AlfalfaGEDB | Msa0092050

M. sativa cultivar zhongmu-4 / Msa0092050

KEGG: K00924|K08959|K08960
GO: GO:0000226 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005911 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0008092 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0012505 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030054 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0036211 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046777 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051510 GO:0051716 GO:0055028 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0098657 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0092050	XP_039683963.1	98.884	448	5	0	1	448	1	448	0.0	925

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0092050	sp\|Q8LPJ1\|CKL6_ARATH	72.594	478	98	11	1	448	5	479	0.0	679

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0092050	A0A072VLK3	97.577	454	5	1	1	448	1	454	0.0	919

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0092050	Msa0092140	0.985421	1.636959e-163	-8.615850e-47
Msa0092050	Msa0122800	0.993708	1.208065e-201	-8.615850e-47
Msa0092050	Msa0165230	0.927523	1.043415e-91	-8.615850e-47
Msa0092050	Msa0165290	0.942808	3.723321e-102	-8.615850e-47
Msa0092050	Msa1415960	0.959977	4.861478e-118	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0092050	MtrunA17_Chr1g0183631	97.577	454	5	1	1	448	1	454	0.0	919
Msa0092050	MtrunA17_Chr7g0261501	78.065	465	83	7	1	448	1	463	0.0	726
Msa0092050	MtrunA17_Chr1g0187571	71.304	460	115	6	1	446	2	458	0.0	641
Msa0092050	MtrunA17_Chr1g0166821	71.145	454	120	5	1	446	2	452	0.0	632
Msa0092050	MtrunA17_Chr2g0329981	65.358	433	114	8	1	425	1	405	0.0	551
Msa0092050	MtrunA17_Chr4g0071031	72.222	360	87	4	1	347	1	360	0.0	545
Msa0092050	MtrunA17_Chr8g0342821	59.958	472	154	10	1	444	1	465	0.0	540
Msa0092050	MtrunA17_Chr2g0299661	55.274	474	176	6	1	447	1	465	0.0	516
Msa0092050	MtrunA17_Chr6g0486611	76.797	306	71	0	1	306	1	306	2.51e-179	508
Msa0092050	MtrunA17_Chr1g0167261	66.935	372	90	4	1	370	2	342	6.97e-178	501

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0092050	AT4G28540.1	72.594	478	98	11	1	448	5	479	679
Msa0092050	AT4G14340.1	70.861	453	116	7	1	446	7	450	642
Msa0092050	AT3G23340.1	71.938	449	110	7	1	446	1	436	642
Msa0092050	AT1G03930.1	68.354	474	121	8	1	448	1	471	626
Msa0092050	AT5G43320.1	67.579	475	124	7	1	446	1	474	625
Msa0092050	AT3G23340.2	69.265	449	108	8	1	446	1	422	608
Msa0092050	AT1G04440.1	66.164	464	137	8	1	446	1	462	599
Msa0092050	AT5G44100.1	82.000	350	58	2	1	346	1	349	597
Msa0092050	AT5G44100.2	82.000	350	58	2	1	346	1	349	597
Msa0092050	AT4G14340.2	83.537	328	53	1	1	328	7	333	576

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Find 171 sgRNAs with CRISPR-Local

Find 488 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGGAGTGGTTCTTT+TGG	0.322856	1_2:-74272812	Msa0092050:CDS
AAACAAAAGATTCAAGTTCA+TGG	0.356941	1_2:-74266217	Msa0092050:three_prime_UTR
AAACTGTATATGATTCTTCA+AGG	0.471640	1_2:-74272099	Msa0092050:CDS
AAATAAGAACCTTACAGGCA+CGG	0.632067	1_2:-74269330	Msa0092050:CDS
AAATAATAATAATTCAGCAA+TGG	0.606102	1_2:+74265819	None:intergenic
AAATCTTCTGAAGCAATCTG+AGG	0.574956	1_2:+74266133	None:intergenic
AACGAATGATATGGTGCTGT+AGG	0.611429	1_2:-74265897	Msa0092050:three_prime_UTR
AACTCCAAACCATTTGAGGT+GGG	0.533255	1_2:+74272062	None:intergenic
AAGCAGTTCAAGAAGAGCCA+TGG	0.646616	1_2:-74266506	Msa0092050:CDS
AAGTATGATACAAACTCAGA+GGG	0.655305	1_2:+74267671	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAAGTAGTTTCACAAGTT+TGG	+	chr1_2:74265935-74265954	None:intergenic	30.0%
TTGGAAAAACAGAATAAGGT+AGG	+	chr1_2:74266002-74266021	None:intergenic	30.0%
TGAATAATTCCTCATTCATG+AGG	-	chr1_2:74266145-74266164	Msa0092050:three_prime_UTR	30.0%
CAAGATTAAATGCAAATTGG+GGG	+	chr1_2:74266202-74266221	None:intergenic	30.0%
TTTGAATTTGTCCACAATCA+AGG	-	chr1_2:74266343-74266362	Msa0092050:CDS	30.0%
TTGAATTTGTCCACAATCAA+GGG	-	chr1_2:74266344-74266363	Msa0092050:CDS	30.0%
TTTATCATGGATCATGTGAT+TGG	-	chr1_2:74266391-74266410	Msa0092050:CDS	30.0%
ATTGGTGGAAAGTTTAAACT+TGG	-	chr1_2:74266409-74266428	Msa0092050:CDS	30.0%
TCAGCTGTTAATATACAAAC+TGG	-	chr1_2:74266575-74266594	Msa0092050:intron	30.0%
TGTTAATATACAAACTGGAG+AGG	-	chr1_2:74266580-74266599	Msa0092050:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	74265817	74273453	74265817	ID=Msa0092050;Name=Msa0092050
chr1_2	mRNA	74265817	74273453	74265817	ID=Msa0092050-mRNA-1;Parent=Msa0092050;Name=Msa0092050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=580\|1\|1\|1\|1\|1\|13\|498\|448
chr1_2	exon	74265817	74266560	74265817	ID=Msa0092050-mRNA-1:exon:26185;Parent=Msa0092050-mRNA-1
chr1_2	exon	74266972	74267093	74266972	ID=Msa0092050-mRNA-1:exon:26184;Parent=Msa0092050-mRNA-1
chr1_2	exon	74267283	74267346	74267283	ID=Msa0092050-mRNA-1:exon:26183;Parent=Msa0092050-mRNA-1
chr1_2	exon	74267420	74267493	74267420	ID=Msa0092050-mRNA-1:exon:26182;Parent=Msa0092050-mRNA-1
chr1_2	exon	74267585	74267711	74267585	ID=Msa0092050-mRNA-1:exon:26181;Parent=Msa0092050-mRNA-1
chr1_2	exon	74268941	74269025	74268941	ID=Msa0092050-mRNA-1:exon:26180;Parent=Msa0092050-mRNA-1
chr1_2	exon	74269107	74269170	74269107	ID=Msa0092050-mRNA-1:exon:26179;Parent=Msa0092050-mRNA-1
chr1_2	exon	74269294	74269355	74269294	ID=Msa0092050-mRNA-1:exon:26178;Parent=Msa0092050-mRNA-1
chr1_2	exon	74269644	74269714	74269644	ID=Msa0092050-mRNA-1:exon:26177;Parent=Msa0092050-mRNA-1
chr1_2	exon	74271750	74271845	74271750	ID=Msa0092050-mRNA-1:exon:26176;Parent=Msa0092050-mRNA-1
chr1_2	exon	74271945	74272163	74271945	ID=Msa0092050-mRNA-1:exon:26175;Parent=Msa0092050-mRNA-1
chr1_2	exon	74272651	74272691	74272651	ID=Msa0092050-mRNA-1:exon:26174;Parent=Msa0092050-mRNA-1
chr1_2	exon	74272798	74273453	74272798	ID=Msa0092050-mRNA-1:exon:26173;Parent=Msa0092050-mRNA-1
chr1_2	five_prime_UTR	74272874	74273453	74272874	ID=Msa0092050-mRNA-1:five_prime_utr;Parent=Msa0092050-mRNA-1
chr1_2	CDS	74272798	74272873	74272798	ID=Msa0092050-mRNA-1:cds;Parent=Msa0092050-mRNA-1
chr1_2	CDS	74272651	74272691	74272651	ID=Msa0092050-mRNA-1:cds;Parent=Msa0092050-mRNA-1
chr1_2	CDS	74271945	74272163	74271945	ID=Msa0092050-mRNA-1:cds;Parent=Msa0092050-mRNA-1
chr1_2	CDS	74271750	74271845	74271750	ID=Msa0092050-mRNA-1:cds;Parent=Msa0092050-mRNA-1
chr1_2	CDS	74269644	74269714	74269644	ID=Msa0092050-mRNA-1:cds;Parent=Msa0092050-mRNA-1
chr1_2	CDS	74269294	74269355	74269294	ID=Msa0092050-mRNA-1:cds;Parent=Msa0092050-mRNA-1
chr1_2	CDS	74269107	74269170	74269107	ID=Msa0092050-mRNA-1:cds;Parent=Msa0092050-mRNA-1
chr1_2	CDS	74268941	74269025	74268941	ID=Msa0092050-mRNA-1:cds;Parent=Msa0092050-mRNA-1
chr1_2	CDS	74267585	74267711	74267585	ID=Msa0092050-mRNA-1:cds;Parent=Msa0092050-mRNA-1
chr1_2	CDS	74267420	74267493	74267420	ID=Msa0092050-mRNA-1:cds;Parent=Msa0092050-mRNA-1
chr1_2	CDS	74267283	74267346	74267283	ID=Msa0092050-mRNA-1:cds;Parent=Msa0092050-mRNA-1
chr1_2	CDS	74266972	74267093	74266972	ID=Msa0092050-mRNA-1:cds;Parent=Msa0092050-mRNA-1
chr1_2	CDS	74266315	74266560	74266315	ID=Msa0092050-mRNA-1:cds;Parent=Msa0092050-mRNA-1
chr1_2	three_prime_UTR	74265817	74266314	74265817	ID=Msa0092050-mRNA-1:three_prime_utr;Parent=Msa0092050-mRNA-1

Gene Sequence

>Msa0092050

ATGGATCATGTGATTGGTGGAAAGTTTAAACTTGGAAGGAAAATTGGGAGTGGTTCTTTTGGAGAGCTCTATTTAGCTGTTAATATACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAATCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAACTGTATATGATTCTTCAAGGAGGAACTGGAATCCCCCACCTCAAATGGTTTGGAGTTGAGGGAGAGTACAATGTCATGGTCATCGACCTTCTTGGACCCAGTCTGGAAGATTTATTCAATTATTGTAACCGGAAATTCACTTTGAAGTCGGTGTTGATGCTTGCCGATCAATTAATTAACAGAGTTGAATACATGCATTCAAGAGGCTTTCTTCACCGAGACATAAAGCCAGACAATTTTCTGATGGGCCTCGGACGTAAAGCAAATCAAGTGTATGCCATTGACTTCGGCCTTGCGAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCGTACAGGGAAAATAAGAACCTTACAGGCACGGCACGCTATGCAAGTGTCAACACCCATCTTGGAATCGAACAAAGTCGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTAATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAAGGACTGAGGGCTGGAAACAAAAAGCAAAAATACGATAAAATCAGTGAGACGAAGGTATCAACTCCAATAGAGGTGCTCTGTAAATCATATCCCTCTGAGTTTGTATCATACTTCCACTATTGCCGTTCGTTGAGGTTTGAGGACAAACCAGATTATTCATATTTAAAGAGACTTTTCCGAGACCTTTTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTGTATTGAAGTATCCACAGAGTAGTGGCAGCTCTAGAGGACGGCATGGCACTGGCAAGGCAGCTATGCATGCAGCTACACCAGTACATAAAGCACAAAAGATTCCAGTTGGGAGAGAGATTCGGGAGAAATTATCTGGTGCTGTTGTTGAAGCATTCACCCAGAGGAACCGCGCAAATTCTAGCCCTCATCACGGTGAACACACCAGACATAGGACTTATGATGATGTGCACTATGCCCAACACAATTCAACTCGATATGGAAGCAGTTCAAGAAGAGCCATGGTATCATCAAAGCCAAATTCCTCAGGTGACCATTCTGGCAGGATGGCCACAAGTGGGGGCCGTCCATCTGGCGCACATAGAGTTCAACCTGTGTATGATACGAAACAAGCAACTTTTGCTCGCAATGGGTCTATGAGAGGCCACCGTGATGATCCTCTGAGGAGCTTTGAGCTCCTCACTATCAGGAAGTAA

Protein sequence

>Msa0092050

MDHVIGGKFKLGRKIGSGSFGELYLAVNIQTGEEVAVKLESVKTRHPQLHYESKLYMILQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKFTLKSVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDFGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLRAGNKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQSSGSSRGRHGTGKAAMHAATPVHKAQKIPVGREIREKLSGAVVEAFTQRNRANSSPHHGEHTRHRTYDDVHYAQHNSTRYGSSSRRAMVSSKPNSSGDHSGRMATSGGRPSGAHRVQPVYDTKQATFARNGSMRGHRDDPLRSFELLTIRK*