTCAGGCCTGA+GGG 0.568699 4_3:-15828489 Msa0632180:CDS
CAGAAGTTTGAAGATAAGAA+GGG 0.569315 4_3:-15831657 Msa0632180:CDS
CCTGCTATATCTGCTGTGAT+GGG 0.569858 4_3:-15829966 Msa0632180:CDS
CTTCCAATTATTTATGAACG+TGG 0.571347 4_3:-15828754 Msa0632180:CDS
AACGTGGGTCACAATGGCCA+GGG 0.572813 4_3:-15829140 Msa0632180:CDS
CCCATCACAGCAGATATAGC+AGG 0.575073 4_3:+15829966 None:intergenic
GTCCAATGTGCGCAATGTCA+TGG 0.576181 4_3:-15828962 Msa0632180:CDS
TGAATGTGATGGGAAAGGAA+TGG 0.576553 4_3:+15832813 None:intergenic
GAACCCGGTAGATTGCTTGG+AGG 0.577245 4_3:+15831017 None:intergenic
TTAAGGGAAAAGGATGAAGA+AGG 0.578727 4_3:+15832845 None:intergenic
ACTTACACTAAAGATTTGCA+GGG 0.585635 4_3:-15828384 Msa0632180:CDS
ATGAAGTAGATCATAGGACC+TGG 0.586094 4_3:+15828684 None:intergenic
TAATGAGCTACTCCCTTCTG+GGG 0.587270 4_3:-15831133 Msa0632180:CDS
CCATGTTGTCACTTATCAAA+AGG 0.588599 4_3:+15831898 None:intergenic
AGGATGAAGAAGGATAGAGT+TGG 0.589002 4_3:+15832855 None:intergenic
TGATCAGAATTCCTTAACTA+CGG 0.590344 4_3:+15828068 None:intergenic
AATGTGATGGGAAAGGAATG+GGG 0.590504 4_3:+15832815 None:intergenic
AATGAAATCTTGAATTGGGA+TGG 0.593099 4_3:+15832696 None:intergenic
CAATTCTGTAGGCCGCCACA+TGG 0.593696 4_3:+15828341 None:intergenic
CTTTGGATGATTGATAGTTG+AGG 0.594228 4_3:-15828025 Msa0632180:three_prime_UTR
CTTGGTGACATCTATGCAGT+GGG 0.597887 4_3:-15828418 Msa0632180:CDS
GAATCGCCTTCAAGTTGTCA+AGG 0.598521 4_3:+15830947 None:intergenic
ATGATGATCCTAATGCCGCC+TGG 0.598814 4_3:-15829317 Msa0632180:intron
AAAATTGAATGTGATGGGAA+AGG 0.600447 4_3:+15832808 None:intergenic
GGAGTAGCTCATTAGAACCC+TGG 0.600496 4_3:+15831142 None:intergenic
AGAGCGACAAGGCAGGTAGG+AGG 0.606982 4_3:+15830868 None:intergenic
TTACTGCTGATCATGAACAC+TGG 0.609094 4_3:-15829032 Msa0632180:CDS
TAACAAATCTGGTTCTGATG+AGG 0.609989 4_3:-15831394 Msa0632180:CDS
CGGACAATAAGCTTTCCCTC+AGG 0.610538 4_3:+15828474 None:intergenic
AGTGTGTCCGGTGAGTCTAC+CGG 0.613797 4_3:+15828775 None:intergenic
AAGCTTAGTGTGTGGAACGT+TGG 0.614215 4_3:+15830704 None:intergenic
GGAAGAGCGACAAGGCAGGT+AGG 0.614855 4_3:+15830865 None:intergenic
TGTTGTCACTTATCAAAAGG+TGG 0.616743 4_3:+15831901 None:intergenic
AAACTCTGCAATGTCACTGC+CGG 0.617134 4_3:-15830988 Msa0632180:CDS
GAAATACCTTCTATATGCCA+CGG 0.618360 4_3:+15829879 None:intergenic
TCTACTGTCTCCAATTCTGT+AGG 0.618641 4_3:+15828330 None:intergenic
ACACGTGTGATATTGGATGT+TGG 0.619996 4_3:-15830104 Msa0632180:CDS
GCTTGGTGACATCTATGCAG+TGG 0.621238 4_3:-15828419 Msa0632180:CDS
GACATGAGATCAGTTTATGG+AGG 0.624346 4_3:-15828940 Msa0632180:CDS
ACTAAGCTTGCTGAATACAA+GGG 0.624777 4_3:-15830690 Msa0632180:CDS
TATTCAGCAAGCTTAGTGTG+TGG 0.626139 4_3:+15830696 None:intergenic
ATGGCCCAAAAGCAGAGAGA+AGG 0.626143 4_3:-15830818 Msa0632180:intron
AATCCGTGAAACACCATGTG+GGG 0.626610 4_3:+15832951 None:intergenic
GTTTGAAGCTGTAGTTGCCG+AGG 0.628136 4_3:-15828514 Msa0632180:CDS
TGATAGGATTCTCAGGCCTG+AGG 0.629871 4_3:-15828490 Msa0632180:CDS
GGTGACATCTATGCAGTGGG+AGG 0.630863 4_3:-15828415 Msa0632180:CDS
TCAAATACTCTAGCAGGGAA+GGG 0.631133 4_3:+15829930 None:intergenic
ATCCGTGAAACACCATGTGG+GGG 0.632591 4_3:+15832952 None:intergenic
GTACAATTTGCACTTGAAAG+GGG 0.633712 4_3:-15829993 Msa0632180:CDS
CCTGAGAATCCTATCAACCT+CGG 0.634465 4_3:+15828497 None:intergenic
CGACAGAACGTGGGTCACAA+TGG 0.634623 4_3:-15829146 Msa0632180:CDS
GTGATATTGGATGTTGGATG+CGG 0.635039 4_3:-15830098 Msa0632180:CDS
GACCATACAAAGAAACCACC+AGG 0.636775 4_3:+15829628 None:intergenic
TCTGCCCGAGGAAGCTACCA+AGG 0.636962 4_3:-15831631 Msa0632180:CDS
CTGCTGTGATGGGCACAAAG+AGG 0.637182 4_3:-15829956 Msa0632180:CDS
GCAGAGTTTCCAATTGAACC+CGG 0.637837 4_3:+15831002 None:intergenic
GAATCCGTGAAACACCATGT+GGG 0.638573 4_3:+15832950 None:intergenic
ACCGTTGAGCAGTAACTCGA+CGG 0.639254 4_3:+15831837 None:intergenic
ATATTGAAAATTGAATGTGA+TGG 0.640293 4_3:+15832802 None:intergenic
CAAGGCATGGAATGTAGTCA+GGG 0.640525 4_3:+15830965 None:intergenic
TGGCATCAAATACTCTAGCA+GGG 0.641803 4_3:+15829925 None:intergenic
TAAATGGGATTGGCATTCAG+TGG 0.645780 4_3:-15828984 Msa0632180:CDS
GTAACCAAGAGTCCGATGAA+AGG 0.646102 4_3:-15831200 Msa0632180:CDS
AATCATTTAGCACATATCCC+AGG 0.649524 4_3:-15828702 Msa0632180:CDS
ACATGAGATCAGTTTATGGA+GGG 0.652022 4_3:-15828939 Msa0632180:intron
TGAAGTAGATCATAGGACCT+GGG 0.654597 4_3:+15828685 None:intergenic
CTAAGCTTGCTGAATACAAG+GGG 0.655529 4_3:-15830689 Msa0632180:CDS
ATCCTTCAGGAAGAGCGACA+AGG 0.657623 4_3:+15830857 None:intergenic
TCCGTCGAGTTACTGCTCAA+CGG 0.657836 4_3:-15831838 Msa0632180:CDS
ACGTGGGTCACAATGGCCAG+GGG 0.659025 4_3:-15829139 Msa0632180:CDS
AGAAACAAGCTTCCATACAG+TGG 0.659895 4_3:+15828108 None:intergenic
GAATAGTTATCTCTGCATTG+TGG 0.661597 4_3:+15832628 None:intergenic
AATCCTCCAAGCAATCTACC+GGG 0.661733 4_3:-15831020 Msa0632180:CDS
TGAGGTGAAAGGACAGAGCG+AGG 0.662207 4_3:-15831718 Msa0632180:CDS
AATGAGCTACTCCCTTCTGG+GGG 0.663250 4_3:-15831132 Msa0632180:CDS
TTGAATAGAGTATTGCGACC+TGG 0.667810 4_3:-15829646 Msa0632180:CDS
GTGTCCAGAAGTCCATGTGG+CGG 0.672312 4_3:-15828353 Msa0632180:CDS
GGAAGTGGTGTCTATCAGCA+GGG 0.674006 4_3:-15829439 Msa0632180:CDS
TCCGTGAAACACCATGTGGG+GGG 0.674430 4_3:+15832953 None:intergenic
TGATACATAACGAATAATGG+AGG 0.676175 4_3:+15828185 None:intergenic
GTGCACGCTGTAGAGTTCCG+TGG 0.676281 4_3:-15829896 Msa0632180:CDS
AATAGAGTATTGCGACCTGG+TGG 0.685656 4_3:-15829643 Msa0632180:CDS
GAAGATGTAGAAATATGGAA+CGG 0.686612 4_3:-15829577 Msa0632180:intron
GAAGAAAAGGCAGATCAAAG+TGG 0.688007 4_3:-15831222 Msa0632180:CDS
TCTGTACCTGATATTGCCTG+GGG 0.689283 4_3:-15830134 Msa0632180:CDS
CAGTTAGTTCGACAGAACGT+GGG 0.696778 4_3:-15829155 Msa0632180:CDS
GGTGTTTCACGGATTCTATG+CGG 0.701593 4_3:-15832943 Msa0632180:five_prime_UTR
CAGAGACTAGGAGAGAGTGA+CGG 0.708417 4_3:+15832920 None:intergenic
TAAGAAGGGAGATCTGCCCG+AGG 0.713293 4_3:-15831643 Msa0632180:CDS
GGTGGAACCCAATTCAAACA+TGG 0.718496 4_3:-15830618 Msa0632180:CDS
TTGTGGTGTTGTAACGCATG+AGG 0.719024 4_3:+15832645 None:intergenic
AGAATCCGTGAAACACCATG+TGG 0.722481 4_3:+15832949 None:intergenic
GCCCGAGGAAGCTACCAAGG+AGG 0.738197 4_3:-15831628 Msa0632180:CDS
TATGTGTCCAGAAGTCCATG+TGG 0.749324 4_3:-15828356 Msa0632180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTAATTAAAATTCAATTT+TGG - chr4_3:15830512-15830531 Msa0632180:intron 10.0%
!! TTAAAAATAAAAACAGAAAA+AGG - chr4_3:15831629-15831648 Msa0632180:CDS 10.0%
!!! AATCACAAATTTTATATGAT+TGG - chr4_3:15828844-15828863 Msa0632180:intron 15.0%
!! ATGTATTATGGATTTAATTA+TGG + chr4_3:15830380-15830399 None:intergenic 15.0%
!!! ATTGAATTTTAATTAGAACT+AGG + chr4_3:15830510-15830529 None:intergenic 15.0%
!! TATTGAAAATTGAATGTGAT+GGG + chr4_3:15828086-15828105 None:intergenic 20.0%
!! ATATTGAAAATTGAATGTGA+TGG + chr4_3:15828087-15828106 None:intergenic 20.0%
!!! CTTTAATTTTCCTTAATTCA+TGG + chr4_3:15828795-15828814 None:intergenic 20.0%
!! CAAAAACCTAGTTATATATA+TGG - chr4_3:15828819-15828838 Msa0632180:CDS 20.0%
!! AAATATATTTACCTGTTGTA+TGG + chr4_3:15830314-15830333 None:intergenic 20.0%
!! TTGGAAGATATAATTCAAAA+TGG - chr4_3:15830531-15830550 Msa0632180:intron 20.0%
!! CAAAATGGAAACATAATATT+TGG - chr4_3:15830546-15830565 Msa0632180:intron 20.0%
!! AAATCTTCAAACAAGTAATT+AGG + chr4_3:15830573-15830592 None:intergenic 20.0%
!!! TACTTGTTTGAAGATTTTTA+TGG - chr4_3:15830576-15830595 Msa0632180:intron 20.0%
!!! GAATATTTTTTCCTAAACAT+TGG + chr4_3:15830602-15830621 None:intergenic 20.0%
!! TATAATCCATGTAAATAAAC+TGG - chr4_3:15831157-15831176 Msa0632180:CDS 20.0%
!! AATTAAATTCAGAGTAACAT+TGG + chr4_3:15831992-15832011 None:intergenic 20.0%
!! TAATGATACATAACGAATAA+TGG + chr4_3:15832707-15832726 None:intergenic 20.0%
!!! TTGTTTCTTTTTTTGTAACA+TGG - chr4_3:15832793-15832812 Msa0632180:five_prime_UTR 20.0%
!!! ACAAAACTAATACCAAATTT+TGG + chr4_3:15832913-15832932 None:intergenic 20.0%
!! TATACGAAAGATGATGATTT+TGG + chr4_3:15828150-15828169 None:intergenic 25.0%
! GAGAAATGAAATCTTGAATT+GGG + chr4_3:15828197-15828216 None:intergenic 25.0%
! TGAGAAATGAAATCTTGAAT+TGG + chr4_3:15828198-15828217 None:intergenic 25.0%
! GGAAAAGTGAAATGAATAAA+AGG + chr4_3:15828388-15828407 None:intergenic 25.0%
! TACATGACATATATCACTAA+TGG + chr4_3:15828604-15828623 None:intergenic 25.0%
! TCTTGAATGATATCATGATT+TGG - chr4_3:15828764-15828783 Msa0632180:CDS 25.0%
! GATTCACCATATATATAACT+AGG + chr4_3:15828828-15828847 None:intergenic 25.0%
! GATTCAAACGATAATAAATC+TGG - chr4_3:15829583-15829602 Msa0632180:CDS 25.0%
! AGATGCAAGTGAAAATAAAA+AGG - chr4_3:15829609-15829628 Msa0632180:CDS 25.0%
!!! CATAGTGTTTAGTAGTTTTA+AGG + chr4_3:15829969-15829988 None:intergenic 25.0%
!! GCTTTGTCAATTTTCATTAT+TGG - chr4_3:15830108-15830127 Msa0632180:CDS 25.0%
! AAAATGTTCTCTTTCAGATA+TGG - chr4_3:15830155-15830174 Msa0632180:intron 25.0%
! AACATTAGAACAAACACATA+CGG + chr4_3:15830357-15830376 None:intergenic 25.0%
! CATCTAGTTATACAATCTAA+GGG - chr4_3:15830622-15830641 Msa0632180:CDS 25.0%
!! AATGTGGTTAGATGAAATTT+TGG - chr4_3:15831062-15831081 Msa0632180:CDS 25.0%
!! ACAAGCTTGAAATTTTTATG+CGG - chr4_3:15831089-15831108 Msa0632180:CDS 25.0%
! TAAAAGCCAGTTTATTTACA+TGG + chr4_3:15831166-15831185 None:intergenic 25.0%
!!! TAAACTGGCTTTTATGATTT+TGG - chr4_3:15831172-15831191 Msa0632180:CDS 25.0%
! AGGGATAAACTTAATAAAGT+TGG - chr4_3:15831466-15831485 Msa0632180:CDS 25.0%
! TTTGAGGGATTTGAAAATTT+GGG - chr4_3:15832074-15832093 Msa0632180:intron 25.0%
!! TGTTTTCAAAGCTTAAGAAA+AGG - chr4_3:15832235-15832254 Msa0632180:intron 25.0%
! TACATTTACCAACAAAAACT+TGG - chr4_3:15832282-15832301 Msa0632180:intron 25.0%
! TATTCTTGACTACCAAAATT+TGG - chr4_3:15832898-15832917 Msa0632180:five_prime_UTR 25.0%
!!! GTTTTTTTCGTTCCTTTCTT+TGG - chr4_3:15827988-15828007 Msa0632180:three_prime_UTR 30.0%
! AAAATTGAATGTGATGGGAA+AGG + chr4_3:15828081-15828100 None:intergenic 30.0%
AATGAAATCTTGAATTGGGA+TGG + chr4_3:15828193-15828212 None:intergenic 30.0%
AGATCTGCTTCTTTCATAAT+AGG - chr4_3:15828287-15828306 Msa0632180:exon 30.0%
TAGATGCATAGAATAAAACG+TGG + chr4_3:15828414-15828433 None:intergenic 30.0%
TTAAGCGATCAATCAAGAAA+CGG + chr4_3:15828442-15828461 None:intergenic 30.0%
TAGCAGATCTAATAGATTGA+TGG + chr4_3:15828557-15828576 None:intergenic 30.0%
! GACATATATCACTAATGGAT+TGG + chr4_3:15828599-15828618 None:intergenic 30.0%
AGATGAGTCGAATAAAAATG+AGG - chr4_3:15829150-15829169 Msa0632180:CDS 30.0%
TCGAATAAAAATGAGGTGAA+AGG - chr4_3:15829157-15829176 Msa0632180:CDS 30.0%
TTCTTATCTTCAAACTTCTG+AGG + chr4_3:15829229-15829248 None:intergenic 30.0%
TCAGAAGTTTGAAGATAAGA+AGG - chr4_3:15829228-15829247 Msa0632180:intron 30.0%
CAGAAGTTTGAAGATAAGAA+GGG - chr4_3:15829229-15829248 Msa0632180:intron 30.0%
AGATAGTAAGACAGAAGAAA+AGG - chr4_3:15829651-15829670 Msa0632180:CDS 30.0%
AGATGAAAATACCAAAAACC+AGG - chr4_3:15829726-15829745 Msa0632180:intron 30.0%
GATGAAAATACCAAAAACCA+GGG - chr4_3:15829727-15829746 Msa0632180:intron 30.0%
AATGAAACTACAACTCAAAC+TGG - chr4_3:15829793-15829812 Msa0632180:intron 30.0%
! AGAGAAGGTACAAATAAATC+AGG - chr4_3:15830083-15830102 Msa0632180:CDS 30.0%
AACTGACAGTACATGTATTA+TGG + chr4_3:15830392-15830411 None:intergenic 30.0%
! GATTTTTATGGCCAATGTTT+AGG - chr4_3:15830588-15830607 Msa0632180:CDS 30.0%
CCTTAGATTGTATAACTAGA+TGG + chr4_3:15830624-15830643 None:intergenic 30.0%
CCATCTAGTTATACAATCTA+AGG - chr4_3:15830621-15830640 Msa0632180:CDS 30.0%
! TTCCATATTTCTACATCTTC+GGG + chr4_3:15831309-15831328 None:intergenic 30.0%
! GTTCCATATTTCTACATCTT+CGG + chr4_3:15831310-15831329 None:intergenic 30.0%
GAAGATGTAGAAATATGGAA+CGG - chr4_3:15831309-15831328 Msa0632180:CDS 30.0%
!! ACTATTAAGCGTTTCAAGTT+TGG - chr4_3:15831358-15831377 Msa0632180:CDS 30.0%
TCTAACAAAAGCAATGTGTT+GGG - chr4_3:15831426-15831445 Msa0632180:CDS 30.0%
TCATAACACTCATTAGAAGT+TGG + chr4_3:15831511-15831530 None:intergenic 30.0%
! TCATAGTCTTGACATATAGA+AGG + chr4_3:15831553-15831572 None:intergenic 30.0%
TCAGTAAAGGAAAAAATACC+AGG + chr4_3:15831590-15831609 None:intergenic 30.0%
!!! AAAACAGAAAAAGGCGTTTT+TGG - chr4_3:15831638-15831657 Msa0632180:CDS 30.0%
! TCAGAATTTGATAACCAGTA+AGG + chr4_3:15831799-15831818 None:intergenic 30.0%
!! TGGTTATCAAATTCTGAAGT+TGG - chr4_3:15831802-15831821 Msa0632180:CDS 30.0%
!! AATTCTGAAGTTGGAGTTTA+TGG - chr4_3:15831811-15831830 Msa0632180:CDS 30.0%
! TGTCCAAGTCTTATCTAAAT+GGG - chr4_3:15831887-15831906 Msa0632180:exon 30.0%
AATCCCATTTAGATAAGACT+TGG + chr4_3:15831893-15831912 None:intergenic 30.0%
! AAGTCTTATCTAAATGGGAT+TGG - chr4_3:15831892-15831911 Msa0632180:exon 30.0%
! CTTTGAGGGATTTGAAAATT+TGG - chr4_3:15832073-15832092 Msa0632180:intron 30.0%
! TAAATAATTGGAAGTGTGTC+CGG + chr4_3:15832126-15832145 None:intergenic 30.0%
CTTCCAATTATTTATGAACG+TGG - chr4_3:15832132-15832151 Msa0632180:intron 30.0%
AGACCACGTTCATAAATAAT+TGG + chr4_3:15832138-15832157 None:intergenic 30.0%
TGTTTGGCATATATCATGAT+TGG - chr4_3:15832157-15832176 Msa0632180:intron 30.0%
! CTGAAAAACCAAGTTTTTGT+TGG + chr4_3:15832293-15832312 None:intergenic 30.0%
!! CAAAAACTTGGTTTTTCAGA+AGG - chr4_3:15832294-15832313 Msa0632180:intron 30.0%
!!! TCATTTTGAAACGTTGTTTG+TGG - chr4_3:15832338-15832357 Msa0632180:intron 30.0%
ACTTACACTAAAGATTTGCA+GGG - chr4_3:15832502-15832521 Msa0632180:intron 30.0%
TAAAATCACCTAACTCTTGT+TGG + chr4_3:15832650-15832669 None:intergenic 30.0%
! AACAAGAGTTAGGTGATTTT+AGG - chr4_3:15832649-15832668 Msa0632180:five_prime_UTR 30.0%
! ACAAGAGTTAGGTGATTTTA+GGG - chr4_3:15832650-15832669 Msa0632180:five_prime_UTR 30.0%
TGATACATAACGAATAATGG+AGG + chr4_3:15832704-15832723 None:intergenic 30.0%
TTATATTGATCACCACTGTA+TGG - chr4_3:15832766-15832785 Msa0632180:five_prime_UTR 30.0%
TGATCAGAATTCCTTAACTA+CGG + chr4_3:15832821-15832840 None:intergenic 30.0%
! TCACATTCTTGGAATTTTAG+AGG - chr4_3:15832838-15832857 Msa0632180:five_prime_UTR 30.0%
GAACGAAAAAAACAGAGACT+AGG + chr4_3:15827981-15828000 None:intergenic 35.0%
AAGAAACAGAGACCAAAGAA+AGG + chr4_3:15828003-15828022 None:intergenic 35.0%
TTAAGGGAAAAGGATGAAGA+AGG + chr4_3:15828044-15828063 None:intergenic 35.0%
!! GAAAGATGATGATTTTGGTG+GGG + chr4_3:15828145-15828164 None:intergenic 35.0%
!! CGAAAGATGATGATTTTGGT+GGG + chr4_3:15828146-15828165 None:intergenic 35.0%
! ACGAAAGATGATGATTTTGG+TGG + chr4_3:15828147-15828166 None:intergenic 35.0%
GAACGAACGAAGAAAGAAAA+AGG + chr4_3:15828222-15828241 None:intergenic 35.0%
GAATAGTTATCTCTGCATTG+TGG + chr4_3:15828261-15828280 None:intergenic 35.0%
AGAAGTGGATAAATGTGTGA+AGG + chr4_3:15828349-15828368 None:intergenic 35.0%
GCATAGAATAAAACGTGGAA+AGG + chr4_3:15828409-15828428 None:intergenic 35.0%
!! ATGGATTGGACGCATTATTA+AGG + chr4_3:15828585-15828604 None:intergenic 35.0%
!! ACTTTTGATTGAAGCGTGTT+CGG - chr4_3:15828632-15828651 Msa0632180:intron 35.0%
TTTGGCAATGCCATGAATTA+AGG - chr4_3:15828782-15828801 Msa0632180:CDS 35.0%
GCAGAATACTGAAGAATCTT+TGG + chr4_3:15828887-15828906 None:intergenic 35.0%
! GCATTCGATTTTCAACATTG+TGG - chr4_3:15828905-15828924 Msa0632180:intron 35.0%
! TCGATTTTCAACATTGTGGA+TGG - chr4_3:15828909-15828928 Msa0632180:intron 35.0%
! TGTTGTCACTTATCAAAAGG+TGG + chr4_3:15828988-15829007 None:intergenic 35.0%
! CCATGTTGTCACTTATCAAA+AGG + chr4_3:15828991-15829010 None:intergenic 35.0%
! CCTTTTGATAAGTGACAACA+TGG - chr4_3:15828988-15829007 Msa0632180:CDS 35.0%
TATGTCATCTTGGTATCTTC+AGG + chr4_3:15829370-15829389 None:intergenic 35.0%
TGGATCAGTATATGTCATCT+TGG + chr4_3:15829380-15829399 None:intergenic 35.0%
GATGTCTTCTTGTTCTGATT+TGG + chr4_3:15829400-15829419 None:intergenic 35.0%
GAACAAGAAGACATCTGATT+CGG - chr4_3:15829405-15829424 Msa0632180:CDS 35.0%
GATGAGAGCAATAACAAATC+TGG - chr4_3:15829427-15829446 Msa0632180:CDS 35.0%
GATGAGAGCAATAACAAATC+TGG - chr4_3:15829427-15829446 Msa0632180:CDS 35.0%
GATGAGAGCAATAACAAATC+TGG - chr4_3:15829427-15829446 Msa0632180:CDS 35.0%
!! TAACAAATCTGGTTCTGATG+AGG - chr4_3:15829438-15829457 Msa0632180:CDS 35.0%
TGATGAGAGCGAGAAAAAAT+TGG - chr4_3:15829561-15829580 Msa0632180:intron 35.0%
CTTCTCATTAGACCTTTCAT+CGG + chr4_3:15829701-15829720 None:intergenic 35.0%
!!! AACTGGATCTTTTTCAACTC+AGG - chr4_3:15829810-15829829 Msa0632180:intron 35.0%
AACACTATGAACACAGAGAA+AGG - chr4_3:15829980-15829999 Msa0632180:CDS 35.0%
!! ACTAAGCTTGCTGAATACAA+GGG - chr4_3:15830196-15830215 Msa0632180:intron 35.0%
TTACATTGACACCATACAAC+AGG - chr4_3:15830300-15830319 Msa0632180:intron 35.0%
! AGATGAGAAATTTGCTCTAG+TGG + chr4_3:15830444-15830463 None:intergenic 35.0%
! GTTTTCATCCTAGAATTGCT+AGG - chr4_3:15830667-15830686 Msa0632180:CDS 35.0%
CAAACAAACACGTGTGATAT+TGG - chr4_3:15830775-15830794 Msa0632180:intron 35.0%
! TGAGCTTCATGTTCATCTTT+TGG + chr4_3:15830872-15830891 None:intergenic 35.0%
AAAAGATGAACATGAAGCTC+AGG - chr4_3:15830871-15830890 Msa0632180:CDS 35.0%
AGGTACAATTTGCACTTGAA+AGG - chr4_3:15830891-15830910 Msa0632180:CDS 35.0%
GGTACAATTTGCACTTGAAA+GGG - chr4_3:15830892-15830911 Msa0632180:CDS 35.0%
GTACAATTTGCACTTGAAAG+GGG - chr4_3:15830893-15830912 Msa0632180:CDS 35.0%
GAAATACCTTCTATATGCCA+CGG + chr4_3:15831010-15831029 None:intergenic 35.0%
CATTCACTGCTGTAAAAGTT+AGG + chr4_3:15831046-15831065 None:intergenic 35.0%
! AACTTTTACAGCAGTGAATG+TGG - chr4_3:15831046-15831065 Msa0632180:CDS 35.0%
TCTAAATGCCAAAATGATGC+TGG + chr4_3:15831132-15831151 None:intergenic 35.0%
TTCACTATTTGTGCACATGT+AGG - chr4_3:15831198-15831217 Msa0632180:CDS 35.0%
CTCTAACAAAAGCAATGTGT+TGG - chr4_3:15831425-15831444 Msa0632180:CDS 35.0%
ACATATAGAAGGCTCATTCT+TGG + chr4_3:15831542-15831561 None:intergenic 35.0%
GTAAAGGAAAAAATACCAGG+CGG + chr4_3:15831587-15831606 None:intergenic 35.0%
ACATTCTAATCGCTCAGTAA+AGG + chr4_3:15831603-15831622 None:intergenic 35.0%
TGATCAGCAGTAAAATCTTC+AGG + chr4_3:15831847-15831866 None:intergenic 35.0%
! GTGTCCAAGTCTTATCTAAA+TGG - chr4_3:15831886-15831905 Msa0632180:exon 35.0%
ATGGACATGAGATCAGTTTA+TGG - chr4_3:15831943-15831962 Msa0632180:intron 35.0%
ACATGAGATCAGTTTATGGA+GGG - chr4_3:15831947-15831966 Msa0632180:intron 35.0%
!!! GTTTGACACCTTCTGTTTTT+TGG - chr4_3:15832033-15832052 Msa0632180:intron 35.0%
ATTTATGAACGTGGTCTGTT+TGG - chr4_3:15832141-15832160 Msa0632180:intron 35.0%
AATCATTTAGCACATATCCC+AGG - chr4_3:15832184-15832203 Msa0632180:intron 35.0%
ATCTGCATGAAGTAGATCAT+AGG + chr4_3:15832211-15832230 None:intergenic 35.0%
GACTTACACTAAAGATTTGC+AGG - chr4_3:15832501-15832520 Msa0632180:intron 35.0%
ATACTCTACTGTCTCGAATT+CGG + chr4_3:15832601-15832620 None:intergenic 35.0%
AGGAATTCTGATCACATTCT+TGG - chr4_3:15832827-15832846 Msa0632180:five_prime_UTR 35.0%
!! TCTTGGAATTTTAGAGGCTT+TGG - chr4_3:15832844-15832863 Msa0632180:five_prime_UTR 35.0%
! CTTTGGATGATTGATAGTTG+AGG - chr4_3:15832861-15832880 Msa0632180:five_prime_UTR 35.0%
! ATGATTGATAGTTGAGGTTC+TGG - chr4_3:15832867-15832886 Msa0632180:five_prime_UTR 35.0%
AGGATGAAGAAGGATAGAGT+TGG + chr4_3:15828034-15828053 None:intergenic 40.0%
! AATGTGATGGGAAAGGAATG+GGG + chr4_3:15828074-15828093 None:intergenic 40.0%
! GAATGTGATGGGAAAGGAAT+GGG + chr4_3:15828075-15828094 None:intergenic 40.0%
! TGAATGTGATGGGAAAGGAA+TGG + chr4_3:15828076-15828095 None:intergenic 40.0%
!! TTGGTGGGGTAAAGTTGATA+GGG + chr4_3:15828131-15828150 None:intergenic 40.0%
! TTTGGTGGGGTAAAGTTGAT+AGG + chr4_3:15828132-15828151 None:intergenic 40.0%
TCTTGAATTGGGATGGTGAA+AGG + chr4_3:15828186-15828205 None:intergenic 40.0%
! CACGCTTCAATCAAAAGTGT+AGG + chr4_3:15828630-15828649 None:intergenic 40.0%
CTGTTCGGGAATACAAACAA+CGG + chr4_3:15828942-15828961 None:intergenic 40.0%
CAGATAGTTTAGACCTGTTC+GGG + chr4_3:15828956-15828975 None:intergenic 40.0%
GCAGATAGTTTAGACCTGTT+CGG + chr4_3:15828957-15828976 None:intergenic 40.0%
! TGTGTTTGTTGCTCTATGCT+TGG - chr4_3:15829081-15829100 Msa0632180:CDS 40.0%
TTTGTTGCTCTATGCTTGGT+TGG - chr4_3:15829085-15829104 Msa0632180:CDS 40.0%
TTGTTGCTCTATGCTTGGTT+GGG - chr4_3:15829086-15829105 Msa0632180:CDS 40.0%
! GACTCATCTACATTTTGCAC+CGG + chr4_3:15829139-15829158 None:intergenic 40.0%
! CTTCTGAGGATTGCTATTAG+TGG + chr4_3:15829215-15829234 None:intergenic 40.0%
CTTAGCATTGTTATCCTCCT+TGG + chr4_3:15829275-15829294 None:intergenic 40.0%
!! ATAACAGGGTTGTTTTCGGA+CGG + chr4_3:15829298-15829317 None:intergenic 40.0%
TCTTCAGGAGACTTATCTTC+AGG + chr4_3:15829355-15829374 None:intergenic 40.0%
CTTCTCACTCTCATCAGAAT+CGG + chr4_3:15829530-15829549 None:intergenic 40.0%
TTTCTCGCTCTCATCAGAAT+CGG + chr4_3:15829557-15829576 None:intergenic 40.0%
GAAGAAAAGGCAGATCAAAG+TGG - chr4_3:15829664-15829683 Msa0632180:CDS 40.0%
!! CTCATTAGAACCCTGGTTTT+TGG + chr4_3:15829740-15829759 None:intergenic 40.0%
! TTTCATTCAGAAGCTCTGAC+TGG + chr4_3:15829780-15829799 None:intergenic 40.0%
!!! CTTGGAGGATTTTTGAGACT+CGG + chr4_3:15829857-15829876 None:intergenic 40.0%
AAATCCTCCAAGCAATCTAC+CGG - chr4_3:15829865-15829884 Msa0632180:intron 40.0%
TTGACAACTTGAAGGCGATT+CGG - chr4_3:15829941-15829960 Msa0632180:CDS 40.0%
ATTGGGCGTTTATATCCTTC+AGG + chr4_3:15830045-15830064 None:intergenic 40.0%
GATATAAACGCCCAATCGAA+TGG - chr4_3:15830049-15830068 Msa0632180:CDS 40.0%
!! TGTACCTTCTCTCTGCTTTT+GGG + chr4_3:15830075-15830094 None:intergenic 40.0%
! TTGTACCTTCTCTCTGCTTT+TGG + chr4_3:15830076-15830095 None:intergenic 40.0%
TATTCAGCAAGCTTAGTGTG+TGG + chr4_3:15830193-15830212 None:intergenic 40.0%
!! CACTAAGCTTGCTGAATACA+AGG - chr4_3:15830195-15830214 Msa0632180:intron 40.0%
!! CTAAGCTTGCTGAATACAAG+GGG - chr4_3:15830197-15830216 Msa0632180:intron 40.0%
CTGTAACTTTCACCCAATTC+TGG + chr4_3:15830225-15830244 None:intergenic 40.0%
CAGAATTGGGTGAAAGTTAC+AGG - chr4_3:15830223-15830242 Msa0632180:intron 40.0%
AAGCGCACCATGTTTGAATT+GGG + chr4_3:15830278-15830297 None:intergenic 40.0%
CAATTCTGCCTAGCAATTCT+AGG + chr4_3:15830678-15830697 None:intergenic 40.0%
ACACGTGTGATATTGGATGT+TGG - chr4_3:15830782-15830801 Msa0632180:intron 40.0%
GTGATATTGGATGTTGGATG+CGG - chr4_3:15830788-15830807 Msa0632180:intron 40.0%
TCAAATACTCTAGCAGGGAA+GGG + chr4_3:15830959-15830978 None:intergenic 40.0%
ATCAAATACTCTAGCAGGGA+AGG + chr4_3:15830960-15830979 None:intergenic 40.0%
TGGCATCAAATACTCTAGCA+GGG + chr4_3:15830964-15830983 None:intergenic 40.0%
ATGGCATCAAATACTCTAGC+AGG + chr4_3:15830965-15830984 None:intergenic 40.0%
! GCATTTCACCAGCATCATTT+TGG - chr4_3:15831121-15831140 Msa0632180:CDS 40.0%
ACTATTTGTGCACATGTAGG+TGG - chr4_3:15831201-15831220 Msa0632180:CDS 40.0%
!! TTGAATAGAGTATTGCGACC+TGG - chr4_3:15831240-15831259 Msa0632180:CDS 40.0%
TGCCCGAAGATGTAGAAATA+TGG - chr4_3:15831304-15831323 Msa0632180:CDS 40.0%
AGAGCCTTCATTTCTGTAGA+CGG + chr4_3:15831409-15831428 None:intergenic 40.0%
AAAAGCAATGTGTTGGGAAG+TGG - chr4_3:15831432-15831451 Msa0632180:CDS 40.0%
AAAAAATACCAGGCGGCATT+AGG + chr4_3:15831580-15831599 None:intergenic 40.0%
TGATATTCCTCATTCATCGC+AGG - chr4_3:15831674-15831693 Msa0632180:CDS 40.0%
TTGTGCATGCAACTTTGCAA+TGG + chr4_3:15831706-15831725 None:intergenic 40.0%
TTACTGCTGATCATGAACAC+TGG - chr4_3:15831854-15831873 Msa0632180:CDS 40.0%
! TAAATGGGATTGGCATTCAG+TGG - chr4_3:15831902-15831921 Msa0632180:five_prime_UTR 40.0%
GACATGAGATCAGTTTATGG+AGG - chr4_3:15831946-15831965 Msa0632180:intron 40.0%
TGTCAAACACAGGGAAGTAA+TGG + chr4_3:15832021-15832040 None:intergenic 40.0%
!! AACAGAAGGTGTCAAACACA+GGG + chr4_3:15832030-15832049 None:intergenic 40.0%
!! AAACAGAAGGTGTCAAACAC+AGG + chr4_3:15832031-15832050 None:intergenic 40.0%
!!! ACCTTCTGTTTTTTGGATCC+AGG - chr4_3:15832040-15832059 Msa0632180:intron 40.0%
ACCTGGATCCAAAAAACAGA+AGG + chr4_3:15832044-15832063 None:intergenic 40.0%
TTGGGTAATGAATGTCGTTC+CGG - chr4_3:15832092-15832111 Msa0632180:intron 40.0%
TGAAGTAGATCATAGGACCT+GGG + chr4_3:15832204-15832223 None:intergenic 40.0%
ATGAAGTAGATCATAGGACC+TGG + chr4_3:15832205-15832224 None:intergenic 40.0%
TCTACTGTCTCCAATTCTGT+AGG + chr4_3:15832559-15832578 None:intergenic 40.0%
GAGACAGTAGAGTATGCTAT+TGG - chr4_3:15832568-15832587 Msa0632180:intron 40.0%
ATGAGATGCCAACAAGAGTT+AGG - chr4_3:15832639-15832658 Msa0632180:five_prime_UTR 40.0%
AGAAACAAGCTTCCATACAG+TGG + chr4_3:15832781-15832800 None:intergenic 40.0%
AATCCGTGAAACACCATGTG+GGG + chr4_3:15827938-15827957 None:intergenic 45.0%
GAATCCGTGAAACACCATGT+GGG + chr4_3:15827939-15827958 None:intergenic 45.0%
AGAATCCGTGAAACACCATG+TGG + chr4_3:15827940-15827959 None:intergenic 45.0%
GGTGTTTCACGGATTCTATG+CGG - chr4_3:15827943-15827962 Msa0632180:three_prime_UTR 45.0%
!! TTGTGGTGTTGTAACGCATG+AGG + chr4_3:15828244-15828263 None:intergenic 45.0%
CGTTGTTTGTATTCCCGAAC+AGG - chr4_3:15828940-15828959 Msa0632180:CDS 45.0%
GATGACATCGTCTGTAGTTC+CGG - chr4_3:15829117-15829136 Msa0632180:CDS 45.0%
!! GGGCATAACAGGGTTGTTTT+CGG + chr4_3:15829302-15829321 None:intergenic 45.0%
GAAAACAACCCTGTTATGCC+CGG - chr4_3:15829301-15829320 Msa0632180:intron 45.0%
GATTTCTCTTCCTGCTTTCC+GGG + chr4_3:15829322-15829341 None:intergenic 45.0%
CGATTTCTCTTCCTGCTTTC+CGG + chr4_3:15829323-15829342 None:intergenic 45.0%
CGGAAAGCAGGAAGAGAAAT+CGG - chr4_3:15829321-15829340 Msa0632180:CDS 45.0%
GTAACCAAGAGTCCGATGAA+AGG - chr4_3:15829686-15829705 Msa0632180:intron 45.0%
TAGACCTTTCATCGGACTCT+TGG + chr4_3:15829693-15829712 None:intergenic 45.0%
TCTAATGAGCTACTCCCTTC+TGG - chr4_3:15829751-15829770 Msa0632180:intron 45.0%
CTAATGAGCTACTCCCTTCT+GGG - chr4_3:15829752-15829771 Msa0632180:intron 45.0%
TAATGAGCTACTCCCTTCTG+GGG - chr4_3:15829753-15829772 Msa0632180:intron 45.0%
AATCCTCCAAGCAATCTACC+GGG - chr4_3:15829866-15829885 Msa0632180:intron 45.0%
ATTGAACCCGGTAGATTGCT+TGG + chr4_3:15829875-15829894 None:intergenic 45.0%
AGCAATCTACCGGGTTCAAT+TGG - chr4_3:15829875-15829894 Msa0632180:intron 45.0%
GCAGAGTTTCCAATTGAACC+CGG + chr4_3:15829887-15829906 None:intergenic 45.0%
AAACTCTGCAATGTCACTGC+CGG - chr4_3:15829898-15829917 Msa0632180:CDS 45.0%
CAAGGCATGGAATGTAGTCA+GGG + chr4_3:15829924-15829943 None:intergenic 45.0%
TCAAGGCATGGAATGTAGTC+AGG + chr4_3:15829925-15829944 None:intergenic 45.0%
TCCATGCCTTGACAACTTGA+AGG - chr4_3:15829933-15829952 Msa0632180:CDS 45.0%
!! GAATCGCCTTCAAGTTGTCA+AGG + chr4_3:15829942-15829961 None:intergenic 45.0%
! TGCTTTTGGGCCATTCGATT+GGG + chr4_3:15830062-15830081 None:intergenic 45.0%
AAGCTTAGTGTGTGGAACGT+TGG + chr4_3:15830185-15830204 None:intergenic 45.0%
!! AATACAAGGGGCACCAGAAT+TGG - chr4_3:15830209-15830228 Msa0632180:intron 45.0%
!! ATACAAGGGGCACCAGAATT+GGG - chr4_3:15830210-15830229 Msa0632180:intron 45.0%
!! GAGTACCTTACTTTTCCTGG+TGG - chr4_3:15830247-15830266 Msa0632180:intron 45.0%
!! TACCTTACTTTTCCTGGTGG+TGG - chr4_3:15830250-15830269 Msa0632180:intron 45.0%
TTCCACCACCAGGAAAAGTA+AGG + chr4_3:15830255-15830274 None:intergenic 45.0%
GGTGGAACCCAATTCAAACA+TGG - chr4_3:15830268-15830287 Msa0632180:intron 45.0%
GAAGCGCACCATGTTTGAAT+TGG + chr4_3:15830279-15830298 None:intergenic 45.0%
AGTCTGTACCTGATATTGCC+TGG - chr4_3:15830750-15830769 Msa0632180:intron 45.0%
GTCTGTACCTGATATTGCCT+GGG - chr4_3:15830751-15830770 Msa0632180:intron 45.0%
TCTGTACCTGATATTGCCTG+GGG - chr4_3:15830752-15830771 Msa0632180:intron 45.0%
AAAGAGAAAGCCACCAAAGC+TGG + chr4_3:15830819-15830838 None:intergenic 45.0%
TCCTGCTATATCTGCTGTGA+TGG - chr4_3:15830919-15830938 Msa0632180:CDS 45.0%
CCTGCTATATCTGCTGTGAT+GGG - chr4_3:15830920-15830939 Msa0632180:CDS 45.0%
TCTACAGCGTGCACAATGAA+TGG + chr4_3:15830984-15831003 None:intergenic 45.0%
AGAGTTCCGTGGCATATAGA+AGG - chr4_3:15831001-15831020 Msa0632180:CDS 45.0%
TGTAGGTGGCAAACTTCTCT+TGG - chr4_3:15831215-15831234 Msa0632180:CDS 45.0%
!! AATAGAGTATTGCGACCTGG+TGG - chr4_3:15831243-15831262 Msa0632180:CDS 45.0%
GACCTGGTGGTTTCTTTGTA+TGG - chr4_3:15831256-15831275 Msa0632180:CDS 45.0%
GACCATACAAAGAAACCACC+AGG + chr4_3:15831261-15831280 None:intergenic 45.0%
TCGGGCAGCTTCTGATAAAT+AGG + chr4_3:15831291-15831310 None:intergenic 45.0%
AGCCTTCATTTCTGTAGACG+GGG + chr4_3:15831407-15831426 None:intergenic 45.0%
GAGCCTTCATTTCTGTAGAC+GGG + chr4_3:15831408-15831427 None:intergenic 45.0%
GAATGTTCCTGCGATGAATG+AGG + chr4_3:15831684-15831703 None:intergenic 45.0%
CAGTTAGTTCGACAGAACGT+GGG - chr4_3:15831731-15831750 Msa0632180:CDS 45.0%
!! GGTGATTTGCTCAGTCTTTC+TGG + chr4_3:15831778-15831797 None:intergenic 45.0%
GACTGAGCAAATCACCTTAC+TGG - chr4_3:15831782-15831801 Msa0632180:CDS 45.0%
GCAGTAAAATCTTCAGGAGC+AGG + chr4_3:15831841-15831860 None:intergenic 45.0%
TGAAACGTTGTTTGTGGCAC+AGG - chr4_3:15832344-15832363 Msa0632180:intron 45.0%
CCTGAGAATCCTATCAACCT+CGG + chr4_3:15832392-15832411 None:intergenic 45.0%
AGACACTGCTGAGACCATTA+AGG - chr4_3:15832435-15832454 Msa0632180:intron 45.0%
! CTTGGTGACATCTATGCAGT+GGG - chr4_3:15832468-15832487 Msa0632180:intron 45.0%
TATGTGTCCAGAAGTCCATG+TGG - chr4_3:15832530-15832549 Msa0632180:intron 45.0%
!! GTAACATGGTGCCGTAGTTA+AGG - chr4_3:15832807-15832826 Msa0632180:five_prime_UTR 45.0%
!!! ATTTTTTATTTTTTTTTCTT+TGG - chr4_3:15832739-15832758 Msa0632180:five_prime_UTR 5.0%
ATCCGTGAAACACCATGTGG+GGG + chr4_3:15827937-15827956 None:intergenic 50.0%
CAGAGACTAGGAGAGAGTGA+CGG + chr4_3:15827969-15827988 None:intergenic 50.0%
!! GGGCAATGGGTTAAGGGAAA+AGG + chr4_3:15828054-15828073 None:intergenic 50.0%
!! GGAATGGGGCAATGGGTTAA+GGG + chr4_3:15828060-15828079 None:intergenic 50.0%
!! AGGAATGGGGCAATGGGTTA+AGG + chr4_3:15828061-15828080 None:intergenic 50.0%
TGGGAAAGGAATGGGGCAAT+GGG + chr4_3:15828067-15828086 None:intergenic 50.0%
ATGGGAAAGGAATGGGGCAA+TGG + chr4_3:15828068-15828087 None:intergenic 50.0%
TCCGTCGAGTTACTGCTCAA+CGG - chr4_3:15829048-15829067 Msa0632180:CDS 50.0%
ACCGTTGAGCAGTAACTCGA+CGG + chr4_3:15829052-15829071 None:intergenic 50.0%
CTCTATGCTTGGTTGGGCTA+TGG - chr4_3:15829092-15829111 Msa0632180:CDS 50.0%
ACAGAGCGAGGTGAAGAATC+AGG - chr4_3:15829180-15829199 Msa0632180:CDS 50.0%
! ATCCTCCTTGGTAGCTTCCT+CGG + chr4_3:15829263-15829282 None:intergenic 50.0%
GGAGTAGCTCATTAGAACCC+TGG + chr4_3:15829747-15829766 None:intergenic 50.0%
AATGAGCTACTCCCTTCTGG+GGG - chr4_3:15829754-15829773 Msa0632180:intron 50.0%
!! GCCTTCAAGTTGTCAAGGCA+TGG + chr4_3:15829937-15829956 None:intergenic 50.0%
ATCCTTCAGGAAGAGCGACA+AGG + chr4_3:15830032-15830051 None:intergenic 50.0%
!! CTGCTTTTGGGCCATTCGAT+TGG + chr4_3:15830063-15830082 None:intergenic 50.0%
ATGGCCCAAAAGCAGAGAGA+AGG - chr4_3:15830068-15830087 Msa0632180:CDS 50.0%
!! GGCGAGTACCTTACTTTTCC+TGG - chr4_3:15830244-15830263 Msa0632180:intron 50.0%
TTGAATTGGGTTCCACCACC+AGG + chr4_3:15830265-15830284 None:intergenic 50.0%
TGTTTGCCCCAGGCAATATC+AGG + chr4_3:15830761-15830780 None:intergenic 50.0%
CCCATCACAGCAGATATAGC+AGG + chr4_3:15830923-15830942 None:intergenic 50.0%
GACCCCGTCTACAGAAATGA+AGG - chr4_3:15831402-15831421 Msa0632180:CDS 50.0%
GGAAGTGGTGTCTATCAGCA+GGG - chr4_3:15831447-15831466 Msa0632180:CDS 50.0%
ATGATGATCCTAATGCCGCC+TGG - chr4_3:15831569-15831588 Msa0632180:CDS 50.0%
CCACGTTCTGTCGAACTAAC+TGG + chr4_3:15831733-15831752 None:intergenic 50.0%
CCAGTTAGTTCGACAGAACG+TGG - chr4_3:15831730-15831749 Msa0632180:CDS 50.0%
GTCCAATGTGCGCAATGTCA+TGG - chr4_3:15831924-15831943 Msa0632180:five_prime_UTR 50.0%
GTCCATGACATTGCGCACAT+TGG + chr4_3:15831929-15831948 None:intergenic 50.0%
! CAGGTTTGCAGCAGCTTTGA+GGG - chr4_3:15832059-15832078 Msa0632180:intron 50.0%
! GTTTGAAGCTGTAGTTGCCG+AGG - chr4_3:15832372-15832391 Msa0632180:intron 50.0%
! CTGTAGTTGCCGAGGTTGAT+AGG - chr4_3:15832380-15832399 Msa0632180:intron 50.0%
!! CCGAGGTTGATAGGATTCTC+AGG - chr4_3:15832389-15832408 Msa0632180:intron 50.0%
TGATAGGATTCTCAGGCCTG+AGG - chr4_3:15832396-15832415 Msa0632180:intron 50.0%
GATAGGATTCTCAGGCCTGA+GGG - chr4_3:15832397-15832416 Msa0632180:intron 50.0%
TGCTGAGACCATTAAGGAGC+TGG - chr4_3:15832441-15832460 Msa0632180:intron 50.0%
CAAGCTCTCCAGCTCCTTAA+TGG + chr4_3:15832452-15832471 None:intergenic 50.0%
CATTAAGGAGCTGGAGAGCT+TGG - chr4_3:15832450-15832469 Msa0632180:intron 50.0%
! GCTTGGTGACATCTATGCAG+TGG - chr4_3:15832467-15832486 Msa0632180:intron 50.0%
AAAGCGCGTGAAGCGAGAAG+TGG + chr4_3:15828364-15828383 None:intergenic 55.0%
TGAGGTGAAAGGACAGAGCG+AGG - chr4_3:15829168-15829187 Msa0632180:CDS 55.0%
TAAGAAGGGAGATCTGCCCG+AGG - chr4_3:15829243-15829262 Msa0632180:intron 55.0%
! TCCTCCTTGGTAGCTTCCTC+GGG + chr4_3:15829262-15829281 None:intergenic 55.0%
CCTGCTTTCCGGGCATAACA+GGG + chr4_3:15829312-15829331 None:intergenic 55.0%
TCCTGCTTTCCGGGCATAAC+AGG + chr4_3:15829313-15829332 None:intergenic 55.0%
GAACCCGGTAGATTGCTTGG+AGG + chr4_3:15829872-15829891 None:intergenic 55.0%
GCATGGAATGTAGTCAGGGC+CGG + chr4_3:15829920-15829939 None:intergenic 55.0%
AGGCAGGTAGGAGGATCTTC+AGG + chr4_3:15830012-15830031 None:intergenic 55.0%
TTCAGGAAGAGCGACAAGGC+AGG + chr4_3:15830028-15830047 None:intergenic 55.0%
TGCCTTGTCGCTCTTCCTGA+AGG - chr4_3:15830027-15830046 Msa0632180:CDS 55.0%
CACACGTGTTTGTTTGCCCC+AGG + chr4_3:15830771-15830790 None:intergenic 55.0%
!! CTGCTGTGATGGGCACAAAG+AGG - chr4_3:15830930-15830949 Msa0632180:CDS 55.0%
GGGAAGTGGTGTCTATCAGC+AGG - chr4_3:15831446-15831465 Msa0632180:CDS 55.0%
CGACAGAACGTGGGTCACAA+TGG - chr4_3:15831740-15831759 Msa0632180:CDS 55.0%
AACGTGGGTCACAATGGCCA+GGG - chr4_3:15831746-15831765 Msa0632180:CDS 55.0%
CCTCAAAGCTGCTGCAAACC+TGG + chr4_3:15832061-15832080 None:intergenic 55.0%
CCAGGTTTGCAGCAGCTTTG+AGG - chr4_3:15832058-15832077 Msa0632180:intron 55.0%
TGTCGTTCCGGTAGACTCAC+CGG - chr4_3:15832104-15832123 Msa0632180:intron 55.0%
AGTGTGTCCGGTGAGTCTAC+CGG + chr4_3:15832114-15832133 None:intergenic 55.0%
GGTGACATCTATGCAGTGGG+AGG - chr4_3:15832471-15832490 Msa0632180:intron 55.0%
GTGTCCAGAAGTCCATGTGG+CGG - chr4_3:15832533-15832552 Msa0632180:intron 55.0%
CAATTCTGTAGGCCGCCACA+TGG + chr4_3:15832548-15832567 None:intergenic 55.0%
CATGTGGCGGCCTACAGAAT+TGG - chr4_3:15832546-15832565 Msa0632180:intron 55.0%
TCTGCCCGAGGAAGCTACCA+AGG - chr4_3:15829255-15829274 Msa0632180:intron 60.0%
CCCTGTTATGCCCGGAAAGC+AGG - chr4_3:15829309-15829328 Msa0632180:intron 60.0%
AGAGCGACAAGGCAGGTAGG+AGG + chr4_3:15830021-15830040 None:intergenic 60.0%
GGAAGAGCGACAAGGCAGGT+AGG + chr4_3:15830024-15830043 None:intergenic 60.0%
GTGCACGCTGTAGAGTTCCG+TGG - chr4_3:15830990-15831009 Msa0632180:CDS 60.0%
GAACGTGGGTCACAATGGCC+AGG - chr4_3:15831745-15831764 Msa0632180:CDS 60.0%
ACGTGGGTCACAATGGCCAG+GGG - chr4_3:15831747-15831766 Msa0632180:CDS 60.0%
! AGTCTTTCTGGCCACTCCCC+TGG + chr4_3:15831766-15831785 None:intergenic 60.0%
TAGGCCGCCACATGGACTTC+TGG + chr4_3:15832540-15832559 None:intergenic 60.0%
GCCCGAGGAAGCTACCAAGG+AGG - chr4_3:15829258-15829277 Msa0632180:intron 65.0%
! GCTCTGACTGGCCCCCAGAA+GGG + chr4_3:15829768-15829787 None:intergenic 65.0%
! AGCTCTGACTGGCCCCCAGA+AGG + chr4_3:15829769-15829788 None:intergenic 65.0%
GGATGCGGCGTTGCCAGCTT+TGG - chr4_3:15830803-15830822 Msa0632180:intron 65.0%
! TGCGGCGTTGCCAGCTTTGG+TGG - chr4_3:15830806-15830825 Msa0632180:intron 65.0%
GGTCACAATGGCCAGGGGAG+TGG - chr4_3:15831752-15831771 Msa0632180:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 15827934 15832974 15827934 ID=Msa0632180;Name=Msa0632180
chr4_3 mRNA 15827934 15832974 15827934 ID=Msa0632180-mRNA-1;Parent=Msa0632180;Name=Msa0632180-mRNA-1;_AED=0.05;_eAED=0.05;_QI=420|1|1|1|0.87|0.77|9|359|835
chr4_3 exon 15827934 15828542 15827934 ID=Msa0632180-mRNA-1:exon:4502;Parent=Msa0632180-mRNA-1
chr4_3 exon 15828652 15828846 15828652 ID=Msa0632180-mRNA-1:exon:4501;Parent=Msa0632180-mRNA-1
chr4_3 exon 15828940 15829212 15828940 ID=Msa0632180-mRNA-1:exon:4500;Parent=Msa0632180-mRNA-1
chr4_3 exon 15829318 15829492 15829318 ID=Msa0632180-mRNA-1:exon:4499;Parent=Msa0632180-mRNA-1
chr4_3 exon 15829578 15829688 15829578 ID=Msa0632180-mRNA-1:exon:4498;Parent=Msa0632180-mRNA-1
chr4_3 exon 15829886 15830156 15829886 ID=Msa0632180-mRNA-1:exon:4497;Parent=Msa0632180-mRNA-1
chr4_3 exon 15830587 15830736 15830587 ID=Msa0632180-mRNA-1:exon:4496;Parent=Msa0632180-mRNA-1
chr4_3 exon 15830819 15831946 15830819 ID=Msa0632180-mRNA-1:exon:4495;Parent=Msa0632180-mRNA-1
chr4_3 exon 15832600 15832974 15832600 ID=Msa0632180-mRNA-1:exon:4494;Parent=Msa0632180-mRNA-1
chr4_3 five_prime_UTR 15832600 15832974 15832600 ID=Msa0632180-mRNA-1:five_prime_utr;Parent=Msa0632180-mRNA-1
chr4_3 five_prime_UTR 15831902 15831946 15831902 ID=Msa0632180-mRNA-1:five_prime_utr;Parent=Msa0632180-mRNA-1
chr4_3 CDS 15830819 15831901 15830819 ID=Msa0632180-mRNA-1:cds;Parent=Msa0632180-mRNA-1
chr4_3 CDS 15830587 15830736 15830587 ID=Msa0632180-mRNA-1:cds;Parent=Msa0632180-mRNA-1
chr4_3 CDS 15829886 15830156 15829886 ID=Msa0632180-mRNA-1:cds;Parent=Msa0632180-mRNA-1
chr4_3 CDS 15829578 15829688 15829578 ID=Msa0632180-mRNA-1:cds;Parent=Msa0632180-mRNA-1
chr4_3 CDS 15829318 15829492 15829318 ID=Msa0632180-mRNA-1:cds;Parent=Msa0632180-mRNA-1
chr4_3 CDS 15828940 15829212 15828940 ID=Msa0632180-mRNA-1:cds;Parent=Msa0632180-mRNA-1
chr4_3 CDS 15828652 15828846 15828652 ID=Msa0632180-mRNA-1:cds;Parent=Msa0632180-mRNA-1
chr4_3 CDS 15828293 15828542 15828293 ID=Msa0632180-mRNA-1:cds;Parent=Msa0632180-mRNA-1
chr4_3 three_prime_UTR 15827934 15828292 15827934 ID=Msa0632180-mRNA-1:three_prime_utr;Parent=Msa0632180-mRNA-1
Gene Sequence

>Msa0632180

ATGGCACAAGCGAGATATAGTAGAATAGACAATAAACGATCTCCGTCGAGTTACTGCTCAACGGTGACGATTGTTGTGTTTGTTGCTCTATGCTTGGTTGGGCTATGGATGATGACATCGTCTGTAGTTCCGGTGCAAAATGTAGATGAGTCGAATAAAAATGAGGTGAAAGGACAGAGCGAGGTGAAGAATCAGGCAACTGACACCACTAATAGCAATCCTCAGAAGTTTGAAGATAAGAAGGGAGATCTGCCCGAGGAAGCTACCAAGGAGGATAACAATGCTAAGCCGTCCGAAAACAACCCTGTTATGCCCGGAAAGCAGGAAGAGAAATCGGATGAAAAGCCTGAAGATAAGTCTCCTGAAGATACCAAGATGACATATACTGATCCAAATCAGAACAAGAAGACATCTGATTCGGATGAGAGCAATAACAAATCTGGTTCTGATGAGAGCAATAACAAATCTGGTTCTGATGAGAGCAATAACAAATCTGGTTCTGATGAGGACAACAAGAAGTCCGATTCTGATGAGAGTGAGAAGAAGTCCGATTCTGATGAGAGCGAGAAAAAATTGGATTCAAACGATAATAAATCTGGTTCAGATGCAAGTGAAAATAAAAAGGATGAGTCGAGTGAAACAACAGATAGTAAGACAGAAGAAAAGGCAGATCAAAGTGGTAACCAAGAGTCCGATGAAAGGTCTAATGAGAAGAAAACAGATGAAAATACCAAAAACCAGGGTTCTAATGAGCTACTCCCTTCTGGGGGCCAGTCAGAGCTTCTGAATGAAACTACAACTCAAACTGGATCTTTTTCAACTCAGGCAGCAGAGTCAAAGTCTGAAACCGAGTCTCAAAAATCCTCCAAGCAATCTACCGGGTTCAATTGGAAACTCTGCAATGTCACTGCCGGCCCTGACTACATTCCATGCCTTGACAACTTGAAGGCGATTCGGAACCTTAAAACTACTAAACACTATGAACACAGAGAAAGGCAATGTCCTGAAGATCCTCCTACCTGCCTTGTCGCTCTTCCTGAAGGATATAAACGCCCAATCGAATGGCCCAAAAGCAGAGAGAAGATATGGTATTCCAACGTTCCACACACTAAGCTTGCTGAATACAAGGGGCACCAGAATTGGGTGAAAGTTACAGGCGAGTACCTTACTTTTCCTGGTGGTGGAACCCAATTCAAACATGGTGCGCTTCATTACATTGACACCATACAACAGTCTGTACCTGATATTGCCTGGGGCAAACAAACACGTGTGATATTGGATGTTGGATGCGGCGTTGCCAGCTTTGGTGGCTTTCTCTTTGAAAGAGATGTACTTGCAATGTCATTTGCACCAAAAGATGAACATGAAGCTCAGGTACAATTTGCACTTGAAAGGGGAATTCCTGCTATATCTGCTGTGATGGGCACAAAGAGGCTTCCCTTCCCTGCTAGAGTATTTGATGCCATTCATTGTGCACGCTGTAGAGTTCCGTGGCATATAGAAGGTGGCAAACTTCTCTTGGAGTTGAATAGAGTATTGCGACCTGGTGGTTTCTTTGTATGGTCTGCTACTCCTATTTATCAGAAGCTGCCCGAAGATGTAGAAATATGGAACGAAATGAAGGCTCTAACAAAAGCAATGTGTTGGGAAGTGGTGTCTATCAGCAGGGATAAACTTAATAAAGTTGGTATAGCTGTATACAAGAAGCCAACTTCTAATGAGTGTTATGAGAAACGTTCCAAGAATGAGCCTTCTATATGTCAAGACTATGATGATCCTAATGCCGCCTGGAACATTCCATTGCAAAGTTGCATGCACAAAGCGCCAGTTAGTTCGACAGAACGTGGGTCACAATGGCCAGGGGAGTGGCCAGAAAGACTGAGCAAATCACCTTACTGGTTATCAAATTCTGAAGTTGGAGTTTATGGAAAACCTGCTCCTGAAGATTTTACTGCTGATCATGAACACTGGAAACGTGTAGTGTCCAAGTCTTATCTAAATGGGATTGGCATTCAGTGGTCCAATGTGCGCAATGTCATGGACATGAGATCAGTTTATGGAGGGTTTGCAGCAGCTTTGAGGGATTTGAAAATTTGGGTAATGAATGTCGTTCCGGTAGACTCACCGGACACACTTCCAATTATTTATGAACGTGGTCTGTTTGGCATATATCATGATTGGTGTGAATCATTTAGCACATATCCCAGGTCCTATGATCTACTTCATGCAGATCATCTGTTTTCAAAGCTTAAGAAAAGGTGCAAGTTTGAAGCTGTAGTTGCCGAGGTTGATAGGATTCTCAGGCCTGAGGGAAAGCTTATTGTCCGAGACACTGCTGAGACCATTAAGGAGCTGGAGAGCTTGGTGACATCTATGCAGTGGGAGGTTCGTATGACTTACACTAAAGATTTGCAGGGCATTTTATGTGTCCAGAAGTCCATGTGGCGGCCTACAGAATTGGAGACAGTAGAGTATGCTATTGGCAGCATACCGAATTCGAGACAGTAG
Protein sequence

>Msa0632180

MAQARYSRIDNKRSPSSYCSTVTIVVFVALCLVGLWMMTSSVVPVQNVDESNKNEVKGQSEVKNQATDTTNSNPQKFEDKKGDLPEEATKEDNNAKPSENNPVMPGKQEEKSDEKPEDKSPEDTKMTYTDPNQNKKTSDSDESNNKSGSDESNNKSGSDESNNKSGSDEDNKKSDSDESEKKSDSDESEKKLDSNDNKSGSDASENKKDESSETTDSKTEEKADQSGNQESDERSNEKKTDENTKNQGSNELLPSGGQSELLNETTTQTGSFSTQAAESKSETESQKSSKQSTGFNWKLCNVTAGPDYIPCLDNLKAIRNLKTTKHYEHRERQCPEDPPTCLVALPEGYKRPIEWPKSREKIWYSNVPHTKLAEYKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDTIQQSVPDIAWGKQTRVILDVGCGVASFGGFLFERDVLAMSFAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPARVFDAIHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWNEMKALTKAMCWEVVSISRDKLNKVGIAVYKKPTSNECYEKRSKNEPSICQDYDDPNAAWNIPLQSCMHKAPVSSTERGSQWPGEWPERLSKSPYWLSNSEVGVYGKPAPEDFTADHEHWKRVVSKSYLNGIGIQWSNVRNVMDMRSVYGGFAAALRDLKIWVMNVVPVDSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLKKRCKFEAVVAEVDRILRPEGKLIVRDTAETIKELESLVTSMQWEVRMTYTKDLQGILCVQKSMWRPTELETVEYAIGSIPNSRQ*