AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0173990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173990 MtrunA17_Chr1g0194241 83.810 105 13 2 1 102 46 149 1.24e-41 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 60 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGTTTGTCGAGGAATTA+AGG 0.177097 1_4:-59485640 None:intergenic
GGGACTGTTGGGATTGATTT+AGG 0.197835 1_4:+59485798 Msa0173990:CDS
GGATGGAACTGCCGAGGTTT+AGG 0.232598 1_4:+59485941 Msa0173990:three_prime_UTR
AGTTCCAAAATTAAAATATC+TGG 0.273666 1_4:+59485976 Msa0173990:three_prime_UTR
CAAAATGAGTGAAAATATTA+AGG 0.307429 1_4:+59482373 Msa0173990:CDS
CCGAGAACAATGAGTATTAT+AGG 0.312617 1_4:+59485920 Msa0173990:exon
GAGGAAGATGACACGGAAAA+AGG 0.323663 1_4:+59482503 Msa0173990:CDS
ACATCATGTTCATCAAATAT+AGG 0.340383 1_4:-59485870 None:intergenic
GATGGAACTGCCGAGGTTTA+GGG 0.351033 1_4:+59485942 Msa0173990:three_prime_UTR
GCTATGCAAGTGGATGAATT+AGG 0.351606 1_4:+59485777 Msa0173990:CDS
TCTCGGCGGGCCTGACTAAC+AGG 0.366827 1_4:-59485903 None:intergenic
TAGGTTCTGTTGATGTTAGT+GGG 0.375575 1_4:+59485817 Msa0173990:CDS
AAGGAAGAAAATAGAGTTGT+TGG 0.384092 1_4:+59482392 Msa0173990:CDS
TTAGGTTCTGTTGATGTTAG+TGG 0.403661 1_4:+59485816 Msa0173990:CDS
ACTGTTTGTCGAGGAATTAA+GGG 0.420044 1_4:-59485639 None:intergenic
GCGCATCACCAGGAGCTTCA+AGG 0.426971 1_4:-59485668 None:intergenic
CCAAAGTCTCACTAAGGAAA+AGG 0.428053 1_4:-59486021 None:intergenic
AACGGTGGGTCCTGTTAGTC+AGG 0.434669 1_4:+59485893 Msa0173990:CDS
TGCAGGTACATCAACTTTGC+TGG 0.439086 1_4:+59485581 Msa0173990:intron
GAGGCATTTCGTTATATGCT+TGG 0.443080 1_4:+59486061 Msa0173990:three_prime_UTR
CTATGCAAGTGGATGAATTA+GGG 0.444092 1_4:+59485778 Msa0173990:CDS
CAGACTTGAAGAAGCGTAAG+AGG 0.463326 1_4:+59485724 Msa0173990:CDS
CCTATAATACTCATTGTTCT+CGG 0.464000 1_4:-59485920 None:intergenic
TGGATGAATTAGGGACTGTT+GGG 0.475281 1_4:+59485787 Msa0173990:CDS
GTGGATGAATTAGGGACTGT+TGG 0.485533 1_4:+59485786 Msa0173990:CDS
TTCTGTTGATGTTAGTGGGG+GGG 0.490426 1_4:+59485821 Msa0173990:CDS
AGGTTCTGTTGATGTTAGTG+GGG 0.498994 1_4:+59485818 Msa0173990:CDS
CTTGAAGATTTCGCTGAAGA+GGG 0.506298 1_4:+59482437 Msa0173990:CDS
CGCATCACCAGGAGCTTCAA+GGG 0.508725 1_4:-59485667 None:intergenic
TTAACAGCTTGCGCATCACC+AGG 0.517652 1_4:-59485678 None:intergenic
CAAAGTCTCACTAAGGAAAA+GGG 0.523150 1_4:-59486020 None:intergenic
AGATCAGTGCTAGCAAGAAA+AGG 0.526361 1_4:+59482237 Msa0173990:CDS
GTGCTTGCCCTTGAAGCTCC+TGG 0.527733 1_4:+59485660 Msa0173990:CDS
GGTTCTGTTGATGTTAGTGG+GGG 0.528065 1_4:+59485819 Msa0173990:CDS
TAATACTCATTGTTCTCGGC+GGG 0.528698 1_4:-59485916 None:intergenic
GCAAGCTGTTAACAAAGAAA+AGG 0.533958 1_4:+59485689 Msa0173990:CDS
CCAGAAAAGAACAATACTGC+TGG 0.535785 1_4:+59485615 Msa0173990:CDS
AACAAAGAAAAGGAAAGTGC+TGG 0.541762 1_4:+59485699 Msa0173990:CDS
ACTTGAAGATTTCGCTGAAG+AGG 0.542202 1_4:+59482436 Msa0173990:CDS
TGCGTGAGACACGTGAGCGT+TGG 0.555623 1_4:+59482345 Msa0173990:CDS
TCACTAAGGAAAAGGGCGTC+CGG 0.560478 1_4:-59486013 None:intergenic
CTTGAAGAAGCGTAAGAGGA+AGG 0.566229 1_4:+59485728 Msa0173990:CDS
TAACTGTGCTAATATTCTTG+AGG 0.568361 1_4:+59482484 Msa0173990:CDS
AGTGGACCAAAGTCTCACTA+AGG 0.569464 1_4:-59486027 None:intergenic
GTTCTGTTGATGTTAGTGGG+GGG 0.579604 1_4:+59485820 Msa0173990:CDS
GAACAATGAGTATTATAGGA+TGG 0.590556 1_4:+59485924 Msa0173990:exon
AAATCTTCAAGTTTAAACGT+TGG 0.594153 1_4:-59482425 None:intergenic
ATAATACTCATTGTTCTCGG+CGG 0.616016 1_4:-59485917 None:intergenic
ATTATAGGATGGAACTGCCG+AGG 0.628856 1_4:+59485935 Msa0173990:three_prime_UTR
AGGGCAAGCACTGTTTGTCG+AGG 0.628864 1_4:-59485648 None:intergenic
TAATGTTATACAAGAGAGTG+TGG 0.629134 1_4:+59485755 Msa0173990:CDS
CGCTCAGGTGCCCTAAACCT+CGG 0.632209 1_4:-59485952 None:intergenic
GAAGATTTCGCTGAAGAGGG+TGG 0.633634 1_4:+59482440 Msa0173990:CDS
AGAGAGTGTGGCTATGCAAG+TGG 0.641651 1_4:+59485767 Msa0173990:CDS
TCTGGTTCGCTATTACAAGC+CGG 0.649802 1_4:+59485994 Msa0173990:three_prime_UTR
ATTTGATGAACATGATGTAA+CGG 0.656070 1_4:+59485875 Msa0173990:CDS
TATTCTTGAGGAAGATGACA+CGG 0.661009 1_4:+59482496 Msa0173990:CDS
GGTCCACTCAAATAAAACAG+AGG 0.699900 1_4:+59486042 Msa0173990:three_prime_UTR
TGATGAACATGATGTAACGG+TGG 0.703682 1_4:+59485878 Msa0173990:CDS
GATGAACATGATGTAACGGT+GGG 0.724602 1_4:+59485879 Msa0173990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTATCTTCT+GGG - chr1_4:59483135-59483154 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTATCTTC+TGG - chr1_4:59483136-59483155 None:intergenic 10.0%
!! AAAATAAAAACAAAAGATTT+AGG + chr1_4:59484095-59484114 Msa0173990:intron 10.0%
!! AAATAAAAACAAAAGATTTA+GGG + chr1_4:59484096-59484115 Msa0173990:intron 10.0%
!! ATTTCTTATAATATTACATA+AGG + chr1_4:59484234-59484253 Msa0173990:intron 10.0%
!!! GTTTTTTTGTTAATATTAAA+TGG + chr1_4:59484578-59484597 Msa0173990:intron 10.0%
!!! TTTTATATGAAAAAAATATG+AGG - chr1_4:59484617-59484636 None:intergenic 10.0%
!!! TTTTCAAAAATAAATAAGTT+GGG - chr1_4:59484642-59484661 None:intergenic 10.0%
!!! TTTTTCAAAAATAAATAAGT+TGG - chr1_4:59484643-59484662 None:intergenic 10.0%
!! AATAAAAATATTTGCATTAT+TGG + chr1_4:59484963-59484982 Msa0173990:intron 10.0%
!! TATTAGAAACAATATTATTT+AGG + chr1_4:59485468-59485487 Msa0173990:intron 10.0%
!!! AAAAAGTGTTAATTATTTTG+AGG - chr1_4:59483057-59483076 None:intergenic 15.0%
!! ACTTGATAAATTTCTTATAT+GGG + chr1_4:59483503-59483522 Msa0173990:intron 15.0%
!! CAAAATTCTGAATATTTATA+GGG - chr1_4:59483546-59483565 None:intergenic 15.0%
!! ACAAAATTCTGAATATTTAT+AGG - chr1_4:59483547-59483566 None:intergenic 15.0%
!!! AAAATGTGATTTTATTTTGT+AGG + chr1_4:59483733-59483752 Msa0173990:intron 15.0%
!!! AAATGTGATTTTATTTTGTA+GGG + chr1_4:59483734-59483753 Msa0173990:intron 15.0%
!!! AATTATTGAATCATTTTTGT+GGG - chr1_4:59483954-59483973 None:intergenic 15.0%
!!! AAATTATTGAATCATTTTTG+TGG - chr1_4:59483955-59483974 None:intergenic 15.0%
!!! ATGGAATATTGATTTATTTA+TGG + chr1_4:59484015-59484034 Msa0173990:intron 15.0%
!! ATAAGTTAGAAATTCATTTA+TGG + chr1_4:59484071-59484090 Msa0173990:intron 15.0%
!! AATAAAAACAAAAGATTTAG+GGG + chr1_4:59484097-59484116 Msa0173990:intron 15.0%
!!! TTTTTTTTCTTTCAAAAACT+CGG - chr1_4:59484198-59484217 None:intergenic 15.0%
!!! GTAATACATTTTTAGATATA+TGG - chr1_4:59484306-59484325 None:intergenic 15.0%
!! CTCATTCAAAAAAATATATA+TGG - chr1_4:59484358-59484377 None:intergenic 15.0%
!!! ATATATTTTTTTGAATGAGA+AGG + chr1_4:59484359-59484378 Msa0173990:intron 15.0%
!! GTAAAAAAAAAAAACTATGT+TGG - chr1_4:59484901-59484920 None:intergenic 15.0%
!! CAAAATGAGTGAAAATATTA+AGG + chr1_4:59482373-59482392 Msa0173990:CDS 20.0%
!! TTAGTTGAAGAAAATTATAG+AGG - chr1_4:59482727-59482746 None:intergenic 20.0%
!! TAAATAACTTCAATATGCTA+CGG - chr1_4:59482825-59482844 None:intergenic 20.0%
!! TACAAGTAGTTAAATTTGTA+TGG + chr1_4:59482865-59482884 Msa0173990:intron 20.0%
!!! GTTGTATTTTTGTTTGATAT+TGG - chr1_4:59483171-59483190 None:intergenic 20.0%
!!! TATCTTTTTCGTATTTTTCT+GGG - chr1_4:59483196-59483215 None:intergenic 20.0%
!!! TTATCTTTTTCGTATTTTTC+TGG - chr1_4:59483197-59483216 None:intergenic 20.0%
!! GACTTGATAAATTTCTTATA+TGG + chr1_4:59483502-59483521 Msa0173990:intron 20.0%
!!! ATATGGGTTAATTAAGTAAA+TGG + chr1_4:59483519-59483538 Msa0173990:intron 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr1_4:59483577-59483596 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr1_4:59483578-59483597 None:intergenic 20.0%
!!! TGTTGATGGAAAATTTTATA+TGG - chr1_4:59483606-59483625 None:intergenic 20.0%
!!! TGCTGTTGAAAAATTTTATA+GGG - chr1_4:59483637-59483656 None:intergenic 20.0%
!!! ATGCTGTTGAAAAATTTTAT+AGG - chr1_4:59483638-59483657 None:intergenic 20.0%
!!! GTTGATGGAAAAATTTTATA+GGG - chr1_4:59483668-59483687 None:intergenic 20.0%
!!! TGTTGATGGAAAAATTTTAT+AGG - chr1_4:59483669-59483688 None:intergenic 20.0%
!!! CATTTTTCTTAAGCATTTTA+GGG - chr1_4:59483700-59483719 None:intergenic 20.0%
!!! ACATTTTTCTTAAGCATTTT+AGG - chr1_4:59483701-59483720 None:intergenic 20.0%
!! ACAAAACTGTGATTATTTAT+AGG + chr1_4:59483764-59483783 Msa0173990:intron 20.0%
!! CAAAACTGTGATTATTTATA+GGG + chr1_4:59483765-59483784 Msa0173990:intron 20.0%
!! TTAATCCTTCTTATATTGAT+TGG + chr1_4:59483801-59483820 Msa0173990:intron 20.0%
!!! ATATTGATTGGATATCTAAA+AGG + chr1_4:59483813-59483832 Msa0173990:intron 20.0%
!!! TTTTTAGATATATGGATTGT+TGG - chr1_4:59484298-59484317 None:intergenic 20.0%
!! TTCAAAACAAACAAAAAACA+TGG - chr1_4:59484328-59484347 None:intergenic 20.0%
!!! CTAAACTATATAGAGTATTT+CGG + chr1_4:59484450-59484469 Msa0173990:intron 20.0%
!! AAGAAGAATACAAAATATCT+TGG - chr1_4:59484931-59484950 None:intergenic 20.0%
!! AAATACCCATAAAAAATAAC+GGG - chr1_4:59485030-59485049 None:intergenic 20.0%
!! GAAATACCCATAAAAAATAA+CGG - chr1_4:59485031-59485050 None:intergenic 20.0%
!! TCAAAAAAACCAAAAAAAGT+GGG - chr1_4:59485096-59485115 None:intergenic 20.0%
!!! TTTTTTTGGTTTTTTTGAGT+GGG + chr1_4:59485098-59485117 Msa0173990:intron 20.0%
!!! TCTTTCTTTCAAACATTTTA+CGG + chr1_4:59485235-59485254 Msa0173990:intron 20.0%
!! TAGAAACAATATTATTTAGG+AGG + chr1_4:59485471-59485490 Msa0173990:intron 20.0%
!! AGTTCCAAAATTAAAATATC+TGG + chr1_4:59485976-59485995 Msa0173990:three_prime_UTR 20.0%
! TGAAGAAAAACAAAAAGAAG+AGG + chr1_4:59482283-59482302 Msa0173990:CDS 25.0%
!! AAATCTTCAAGTTTAAACGT+TGG - chr1_4:59482428-59482447 None:intergenic 25.0%
! ATGCATCAAGAAATTTGTAA+TGG + chr1_4:59482563-59482582 Msa0173990:intron 25.0%
! TATTGGCAACTAATAAGTTA+GGG - chr1_4:59482609-59482628 None:intergenic 25.0%
! ATATTGGCAACTAATAAGTT+AGG - chr1_4:59482610-59482629 None:intergenic 25.0%
!! TCGTTAACTATGAATTTTGA+AGG - chr1_4:59482786-59482805 None:intergenic 25.0%
! GAGGAATTTGTAATTTATTG+TGG - chr1_4:59483038-59483057 None:intergenic 25.0%
!!! ATCTTTTTCGTATTTTTCTG+GGG - chr1_4:59483195-59483214 None:intergenic 25.0%
!! CTATCTCATCCAAATATTTT+TGG + chr1_4:59483369-59483388 Msa0173990:intron 25.0%
! TGTGTTCATCCAAAAATATT+TGG - chr1_4:59483381-59483400 None:intergenic 25.0%
! GATATCCAATCAATATAAGA+AGG - chr1_4:59483809-59483828 None:intergenic 25.0%
!! CAATTCAACTACAATACTTT+TGG - chr1_4:59483882-59483901 None:intergenic 25.0%
! ATGACGTGAAAGATTAATTA+TGG + chr1_4:59483996-59484015 Msa0173990:intron 25.0%
!!! CTTATCTTTTTTAGTCTACT+AGG - chr1_4:59484135-59484154 None:intergenic 25.0%
! CGAAATACTCTATATAGTTT+AGG - chr1_4:59484452-59484471 None:intergenic 25.0%
!! TATATAGAGTATTTCGGTTT+GGG + chr1_4:59484456-59484475 Msa0173990:intron 25.0%
! TAACCATCCGTTATATTATT+TGG + chr1_4:59484489-59484508 Msa0173990:intron 25.0%
! AAACCAGCCAAATAATATAA+CGG - chr1_4:59484499-59484518 None:intergenic 25.0%
! TATGAAATGTTGTGTCAATA+TGG + chr1_4:59484854-59484873 Msa0173990:intron 25.0%
! ATGAAATGTTGTGTCAATAT+GGG + chr1_4:59484855-59484874 Msa0173990:intron 25.0%
! TATTTGCATTATTGGATAAG+TGG + chr1_4:59484971-59484990 Msa0173990:intron 25.0%
! ATTTGCATTATTGGATAAGT+GGG + chr1_4:59484972-59484991 Msa0173990:intron 25.0%
! CTCAAAAAAACCAAAAAAAG+TGG - chr1_4:59485097-59485116 None:intergenic 25.0%
!!! CTTTTTTTGGTTTTTTTGAG+TGG + chr1_4:59485097-59485116 Msa0173990:intron 25.0%
! CACAAATGTTCAATACAAAT+CGG + chr1_4:59485316-59485335 Msa0173990:intron 25.0%
! AACAATATTATTTAGGAGGA+AGG + chr1_4:59485475-59485494 Msa0173990:intron 25.0%
! AACAGACATATCAAACTTTA+TGG - chr1_4:59485529-59485548 None:intergenic 25.0%
! ACATCATGTTCATCAAATAT+AGG - chr1_4:59485873-59485892 None:intergenic 25.0%
! ATTTGATGAACATGATGTAA+CGG + chr1_4:59485875-59485894 Msa0173990:CDS 25.0%
!!! CGAACCAGATATTTTAATTT+TGG - chr1_4:59485983-59486002 None:intergenic 25.0%
AAGGAAGAAAATAGAGTTGT+TGG + chr1_4:59482392-59482411 Msa0173990:CDS 30.0%
! AAAATAGAGTTGTTGGTGTT+TGG + chr1_4:59482399-59482418 Msa0173990:intron 30.0%
TAACTGTGCTAATATTCTTG+AGG + chr1_4:59482484-59482503 Msa0173990:CDS 30.0%
AATCTACATGTTGCTCATAT+TGG - chr1_4:59482626-59482645 None:intergenic 30.0%
AGTCTCTACAATTTATCACT+GGG - chr1_4:59482995-59483014 None:intergenic 30.0%
TAGTCTCTACAATTTATCAC+TGG - chr1_4:59482996-59483015 None:intergenic 30.0%
!!! TAGAGACTAAATTTTCGAGT+TGG + chr1_4:59483007-59483026 Msa0173990:intron 30.0%
GTTCAACACCAACAATAAAA+AGG + chr1_4:59483107-59483126 Msa0173990:intron 30.0%
! TTTTGTGTTGGGTTCTTAAT+TGG - chr1_4:59483262-59483281 None:intergenic 30.0%
AATTAAGAACCCAACACAAA+AGG + chr1_4:59483261-59483280 Msa0173990:intron 30.0%
ATAGGGACTAAAAATGTTGA+TGG - chr1_4:59483620-59483639 None:intergenic 30.0%
TTAGGGACTAAAAATGTTGA+TGG - chr1_4:59483683-59483702 None:intergenic 30.0%
ATGCTTAAGAAAAATGTCAC+AGG + chr1_4:59483704-59483723 Msa0173990:intron 30.0%
TGCTTAAGAAAAATGTCACA+GGG + chr1_4:59483705-59483724 Msa0173990:intron 30.0%
!! TATTGAATCATTTTTGTGGG+TGG - chr1_4:59483951-59483970 None:intergenic 30.0%
AATATACCATGTGATCATCT+AGG + chr1_4:59484382-59484401 Msa0173990:intron 30.0%
ATATACCATGTGATCATCTA+GGG + chr1_4:59484383-59484402 Msa0173990:intron 30.0%
TATAGTTTAGGTCTTGAGTT+TGG - chr1_4:59484440-59484459 None:intergenic 30.0%
! CTATATAGAGTATTTCGGTT+TGG + chr1_4:59484455-59484474 Msa0173990:intron 30.0%
! GTTATATTATTTGGCTGGTT+TGG + chr1_4:59484498-59484517 Msa0173990:intron 30.0%
! AAACCCACTAATTTTCAGTT+TGG + chr1_4:59484523-59484542 Msa0173990:intron 30.0%
! AACCCACTAATTTTCAGTTT+GGG + chr1_4:59484524-59484543 Msa0173990:intron 30.0%
!!! TTTGGTTATTTTGATGCTAG+TGG - chr1_4:59484787-59484806 None:intergenic 30.0%
! AATTCGAATGTTGCACTTTT+TGG - chr1_4:59484805-59484824 None:intergenic 30.0%
TATTGGATAAGTGGGATTAT+TGG + chr1_4:59484980-59484999 Msa0173990:intron 30.0%
ATAAGTGGGATTATTGGATT+TGG + chr1_4:59484986-59485005 Msa0173990:intron 30.0%
TAAGTGGGATTATTGGATTT+GGG + chr1_4:59484987-59485006 Msa0173990:intron 30.0%
!! CCATAAAAAATAACGGGTTT+CGG - chr1_4:59485024-59485043 None:intergenic 30.0%
!!! CGAAACCCGTTATTTTTTAT+GGG + chr1_4:59485022-59485041 Msa0173990:intron 30.0%
GTTGGGTAATTTGATGAATA+TGG - chr1_4:59485064-59485083 None:intergenic 30.0%
! AAAACCAAAAAAAGTGGGTT+GGG - chr1_4:59485091-59485110 None:intergenic 30.0%
AAAAACCAAAAAAAGTGGGT+TGG - chr1_4:59485092-59485111 None:intergenic 30.0%
TCTCCAAGTATAGATGATTA+GGG - chr1_4:59485163-59485182 None:intergenic 30.0%
TCGGAGAAATCTCAAAAATA+TGG + chr1_4:59485335-59485354 Msa0173990:intron 30.0%
ACTACGAGATGAAGTTTATT+AGG - chr1_4:59485420-59485439 None:intergenic 30.0%
AATAAACTTCATCTCGTAGT+TGG + chr1_4:59485420-59485439 Msa0173990:intron 30.0%
AACATTATACTAAATGCTGC+AGG + chr1_4:59485564-59485583 Msa0173990:intron 30.0%
TAATGTTATACAAGAGAGTG+TGG + chr1_4:59485755-59485774 Msa0173990:CDS 30.0%
CCTATAATACTCATTGTTCT+CGG - chr1_4:59485923-59485942 None:intergenic 30.0%
GAACAATGAGTATTATAGGA+TGG + chr1_4:59485924-59485943 Msa0173990:exon 30.0%
TATTCTTGAGGAAGATGACA+CGG + chr1_4:59482496-59482515 Msa0173990:CDS 35.0%
TAGGGAAAGACATCATGAAA+AGG - chr1_4:59482591-59482610 None:intergenic 35.0%
! TCTGGGTTCCTTTTTATTGT+TGG - chr1_4:59483118-59483137 None:intergenic 35.0%
!! GTTTGATATTGGTGATGCTA+GGG - chr1_4:59483160-59483179 None:intergenic 35.0%
!! TGTTTGATATTGGTGATGCT+AGG - chr1_4:59483161-59483180 None:intergenic 35.0%
ATCCACAAAGCAACTTAAGA+GGG + chr1_4:59483222-59483241 Msa0173990:intron 35.0%
! ATTCACTGTCCTTTTGTGTT+GGG - chr1_4:59483273-59483292 None:intergenic 35.0%
TCTAAAAGGTTCATCAGAAC+AGG + chr1_4:59483827-59483846 Msa0173990:intron 35.0%
AAGTAGACCTTCAGATTAGT+CGG + chr1_4:59484157-59484176 Msa0173990:intron 35.0%
CTAAAAACCGACTAATCTGA+AGG - chr1_4:59484167-59484186 None:intergenic 35.0%
TATACCATGTGATCATCTAG+GGG + chr1_4:59484384-59484403 Msa0173990:intron 35.0%
! CAGCCAAATAATATAACGGA+TGG - chr1_4:59484495-59484514 None:intergenic 35.0%
CATCCGTTATATTATTTGGC+TGG + chr1_4:59484493-59484512 Msa0173990:intron 35.0%
CACCCAAACTGAAAATTAGT+GGG - chr1_4:59484529-59484548 None:intergenic 35.0%
! CACTAATTTTCAGTTTGGGT+GGG + chr1_4:59484528-59484547 Msa0173990:intron 35.0%
! ACTAATTTTCAGTTTGGGTG+GGG + chr1_4:59484529-59484548 Msa0173990:intron 35.0%
!!! CCGAAACCCGTTATTTTTTA+TGG + chr1_4:59485021-59485040 Msa0173990:intron 35.0%
!!! TGGGTTTGACCATGTTTTTT+GGG + chr1_4:59485117-59485136 Msa0173990:intron 35.0%
CTCCAAGTATAGATGATTAG+GGG - chr1_4:59485162-59485181 None:intergenic 35.0%
CTCTCCAAGTATAGATGATT+AGG - chr1_4:59485164-59485183 None:intergenic 35.0%
ATGTCTGTTGCTGAAAAAAG+TGG + chr1_4:59485540-59485559 Msa0173990:intron 35.0%
!!! GTATTGTTCTTTTCTGGTTG+AGG - chr1_4:59485612-59485631 None:intergenic 35.0%
ACTGTTTGTCGAGGAATTAA+GGG - chr1_4:59485642-59485661 None:intergenic 35.0%
GCAAGCTGTTAACAAAGAAA+AGG + chr1_4:59485689-59485708 Msa0173990:CDS 35.0%
! AACAAAGAAAAGGAAAGTGC+TGG + chr1_4:59485699-59485718 Msa0173990:CDS 35.0%
CTATGCAAGTGGATGAATTA+GGG + chr1_4:59485778-59485797 Msa0173990:CDS 35.0%
TTAGGTTCTGTTGATGTTAG+TGG + chr1_4:59485816-59485835 Msa0173990:CDS 35.0%
TAGGTTCTGTTGATGTTAGT+GGG + chr1_4:59485817-59485836 Msa0173990:CDS 35.0%
ATAATACTCATTGTTCTCGG+CGG - chr1_4:59485920-59485939 None:intergenic 35.0%
CCGAGAACAATGAGTATTAT+AGG + chr1_4:59485920-59485939 Msa0173990:exon 35.0%
!!! TTAATTTTGGAACTACGCTC+AGG - chr1_4:59485970-59485989 None:intergenic 35.0%
CAAAGTCTCACTAAGGAAAA+GGG - chr1_4:59486023-59486042 None:intergenic 35.0%
!!! ATGCCTCTGTTTTATTTGAG+TGG - chr1_4:59486048-59486067 None:intergenic 35.0%
AGATCAGTGCTAGCAAGAAA+AGG + chr1_4:59482237-59482256 Msa0173990:CDS 40.0%
ACTTGAAGATTTCGCTGAAG+AGG + chr1_4:59482436-59482455 Msa0173990:CDS 40.0%
CTTGAAGATTTCGCTGAAGA+GGG + chr1_4:59482437-59482456 Msa0173990:CDS 40.0%
CATCCACAAAGCAACTTAAG+AGG + chr1_4:59483221-59483240 Msa0173990:intron 40.0%
! TTCCCTCTTAAGTTGCTTTG+TGG - chr1_4:59483227-59483246 None:intergenic 40.0%
! CATTCACTGTCCTTTTGTGT+TGG - chr1_4:59483274-59483293 None:intergenic 40.0%
ATCTCTTCCAGCTTAACAAG+AGG - chr1_4:59483343-59483362 None:intergenic 40.0%
GTCATATGTTGTGCGATAGA+TGG + chr1_4:59483466-59483485 Msa0173990:intron 40.0%
CCACCCAAACTGAAAATTAG+TGG - chr1_4:59484530-59484549 None:intergenic 40.0%
! CCACTAATTTTCAGTTTGGG+TGG + chr1_4:59484527-59484546 Msa0173990:intron 40.0%
!! CAAAAAAAGTGGGTTGGGTT+GGG - chr1_4:59485086-59485105 None:intergenic 40.0%
!!! GTGGGTTTGACCATGTTTTT+TGG + chr1_4:59485116-59485135 Msa0173990:intron 40.0%
TTGGGTCAACCCAAAAAACA+TGG - chr1_4:59485129-59485148 None:intergenic 40.0%
! AGATGATTAGGGGTGTACAT+GGG - chr1_4:59485152-59485171 None:intergenic 40.0%
! TAGATGATTAGGGGTGTACA+TGG - chr1_4:59485153-59485172 None:intergenic 40.0%
CACCCCTAATCATCTATACT+TGG + chr1_4:59485157-59485176 Msa0173990:intron 40.0%
TACTCATACCTTAGCACAGA+TGG - chr1_4:59485380-59485399 None:intergenic 40.0%
TATTAGGCGACAAGCAAACA+TGG - chr1_4:59485404-59485423 None:intergenic 40.0%
! CCAGCAGTATTGTTCTTTTC+TGG - chr1_4:59485618-59485637 None:intergenic 40.0%
CCAGAAAAGAACAATACTGC+TGG + chr1_4:59485615-59485634 Msa0173990:CDS 40.0%
CACTGTTTGTCGAGGAATTA+AGG - chr1_4:59485643-59485662 None:intergenic 40.0%
GCTATGCAAGTGGATGAATT+AGG + chr1_4:59485777-59485796 Msa0173990:CDS 40.0%
TGGATGAATTAGGGACTGTT+GGG + chr1_4:59485787-59485806 Msa0173990:CDS 40.0%
AGGTTCTGTTGATGTTAGTG+GGG + chr1_4:59485818-59485837 Msa0173990:CDS 40.0%
TGATGAACATGATGTAACGG+TGG + chr1_4:59485878-59485897 Msa0173990:CDS 40.0%
GATGAACATGATGTAACGGT+GGG + chr1_4:59485879-59485898 Msa0173990:CDS 40.0%
TAATACTCATTGTTCTCGGC+GGG - chr1_4:59485919-59485938 None:intergenic 40.0%
CCAAAGTCTCACTAAGGAAA+AGG - chr1_4:59486024-59486043 None:intergenic 40.0%
! CCTTTTCCTTAGTGAGACTT+TGG + chr1_4:59486021-59486040 Msa0173990:three_prime_UTR 40.0%
GGTCCACTCAAATAAAACAG+AGG + chr1_4:59486042-59486061 Msa0173990:three_prime_UTR 40.0%
! GAGGCATTTCGTTATATGCT+TGG + chr1_4:59486061-59486080 Msa0173990:three_prime_UTR 40.0%
GAGGAAGATGACACGGAAAA+AGG + chr1_4:59482503-59482522 Msa0173990:CDS 45.0%
CTCATGACCTCTTGTTAAGC+TGG + chr1_4:59483333-59483352 Msa0173990:intron 45.0%
GGATTGTTGGAACGATGCAA+TGG - chr1_4:59484285-59484304 None:intergenic 45.0%
TACACCCCTAGATGATCACA+TGG - chr1_4:59484391-59484410 None:intergenic 45.0%
!! GAGTTGGTTTGGGTTGGATT+TGG + chr1_4:59484414-59484433 Msa0173990:intron 45.0%
GGGATTATTGGATTTGGGTG+TGG + chr1_4:59484992-59485011 Msa0173990:intron 45.0%
!! CCAAAAAAAGTGGGTTGGGT+TGG - chr1_4:59485087-59485106 None:intergenic 45.0%
!!! CCAACCCAACCCACTTTTTT+TGG + chr1_4:59485084-59485103 Msa0173990:intron 45.0%
! ATTAGGGGTGTACATGGGTT+GGG - chr1_4:59485147-59485166 None:intergenic 45.0%
AGAACATGCCATCTGTGCTA+AGG + chr1_4:59485369-59485388 Msa0173990:intron 45.0%
TGCAGGTACATCAACTTTGC+TGG + chr1_4:59485581-59485600 Msa0173990:intron 45.0%
! CAGACTTGAAGAAGCGTAAG+AGG + chr1_4:59485724-59485743 Msa0173990:CDS 45.0%
! CTTGAAGAAGCGTAAGAGGA+AGG + chr1_4:59485728-59485747 Msa0173990:CDS 45.0%
GTGGATGAATTAGGGACTGT+TGG + chr1_4:59485786-59485805 Msa0173990:CDS 45.0%
! GGGACTGTTGGGATTGATTT+AGG + chr1_4:59485798-59485817 Msa0173990:CDS 45.0%
GGTTCTGTTGATGTTAGTGG+GGG + chr1_4:59485819-59485838 Msa0173990:CDS 45.0%
GTTCTGTTGATGTTAGTGGG+GGG + chr1_4:59485820-59485839 Msa0173990:CDS 45.0%
TTCTGTTGATGTTAGTGGGG+GGG + chr1_4:59485821-59485840 Msa0173990:CDS 45.0%
ATTATAGGATGGAACTGCCG+AGG + chr1_4:59485935-59485954 Msa0173990:three_prime_UTR 45.0%
! TCTGGTTCGCTATTACAAGC+CGG + chr1_4:59485994-59486013 Msa0173990:three_prime_UTR 45.0%
AGTGGACCAAAGTCTCACTA+AGG - chr1_4:59486030-59486049 None:intergenic 45.0%
!! AAAAAACAAAATAATAATTT+GGG - chr1_4:59484565-59484584 None:intergenic 5.0%
!! AAAAAAACAAAATAATAATT+TGG - chr1_4:59484566-59484585 None:intergenic 5.0%
GAAGATTTCGCTGAAGAGGG+TGG + chr1_4:59482440-59482459 Msa0173990:CDS 50.0%
CAGGAAAGTCACACGCTTCA+AGG + chr1_4:59483846-59483865 Msa0173990:intron 50.0%
! ATCTAGGGGTGTACGTGAGT+TGG + chr1_4:59484398-59484417 Msa0173990:intron 50.0%
!! GGGTGTACGTGAGTTGGTTT+GGG + chr1_4:59484404-59484423 Msa0173990:intron 50.0%
!! GTACGTGAGTTGGTTTGGGT+TGG + chr1_4:59484408-59484427 Msa0173990:intron 50.0%
TTTCAGTTTGGGTGGGGCAT+AGG + chr1_4:59484535-59484554 Msa0173990:intron 50.0%
TTCAGTTTGGGTGGGGCATA+GGG + chr1_4:59484536-59484555 Msa0173990:intron 50.0%
!! AAAGTGGGTTGGGTTGGGTT+GGG - chr1_4:59485081-59485100 None:intergenic 50.0%
!! AAAAGTGGGTTGGGTTGGGT+TGG - chr1_4:59485082-59485101 None:intergenic 50.0%
! GATTAGGGGTGTACATGGGT+TGG - chr1_4:59485148-59485167 None:intergenic 50.0%
TTAACAGCTTGCGCATCACC+AGG - chr1_4:59485681-59485700 None:intergenic 50.0%
! AGAGAGTGTGGCTATGCAAG+TGG + chr1_4:59485767-59485786 Msa0173990:CDS 50.0%
GATGGAACTGCCGAGGTTTA+GGG + chr1_4:59485942-59485961 Msa0173990:three_prime_UTR 50.0%
!! TCACTAAGGAAAAGGGCGTC+CGG - chr1_4:59486016-59486035 None:intergenic 50.0%
!! GGGGTGTACGTGAGTTGGTT+TGG + chr1_4:59484403-59484422 Msa0173990:intron 55.0%
! AGGGCAAGCACTGTTTGTCG+AGG - chr1_4:59485651-59485670 None:intergenic 55.0%
CGCATCACCAGGAGCTTCAA+GGG - chr1_4:59485670-59485689 None:intergenic 55.0%
AACGGTGGGTCCTGTTAGTC+AGG + chr1_4:59485893-59485912 Msa0173990:CDS 55.0%
GGATGGAACTGCCGAGGTTT+AGG + chr1_4:59485941-59485960 Msa0173990:three_prime_UTR 55.0%
TGCGTGAGACACGTGAGCGT+TGG + chr1_4:59482345-59482364 Msa0173990:CDS 60.0%
GTGCTTGCCCTTGAAGCTCC+TGG + chr1_4:59485660-59485679 Msa0173990:CDS 60.0%
GCGCATCACCAGGAGCTTCA+AGG - chr1_4:59485671-59485690 None:intergenic 60.0%
CGCTCAGGTGCCCTAAACCT+CGG - chr1_4:59485955-59485974 None:intergenic 60.0%
TCTCGGCGGGCCTGACTAAC+AGG - chr1_4:59485906-59485925 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 59482233 59486092 59482233 ID=Msa0173990;Name=Msa0173990
chr1_4 mRNA 59482233 59486092 59482233 ID=Msa0173990-mRNA-1;Parent=Msa0173990;Name=Msa0173990-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.5|0.33|1|0.5|0.33|3|160|209
chr1_4 exon 59482233 59482415 59482233 ID=Msa0173990-mRNA-1:exon:18682;Parent=Msa0173990-mRNA-1
chr1_4 exon 59482425 59482524 59482425 ID=Msa0173990-mRNA-1:exon:18683;Parent=Msa0173990-mRNA-1
chr1_4 exon 59485586 59486092 59485586 ID=Msa0173990-mRNA-1:exon:18684;Parent=Msa0173990-mRNA-1
chr1_4 CDS 59482233 59482415 59482233 ID=Msa0173990-mRNA-1:cds;Parent=Msa0173990-mRNA-1
chr1_4 CDS 59482425 59482524 59482425 ID=Msa0173990-mRNA-1:cds;Parent=Msa0173990-mRNA-1
chr1_4 CDS 59485586 59485932 59485586 ID=Msa0173990-mRNA-1:cds;Parent=Msa0173990-mRNA-1
chr1_4 three_prime_UTR 59485933 59486092 59485933 ID=Msa0173990-mRNA-1:three_prime_utr;Parent=Msa0173990-mRNA-1
Gene Sequence

>Msa0173990

ATGGAGATCAGTGCTAGCAAGAAAAGGAAAATCTGCAACGAAGAATTAGATGAAGAAAAACAAAAAGAAGAGGAAGAGAAAATAGAGACTTTTTTTGCTCTAGTGAGAAGCATGCGTGAGACACGTGAGCGTTGGAAGAACAAAATGAGTGAAAATATTAAGGAAGAAAATAGAGTTGTTGGTCCAACGTTTAAACTTGAAGATTTCGCTGAAGAGGGTGGTGCATCTAAGAACAATAATATTAACTGTGCTAATATTCTTGAGGAAGATGACACGGAAAAAGGTACATCAACTTTGCTGGAATTGCCTCAACCAGAAAAGAACAATACTGCTGGACCCTTAATTCCTCGACAAACAGTGCTTGCCCTTGAAGCTCCTGGTGATGCGCAAGCTGTTAACAAAGAAAAGGAAAGTGCTGGTTCAGACTTGAAGAAGCGTAAGAGGAAGGTTAATAATGTTATACAAGAGAGTGTGGCTATGCAAGTGGATGAATTAGGGACTGTTGGGATTGATTTAGGTTCTGTTGATGTTAGTGGGGGGGATAGTGTTATGAAAATTAAGTCTAATCCTATATTTGATGAACATGATGTAACGGTGGGTCCTGTTAGTCAGGCCCGCCGAGAACAATGA

Protein sequence

>Msa0173990

MEISASKKRKICNEELDEEKQKEEEEKIETFFALVRSMRETRERWKNKMSENIKEENRVVGPTFKLEDFAEEGGASKNNNINCANILEEDDTEKGTSTLLELPQPEKNNTAGPLIPRQTVLALEAPGDAQAVNKEKESAGSDLKKRKRKVNNVIQESVAMQVDELGTVGIDLGSVDVSGGDSVMKIKSNPIFDEHDVTVGPVSQARREQ*