AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0945090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945090 MtrunA17_Chr1g0210321 93.434 198 13 0 1 198 1 198 7.91e-133 389
Msa0945090 MtrunA17_Chr1g0210321 77.255 255 40 4 136 373 243 496 1.14e-116 347
Msa0945090 MtrunA17_Chr1g0180381 59.447 217 84 1 1 213 1 217 1.60e-86 270
Msa0945090 MtrunA17_Chr1g0180381 45.699 186 81 4 175 356 303 472 7.09e-37 139
Msa0945090 MtrunA17_Chr7g0264891 62.088 182 66 2 1 181 1 180 4.62e-77 245
Msa0945090 MtrunA17_Chr7g0264891 49.438 178 70 3 187 363 310 468 9.17e-41 149
Msa0945090 MtrunA17_Chr4g0058051 61.818 165 56 2 35 197 29 188 6.42e-66 214
Msa0945090 MtrunA17_Chr4g0058051 59.596 99 39 1 187 284 302 400 3.04e-28 114
Msa0945090 MtrunA17_Chr6g0458201 64.516 155 48 2 35 187 27 176 1.88e-65 213
Msa0945090 MtrunA17_Chr6g0458201 53.398 103 48 0 187 289 300 402 1.28e-29 118
Msa0945090 MtrunA17_Chr1g0169731 59.477 153 59 1 35 187 73 222 8.09e-61 202
Msa0945090 MtrunA17_Chr1g0169731 61.386 101 39 0 187 287 346 446 5.33e-30 119
Msa0945090 MtrunA17_Chr3g0116521 62.329 146 52 1 35 180 29 171 8.67e-61 201
Msa0945090 MtrunA17_Chr3g0116521 57.732 97 41 0 187 283 302 398 1.89e-26 109
Msa0945090 MtrunA17_Chr4g0060211 49.733 187 88 2 33 213 50 236 2.16e-55 187
Msa0945090 MtrunA17_Chr4g0060211 50.515 97 46 1 187 283 332 426 1.82e-22 98.2
Msa0945090 MtrunA17_Chr7g0237761 55.556 153 65 1 35 187 67 216 5.20e-55 187
Msa0945090 MtrunA17_Chr7g0237761 62.376 101 38 0 187 287 340 440 3.15e-30 120
Msa0945090 MtrunA17_Chr3g0123331 56.291 151 63 2 30 180 23 170 3.29e-52 178
Msa0945090 MtrunA17_Chr3g0123331 51.020 98 47 1 187 283 301 398 1.16e-26 109
Msa0945090 MtrunA17_Chr3g0123321 55.862 145 58 2 35 179 29 167 1.25e-51 177
Msa0945090 MtrunA17_Chr3g0123321 57.895 95 40 0 187 281 299 393 4.95e-23 99.4
Msa0945090 MtrunA17_Chr6g0452861 46.354 192 92 3 33 213 61 252 1.16e-50 176
Msa0945090 MtrunA17_Chr6g0452861 44.762 105 53 2 187 286 348 452 2.34e-20 92.0
Msa0945090 MtrunA17_Chr5g0416061 59.259 135 55 0 52 186 85 219 1.90e-49 172
Msa0945090 MtrunA17_Chr5g0416061 42.105 95 54 1 187 280 344 438 2.93e-19 89.0
Msa0945090 MtrunA17_Chr8g0362561 59.690 129 52 0 58 186 90 218 3.03e-48 169
Msa0945090 MtrunA17_Chr8g0362561 44.660 103 49 2 187 281 343 445 8.18e-21 93.6
Msa0945090 MtrunA17_Chr4g0075231 62.500 120 44 1 67 186 39 157 1.44e-46 163
Msa0945090 MtrunA17_Chr4g0075231 44.792 96 50 2 187 281 282 375 2.75e-18 85.5
Msa0945090 MtrunA17_Chr2g0288921 60.800 125 48 1 62 186 58 181 6.93e-45 159
Msa0945090 MtrunA17_Chr2g0288921 46.875 96 48 2 187 281 306 399 6.37e-19 87.4
Msa0945090 MtrunA17_Chr5g0416041 55.975 159 65 2 33 186 61 219 5.06e-44 157
Msa0945090 MtrunA17_Chr5g0416041 42.708 96 54 1 187 281 344 439 1.65e-20 92.4
Msa0945090 MtrunA17_Chr7g0216581 46.243 173 75 2 33 187 50 222 1.49e-39 145
Msa0945090 MtrunA17_Chr7g0216581 45.918 98 52 1 187 283 346 443 8.22e-20 90.5
Msa0945090 MtrunA17_Chr8g0373761 37.241 145 85 4 48 187 21 164 1.63e-23 100
Msa0945090 MtrunA17_Chr8g0373721 39.024 123 71 3 67 186 42 163 2.34e-23 100
Msa0945090 MtrunA17_Chr3g0089181 36.879 141 79 4 49 186 11 144 2.83e-23 99.8
Msa0945090 MtrunA17_Chr5g0403481 42.975 121 63 4 64 180 38 156 4.89e-22 96.7
Msa0945090 MtrunA17_Chr5g0403461 42.975 121 63 4 64 180 38 156 4.89e-22 96.7
Msa0945090 MtrunA17_Chr5g0403491 42.975 121 63 4 64 180 38 156 4.89e-22 96.7
Msa0945090 MtrunA17_Chr5g0414541 43.103 116 60 4 64 175 38 151 1.77e-21 94.7
Msa0945090 MtrunA17_Chr8g0373701 37.398 123 73 3 67 186 97 218 1.81e-21 95.5
Msa0945090 MtrunA17_Chr5g0403391 41.322 121 65 4 64 180 38 156 2.90e-21 94.4
Msa0945090 MtrunA17_Chr8g0373731 39.316 117 67 3 67 180 42 157 3.79e-21 94.0
Msa0945090 MtrunA17_Chr5g0403411 40.000 120 66 4 64 179 38 155 4.17e-20 90.9
Msa0945090 MtrunA17_Chr2g0288901 46.465 99 48 4 187 284 55 149 2.05e-18 81.6
Msa0945090 MtrunA17_Chr1g0212931 42.202 109 57 2 81 189 10 112 3.17e-18 84.7
Msa0945090 MtrunA17_Chr1g0182021 44.340 106 53 2 84 189 62 161 1.11e-13 71.6
Msa0945090 MtrunA17_Chr4g0031851 40.964 83 47 2 106 187 28 109 2.67e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945090 AT5G04310.3 63.636 198 56 2 6 187 18 215 5.13e-80 253
Msa0945090 AT5G04310.3 80.000 100 20 0 188 287 340 439 4.51e-50 175
Msa0945090 AT5G04310.1 63.636 198 56 2 6 187 18 215 2.23e-79 253
Msa0945090 AT5G04310.1 65.190 158 49 4 188 340 340 496 1.79e-52 182
Msa0945090 AT5G04310.2 63.636 198 56 2 6 187 18 215 2.23e-79 253
Msa0945090 AT5G04310.2 65.190 158 49 4 188 340 340 496 1.79e-52 182
Msa0945090 AT3G53190.1 60.215 186 66 4 1 179 2 186 6.62e-70 227
Msa0945090 AT3G53190.1 52.326 172 67 5 187 358 318 474 1.60e-41 152
Msa0945090 AT3G54920.1 59.770 174 59 2 25 187 27 200 7.90e-70 227
Msa0945090 AT3G54920.1 72.816 103 27 1 188 289 316 418 1.58e-44 160
Msa0945090 AT5G63180.1 53.571 196 79 2 2 197 29 212 5.55e-67 218
Msa0945090 AT5G63180.1 54.369 103 45 1 187 287 326 428 9.05e-27 110
Msa0945090 AT1G67750.1 63.871 155 49 2 35 187 33 182 2.21e-65 213
Msa0945090 AT1G67750.1 54.639 97 44 0 187 283 304 400 1.32e-23 101
Msa0945090 AT4G24780.2 54.190 179 76 2 2 180 1 173 6.62e-63 207
Msa0945090 AT4G24780.2 57.732 97 41 0 187 283 304 400 2.63e-25 106
Msa0945090 AT4G24780.1 54.190 179 76 2 2 180 1 173 6.62e-63 207
Msa0945090 AT4G24780.1 57.732 97 41 0 187 283 304 400 2.63e-25 106
Msa0945090 AT3G07010.1 51.852 189 82 4 1 187 7 188 1.20e-60 201
Msa0945090 AT3G07010.1 60.825 97 38 0 187 283 312 408 1.03e-29 119
Msa0945090 AT1G04680.1 50.490 204 79 7 1 187 3 201 1.39e-60 201
Msa0945090 AT1G04680.1 61.856 97 37 0 187 283 325 421 1.54e-30 121
Msa0945090 AT3G07010.2 59.028 144 56 1 44 187 15 155 9.93e-59 195
Msa0945090 AT3G07010.2 60.825 97 38 0 187 283 279 375 7.30e-30 118
Msa0945090 AT4G13710.1 57.143 154 65 1 35 187 89 242 1.77e-58 197
Msa0945090 AT4G13710.1 62.245 98 37 0 187 284 366 463 6.91e-36 136
Msa0945090 AT4G13710.2 57.143 154 65 1 35 187 70 223 1.96e-58 196
Msa0945090 AT4G13710.2 62.245 98 37 0 187 284 347 444 7.23e-36 136
Msa0945090 AT3G24670.1 57.325 157 64 1 30 186 58 211 6.46e-58 194
Msa0945090 AT3G24670.1 59.794 97 39 0 187 283 336 432 7.25e-27 111
Msa0945090 AT3G24230.1 51.872 187 77 4 35 213 71 252 6.65e-55 187
Msa0945090 AT3G24230.1 56.436 101 43 1 187 287 348 447 7.24e-31 122
Msa0945090 AT4G13210.2 55.263 152 64 2 30 179 53 202 2.16e-53 182
Msa0945090 AT4G13210.2 61.856 97 37 0 187 283 334 430 7.11e-29 116
Msa0945090 AT4G13210.1 55.263 152 64 2 30 179 16 165 2.36e-53 182
Msa0945090 AT4G13210.1 61.856 97 37 0 187 283 297 393 5.85e-29 116
Msa0945090 AT5G48900.1 49.123 171 82 2 12 180 15 182 2.79e-53 182
Msa0945090 AT5G48900.1 57.732 97 41 0 187 283 313 409 4.40e-25 105
Msa0945090 AT3G27400.1 51.190 168 77 3 12 179 14 176 2.14e-52 179
Msa0945090 AT3G27400.1 48.515 101 52 0 187 287 308 408 1.62e-25 107
Msa0945090 AT1G14420.1 51.462 171 67 2 33 187 55 225 2.19e-52 181
Msa0945090 AT1G14420.1 47.115 104 49 1 187 284 349 452 8.75e-24 102
Msa0945090 AT3G27400.2 51.190 168 77 3 12 179 18 180 2.52e-52 179
Msa0945090 AT3G27400.2 48.515 101 52 0 187 287 312 412 1.74e-25 107
Msa0945090 AT5G55720.1 58.197 122 51 0 66 187 48 169 2.77e-48 168
Msa0945090 AT5G55720.1 51.429 105 48 2 182 283 280 384 4.16e-23 100
Msa0945090 AT2G02720.1 47.027 185 82 2 27 195 45 229 5.59e-48 169
Msa0945090 AT2G02720.1 43.269 104 53 1 187 284 345 448 2.51e-20 92.4
Msa0945090 AT1G11920.1 61.789 123 46 1 64 186 34 155 9.06e-48 166
Msa0945090 AT1G11920.1 46.316 95 49 2 188 281 281 374 9.52e-20 90.1
Msa0945090 AT3G01270.1 50.314 159 77 1 57 213 115 273 1.69e-46 165
Msa0945090 AT3G01270.1 42.424 99 55 2 187 283 369 467 6.59e-20 91.3
Msa0945090 AT5G15110.1 49.057 159 79 1 57 213 112 270 4.79e-46 164
Msa0945090 AT5G15110.1 45.098 102 48 3 187 283 366 464 3.91e-21 95.1
Msa0945090 AT1G30350.1 55.000 120 53 1 67 186 36 154 1.37e-41 150
Msa0945090 AT1G30350.1 40.426 94 55 1 188 281 266 358 2.10e-14 74.3
Msa0945090 AT4G22080.1 55.833 120 52 1 67 186 47 165 8.95e-41 148
Msa0945090 AT4G22080.1 44.860 107 55 3 188 293 291 394 1.33e-16 80.9
Msa0945090 AT4G22090.1 55.833 120 52 1 67 186 47 165 1.81e-40 147
Msa0945090 AT4G22090.1 43.925 107 56 3 188 293 291 394 1.97e-15 77.4
Msa0945090 AT3G55140.1 45.283 106 52 2 84 189 14 113 6.40e-19 87.0
Msa0945090 AT3G09540.2 47.170 106 50 2 84 189 61 160 5.83e-17 80.9
Msa0945090 AT3G09540.3 47.170 106 50 2 84 189 61 160 7.86e-17 81.6
Msa0945090 AT3G09540.1 47.170 106 50 2 84 189 61 160 8.63e-17 81.3
Msa0945090 AT5G09280.1 45.455 88 46 2 100 186 6 92 4.78e-15 75.5
Msa0945090 AT3G55140.2 49.275 69 34 1 121 189 22 89 2.19e-12 67.8

Find 145 sgRNAs with CRISPR-Local

Find 485 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATTTGCTCCGCGGATTT+TGG 0.170833 6_3:-23708143 None:intergenic
AATGACGATGGGGACTTCTT+TGG 0.240587 6_3:+23712642 Msa0945090:CDS
GTTCCTGGAACTGGATTTGC+TGG 0.280233 6_3:-23707159 None:intergenic
AAATTAGCGGATTGCGGAAT+TGG 0.301743 6_3:+23707066 Msa0945090:CDS
GCGGATTGCGGAATTGGTTT+TGG 0.302604 6_3:+23707072 Msa0945090:CDS
GACGGTTTGCGGACCAGTTT+GGG 0.311644 6_3:-23707041 None:intergenic
CGCTAATTTCTGACGGTTTG+CGG 0.321400 6_3:-23707052 None:intergenic
GCAATCGTCTACCGGGTTTC+CGG 0.325899 6_3:-23707007 None:intergenic
AGACGAACCTCTTTAGCATT+TGG 0.329352 6_3:-23707825 None:intergenic
TACTATGATGATCTCACAAT+TGG 0.332704 6_3:+23712805 Msa0945090:exon
GAAGGGGATATAATGGTAAA+TGG 0.334776 6_3:+23708056 Msa0945090:CDS
AGTTCGTGAACCACAGCTTC+AGG 0.341841 6_3:-23706825 None:intergenic
ATGACGATGGGGACTTCTTT+GGG 0.346686 6_3:+23712643 Msa0945090:CDS
TGACGGTTTGCGGACCAGTT+TGG 0.355210 6_3:-23707042 None:intergenic
GAATTATTGAGCAGGGATAA+TGG 0.357438 6_3:+23712537 Msa0945090:intron
GACCAAGGCAATTGTTTAAC+CGG 0.363053 6_3:+23706988 Msa0945090:CDS
ACGGCGTGACGGAGTGTTCC+TGG 0.372447 6_3:-23707174 None:intergenic
ATGAATGGAGTGGTTGGAAT+TGG 0.374993 6_3:+23708027 Msa0945090:CDS
GAAGTCCCCATCGTCATTGC+TGG 0.388593 6_3:-23712637 None:intergenic
TGACGGAGTGTTCCTGGAAC+TGG 0.403848 6_3:-23707168 None:intergenic
TTATCACGTTTGAGATGTAT+TGG 0.404588 6_3:-23707338 None:intergenic
TAGCGGTGCTGCTTGGCTGC+TGG 0.409238 6_3:-23712682 None:intergenic
TTCTTTGTACCGTCAGGGGT+GGG 0.410262 6_3:+23708083 Msa0945090:CDS
GCTGGCGATGCGACCCAAAC+TGG 0.410954 6_3:+23707028 Msa0945090:CDS
AGGGTGCTAGCGGTGCTGCT+TGG 0.418501 6_3:-23712689 None:intergenic
ATGGGTAAGTAAGCAAGTTA+AGG 0.418760 6_3:-23706618 None:intergenic
GTTAAGGAAGAAGGGGTTGA+GGG 0.419314 6_3:-23706602 None:intergenic
GAAACCCGGTAGACGATTGC+TGG 0.420048 6_3:+23707010 Msa0945090:CDS
CAAGGGTTACAATGGGAATG+GGG 0.421820 6_3:+23712611 Msa0945090:CDS
GGAGCATTCTTTGTACCGTC+AGG 0.427296 6_3:+23708077 Msa0945090:CDS
GTAAGCAAGTTAAGGAAGAA+GGG 0.428039 6_3:-23706610 None:intergenic
ATTAAAAGAATGCAGCTCAT+AGG 0.428979 6_3:-23706729 None:intergenic
AGTAAGCAAGTTAAGGAAGA+AGG 0.429697 6_3:-23706611 None:intergenic
ACCATGTACTCTGGTGTATT+CGG 0.434723 6_3:+23708173 Msa0945090:CDS
TGGATTTGCTGGGTCGTTGT+CGG 0.436703 6_3:-23707148 None:intergenic
AGTTAAGGAAGAAGGGGTTG+AGG 0.436769 6_3:-23706603 None:intergenic
GAGGACGGAAGGGGATATAA+TGG 0.441518 6_3:+23708049 Msa0945090:CDS
TCTTCAATGCACAACAACTT+AGG 0.443195 6_3:-23706508 None:intergenic
GACCCAGCAAATCCAGTTCC+AGG 0.444172 6_3:+23707156 Msa0945090:CDS
TTGGTGGGGTAAGGTGAGGT+TGG 0.444612 6_3:-23706793 None:intergenic
ACTATGATGATCTCACAATT+GGG 0.445655 6_3:+23712806 Msa0945090:exon
CGCGCCGCCATGGGAGGTAA+AGG 0.452207 6_3:+23707096 Msa0945090:CDS
GTAAGGATGTTGGTGGGGTA+AGG 0.452310 6_3:-23706802 None:intergenic
CATCGCCAGCAATCGTCTAC+CGG 0.455027 6_3:-23707015 None:intergenic
TTACCCTGACTGTTAATAGT+AGG 0.455282 6_3:-23707780 None:intergenic
TAATCCTACTATTAACAGTC+AGG 0.457298 6_3:+23707776 Msa0945090:CDS
CCCATTGTAACCCTTGCTGT+TGG 0.468036 6_3:-23712604 None:intergenic
AAGGGTTACAATGGGAATGG+GGG 0.475311 6_3:+23712612 Msa0945090:CDS
GATAATGGAGATATATATCC+CGG 0.478536 6_3:+23712552 Msa0945090:CDS
AACGGTGGTGGGACCACGAC+AGG 0.479684 6_3:+23712579 Msa0945090:CDS
GGTTGGAATTGGAGGACGGA+AGG 0.480151 6_3:+23708038 Msa0945090:CDS
GCAAGGGTTACAATGGGAAT+GGG 0.483203 6_3:+23712610 Msa0945090:CDS
TGGATACAAATGATAATGAA+TGG 0.489364 6_3:+23708012 Msa0945090:CDS
TGAACCACAGCTTCAGGGTA+AGG 0.490310 6_3:-23706819 None:intergenic
TTCCGGTTAAACAATTGCCT+TGG 0.492172 6_3:-23706990 None:intergenic
ATGATAATGAATGGAGTGGT+TGG 0.493562 6_3:+23708021 Msa0945090:CDS
TCTTTGTACCGTCAGGGGTG+GGG 0.494905 6_3:+23708084 Msa0945090:CDS
TTGGAATTGGAGGACGGAAG+GGG 0.495602 6_3:+23708040 Msa0945090:CDS
GGTCCCACCACCGTTGAACC+CGG 0.506993 6_3:-23712571 None:intergenic
AAATACAATTGATGATGAGT+AGG 0.507834 6_3:-23712709 None:intergenic
TACAAAACCGTCGACGGCCG+CGG 0.508128 6_3:+23707276 Msa0945090:CDS
TTCCGATCCAAATGCTAAAG+AGG 0.508833 6_3:+23707818 Msa0945090:CDS
AGCAAGGGTTACAATGGGAA+TGG 0.513689 6_3:+23712609 Msa0945090:CDS
GAGTGTGATGCAACCGTGGC+CGG 0.515352 6_3:-23707316 None:intergenic
ATTCTTTGTACCGTCAGGGG+TGG 0.517273 6_3:+23708082 Msa0945090:CDS
ATTTGCGCCGCGGCCGTCGA+CGG 0.518041 6_3:-23707283 None:intergenic
TGCACAACAACTTAGGAAGC+TGG 0.518282 6_3:-23706501 None:intergenic
AATGGAGTGGTTGGAATTGG+AGG 0.522305 6_3:+23708030 Msa0945090:CDS
TGATAATAGAATATCATAGT+TGG 0.522598 6_3:-23712781 None:intergenic
GGCGCAAATGTTCAAATCAC+CGG 0.523686 6_3:+23707297 Msa0945090:CDS
TCTTTAGCATTTGGATCGGA+AGG 0.525976 6_3:-23707816 None:intergenic
GATATATATCCCGGGTTCAA+CGG 0.530636 6_3:+23712561 Msa0945090:CDS
CACCAGAGTACATGGTAAGC+TGG 0.533022 6_3:-23708166 None:intergenic
GTTGGAATTGGAGGACGGAA+GGG 0.533218 6_3:+23708039 Msa0945090:CDS
CTTGCTGTTGGCTCCTGTCG+TGG 0.533400 6_3:-23712592 None:intergenic
CGCAATCCGCTAATTTCTGA+CGG 0.535146 6_3:-23707059 None:intergenic
TTAAGGAAGAAGGGGTTGAG+GGG 0.535427 6_3:-23706601 None:intergenic
TTCTTTGGGATGATATTCAA+AGG 0.538599 6_3:+23712657 Msa0945090:CDS
TATCCCGGGTTCAACGGTGG+TGG 0.538874 6_3:+23712567 Msa0945090:CDS
AGGGTTACAATGGGAATGGG+GGG 0.539386 6_3:+23712613 Msa0945090:CDS
GAGGTTTATTGTCATTGAAG+AGG 0.539582 6_3:-23707229 None:intergenic
GCCAACAGCAAGGGTTACAA+TGG 0.540333 6_3:+23712603 Msa0945090:CDS
GAGATAAGAAAGAGCACAAG+AGG 0.541289 6_3:-23706755 None:intergenic
CAATTGTTTAACCGGAAACC+CGG 0.544194 6_3:+23706996 Msa0945090:CDS
GTTCGTGAACCACAGCTTCA+GGG 0.545323 6_3:-23706824 None:intergenic
CTGGTGTATTCGGTGATCCC+AGG 0.546191 6_3:+23708183 Msa0945090:CDS
TAAGTTGTTGTGCATTGAAG+AGG 0.547126 6_3:+23706510 Msa0945090:five_prime_UTR
TAAGCAAGTTAAGGAAGAAG+GGG 0.549197 6_3:-23706609 None:intergenic
TTTGGTCGCGCCGCCATGGG+AGG 0.551573 6_3:+23707090 Msa0945090:CDS
ATCGCCAGCAATCGTCTACC+GGG 0.553121 6_3:-23707014 None:intergenic
CTGACCTCCTTTACCTCCCA+TGG 0.554855 6_3:-23707103 None:intergenic
GAGCATTCTTTGTACCGTCA+GGG 0.555948 6_3:+23708078 Msa0945090:CDS
ACCGAATACACCAGAGTACA+TGG 0.557818 6_3:-23708174 None:intergenic
TTCAGGGTAAGGATGTTGGT+GGG 0.561844 6_3:-23706808 None:intergenic
AATTCTTACAAAACCGTCGA+CGG 0.563410 6_3:+23707270 Msa0945090:CDS
CAGCTTCAGGGTAAGGATGT+TGG 0.564738 6_3:-23706812 None:intergenic
AATACAATTGATGATGAGTA+GGG 0.567604 6_3:-23712708 None:intergenic
TTCCTGGAACTGGATTTGCT+GGG 0.567740 6_3:-23707158 None:intergenic
GAGTGGTTCGTCTTGAATCA+CGG 0.568199 6_3:-23707193 None:intergenic
TGATTCAAGACGAACCACTC+TGG 0.570543 6_3:+23707196 Msa0945090:CDS
CCAACAGCAAGGGTTACAAT+GGG 0.571803 6_3:+23712604 Msa0945090:CDS
AACCAGCTTACCATGTACTC+TGG 0.574293 6_3:+23708164 Msa0945090:CDS
AGTGATGAACATGGATATTG+TGG 0.574584 6_3:-23707362 None:intergenic
AACCTCTTTAGCATTTGGAT+CGG 0.577413 6_3:-23707820 None:intergenic
TGATGATCTCACAATTGGGG+TGG 0.578180 6_3:+23712810 Msa0945090:exon
GAGTGGTTGGAATTGGAGGA+CGG 0.578221 6_3:+23708034 Msa0945090:CDS
CAGTGGGAAATGTATGCTAT+CGG 0.579655 6_3:+23707744 Msa0945090:intron
CTTCAGGGTAAGGATGTTGG+TGG 0.587281 6_3:-23706809 None:intergenic
GATGATCTCACAATTGGGGT+GGG 0.588528 6_3:+23712811 Msa0945090:exon
GGGGATGAGTGCTCAGTATG+CGG 0.590141 6_3:+23708103 Msa0945090:CDS
GTCCCACCACCGTTGAACCC+GGG 0.593981 6_3:-23712570 None:intergenic
GATCGGAAGGAGCTGTGTAA+CGG 0.594179 6_3:-23707803 None:intergenic
ATTTGCTGGGTCGTTGTCGG+AGG 0.596182 6_3:-23707145 None:intergenic
GCACTCATCCCCACCCCTGA+CGG 0.600409 6_3:-23708092 None:intergenic
AATGTTCAAATCACCGGCCA+CGG 0.603117 6_3:+23707303 Msa0945090:CDS
GCCGCCATGGGAGGTAAAGG+AGG 0.603203 6_3:+23707099 Msa0945090:CDS
ATCCCGGGTTCAACGGTGGT+GGG 0.607721 6_3:+23712568 Msa0945090:CDS
AGCATTCTTTGTACCGTCAG+GGG 0.608432 6_3:+23708079 Msa0945090:CDS
CGTCAGAAATTAGCGGATTG+CGG 0.614147 6_3:+23707060 Msa0945090:CDS
CGTCTTGAATCACGGCGTGA+CGG 0.617300 6_3:-23707185 None:intergenic
CACGACAGGAGCCAACAGCA+AGG 0.620533 6_3:+23712593 Msa0945090:CDS
ACATCCTTACCCTGAAGCTG+TGG 0.625686 6_3:+23706815 Msa0945090:CDS
TGAAGATGAGTTCATGACGG+AGG 0.630356 6_3:-23707248 None:intergenic
ATAATAATGACTTGTGTGAG+AGG 0.633787 6_3:-23706670 None:intergenic
GATGTTGGTGGGGTAAGGTG+AGG 0.633904 6_3:-23706797 None:intergenic
CTATGATGATCTCACAATTG+GGG 0.634323 6_3:+23712807 Msa0945090:exon
TCAGGGTAAGGATGTTGGTG+GGG 0.638203 6_3:-23706807 None:intergenic
GGGGTCCAGCAATGACGATG+GGG 0.639197 6_3:+23712632 Msa0945090:CDS
GATGAGTGCTCAGTATGCGG+AGG 0.641480 6_3:+23708106 Msa0945090:CDS
AATCCTACTATTAACAGTCA+GGG 0.652401 6_3:+23707777 Msa0945090:CDS
ACGACAGGAGCCAACAGCAA+GGG 0.655554 6_3:+23712594 Msa0945090:CDS
ATAATGGAGATATATATCCC+GGG 0.660215 6_3:+23712553 Msa0945090:CDS
TGATTTGAACATTTGCGCCG+CGG 0.665434 6_3:-23707293 None:intergenic
AATTGAAGATGAGTTCATGA+CGG 0.666509 6_3:-23707251 None:intergenic
ACAAATGATAATGAATGGAG+TGG 0.669476 6_3:+23708017 Msa0945090:CDS
GAACTGCTCTCAAAAGACCA+AGG 0.670634 6_3:+23706973 Msa0945090:CDS
TGGGAAATGTATGCTATCGG+AGG 0.671777 6_3:+23707747 Msa0945090:CDS
GAGGAGAAGATTATCCAGAG+TGG 0.673042 6_3:-23707210 None:intergenic
CGCAAACCGTCAGAAATTAG+CGG 0.675608 6_3:+23707053 Msa0945090:CDS
ATATATCCCGGGTTCAACGG+TGG 0.685525 6_3:+23712564 Msa0945090:CDS
ACCTCCTTTACCTCCCATGG+CGG 0.692724 6_3:-23707100 None:intergenic
AAGCTGGTTAATTTGCTCCG+CGG 0.697685 6_3:-23708150 None:intergenic
AAGTGTACAGCCAAAATCCG+CGG 0.698539 6_3:+23708133 Msa0945090:CDS
GATGATGAGTAGGGTGCTAG+CGG 0.717031 6_3:-23712699 None:intergenic
ATTGGAGTGTGATGCAACCG+TGG 0.724281 6_3:-23707320 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAATCATGTTAATAT+AGG + chr6_3:23708286-23708305 Msa0945090:intron 10.0%
!! AAATAAAAAATGGAAAATTA+AGG + chr6_3:23709401-23709420 Msa0945090:intron 10.0%
!!! TTTTTAAAAGAAATTAATGA+CGG + chr6_3:23710117-23710136 Msa0945090:intron 10.0%
!!! TATTTTTCTTTGTAAAATTA+TGG - chr6_3:23711193-23711212 None:intergenic 10.0%
!!! ATAATTTTACAAAGAAAAAT+AGG + chr6_3:23711192-23711211 Msa0945090:intron 10.0%
!! TACAAAATAAATTTAGATTA+GGG - chr6_3:23712252-23712271 None:intergenic 10.0%
!! ATACAAAATAAATTTAGATT+AGG - chr6_3:23712253-23712272 None:intergenic 10.0%
!!! TCTTTTAATTATTTTCAATT+TGG + chr6_3:23712749-23712768 Msa0945090:CDS 10.0%
!! ATAATATCTTATGATAGAAA+AGG + chr6_3:23708391-23708410 Msa0945090:intron 15.0%
!! CTACTAAATTACTTAAAAAT+TGG - chr6_3:23708960-23708979 None:intergenic 15.0%
!!! ATTTATAGCATTTTAATTGA+AGG + chr6_3:23709296-23709315 Msa0945090:intron 15.0%
!!! TTTATAGCATTTTAATTGAA+GGG + chr6_3:23709297-23709316 Msa0945090:intron 15.0%
!! GTTAAAGACAAAATAAAAAA+TGG + chr6_3:23709391-23709410 Msa0945090:intron 15.0%
!!! AATAATTTTTGAGCTAATAA+CGG - chr6_3:23709975-23709994 None:intergenic 15.0%
!! AAATATGTTTATGTTATGAA+AGG - chr6_3:23711087-23711106 None:intergenic 15.0%
!!! ATAGTTTGAAATTTTATAGA+GGG - chr6_3:23711735-23711754 None:intergenic 15.0%
!!! TATAGTTTGAAATTTTATAG+AGG - chr6_3:23711736-23711755 None:intergenic 15.0%
!! TTTGTATAAAGAAAAAAAGT+AGG + chr6_3:23712266-23712285 Msa0945090:intron 15.0%
!! TATTGAAAAATGTAATACCT+GGG - chr6_3:23708203-23708222 None:intergenic 20.0%
!! ATATTGAAAAATGTAATACC+TGG - chr6_3:23708204-23708223 None:intergenic 20.0%
!! ATTAATCATGTTAATATAGG+AGG + chr6_3:23708289-23708308 Msa0945090:intron 20.0%
!! AATAAAATGAAAAACACACA+TGG + chr6_3:23708493-23708512 Msa0945090:intron 20.0%
!!! ATATTGTTTGTTATTGTTAG+AGG + chr6_3:23708623-23708642 Msa0945090:intron 20.0%
!! TGGTAAAATTATTGTAATGA+TGG + chr6_3:23708906-23708925 Msa0945090:intron 20.0%
!!! ATAAAACCCTTTTTTTATGT+GGG + chr6_3:23709122-23709141 Msa0945090:intron 20.0%
!! GAAAATTAAGGAATTAAAAG+AGG + chr6_3:23709413-23709432 Msa0945090:intron 20.0%
!!! TAAAAGAGGTAAGTTTTTAT+AGG + chr6_3:23709427-23709446 Msa0945090:intron 20.0%
!! AACAGTTATAAAAGTTGAAA+TGG + chr6_3:23709503-23709522 Msa0945090:intron 20.0%
!! ACAGTTATAAAAGTTGAAAT+GGG + chr6_3:23709504-23709523 Msa0945090:intron 20.0%
!!! GTTATTTTTTAAACAAGTCA+AGG + chr6_3:23709531-23709550 Msa0945090:intron 20.0%
!! TTGTAAAAAGTTGAATTGTT+TGG + chr6_3:23709622-23709641 Msa0945090:intron 20.0%
!!! AATTGTTTGGTTAAAAGTAT+CGG + chr6_3:23709635-23709654 Msa0945090:intron 20.0%
!!! TCATTTTTCAAAAGAAATAG+AGG + chr6_3:23710053-23710072 Msa0945090:intron 20.0%
!! TAGATACAAAAAGTTAAAAC+TGG - chr6_3:23710149-23710168 None:intergenic 20.0%
!!! ATGACGTTACAAATTAATTT+TGG + chr6_3:23710225-23710244 Msa0945090:intron 20.0%
!! TATAGACAATATAGAAAAAG+AGG + chr6_3:23710395-23710414 Msa0945090:intron 20.0%
!! ACAACAAAAAAGAAGATAAA+AGG + chr6_3:23710443-23710462 Msa0945090:intron 20.0%
!! ATTTAGACATCTTAAATAAG+TGG + chr6_3:23710704-23710723 Msa0945090:intron 20.0%
!! CATCTATAATCTATAACATA+TGG + chr6_3:23710820-23710839 Msa0945090:intron 20.0%
!! TTACAAAGAAAAATAGGTAT+TGG + chr6_3:23711198-23711217 Msa0945090:intron 20.0%
!! TACAAAGAAAAATAGGTATT+GGG + chr6_3:23711199-23711218 Msa0945090:intron 20.0%
!!! TAGTTTGAAATTTTATAGAG+GGG - chr6_3:23711734-23711753 None:intergenic 20.0%
!! TGACTAGATTCAATAAATTT+AGG - chr6_3:23711794-23711813 None:intergenic 20.0%
!!! TTCTTAGCTATTAAAGTATT+TGG + chr6_3:23712037-23712056 Msa0945090:intron 20.0%
!! AAAATAAATTTAGATTAGGG+AGG - chr6_3:23712249-23712268 None:intergenic 20.0%
!! TGATAATAGAATATCATAGT+TGG - chr6_3:23712784-23712803 None:intergenic 20.0%
!! ATACCAAAAAAGTTATCAAA+GGG + chr6_3:23712849-23712868 Msa0945090:three_prime_UTR 20.0%
!! ACAATTTCGAATAACCATTT+TGG + chr6_3:23707561-23707580 Msa0945090:intron 25.0%
!! TTAACAATGATTTTACACAG+TGG + chr6_3:23707727-23707746 Msa0945090:intron 25.0%
!! TAACAATGATTTTACACAGT+GGG + chr6_3:23707728-23707747 Msa0945090:intron 25.0%
!!! TTCGTCTTTTAATTTTACTG+TGG + chr6_3:23707841-23707860 Msa0945090:intron 25.0%
!! TGGATACAAATGATAATGAA+TGG + chr6_3:23708012-23708031 Msa0945090:CDS 25.0%
!! AAAGGTTACTATAGTCTTTT+TGG + chr6_3:23708409-23708428 Msa0945090:intron 25.0%
!! AGAGATACAATAAAAAGTGT+AGG - chr6_3:23708471-23708490 None:intergenic 25.0%
! CAATAAGAAGAGAGAAAAAA+AGG - chr6_3:23708691-23708710 None:intergenic 25.0%
!!! CTTTTTTTCTCTCTTCTTAT+TGG + chr6_3:23708689-23708708 Msa0945090:intron 25.0%
! ATAACAATAGAGAGAGAAAA+AGG + chr6_3:23708715-23708734 Msa0945090:intron 25.0%
! TCACAAAAATTGTTTAAGAG+TGG + chr6_3:23708783-23708802 Msa0945090:intron 25.0%
!! GTGCTAAATCTAACTTTTTA+TGG + chr6_3:23708886-23708905 Msa0945090:intron 25.0%
! AAGTAATTTAGTAGTGAATC+AGG + chr6_3:23708966-23708985 Msa0945090:intron 25.0%
! AGTAATTTAGTAGTGAATCA+GGG + chr6_3:23708967-23708986 Msa0945090:intron 25.0%
! TTCTTATATAAAGTTGAGTG+TGG + chr6_3:23709093-23709112 Msa0945090:intron 25.0%
!!! GATAAAACCCTTTTTTTATG+TGG + chr6_3:23709121-23709140 Msa0945090:intron 25.0%
!!! TAAAACCCTTTTTTTATGTG+GGG + chr6_3:23709123-23709142 Msa0945090:intron 25.0%
! AAATGTAGCTCAATTCATAA+TGG - chr6_3:23709280-23709299 None:intergenic 25.0%
!! TTTTAAACAAGTCAAGGTTT+AGG + chr6_3:23709537-23709556 Msa0945090:intron 25.0%
! TTTAAACAAGTCAAGGTTTA+GGG + chr6_3:23709538-23709557 Msa0945090:intron 25.0%
!!! TCGTTTTTCTGAAAAACTAT+AGG + chr6_3:23709819-23709838 Msa0945090:intron 25.0%
!!! TATTTTGACAAACTGAACTA+TGG + chr6_3:23709991-23710010 Msa0945090:intron 25.0%
!! TGTGTTTATTTCTCTCTAAA+GGG - chr6_3:23710082-23710101 None:intergenic 25.0%
!! TTGTGTTTATTTCTCTCTAA+AGG - chr6_3:23710083-23710102 None:intergenic 25.0%
! TTAAAAGAAATTAATGACGG+TGG + chr6_3:23710120-23710139 Msa0945090:intron 25.0%
! TAAAAGAAATTAATGACGGT+GGG + chr6_3:23710121-23710140 Msa0945090:intron 25.0%
! TGTATCTATCTCTTTCAAAA+TGG + chr6_3:23710161-23710180 Msa0945090:intron 25.0%
! TCATTTCTCAAAAGAAATAG+AGG - chr6_3:23710190-23710209 None:intergenic 25.0%
! CATATTCATTCATCAATATG+TGG + chr6_3:23710662-23710681 Msa0945090:intron 25.0%
!! TCCATTTTCCCTAAAAAATT+TGG + chr6_3:23711593-23711612 Msa0945090:intron 25.0%
!!! ACCAAATTTTTTAGGGAAAA+TGG - chr6_3:23711597-23711616 None:intergenic 25.0%
!!! ATGAGGAACCAAATTTTTTA+GGG - chr6_3:23711604-23711623 None:intergenic 25.0%
!!! AATGAGGAACCAAATTTTTT+AGG - chr6_3:23711605-23711624 None:intergenic 25.0%
! CATACAAAATCACATAAATG+AGG - chr6_3:23711621-23711640 None:intergenic 25.0%
!! AATGTAGAGATACTCTAAAA+TGG - chr6_3:23711673-23711692 None:intergenic 25.0%
!!! ATTTTAGAGTATCTCTACAT+TGG + chr6_3:23711672-23711691 Msa0945090:intron 25.0%
!!! AAAGTTCGGAATTTTTCAAT+TGG + chr6_3:23712150-23712169 Msa0945090:intron 25.0%
! ATAACAATAGCAAGACAAAA+TGG - chr6_3:23712426-23712445 None:intergenic 25.0%
! TAATAAGTGAATTATTGAGC+AGG + chr6_3:23712529-23712548 Msa0945090:intron 25.0%
! AATAAGTGAATTATTGAGCA+GGG + chr6_3:23712530-23712549 Msa0945090:intron 25.0%
!!! AATACAATTGATGATGAGTA+GGG - chr6_3:23712711-23712730 None:intergenic 25.0%
!!! AAATACAATTGATGATGAGT+AGG - chr6_3:23712712-23712731 None:intergenic 25.0%
!!! GATAACTTTTTTGGTATCAA+AGG - chr6_3:23712846-23712865 None:intergenic 25.0%
! GATACCAAAAAAGTTATCAA+AGG + chr6_3:23712848-23712867 Msa0945090:three_prime_UTR 25.0%
!!! TTTCCCTTTGATAACTTTTT+TGG - chr6_3:23712855-23712874 None:intergenic 25.0%
! ATAATAATGACTTGTGTGAG+AGG - chr6_3:23706673-23706692 None:intergenic 30.0%
ATTAAAAGAATGCAGCTCAT+AGG - chr6_3:23706732-23706751 None:intergenic 30.0%
!!! TTTTTGTTGTTAATGCATGC+AGG + chr6_3:23706923-23706942 Msa0945090:intron 30.0%
!!! TCAATGTGTCATTTTCTAGA+AGG + chr6_3:23706950-23706969 Msa0945090:CDS 30.0%
!!! CAATGTGTCATTTTCTAGAA+GGG + chr6_3:23706951-23706970 Msa0945090:CDS 30.0%
AATTGAAGATGAGTTCATGA+CGG - chr6_3:23707254-23707273 None:intergenic 30.0%
! TTATCACGTTTGAGATGTAT+TGG - chr6_3:23707341-23707360 None:intergenic 30.0%
GGTTTAATCGATGCTATAAT+GGG + chr6_3:23707525-23707544 Msa0945090:intron 30.0%
GTTTAATCGATGCTATAATG+GGG + chr6_3:23707526-23707545 Msa0945090:intron 30.0%
! ATTCGAAATTGTTATTGCAG+TGG - chr6_3:23707553-23707572 None:intergenic 30.0%
ACAATAGCGTTTAATCACTT+TGG + chr6_3:23707651-23707670 Msa0945090:intron 30.0%
TAATCCTACTATTAACAGTC+AGG + chr6_3:23707776-23707795 Msa0945090:CDS 30.0%
AATCCTACTATTAACAGTCA+GGG + chr6_3:23707777-23707796 Msa0945090:CDS 30.0%
GCATTTCCAAAAAGCAAAAA+GGG - chr6_3:23707869-23707888 None:intergenic 30.0%
TGCATTTCCAAAAAGCAAAA+AGG - chr6_3:23707870-23707889 None:intergenic 30.0%
! CTTTCTTTGACTCATGTTTT+TGG + chr6_3:23707898-23707917 Msa0945090:intron 30.0%
!! ATGCTAATGATGGAATTTTC+AGG + chr6_3:23707977-23707996 Msa0945090:intron 30.0%
! ACAAATGATAATGAATGGAG+TGG + chr6_3:23708017-23708036 Msa0945090:CDS 30.0%
TGTTCAAAAAAGTAAGGTGA+TGG - chr6_3:23708235-23708254 None:intergenic 30.0%
AAGACGTGTTCAAAAAAGTA+AGG - chr6_3:23708241-23708260 None:intergenic 30.0%
CACGTCTTGCATTATTTAAT+TGG + chr6_3:23708253-23708272 Msa0945090:intron 30.0%
AATCATGTTAATATAGGAGG+AGG + chr6_3:23708292-23708311 Msa0945090:intron 30.0%
! ACATTACCTGTCTTATTAAC+TGG + chr6_3:23708336-23708355 Msa0945090:intron 30.0%
CTTATTAACTGGCATTAGAA+AGG + chr6_3:23708347-23708366 Msa0945090:intron 30.0%
! AATAAAAAGTGTAGGACACT+AGG - chr6_3:23708463-23708482 None:intergenic 30.0%
TATAGTACTCTACTGTGAAA+AGG + chr6_3:23708592-23708611 Msa0945090:intron 30.0%
! TGTAATGATGGTGTAAAACA+AGG + chr6_3:23708918-23708937 Msa0945090:intron 30.0%
TGTAAAACAAGGTTGGAAAT+TGG + chr6_3:23708929-23708948 Msa0945090:intron 30.0%
GTAATTTAGTAGTGAATCAG+GGG + chr6_3:23708968-23708987 Msa0945090:intron 30.0%
CGAATGCTAACAAAAAAAAG+TGG - chr6_3:23709068-23709087 None:intergenic 30.0%
! AGTTTTCACCTTTCAAAATC+AGG - chr6_3:23709154-23709173 None:intergenic 30.0%
TCCTTCAATTTCAATCCTAA+AGG - chr6_3:23709358-23709377 None:intergenic 30.0%
AATGAGTGATGTAAGAACAT+TGG - chr6_3:23709479-23709498 None:intergenic 30.0%
ATGCTTAATGTGAGAAAGAA+TGG + chr6_3:23709567-23709586 Msa0945090:intron 30.0%
!! CAAAAAAGGAGTGCTATATT+GGG + chr6_3:23709590-23709609 Msa0945090:intron 30.0%
ATACATGATAAGCTAGATAC+TGG + chr6_3:23709658-23709677 Msa0945090:intron 30.0%
! TCAACTAGCTTATCAGTTAT+TGG - chr6_3:23709701-23709720 None:intergenic 30.0%
CTAAGATCTGTTTATAAGTG+TGG + chr6_3:23710015-23710034 Msa0945090:intron 30.0%
AATTTGTAACGTCATGAGTT+AGG - chr6_3:23710220-23710239 None:intergenic 30.0%
AGGAATTAGAAGAGATATAG+AGG + chr6_3:23710415-23710434 Msa0945090:intron 30.0%
CAACATGTACAGTATAGAAT+TGG - chr6_3:23710556-23710575 None:intergenic 30.0%
CAATTCTATACTGTACATGT+TGG + chr6_3:23710554-23710573 Msa0945090:intron 30.0%
!!! TGCATTTTTTGTATCACGAT+GGG - chr6_3:23710631-23710650 None:intergenic 30.0%
TGAAAAAACCCAATTGAATG+CGG + chr6_3:23710756-23710775 Msa0945090:intron 30.0%
GCTATAGTCAATAAATCTGT+TGG - chr6_3:23710801-23710820 None:intergenic 30.0%
! GATTTGGACTTTTCTAACTT+TGG - chr6_3:23710869-23710888 None:intergenic 30.0%
AGTTAGAAAAGTCCAAATCT+TGG + chr6_3:23710870-23710889 Msa0945090:intron 30.0%
! TGCTGGAAAGCATATAAAAA+GGG - chr6_3:23711051-23711070 None:intergenic 30.0%
! TTGCTGGAAAGCATATAAAA+AGG - chr6_3:23711052-23711071 None:intergenic 30.0%
AACACAACTCAATCAGAAAT+GGG - chr6_3:23711133-23711152 None:intergenic 30.0%
TAACACAACTCAATCAGAAA+TGG - chr6_3:23711134-23711153 None:intergenic 30.0%
! CTATTTGACTGACAACTTTT+CGG + chr6_3:23711163-23711182 Msa0945090:intron 30.0%
TATTGGATCAGAATTTGGAA+AGG + chr6_3:23711345-23711364 Msa0945090:intron 30.0%
ATTGGATCAGAATTTGGAAA+GGG + chr6_3:23711346-23711365 Msa0945090:intron 30.0%
ATTAATTCTCTAGTACCTAC+TGG + chr6_3:23711550-23711569 Msa0945090:intron 30.0%
GGTATGAGTCAAAACATAAA+TGG - chr6_3:23711861-23711880 None:intergenic 30.0%
!!! TTTATGTTTTGACTCATACC+AGG + chr6_3:23711861-23711880 Msa0945090:intron 30.0%
CTATCAATAGCAACGTTAAT+TGG - chr6_3:23712000-23712019 None:intergenic 30.0%
!! TTCGGAATTTTTCAATTGGT+TGG + chr6_3:23712154-23712173 Msa0945090:intron 30.0%
!! AAAGTACCTTCCTTTTTGTT+TGG - chr6_3:23712500-23712519 None:intergenic 30.0%
!! GATAATGGAGATATATATCC+CGG + chr6_3:23712552-23712571 Msa0945090:CDS 30.0%
! ATAATGGAGATATATATCCC+GGG + chr6_3:23712553-23712572 Msa0945090:CDS 30.0%
!! TTCTTTGGGATGATATTCAA+AGG + chr6_3:23712657-23712676 Msa0945090:CDS 30.0%
TACTATGATGATCTCACAAT+TGG + chr6_3:23712805-23712824 Msa0945090:exon 30.0%
ACTATGATGATCTCACAATT+GGG + chr6_3:23712806-23712825 Msa0945090:exon 30.0%
!! GAATTTTTGGGAATTGGGTT+GGG - chr6_3:23706482-23706501 None:intergenic 35.0%
!! AGCTGGAATTTTTGGGAATT+GGG - chr6_3:23706487-23706506 None:intergenic 35.0%
!! AAGCTGGAATTTTTGGGAAT+TGG - chr6_3:23706488-23706507 None:intergenic 35.0%
! CTTAGGAAGCTGGAATTTTT+GGG - chr6_3:23706494-23706513 None:intergenic 35.0%
! ACTTAGGAAGCTGGAATTTT+TGG - chr6_3:23706495-23706514 None:intergenic 35.0%
TCTTCAATGCACAACAACTT+AGG - chr6_3:23706511-23706530 None:intergenic 35.0%
TAAGTTGTTGTGCATTGAAG+AGG + chr6_3:23706510-23706529 Msa0945090:five_prime_UTR 35.0%
!!! TGAGGGGTTTTGTTTTGTTT+TGG - chr6_3:23706588-23706607 None:intergenic 35.0%
TAAGCAAGTTAAGGAAGAAG+GGG - chr6_3:23706612-23706631 None:intergenic 35.0%
GTAAGCAAGTTAAGGAAGAA+GGG - chr6_3:23706613-23706632 None:intergenic 35.0%
AGTAAGCAAGTTAAGGAAGA+AGG - chr6_3:23706614-23706633 None:intergenic 35.0%
ATGGGTAAGTAAGCAAGTTA+AGG - chr6_3:23706621-23706640 None:intergenic 35.0%
! TTGTTGGGGGTATAGTATAT+GGG - chr6_3:23706639-23706658 None:intergenic 35.0%
GAGGTTTATTGTCATTGAAG+AGG - chr6_3:23707232-23707251 None:intergenic 35.0%
AATTCTTACAAAACCGTCGA+CGG + chr6_3:23707270-23707289 Msa0945090:CDS 35.0%
AGTGATGAACATGGATATTG+TGG - chr6_3:23707365-23707384 None:intergenic 35.0%
TGCAATAAGATAACGAGCAA+TGG - chr6_3:23707500-23707519 None:intergenic 35.0%
!! TATAGCATCGATTAAACCGT+CGG - chr6_3:23707523-23707542 None:intergenic 35.0%
CGGTTTAATCGATGCTATAA+TGG + chr6_3:23707524-23707543 Msa0945090:intron 35.0%
! CACGATGAAGTTATGCTTTT+AGG + chr6_3:23707588-23707607 Msa0945090:intron 35.0%
ATATAACCAAGTCTACAACG+TGG - chr6_3:23707699-23707718 None:intergenic 35.0%
TTACCCTGACTGTTAATAGT+AGG - chr6_3:23707783-23707802 None:intergenic 35.0%
AACCTCTTTAGCATTTGGAT+CGG - chr6_3:23707823-23707842 None:intergenic 35.0%
TGAGATGCTAATGCTAATGA+TGG + chr6_3:23707967-23707986 Msa0945090:intron 35.0%
! ATGATAATGAATGGAGTGGT+TGG + chr6_3:23708021-23708040 Msa0945090:CDS 35.0%
GAAGGGGATATAATGGTAAA+TGG + chr6_3:23708056-23708075 Msa0945090:CDS 35.0%
GTTAATATAGGAGGAGGAAT+AGG + chr6_3:23708298-23708317 Msa0945090:intron 35.0%
CTAATGCCAGTTAATAAGAC+AGG - chr6_3:23708345-23708364 None:intergenic 35.0%
AAGTTTAGGAAACAGCAAGA+CGG - chr6_3:23708860-23708879 None:intergenic 35.0%
!! TCTTGCTGTTTCCTAAACTT+GGG + chr6_3:23708860-23708879 Msa0945090:intron 35.0%
TTTAGCACTAACCCAAGTTT+AGG - chr6_3:23708874-23708893 None:intergenic 35.0%
! ATGATGGTGTAAAACAAGGT+TGG + chr6_3:23708922-23708941 Msa0945090:intron 35.0%
AACAAAAAAAAGTGGCCGTT+GGG - chr6_3:23709060-23709079 None:intergenic 35.0%
TAACAAAAAAAAGTGGCCGT+TGG - chr6_3:23709061-23709080 None:intergenic 35.0%
TCACTCCCCACATAAAAAAA+GGG - chr6_3:23709131-23709150 None:intergenic 35.0%
TTCCAACAACACTATCCAAA+GGG - chr6_3:23709188-23709207 None:intergenic 35.0%
TCCTAACCATTTGCTTTATG+GGG - chr6_3:23709239-23709258 None:intergenic 35.0%
CTCCTAACCATTTGCTTTAT+GGG - chr6_3:23709240-23709259 None:intergenic 35.0%
!! TCTTAGCAGTTTTAGCCTTT+AGG + chr6_3:23709340-23709359 Msa0945090:intron 35.0%
!! GCCTTTAGGATTGAAATTGA+AGG + chr6_3:23709354-23709373 Msa0945090:intron 35.0%
! TGTAAGAACATTGGTTACAG+AGG - chr6_3:23709470-23709489 None:intergenic 35.0%
GTGAGAAAGAATGGCAAAAA+AGG + chr6_3:23709576-23709595 Msa0945090:intron 35.0%
!! GCAAAAAAGGAGTGCTATAT+TGG + chr6_3:23709589-23709608 Msa0945090:intron 35.0%
TGATATACGATAGCTGATAG+TGG + chr6_3:23709718-23709737 Msa0945090:intron 35.0%
!! GATAGTGGATGAACGTATAA+TGG + chr6_3:23709733-23709752 Msa0945090:intron 35.0%
TTGTTTAGACATGAGTGTGT+AGG + chr6_3:23710316-23710335 Msa0945090:intron 35.0%
TGTTTAGACATGAGTGTGTA+GGG + chr6_3:23710317-23710336 Msa0945090:intron 35.0%
TGAGTGTGTAGGGATAAATT+AGG + chr6_3:23710327-23710346 Msa0945090:intron 35.0%
TAGGGATAAATTAGGAGACA+TGG + chr6_3:23710335-23710354 Msa0945090:intron 35.0%
AGATAAATCAGGAGAGAGAA+TGG + chr6_3:23710481-23710500 Msa0945090:intron 35.0%
! ATGGAGGAAAGATTTTCTCT+CGG + chr6_3:23710500-23710519 Msa0945090:intron 35.0%
CGCTAACTTTGATGAAATCA+CGG + chr6_3:23710582-23710601 Msa0945090:intron 35.0%
!!! GTGCATTTTTTGTATCACGA+TGG - chr6_3:23710632-23710651 None:intergenic 35.0%
ATAAATCTGTTGGATACACG+AGG - chr6_3:23710791-23710810 None:intergenic 35.0%
AGAAAGCTCATTCCAAGATT+TGG - chr6_3:23710885-23710904 None:intergenic 35.0%
AGATCTGAATGTGTGTAAAC+AGG + chr6_3:23710911-23710930 Msa0945090:intron 35.0%
GATCTGAATGTGTGTAAACA+GGG + chr6_3:23710912-23710931 Msa0945090:intron 35.0%
TAGAAAAAGACTACGTTTCC+AGG + chr6_3:23710947-23710966 Msa0945090:intron 35.0%
AGAAAAAGACTACGTTTCCA+GGG + chr6_3:23710948-23710967 Msa0945090:intron 35.0%
AAACATCTGATCTGACGTAA+GGG - chr6_3:23710992-23711011 None:intergenic 35.0%
AAAACATCTGATCTGACGTA+AGG - chr6_3:23710993-23711012 None:intergenic 35.0%
! TTACGTCAGATCAGATGTTT+TGG + chr6_3:23710992-23711011 Msa0945090:intron 35.0%
ATTCTGATCCAATAGCAACT+TGG - chr6_3:23711339-23711358 None:intergenic 35.0%
! GTTGCTATTGGATCAGAATT+TGG + chr6_3:23711340-23711359 Msa0945090:intron 35.0%
GGGACATTATTGGATCATAA+TGG + chr6_3:23711481-23711500 Msa0945090:intron 35.0%
AAAATGGACACCACTCAATA+GGG - chr6_3:23711657-23711676 None:intergenic 35.0%
TAAAATGGACACCACTCAAT+AGG - chr6_3:23711658-23711677 None:intergenic 35.0%
TAGCAACGTTAATTGGTTGA+GGG - chr6_3:23711993-23712012 None:intergenic 35.0%
ATAGCAACGTTAATTGGTTG+AGG - chr6_3:23711994-23712013 None:intergenic 35.0%
!!! TCAATTTTAGCTGACACAGA+TGG + chr6_3:23712092-23712111 Msa0945090:intron 35.0%
ACTTCAATGAAGACTTGCAA+TGG - chr6_3:23712193-23712212 None:intergenic 35.0%
CAAGTCTTCATTGAAGTTGA+TGG + chr6_3:23712196-23712215 Msa0945090:intron 35.0%
TTCTTTCTGATCTTGCACAA+GGG + chr6_3:23712219-23712238 Msa0945090:intron 35.0%
ACAATAGCAAGACAAAATGG+TGG - chr6_3:23712423-23712442 None:intergenic 35.0%
!! CCTTTTTGTTTGGTAGACAT+GGG - chr6_3:23712490-23712509 None:intergenic 35.0%
!! TCCTTTTTGTTTGGTAGACA+TGG - chr6_3:23712491-23712510 None:intergenic 35.0%
TGTCTACCAAACAAAAAGGA+AGG + chr6_3:23712491-23712510 Msa0945090:intron 35.0%
GAATTATTGAGCAGGGATAA+TGG + chr6_3:23712537-23712556 Msa0945090:intron 35.0%
CTATGATGATCTCACAATTG+GGG + chr6_3:23712807-23712826 Msa0945090:exon 35.0%
!! GGAATTTTTGGGAATTGGGT+TGG - chr6_3:23706483-23706502 None:intergenic 40.0%
! GTTGTTGGGGGTATAGTATA+TGG - chr6_3:23706640-23706659 None:intergenic 40.0%
!! AGGTGTTGTTGTTGTTGTTG+GGG - chr6_3:23706653-23706672 None:intergenic 40.0%
!! GAGGTGTTGTTGTTGTTGTT+GGG - chr6_3:23706654-23706673 None:intergenic 40.0%
!! AGAGGTGTTGTTGTTGTTGT+TGG - chr6_3:23706655-23706674 None:intergenic 40.0%
! GAGATAAGAAAGAGCACAAG+AGG - chr6_3:23706758-23706777 None:intergenic 40.0%
GACCAAGGCAATTGTTTAAC+CGG + chr6_3:23706988-23707007 Msa0945090:CDS 40.0%
TTCCGGTTAAACAATTGCCT+TGG - chr6_3:23706993-23707012 None:intergenic 40.0%
CAATTGTTTAACCGGAAACC+CGG + chr6_3:23706996-23707015 Msa0945090:CDS 40.0%
!! AAATTAGCGGATTGCGGAAT+TGG + chr6_3:23707066-23707085 Msa0945090:CDS 40.0%
CGTATGTTAGTATTCCCTGA+GGG - chr6_3:23707393-23707412 None:intergenic 40.0%
! TGTAGGATTCAGAGGCATAT+CGG + chr6_3:23707428-23707447 Msa0945090:intron 40.0%
!! GGTGACGGAATATCAATCTT+CGG + chr6_3:23707453-23707472 Msa0945090:intron 40.0%
TCGTTATCTTATTGCACCGA+CGG + chr6_3:23707504-23707523 Msa0945090:intron 40.0%
CTTCATCGTGATGACCAAAA+TGG - chr6_3:23707578-23707597 None:intergenic 40.0%
GATAAATACAGTCCAGACAG+AGG + chr6_3:23707618-23707637 Msa0945090:intron 40.0%
GCGTTTAATCACTTTGGTGA+AGG + chr6_3:23707657-23707676 Msa0945090:intron 40.0%
CAGTGGGAAATGTATGCTAT+CGG + chr6_3:23707744-23707763 Msa0945090:intron 40.0%
TCTTTAGCATTTGGATCGGA+AGG - chr6_3:23707819-23707838 None:intergenic 40.0%
TTCCGATCCAAATGCTAAAG+AGG + chr6_3:23707818-23707837 Msa0945090:CDS 40.0%
AGACGAACCTCTTTAGCATT+TGG - chr6_3:23707828-23707847 None:intergenic 40.0%
!! GTGGTACCCTTTTTGCTTTT+TGG + chr6_3:23707860-23707879 Msa0945090:intron 40.0%
CTATGCTATTGTACTCGCAA+TGG + chr6_3:23707931-23707950 Msa0945090:intron 40.0%
ATGAATGGAGTGGTTGGAAT+TGG + chr6_3:23708027-23708046 Msa0945090:CDS 40.0%
!!! TTAATTTGCTCCGCGGATTT+TGG - chr6_3:23708146-23708165 None:intergenic 40.0%
ACCATGTACTCTGGTGTATT+CGG + chr6_3:23708173-23708192 Msa0945090:CDS 40.0%
ACAGGTAATGTCCGTTGTTA+GGG - chr6_3:23708327-23708346 None:intergenic 40.0%
! ACATGGTGATGTTCAGTTGA+GGG + chr6_3:23708510-23708529 Msa0945090:intron 40.0%
! ACTCTACTGTGAAAAGGTGT+AGG + chr6_3:23708598-23708617 Msa0945090:intron 40.0%
! CTCTACTGTGAAAAGGTGTA+GGG + chr6_3:23708599-23708618 Msa0945090:intron 40.0%
!! GTCTTGCTGTTTCCTAAACT+TGG + chr6_3:23708859-23708878 Msa0945090:intron 40.0%
GTCACTCCCCACATAAAAAA+AGG - chr6_3:23709132-23709151 None:intergenic 40.0%
AACTTCGTTTAGATCCCCTT+TGG + chr6_3:23709170-23709189 Msa0945090:intron 40.0%
TCCAACAACACTATCCAAAG+GGG - chr6_3:23709187-23709206 None:intergenic 40.0%
CTTCCAACAACACTATCCAA+AGG - chr6_3:23709189-23709208 None:intergenic 40.0%
TTCATGCCCCATAAAGCAAA+TGG + chr6_3:23709230-23709249 Msa0945090:intron 40.0%
CCTCCTAACCATTTGCTTTA+TGG - chr6_3:23709241-23709260 None:intergenic 40.0%
CCATAAAGCAAATGGTTAGG+AGG + chr6_3:23709238-23709257 Msa0945090:intron 40.0%
!! AAAAGGAGTGCTATATTGGG+TGG + chr6_3:23709593-23709612 Msa0945090:intron 40.0%
!! AAAGGAGTGCTATATTGGGT+GGG + chr6_3:23709594-23709613 Msa0945090:intron 40.0%
CATGATAAGCTAGATACTGG+CGG + chr6_3:23709661-23709680 Msa0945090:intron 40.0%
AAAGAAGAGATGCATGTGTG+CGG + chr6_3:23710280-23710299 Msa0945090:intron 40.0%
! CATGTGTGCGGATTGTTATT+TGG + chr6_3:23710292-23710311 Msa0945090:intron 40.0%
GGATAAATTAGGAGACATGG+AGG + chr6_3:23710338-23710357 Msa0945090:intron 40.0%
TAAATCAGGAGAGAGAATGG+AGG + chr6_3:23710484-23710503 Msa0945090:intron 40.0%
! CGATGGGTTTGTCAAAATCA+TGG - chr6_3:23710615-23710634 None:intergenic 40.0%
AAAACCCAATTGAATGCGGA+TGG + chr6_3:23710760-23710779 Msa0945090:intron 40.0%
!! GTCAGATCAGATGTTTTGGA+GGG + chr6_3:23710996-23711015 Msa0945090:intron 40.0%
!!! AGATGTTTTGGAGGGTGTTA+TGG + chr6_3:23711004-23711023 Msa0945090:intron 40.0%
!!! GATGTTTTGGAGGGTGTTAT+GGG + chr6_3:23711005-23711024 Msa0945090:intron 40.0%
AATGGGTCCAAGAGGAAAAA+GGG - chr6_3:23711116-23711135 None:intergenic 40.0%
AAATGGGTCCAAGAGGAAAA+AGG - chr6_3:23711117-23711136 None:intergenic 40.0%
! TTACTTTCTCCCTGTTGCTT+TGG - chr6_3:23711232-23711251 None:intergenic 40.0%
AGTGTGAGCAAGTAACAAAG+GGG - chr6_3:23711375-23711394 None:intergenic 40.0%
CAGTGTGAGCAAGTAACAAA+GGG - chr6_3:23711376-23711395 None:intergenic 40.0%
ACAGTGTGAGCAAGTAACAA+AGG - chr6_3:23711377-23711396 None:intergenic 40.0%
GAAGTTTCAACCCTATTGAG+TGG + chr6_3:23711644-23711663 Msa0945090:intron 40.0%
! TATCTCTACATTGGCTGCAA+AGG + chr6_3:23711681-23711700 Msa0945090:intron 40.0%
! ACCAGGTTTTGCATGCTAAA+AGG + chr6_3:23711878-23711897 Msa0945090:intron 40.0%
!! TTTTAGCTGACACAGATGGT+TGG + chr6_3:23712096-23712115 Msa0945090:intron 40.0%
GTTCTTTCTGATCTTGCACA+AGG + chr6_3:23712218-23712237 Msa0945090:intron 40.0%
!! ACGATGCTTCGATGTTTTGA+AGG + chr6_3:23712307-23712326 Msa0945090:intron 40.0%
!! CGATGCTTCGATGTTTTGAA+GGG + chr6_3:23712308-23712327 Msa0945090:intron 40.0%
GGACAATTGCTTCAAATCGA+AGG - chr6_3:23712402-23712421 None:intergenic 40.0%
CCCATGTCTACCAAACAAAA+AGG + chr6_3:23712487-23712506 Msa0945090:intron 40.0%
GATATATATCCCGGGTTCAA+CGG + chr6_3:23712561-23712580 Msa0945090:CDS 40.0%
TGCACAACAACTTAGGAAGC+TGG - chr6_3:23706504-23706523 None:intergenic 45.0%
TTAAGGAAGAAGGGGTTGAG+GGG - chr6_3:23706604-23706623 None:intergenic 45.0%
GTTAAGGAAGAAGGGGTTGA+GGG - chr6_3:23706605-23706624 None:intergenic 45.0%
AGTTAAGGAAGAAGGGGTTG+AGG - chr6_3:23706606-23706625 None:intergenic 45.0%
!! GGTGTTGTTGTTGTTGTTGG+GGG - chr6_3:23706652-23706671 None:intergenic 45.0%
TTCAGGGTAAGGATGTTGGT+GGG - chr6_3:23706811-23706830 None:intergenic 45.0%
GAACTGCTCTCAAAAGACCA+AGG + chr6_3:23706973-23706992 Msa0945090:CDS 45.0%
CGCTAATTTCTGACGGTTTG+CGG - chr6_3:23707055-23707074 None:intergenic 45.0%
CGCAAACCGTCAGAAATTAG+CGG + chr6_3:23707053-23707072 Msa0945090:CDS 45.0%
CGCAATCCGCTAATTTCTGA+CGG - chr6_3:23707062-23707081 None:intergenic 45.0%
!! CGTCAGAAATTAGCGGATTG+CGG + chr6_3:23707060-23707079 Msa0945090:CDS 45.0%
! TTCCTGGAACTGGATTTGCT+GGG - chr6_3:23707161-23707180 None:intergenic 45.0%
GAGTGGTTCGTCTTGAATCA+CGG - chr6_3:23707196-23707215 None:intergenic 45.0%
TGATTCAAGACGAACCACTC+TGG + chr6_3:23707196-23707215 Msa0945090:CDS 45.0%
GAGGAGAAGATTATCCAGAG+TGG - chr6_3:23707213-23707232 None:intergenic 45.0%
TGAAGATGAGTTCATGACGG+AGG - chr6_3:23707251-23707270 None:intergenic 45.0%
TGATTTGAACATTTGCGCCG+CGG - chr6_3:23707296-23707315 None:intergenic 45.0%
GGCGCAAATGTTCAAATCAC+CGG + chr6_3:23707297-23707316 Msa0945090:CDS 45.0%
AATGTTCAAATCACCGGCCA+CGG + chr6_3:23707303-23707322 Msa0945090:CDS 45.0%
AGGGTCTACAGTGATGAACA+TGG - chr6_3:23707374-23707393 None:intergenic 45.0%
TTCATCACTGTAGACCCTCA+GGG + chr6_3:23707376-23707395 Msa0945090:intron 45.0%
GCGTATGTTAGTATTCCCTG+AGG - chr6_3:23707394-23707413 None:intergenic 45.0%
TCTTCGGTTCACGTAACATC+TGG + chr6_3:23707469-23707488 Msa0945090:intron 45.0%
GTTACTTGCATTCCTCTGTC+TGG - chr6_3:23707633-23707652 None:intergenic 45.0%
AGAATGCCACGTTGTAGACT+TGG + chr6_3:23707690-23707709 Msa0945090:intron 45.0%
TGGGAAATGTATGCTATCGG+AGG + chr6_3:23707747-23707766 Msa0945090:CDS 45.0%
TGCTATTGTACTCGCAATGG+TGG + chr6_3:23707934-23707953 Msa0945090:intron 45.0%
AATGGAGTGGTTGGAATTGG+AGG + chr6_3:23708030-23708049 Msa0945090:CDS 45.0%
GAGCATTCTTTGTACCGTCA+GGG + chr6_3:23708078-23708097 Msa0945090:CDS 45.0%
AGCATTCTTTGTACCGTCAG+GGG + chr6_3:23708079-23708098 Msa0945090:CDS 45.0%
AAGTGTACAGCCAAAATCCG+CGG + chr6_3:23708133-23708152 Msa0945090:CDS 45.0%
!! AAGCTGGTTAATTTGCTCCG+CGG - chr6_3:23708153-23708172 None:intergenic 45.0%
AACCAGCTTACCATGTACTC+TGG + chr6_3:23708164-23708183 Msa0945090:CDS 45.0%
ACCGAATACACCAGAGTACA+TGG - chr6_3:23708177-23708196 None:intergenic 45.0%
GGAATAGGATGCCCTAACAA+CGG + chr6_3:23708313-23708332 Msa0945090:intron 45.0%
GACAGGTAATGTCCGTTGTT+AGG - chr6_3:23708328-23708347 None:intergenic 45.0%
! CACATGGTGATGTTCAGTTG+AGG + chr6_3:23708509-23708528 Msa0945090:intron 45.0%
AGTAGTGAATCAGGGGAAAG+TGG + chr6_3:23708975-23708994 Msa0945090:intron 45.0%
GTAGTGAATCAGGGGAAAGT+GGG + chr6_3:23708976-23708995 Msa0945090:intron 45.0%
TGCTTATGCACGTGATTGTG+AGG + chr6_3:23709010-23709029 Msa0945090:intron 45.0%
CACGTGATTGTGAGGTCATT+GGG + chr6_3:23709018-23709037 Msa0945090:intron 45.0%
! CATTGGGAATCTCTAGCTCA+TGG + chr6_3:23709034-23709053 Msa0945090:intron 45.0%
! GGGAGTGACCTGATTTTGAA+AGG + chr6_3:23709143-23709162 Msa0945090:intron 45.0%
TCCCCTTTGGATAGTGTTGT+TGG + chr6_3:23709183-23709202 Msa0945090:intron 45.0%
GCCCCATAAAGCAAATGGTT+AGG + chr6_3:23709235-23709254 Msa0945090:intron 45.0%
! AACAAGTCAAGGTTTAGGGC+TGG + chr6_3:23709542-23709561 Msa0945090:intron 45.0%
!! AAGGAGTGCTATATTGGGTG+GGG + chr6_3:23709595-23709614 Msa0945090:intron 45.0%
AATTAGGAGACATGGAGGTC+TGG + chr6_3:23710343-23710362 Msa0945090:intron 45.0%
ATTAGGAGACATGGAGGTCT+GGG + chr6_3:23710344-23710363 Msa0945090:intron 45.0%
AGGTCCATCCGCATTCAATT+GGG - chr6_3:23710767-23710786 None:intergenic 45.0%
TAGGTCCATCCGCATTCAAT+TGG - chr6_3:23710768-23710787 None:intergenic 45.0%
ATCTGTTGGATACACGAGGT+AGG - chr6_3:23710787-23710806 None:intergenic 45.0%
!! CGTCAGATCAGATGTTTTGG+AGG + chr6_3:23710995-23711014 Msa0945090:intron 45.0%
! TTGAGCACCCTTTTTCCTCT+TGG + chr6_3:23711106-23711125 Msa0945090:intron 45.0%
CAATCAGAAATGGGTCCAAG+AGG - chr6_3:23711124-23711143 None:intergenic 45.0%
GGACGAAAACCAAAGCAACA+GGG + chr6_3:23711220-23711239 Msa0945090:intron 45.0%
!! GTGAGCTGTGTGACTAGTTT+GGG - chr6_3:23711317-23711336 None:intergenic 45.0%
ACAGCTCACCAAGTTGCTAT+TGG + chr6_3:23711328-23711347 Msa0945090:intron 45.0%
CCTAGAGAATAGCGGTTACT+TGG - chr6_3:23711458-23711477 None:intergenic 45.0%
CCAAGTAACCGCTATTCTCT+AGG + chr6_3:23711455-23711474 Msa0945090:intron 45.0%
!! TAACCGCTATTCTCTAGGAC+TGG + chr6_3:23711460-23711479 Msa0945090:intron 45.0%
!! AACCGCTATTCTCTAGGACT+GGG + chr6_3:23711461-23711480 Msa0945090:intron 45.0%
!! CTCTAGGACTGGGACATTAT+TGG + chr6_3:23711471-23711490 Msa0945090:intron 45.0%
! GCCTTTTAGCATGCAAAACC+TGG - chr6_3:23711882-23711901 None:intergenic 45.0%
CGAGAGTAGGAAAAAGTGAG+TGG - chr6_3:23711927-23711946 None:intergenic 45.0%
GTGTGTATAACGACGAGAGT+AGG - chr6_3:23711940-23711959 None:intergenic 45.0%
CTCTCGTCGTTATACACACA+CGG + chr6_3:23711941-23711960 Msa0945090:intron 45.0%
CCAACAGCAAGGGTTACAAT+GGG + chr6_3:23712604-23712623 Msa0945090:CDS 45.0%
AGCAAGGGTTACAATGGGAA+TGG + chr6_3:23712609-23712628 Msa0945090:CDS 45.0%
GCAAGGGTTACAATGGGAAT+GGG + chr6_3:23712610-23712629 Msa0945090:CDS 45.0%
CAAGGGTTACAATGGGAATG+GGG + chr6_3:23712611-23712630 Msa0945090:CDS 45.0%
AAGGGTTACAATGGGAATGG+GGG + chr6_3:23712612-23712631 Msa0945090:CDS 45.0%
AATGACGATGGGGACTTCTT+TGG + chr6_3:23712642-23712661 Msa0945090:CDS 45.0%
ATGACGATGGGGACTTCTTT+GGG + chr6_3:23712643-23712662 Msa0945090:CDS 45.0%
TGATGATCTCACAATTGGGG+TGG + chr6_3:23712810-23712829 Msa0945090:exon 45.0%
GATGATCTCACAATTGGGGT+GGG + chr6_3:23712811-23712830 Msa0945090:exon 45.0%
! GTAAGGATGTTGGTGGGGTA+AGG - chr6_3:23706805-23706824 None:intergenic 50.0%
TCAGGGTAAGGATGTTGGTG+GGG - chr6_3:23706810-23706829 None:intergenic 50.0%
CTTCAGGGTAAGGATGTTGG+TGG - chr6_3:23706812-23706831 None:intergenic 50.0%
CAGCTTCAGGGTAAGGATGT+TGG - chr6_3:23706815-23706834 None:intergenic 50.0%
ACATCCTTACCCTGAAGCTG+TGG + chr6_3:23706815-23706834 Msa0945090:CDS 50.0%
TGAACCACAGCTTCAGGGTA+AGG - chr6_3:23706822-23706841 None:intergenic 50.0%
GTTCGTGAACCACAGCTTCA+GGG - chr6_3:23706827-23706846 None:intergenic 50.0%
AGTTCGTGAACCACAGCTTC+AGG - chr6_3:23706828-23706847 None:intergenic 50.0%
!! GCGGATTGCGGAATTGGTTT+TGG + chr6_3:23707072-23707091 Msa0945090:CDS 50.0%
!! TGGATTTGCTGGGTCGTTGT+CGG - chr6_3:23707151-23707170 None:intergenic 50.0%
GTTCCTGGAACTGGATTTGC+TGG - chr6_3:23707162-23707181 None:intergenic 50.0%
ATTGGAGTGTGATGCAACCG+TGG - chr6_3:23707323-23707342 None:intergenic 50.0%
GTTCATCACTGTAGACCCTC+AGG + chr6_3:23707375-23707394 Msa0945090:intron 50.0%
CCTCTGAATCCTACATGCGT+TGG - chr6_3:23707423-23707442 None:intergenic 50.0%
CCAACGCATGTAGGATTCAG+AGG + chr6_3:23707420-23707439 Msa0945090:intron 50.0%
! GGATTCAGAGGCATATCGGA+CGG + chr6_3:23707432-23707451 Msa0945090:intron 50.0%
GATCGGAAGGAGCTGTGTAA+CGG - chr6_3:23707806-23707825 None:intergenic 50.0%
!!! TTTTCAGGTGACAAAGCGCG+TGG + chr6_3:23707992-23708011 Msa0945090:intron 50.0%
GAGTGGTTGGAATTGGAGGA+CGG + chr6_3:23708034-23708053 Msa0945090:CDS 50.0%
GTTGGAATTGGAGGACGGAA+GGG + chr6_3:23708039-23708058 Msa0945090:CDS 50.0%
TTGGAATTGGAGGACGGAAG+GGG + chr6_3:23708040-23708059 Msa0945090:CDS 50.0%
GAGGACGGAAGGGGATATAA+TGG + chr6_3:23708049-23708068 Msa0945090:CDS 50.0%
! GGAGCATTCTTTGTACCGTC+AGG + chr6_3:23708077-23708096 Msa0945090:CDS 50.0%
ATTCTTTGTACCGTCAGGGG+TGG + chr6_3:23708082-23708101 Msa0945090:CDS 50.0%
TTCTTTGTACCGTCAGGGGT+GGG + chr6_3:23708083-23708102 Msa0945090:CDS 50.0%
CACCAGAGTACATGGTAAGC+TGG - chr6_3:23708169-23708188 None:intergenic 50.0%
GACCATGTGTGGTCAGAGAA+GGG - chr6_3:23708441-23708460 None:intergenic 50.0%
TAGGACACTAGGACCATGTG+TGG - chr6_3:23708452-23708471 None:intergenic 50.0%
TGATGTTCAGTTGAGGGACG+CGG + chr6_3:23708516-23708535 Msa0945090:intron 50.0%
GCACGTGATTGTGAGGTCAT+TGG + chr6_3:23709017-23709036 Msa0945090:intron 50.0%
! ATCTCTAGCTCATGGCCCAA+CGG + chr6_3:23709042-23709061 Msa0945090:intron 50.0%
TTAGGAGACATGGAGGTCTG+GGG + chr6_3:23710345-23710364 Msa0945090:intron 50.0%
GAGCTGAGTAGAGAGAGGAA+AGG + chr6_3:23710367-23710386 Msa0945090:intron 50.0%
GTTTCCAGGGTAGAGTGACA+AGG + chr6_3:23710961-23710980 Msa0945090:intron 50.0%
ATCTGATCTGACGTAAGGGC+AGG - chr6_3:23710988-23711007 None:intergenic 50.0%
TGCTTTCCAGCAAGTAAGCG+TGG + chr6_3:23711059-23711078 Msa0945090:intron 50.0%
GCTTTCCAGCAAGTAAGCGT+GGG + chr6_3:23711060-23711079 Msa0945090:intron 50.0%
GGGACGAAAACCAAAGCAAC+AGG + chr6_3:23711219-23711238 Msa0945090:intron 50.0%
! GGTGAGCTGTGTGACTAGTT+TGG - chr6_3:23711318-23711337 None:intergenic 50.0%
GTCCCAGTCCTAGAGAATAG+CGG - chr6_3:23711466-23711485 None:intergenic 50.0%
GTACCTACTGGTCAGTAGAG+TGG + chr6_3:23711562-23711581 Msa0945090:intron 50.0%
TCACCACTCTACTGACCAGT+AGG - chr6_3:23711568-23711587 None:intergenic 50.0%
AACTTTAACCCCAGCCACAG+CGG - chr6_3:23712136-23712155 None:intergenic 50.0%
CTGTGGCTGGGGTTAAAGTT+CGG + chr6_3:23712136-23712155 Msa0945090:intron 50.0%
ATATATCCCGGGTTCAACGG+TGG + chr6_3:23712564-23712583 Msa0945090:CDS 50.0%
GCCAACAGCAAGGGTTACAA+TGG + chr6_3:23712603-23712622 Msa0945090:CDS 50.0%
! CCCATTGTAACCCTTGCTGT+TGG - chr6_3:23712607-23712626 None:intergenic 50.0%
AGGGTTACAATGGGAATGGG+GGG + chr6_3:23712613-23712632 Msa0945090:CDS 50.0%
! GATGATGAGTAGGGTGCTAG+CGG - chr6_3:23712702-23712721 None:intergenic 50.0%
TTGGTGGGGTAAGGTGAGGT+TGG - chr6_3:23706796-23706815 None:intergenic 55.0%
! GATGTTGGTGGGGTAAGGTG+AGG - chr6_3:23706800-23706819 None:intergenic 55.0%
GCAATCGTCTACCGGGTTTC+CGG - chr6_3:23707010-23707029 None:intergenic 55.0%
GAAACCCGGTAGACGATTGC+TGG + chr6_3:23707010-23707029 Msa0945090:CDS 55.0%
ATCGCCAGCAATCGTCTACC+GGG - chr6_3:23707017-23707036 None:intergenic 55.0%
CATCGCCAGCAATCGTCTAC+CGG - chr6_3:23707018-23707037 None:intergenic 55.0%
GACGGTTTGCGGACCAGTTT+GGG - chr6_3:23707044-23707063 None:intergenic 55.0%
TGACGGTTTGCGGACCAGTT+TGG - chr6_3:23707045-23707064 None:intergenic 55.0%
ACCTCCTTTACCTCCCATGG+CGG - chr6_3:23707103-23707122 None:intergenic 55.0%
CTGACCTCCTTTACCTCCCA+TGG - chr6_3:23707106-23707125 None:intergenic 55.0%
! ATTTGCTGGGTCGTTGTCGG+AGG - chr6_3:23707148-23707167 None:intergenic 55.0%
GACCCAGCAAATCCAGTTCC+AGG + chr6_3:23707156-23707175 Msa0945090:CDS 55.0%
! TGACGGAGTGTTCCTGGAAC+TGG - chr6_3:23707171-23707190 None:intergenic 55.0%
CGTCTTGAATCACGGCGTGA+CGG - chr6_3:23707188-23707207 None:intergenic 55.0%
! AGAGGCATATCGGACGGTGA+CGG + chr6_3:23707438-23707457 Msa0945090:intron 55.0%
GGTTGGAATTGGAGGACGGA+AGG + chr6_3:23708038-23708057 Msa0945090:CDS 55.0%
TCTTTGTACCGTCAGGGGTG+GGG + chr6_3:23708084-23708103 Msa0945090:CDS 55.0%
GGGGATGAGTGCTCAGTATG+CGG + chr6_3:23708103-23708122 Msa0945090:CDS 55.0%
GATGAGTGCTCAGTATGCGG+AGG + chr6_3:23708106-23708125 Msa0945090:CDS 55.0%
! CTGGTGTATTCGGTGATCCC+AGG + chr6_3:23708183-23708202 Msa0945090:CDS 55.0%
CTCCCTTCTCTGACCACACA+TGG + chr6_3:23708436-23708455 Msa0945090:intron 55.0%
GGACCATGTGTGGTCAGAGA+AGG - chr6_3:23708442-23708461 None:intergenic 55.0%
AGGTCCTTGTCACTCTACCC+TGG - chr6_3:23710968-23710987 None:intergenic 55.0%
AAGGTCCCACGCTTACTTGC+TGG - chr6_3:23711068-23711087 None:intergenic 55.0%
ACCTTCTGTTCAACCCGCTG+TGG + chr6_3:23712119-23712138 Msa0945090:intron 55.0%
ACTTTAACCCCAGCCACAGC+GGG - chr6_3:23712135-23712154 None:intergenic 55.0%
ACGACAGGAGCCAACAGCAA+GGG + chr6_3:23712594-23712613 Msa0945090:CDS 55.0%
GAAGTCCCCATCGTCATTGC+TGG - chr6_3:23712640-23712659 None:intergenic 55.0%
TACAAAACCGTCGACGGCCG+CGG + chr6_3:23707276-23707295 Msa0945090:CDS 60.0%
GAGTGTGATGCAACCGTGGC+CGG - chr6_3:23707319-23707338 None:intergenic 60.0%
CTGGGGAGCTGAGTAGAGAG+AGG + chr6_3:23710362-23710381 Msa0945090:intron 60.0%
!! GCCACAGCGGGTTGAACAGA+AGG - chr6_3:23712123-23712142 None:intergenic 60.0%
TCTGTTCAACCCGCTGTGGC+TGG + chr6_3:23712123-23712142 Msa0945090:intron 60.0%
CTGTTCAACCCGCTGTGGCT+GGG + chr6_3:23712124-23712143 Msa0945090:intron 60.0%
TGTTCAACCCGCTGTGGCTG+GGG + chr6_3:23712125-23712144 Msa0945090:intron 60.0%
TATCCCGGGTTCAACGGTGG+TGG + chr6_3:23712567-23712586 Msa0945090:CDS 60.0%
ATCCCGGGTTCAACGGTGGT+GGG + chr6_3:23712568-23712587 Msa0945090:CDS 60.0%
!! CTTGCTGTTGGCTCCTGTCG+TGG - chr6_3:23712595-23712614 None:intergenic 60.0%
CACGACAGGAGCCAACAGCA+AGG + chr6_3:23712593-23712612 Msa0945090:CDS 60.0%
GGGGGTCCAGCAATGACGAT+GGG + chr6_3:23712631-23712650 Msa0945090:CDS 60.0%
GGGGTCCAGCAATGACGATG+GGG + chr6_3:23712632-23712651 Msa0945090:CDS 60.0%
GCTGGCGATGCGACCCAAAC+TGG + chr6_3:23707028-23707047 Msa0945090:CDS 65.0%
!!! TGGTTTTGGTCGCGCCGCCA+TGG + chr6_3:23707086-23707105 Msa0945090:CDS 65.0%
!! GGTTTTGGTCGCGCCGCCAT+GGG + chr6_3:23707087-23707106 Msa0945090:CDS 65.0%
GCCGCCATGGGAGGTAAAGG+AGG + chr6_3:23707099-23707118 Msa0945090:CDS 65.0%
! ACGGCGTGACGGAGTGTTCC+TGG - chr6_3:23707177-23707196 None:intergenic 65.0%
CGCGCGAGTCCAACGCATGT+AGG + chr6_3:23707411-23707430 Msa0945090:intron 65.0%
! GTACTCGCAATGGTGGCGCG+TGG + chr6_3:23707941-23707960 Msa0945090:intron 65.0%
GCACTCATCCCCACCCCTGA+CGG - chr6_3:23708095-23708114 None:intergenic 65.0%
GTCCCACCACCGTTGAACCC+GGG - chr6_3:23712573-23712592 None:intergenic 65.0%
GGTCCCACCACCGTTGAACC+CGG - chr6_3:23712574-23712593 None:intergenic 65.0%
!! AACGGTGGTGGGACCACGAC+AGG + chr6_3:23712579-23712598 Msa0945090:CDS 65.0%
GGGGGGTCCAGCAATGACGA+TGG + chr6_3:23712630-23712649 Msa0945090:CDS 65.0%
!! TAGCGGTGCTGCTTGGCTGC+TGG - chr6_3:23712685-23712704 None:intergenic 65.0%
!! AGGGTGCTAGCGGTGCTGCT+TGG - chr6_3:23712692-23712711 None:intergenic 65.0%
TTTGGTCGCGCCGCCATGGG+AGG + chr6_3:23707090-23707109 Msa0945090:CDS 70.0%
CGCGCCGCCATGGGAGGTAA+AGG + chr6_3:23707096-23707115 Msa0945090:CDS 70.0%
ATTTGCGCCGCGGCCGTCGA+CGG - chr6_3:23707286-23707305 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 23706478 23712983 23706478 ID=Msa0945090;Name=Msa0945090
chr6_3 mRNA 23706478 23712983 23706478 ID=Msa0945090-mRNA-1;Parent=Msa0945090;Name=Msa0945090-mRNA-1;_AED=0.16;_eAED=0.16;_QI=245|0.75|0.6|1|1|1|5|171|373
chr6_3 exon 23706478 23706853 23706478 ID=Msa0945090-mRNA-1:exon:6638;Parent=Msa0945090-mRNA-1
chr6_3 exon 23706945 23707374 23706945 ID=Msa0945090-mRNA-1:exon:6639;Parent=Msa0945090-mRNA-1
chr6_3 exon 23707747 23707839 23707747 ID=Msa0945090-mRNA-1:exon:6640;Parent=Msa0945090-mRNA-1
chr6_3 exon 23707999 23708204 23707999 ID=Msa0945090-mRNA-1:exon:6641;Parent=Msa0945090-mRNA-1
chr6_3 exon 23712551 23712983 23712551 ID=Msa0945090-mRNA-1:exon:6642;Parent=Msa0945090-mRNA-1
chr6_3 five_prime_UTR 23706478 23706722 23706478 ID=Msa0945090-mRNA-1:five_prime_utr;Parent=Msa0945090-mRNA-1
chr6_3 CDS 23706723 23706853 23706723 ID=Msa0945090-mRNA-1:cds;Parent=Msa0945090-mRNA-1
chr6_3 CDS 23706945 23707374 23706945 ID=Msa0945090-mRNA-1:cds;Parent=Msa0945090-mRNA-1
chr6_3 CDS 23707747 23707839 23707747 ID=Msa0945090-mRNA-1:cds;Parent=Msa0945090-mRNA-1
chr6_3 CDS 23707999 23708204 23707999 ID=Msa0945090-mRNA-1:cds;Parent=Msa0945090-mRNA-1
chr6_3 CDS 23712551 23712812 23712551 ID=Msa0945090-mRNA-1:cds;Parent=Msa0945090-mRNA-1
chr6_3 three_prime_UTR 23712813 23712983 23712813 ID=Msa0945090-mRNA-1:three_prime_utr;Parent=Msa0945090-mRNA-1
Gene Sequence

>Msa0945090

ATGCTTCCTATGAGCTGCATTCTTTTAATGTGCCTCTTGTGCTCTTTCTTATCTCAAATCAAAGCTTTCTCCAACCTCACCTTACCCCACCAACATCCTTACCCTGAAGCTGTGGTTCACGAACTTCATCAGAAAATCAATGTGTCATTTTCTAGAAGGGAACTGCTCTCAAAAGACCAAGGCAATTGTTTAACCGGAAACCCGGTAGACGATTGCTGGCGATGCGACCCAAACTGGTCCGCAAACCGTCAGAAATTAGCGGATTGCGGAATTGGTTTTGGTCGCGCCGCCATGGGAGGTAAAGGAGGTCAGATCTACATAGTGACAGATTCCTCCGACAACGACCCAGCAAATCCAGTTCCAGGAACACTCCGTCACGCCGTGATTCAAGACGAACCACTCTGGATAATCTTCTCCTCTTCAATGACAATAAACCTCCGTCATGAACTCATCTTCAATTCTTACAAAACCGTCGACGGCCGCGGCGCAAATGTTCAAATCACCGGCCACGGTTGCATCACACTCCAATACATCTCAAACGTGATAATCCACAATATCCATTGGGAAATGTATGCTATCGGAGGCAGTGCTAATCCTACTATTAACAGTCAGGGTAACCGTTACACAGCTCCTTCCGATCCAAATGCTAAAGAGGTGACAAAGCGCGTGGATACAAATGATAATGAATGGAGTGGTTGGAATTGGAGGACGGAAGGGGATATAATGGTAAATGGAGCATTCTTTGTACCGTCAGGGGTGGGGATGAGTGCTCAGTATGCGGAGGCGTCAAGTGTACAGCCAAAATCCGCGGAGCAAATTAACCAGCTTACCATGTACTCTGGTGTATTCGGTGATCCCAGGGATAATGGAGATATATATCCCGGGTTCAACGGTGGTGGGACCACGACAGGAGCCAACAGCAAGGGTTACAATGGGAATGGGGGGTCCAGCAATGACGATGGGGACTTCTTTGGGATGATATTCAAAGGTACCAGCAGCCAAGCAGCACCGCTAGCACCCTACTCATCATCAATTGTATTTGTTTCAACTTTTTTGTCTCTTTTAATTATTTTCAATTTGGACATTATCACCAACTATGATATTCTATTATCATTACTATGA
Protein sequence

>Msa0945090

MLPMSCILLMCLLCSFLSQIKAFSNLTLPHQHPYPEAVVHELHQKINVSFSRRELLSKDQGNCLTGNPVDDCWRCDPNWSANRQKLADCGIGFGRAAMGGKGGQIYIVTDSSDNDPANPVPGTLRHAVIQDEPLWIIFSSSMTINLRHELIFNSYKTVDGRGANVQITGHGCITLQYISNVIIHNIHWEMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVDTNDNEWSGWNWRTEGDIMVNGAFFVPSGVGMSAQYAEASSVQPKSAEQINQLTMYSGVFGDPRDNGDIYPGFNGGGTTTGANSKGYNGNGGSSNDDGDFFGMIFKGTSSQAAPLAPYSSSIVFVSTFLSLLIIFNLDIITNYDILLSLL*