Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122800 | XP_039683963.1 | 98.884 | 448 | 5 | 0 | 1 | 448 | 1 | 448 | 0.0 | 925 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122800 | sp|Q8LPJ1|CKL6_ARATH | 72.594 | 478 | 98 | 11 | 1 | 448 | 5 | 479 | 0.0 | 679 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122800 | A0A072VLK3 | 97.577 | 454 | 5 | 1 | 1 | 448 | 1 | 454 | 0.0 | 919 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092050 | Msa0122800 | 0.993708 | 1.208065e-201 | -8.615850e-47 |
| Msa0092140 | Msa0122800 | 0.982053 | 4.121067e-154 | -8.615850e-47 |
| Msa0122800 | Msa0165230 | 0.925970 | 8.895375e-91 | -8.615850e-47 |
| Msa0122800 | Msa0165290 | 0.935169 | 1.292681e-96 | -8.615850e-47 |
| Msa0122800 | Msa1415960 | 0.960486 | 1.302948e-118 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122800 | MtrunA17_Chr1g0183631 | 97.577 | 454 | 5 | 1 | 1 | 448 | 1 | 454 | 0.0 | 919 |
| Msa0122800 | MtrunA17_Chr7g0261501 | 78.065 | 465 | 83 | 7 | 1 | 448 | 1 | 463 | 0.0 | 726 |
| Msa0122800 | MtrunA17_Chr1g0187571 | 71.304 | 460 | 115 | 6 | 1 | 446 | 2 | 458 | 0.0 | 641 |
| Msa0122800 | MtrunA17_Chr1g0166821 | 71.145 | 454 | 120 | 5 | 1 | 446 | 2 | 452 | 0.0 | 632 |
| Msa0122800 | MtrunA17_Chr2g0329981 | 65.358 | 433 | 114 | 8 | 1 | 425 | 1 | 405 | 0.0 | 551 |
| Msa0122800 | MtrunA17_Chr4g0071031 | 72.222 | 360 | 87 | 4 | 1 | 347 | 1 | 360 | 0.0 | 545 |
| Msa0122800 | MtrunA17_Chr8g0342821 | 59.958 | 472 | 154 | 10 | 1 | 444 | 1 | 465 | 0.0 | 540 |
| Msa0122800 | MtrunA17_Chr2g0299661 | 55.274 | 474 | 176 | 6 | 1 | 447 | 1 | 465 | 0.0 | 516 |
| Msa0122800 | MtrunA17_Chr6g0486611 | 76.797 | 306 | 71 | 0 | 1 | 306 | 1 | 306 | 2.51e-179 | 508 |
| Msa0122800 | MtrunA17_Chr1g0167261 | 66.935 | 372 | 90 | 4 | 1 | 370 | 2 | 342 | 6.97e-178 | 501 |
| Msa0122800 | MtrunA17_Chr8g0390211 | 77.181 | 298 | 68 | 0 | 1 | 298 | 1 | 298 | 3.13e-177 | 502 |
| Msa0122800 | MtrunA17_Chr3g0140071 | 55.582 | 421 | 171 | 4 | 1 | 417 | 1 | 409 | 3.06e-164 | 469 |
| Msa0122800 | MtrunA17_Chr1g0146151 | 70.508 | 295 | 87 | 0 | 1 | 295 | 1 | 295 | 1.34e-162 | 465 |
| Msa0122800 | MtrunA17_Chr7g0214531 | 37.716 | 289 | 161 | 6 | 5 | 277 | 31 | 316 | 9.44e-58 | 200 |
| Msa0122800 | MtrunA17_Chr3g0140431 | 37.276 | 279 | 162 | 6 | 5 | 273 | 32 | 307 | 6.90e-55 | 192 |
| Msa0122800 | MtrunA17_Chr1g0146301 | 36.918 | 279 | 163 | 6 | 5 | 273 | 118 | 393 | 3.86e-54 | 191 |
| Msa0122800 | MtrunA17_Chr1g0213321 | 36.268 | 284 | 167 | 6 | 5 | 277 | 113 | 393 | 1.13e-53 | 190 |
| Msa0122800 | MtrunA17_Chr7g0253211 | 36.525 | 282 | 163 | 5 | 9 | 277 | 324 | 602 | 6.49e-53 | 190 |
| Msa0122800 | MtrunA17_Chr8g0340491 | 36.170 | 282 | 158 | 7 | 9 | 273 | 128 | 404 | 9.78e-50 | 179 |
| Msa0122800 | MtrunA17_Chr5g0405421 | 26.818 | 220 | 144 | 6 | 8 | 219 | 98 | 308 | 3.11e-14 | 74.7 |
| Msa0122800 | MtrunA17_Chr7g0267751 | 29.167 | 216 | 131 | 9 | 9 | 215 | 135 | 337 | 9.08e-14 | 73.6 |
| Msa0122800 | MtrunA17_Chr4g0072831 | 32.680 | 153 | 71 | 6 | 7 | 153 | 8 | 134 | 2.91e-13 | 70.5 |
| Msa0122800 | MtrunA17_Chr3g0107051 | 29.817 | 218 | 133 | 9 | 5 | 214 | 17 | 222 | 8.51e-13 | 70.1 |
| Msa0122800 | MtrunA17_Chr7g0245031 | 34.375 | 128 | 70 | 4 | 109 | 236 | 252 | 365 | 1.92e-12 | 68.9 |
| Msa0122800 | MtrunA17_Chr8g0346071 | 30.415 | 217 | 126 | 9 | 7 | 213 | 15 | 216 | 1.01e-11 | 66.6 |
| Msa0122800 | MtrunA17_Chr7g0267771 | 26.522 | 230 | 142 | 8 | 9 | 228 | 88 | 300 | 1.06e-11 | 66.6 |
| Msa0122800 | MtrunA17_Chr5g0444171 | 27.488 | 211 | 137 | 6 | 9 | 213 | 92 | 292 | 2.81e-11 | 65.5 |
| Msa0122800 | MtrunA17_Chr8g0374701 | 27.948 | 229 | 139 | 10 | 6 | 219 | 122 | 339 | 3.10e-11 | 65.5 |
| Msa0122800 | MtrunA17_Chr1g0201571 | 28.302 | 212 | 127 | 9 | 9 | 209 | 126 | 323 | 3.46e-11 | 65.5 |
| Msa0122800 | MtrunA17_Chr1g0157131 | 27.652 | 264 | 158 | 10 | 4 | 251 | 69 | 315 | 5.09e-11 | 64.7 |
| Msa0122800 | MtrunA17_Chr4g0075541 | 25.887 | 282 | 179 | 10 | 11 | 281 | 89 | 351 | 5.17e-11 | 64.3 |
| Msa0122800 | MtrunA17_Chr8g0387671 | 29.437 | 231 | 134 | 11 | 9 | 228 | 66 | 278 | 6.83e-11 | 64.3 |
| Msa0122800 | MtrunA17_Chr3g0107011 | 26.070 | 257 | 137 | 10 | 3 | 236 | 8 | 234 | 8.99e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122800 | AT4G28540.1 | 72.594 | 478 | 98 | 11 | 1 | 448 | 5 | 479 | 0.0 | 679 |
| Msa0122800 | AT4G14340.1 | 70.861 | 453 | 116 | 7 | 1 | 446 | 7 | 450 | 0.0 | 642 |
| Msa0122800 | AT3G23340.1 | 71.938 | 449 | 110 | 7 | 1 | 446 | 1 | 436 | 0.0 | 642 |
| Msa0122800 | AT1G03930.1 | 68.354 | 474 | 121 | 8 | 1 | 448 | 1 | 471 | 0.0 | 626 |
| Msa0122800 | AT5G43320.1 | 67.579 | 475 | 124 | 7 | 1 | 446 | 1 | 474 | 0.0 | 625 |
| Msa0122800 | AT3G23340.2 | 69.265 | 449 | 108 | 8 | 1 | 446 | 1 | 422 | 0.0 | 608 |
| Msa0122800 | AT1G04440.1 | 66.164 | 464 | 137 | 8 | 1 | 446 | 1 | 462 | 0.0 | 599 |
| Msa0122800 | AT5G44100.1 | 82.000 | 350 | 58 | 2 | 1 | 346 | 1 | 349 | 0.0 | 597 |
| Msa0122800 | AT5G44100.2 | 82.000 | 350 | 58 | 2 | 1 | 346 | 1 | 349 | 0.0 | 597 |
| Msa0122800 | AT4G14340.2 | 83.537 | 328 | 53 | 1 | 1 | 328 | 7 | 333 | 0.0 | 576 |
| Msa0122800 | AT5G43320.2 | 81.024 | 332 | 60 | 1 | 1 | 329 | 1 | 332 | 0.0 | 565 |
| Msa0122800 | AT5G43320.3 | 81.024 | 332 | 60 | 1 | 1 | 329 | 1 | 332 | 0.0 | 565 |
| Msa0122800 | AT1G72710.1 | 75.152 | 330 | 79 | 2 | 1 | 328 | 1 | 329 | 0.0 | 536 |
| Msa0122800 | AT4G26100.1 | 80.872 | 298 | 57 | 0 | 1 | 298 | 1 | 298 | 0.0 | 535 |
| Msa0122800 | AT5G57015.1 | 80.537 | 298 | 58 | 0 | 1 | 298 | 1 | 298 | 0.0 | 529 |
| Msa0122800 | AT2G19470.1 | 73.556 | 329 | 84 | 3 | 1 | 326 | 1 | 329 | 0.0 | 524 |
| Msa0122800 | AT4G28880.3 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.65e-176 | 499 |
| Msa0122800 | AT4G28880.2 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.65e-176 | 499 |
| Msa0122800 | AT4G28880.1 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.65e-176 | 499 |
| Msa0122800 | AT4G28880.4 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.65e-176 | 499 |
| Msa0122800 | AT4G28860.2 | 70.533 | 319 | 94 | 0 | 1 | 319 | 1 | 319 | 1.08e-174 | 494 |
| Msa0122800 | AT4G28860.1 | 74.832 | 298 | 75 | 0 | 1 | 298 | 1 | 298 | 2.02e-174 | 495 |
| Msa0122800 | AT4G08800.1 | 66.216 | 296 | 68 | 2 | 1 | 296 | 1 | 264 | 3.73e-145 | 416 |
| Msa0122800 | AT2G25760.2 | 39.286 | 280 | 155 | 4 | 9 | 273 | 107 | 386 | 7.33e-59 | 204 |
| Msa0122800 | AT2G25760.1 | 38.929 | 280 | 153 | 5 | 9 | 273 | 107 | 383 | 3.87e-56 | 197 |
| Msa0122800 | AT3G13670.1 | 35.986 | 289 | 166 | 6 | 5 | 277 | 131 | 416 | 3.68e-53 | 189 |
| Msa0122800 | AT5G18190.2 | 35.461 | 282 | 166 | 5 | 9 | 277 | 130 | 408 | 1.84e-52 | 187 |
| Msa0122800 | AT5G18190.1 | 35.461 | 282 | 166 | 5 | 9 | 277 | 130 | 408 | 1.84e-52 | 187 |
| Msa0122800 | AT3G03940.1 | 35.461 | 282 | 166 | 5 | 9 | 277 | 140 | 418 | 4.67e-52 | 186 |
| Msa0122800 | AT3G50530.1 | 28.319 | 226 | 141 | 7 | 5 | 219 | 144 | 359 | 1.10e-13 | 73.6 |
| Msa0122800 | AT5G21326.1 | 29.870 | 231 | 113 | 10 | 7 | 214 | 11 | 215 | 3.38e-13 | 71.6 |
| Msa0122800 | AT3G20410.2 | 28.384 | 229 | 143 | 8 | 9 | 230 | 91 | 305 | 5.47e-12 | 68.2 |
| Msa0122800 | AT3G20410.1 | 28.384 | 229 | 143 | 8 | 9 | 230 | 91 | 305 | 5.47e-12 | 68.2 |
| Msa0122800 | AT2G17890.1 | 25.909 | 220 | 146 | 7 | 8 | 219 | 107 | 317 | 5.77e-12 | 68.2 |
| Msa0122800 | AT1G30270.1 | 27.386 | 241 | 147 | 10 | 7 | 236 | 29 | 252 | 6.34e-12 | 67.8 |
| Msa0122800 | AT1G30270.2 | 27.386 | 241 | 147 | 10 | 7 | 236 | 29 | 252 | 6.50e-12 | 67.8 |
| Msa0122800 | AT2G38910.1 | 28.063 | 253 | 144 | 10 | 1 | 230 | 119 | 356 | 1.07e-11 | 67.4 |
| Msa0122800 | AT3G50530.2 | 26.104 | 249 | 148 | 9 | 5 | 219 | 144 | 390 | 1.42e-11 | 67.0 |
| Msa0122800 | AT4G36070.2 | 25.000 | 220 | 148 | 6 | 8 | 219 | 70 | 280 | 1.47e-11 | 67.0 |
| Msa0122800 | AT4G36070.1 | 25.000 | 220 | 148 | 6 | 8 | 219 | 70 | 280 | 1.80e-11 | 66.6 |
| Msa0122800 | AT3G61960.2 | 24.843 | 318 | 204 | 10 | 7 | 318 | 8 | 296 | 1.89e-11 | 66.6 |
| Msa0122800 | AT3G61960.1 | 24.843 | 318 | 204 | 10 | 7 | 318 | 8 | 296 | 2.02e-11 | 66.6 |
| Msa0122800 | AT4G31170.7 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0122800 | AT4G31170.6 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0122800 | AT4G31170.5 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0122800 | AT4G31170.1 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0122800 | AT4G31170.2 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0122800 | AT4G31170.3 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0122800 | AT4G31170.8 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0122800 | AT1G29230.1 | 27.397 | 219 | 141 | 9 | 2 | 213 | 67 | 274 | 2.91e-11 | 65.9 |
| Msa0122800 | AT1G01140.1 | 28.689 | 244 | 140 | 13 | 7 | 236 | 17 | 240 | 3.12e-11 | 65.5 |
| Msa0122800 | AT1G01140.3 | 28.689 | 244 | 140 | 13 | 7 | 236 | 17 | 240 | 3.32e-11 | 65.5 |
| Msa0122800 | AT1G50700.3 | 25.597 | 293 | 192 | 10 | 9 | 293 | 73 | 347 | 4.36e-11 | 65.1 |
| Msa0122800 | AT1G76040.3 | 27.586 | 232 | 147 | 8 | 9 | 233 | 112 | 329 | 4.65e-11 | 65.1 |
| Msa0122800 | AT1G76040.2 | 28.037 | 214 | 136 | 7 | 9 | 215 | 112 | 314 | 4.68e-11 | 65.5 |
| Msa0122800 | AT4G23650.1 | 29.167 | 216 | 131 | 7 | 9 | 215 | 78 | 280 | 6.36e-11 | 64.7 |
| Msa0122800 | AT1G50700.1 | 25.597 | 293 | 192 | 10 | 9 | 293 | 73 | 347 | 6.56e-11 | 64.7 |
| Msa0122800 | AT4G04720.2 | 23.052 | 308 | 201 | 9 | 2 | 293 | 66 | 353 | 8.09e-11 | 64.3 |
| Msa0122800 | AT4G04720.1 | 23.052 | 308 | 201 | 9 | 2 | 293 | 66 | 353 | 8.09e-11 | 64.3 |
| Msa0122800 | AT1G50700.2 | 25.357 | 280 | 184 | 9 | 9 | 281 | 73 | 334 | 8.96e-11 | 64.3 |
Find 171 sgRNAs with CRISPR-Local
Find 488 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTTCATTTCTAAATTT+TGG | 0.111875 | 1_3:-49637492 | Msa0122800:three_prime_UTR |
| TTTAAACTTGGAAGGAAAAT+TGG | 0.141980 | 1_3:-49644047 | Msa0122800:CDS |
| GTTCTTGATATTGATTATTC+TGG | 0.171244 | 1_3:-49644404 | Msa0122800:five_prime_UTR |
| AATCAAGATTAAATGCAAAT+TGG | 0.204360 | 1_3:+49644266 | None:intergenic |
| TAGAATTTGCGCGGTTCCTC+TGG | 0.208716 | 1_3:+49638238 | None:intergenic |
| CAAAAGTAGTTTCACAAGTT+TGG | 0.231854 | 1_3:+49644536 | None:intergenic |
| GAATGGTCACCTGAGGAATT+TGG | 0.252408 | 1_3:+49637691 | None:intergenic |
| TTGTTGGGTTTGGTGAATTT+TGG | 0.279061 | 1_3:-49644227 | Msa0122800:five_prime_UTR |
| CCGACTTCAAAGTGAATTTC+CGG | 0.284081 | 1_3:+49643188 | None:intergenic |
| TGGGATTTCAAGAAGCCTTA+TGG | 0.303360 | 1_3:-49637463 | Msa0122800:three_prime_UTR |
| ATCAAGATTAAATGCAAATT+GGG | 0.306208 | 1_3:+49644267 | None:intergenic |
| ACATACCTTCTCGAATAAAA+AGG | 0.309439 | 1_3:+49638798 | None:intergenic |
| CTCTTTAAATATGAATAATC+TGG | 0.309704 | 1_3:+49638833 | None:intergenic |
| CAAGTCATAATTACCTCTAT+TGG | 0.319914 | 1_3:+49640147 | None:intergenic |
| AAAATTGGGAGTGGTTCTTT+TGG | 0.322856 | 1_3:-49644032 | Msa0122800:CDS |
| ATTTAAAGCAACGAATGATA+TGG | 0.325797 | 1_3:-49637125 | Msa0122800:three_prime_UTR |
| TTCAGTTGGGAGAGAGATTC+GGG | 0.329420 | 1_3:-49638295 | Msa0122800:intron |
| TATTCTGGGATGATTGGTTT+TGG | 0.336900 | 1_3:-49644389 | Msa0122800:five_prime_UTR |
| CTGTTGAAAATCAATCAATT+TGG | 0.339043 | 1_3:-49644166 | Msa0122800:five_prime_UTR |
| AAACAAAAGATTCAAGTTCA+TGG | 0.356941 | 1_3:-49637436 | Msa0122800:three_prime_UTR |
| CAACACAATTCAACTCGATA+TGG | 0.357353 | 1_3:-49637748 | Msa0122800:CDS |
| CATAGCGTGCCGTGCCTGTA+AGG | 0.359631 | 1_3:+49640541 | None:intergenic |
| AATTCCTCAGGTGACCATTC+TGG | 0.359748 | 1_3:-49637688 | Msa0122800:CDS |
| ATTTATTCAATTATTGTAAC+CGG | 0.360177 | 1_3:-49643207 | Msa0122800:CDS |
| GTGCTAATGTATTTCTTAAG+AGG | 0.362458 | 1_3:-49640330 | Msa0122800:CDS |
| TTAAACTTGGAAGGAAAATT+GGG | 0.363410 | 1_3:-49644046 | Msa0122800:CDS |
| TCCAGCCCTCAGTCCTTGCC+AGG | 0.368539 | 1_3:+49640218 | None:intergenic |
| TTCTTGATATTGATTATTCT+GGG | 0.370586 | 1_3:-49644403 | Msa0122800:five_prime_UTR |
| AGGGAAAATAAGAACCTTAC+AGG | 0.372840 | 1_3:-49640555 | Msa0122800:CDS |
| TTTCAGTTGGGAGAGAGATT+CGG | 0.379707 | 1_3:-49638296 | Msa0122800:intron |
| ATTGATTATTCTGGGATGAT+TGG | 0.385224 | 1_3:-49644395 | Msa0122800:five_prime_UTR |
| GTCATGGTCATCGACCTTCT+TGG | 0.387600 | 1_3:-49643244 | Msa0122800:CDS |
| CGACCTTCTTGGACCCAGTC+TGG | 0.390528 | 1_3:-49643233 | Msa0122800:CDS |
| TTTGAATTTGTCCACAATCA+AGG | 0.390569 | 1_3:-49644125 | Msa0122800:five_prime_UTR |
| TTGGGGTGAAGGAATGTAGT+TGG | 0.395154 | 1_3:-49644361 | Msa0122800:five_prime_UTR |
| ATGATTCTTCAAGGAGGAAC+TGG | 0.404829 | 1_3:-49643310 | Msa0122800:CDS |
| ACCTCAACGAACGGCAATAG+TGG | 0.405356 | 1_3:+49638867 | None:intergenic |
| CCTCAACTCCAAACCATTTG+AGG | 0.409202 | 1_3:+49643278 | None:intergenic |
| CGGAGGAAGTGGGTCTTGTT+TGG | 0.413082 | 1_3:+49644566 | None:intergenic |
| GCTTTGAGCTCCTCACTATC+AGG | 0.414666 | 1_3:-49637540 | Msa0122800:CDS |
| GAGATTCGGGAGAAATTATC+TGG | 0.415618 | 1_3:-49638282 | Msa0122800:CDS |
| CTCAAATGGTTTGGAGTTGA+GGG | 0.423483 | 1_3:-49643277 | Msa0122800:CDS |
| TCAGCTGTTAATATACAAAC+TGG | 0.426788 | 1_3:-49643893 | Msa0122800:intron |
| GCAAGTGTCAACACCCATCT+TGG | 0.433561 | 1_3:-49640519 | Msa0122800:CDS |
| ATAGGGATCTTCAGACTCAT+AGG | 0.434481 | 1_3:-49640878 | Msa0122800:CDS |
| TTTATCATGGATCATGTGAT+TGG | 0.443086 | 1_3:-49644077 | Msa0122800:exon |
| CCTCAAATGGTTTGGAGTTG+AGG | 0.448526 | 1_3:-49643278 | Msa0122800:CDS |
| TTGCCGTTCGTTGAGGTTTG+AGG | 0.451388 | 1_3:-49638861 | Msa0122800:CDS |
| TGGATATGCAATGTTATTTG+TGG | 0.454735 | 1_3:-49637218 | Msa0122800:three_prime_UTR |
| ATATCGAGTTGAATTGTGTT+GGG | 0.458129 | 1_3:+49637750 | None:intergenic |
| ACAAAGTCGAAGGGATGATC+TGG | 0.458546 | 1_3:-49640367 | Msa0122800:CDS |
| TTTCGCAAGGCCGAAGTCAA+TGG | 0.458863 | 1_3:+49640905 | None:intergenic |
| ATTGAATAAATCTTCCAGAC+TGG | 0.465309 | 1_3:+49643219 | None:intergenic |
| CATAAAGCACAAAAGATTCC+AGG | 0.469567 | 1_3:-49638501 | Msa0122800:intron |
| AAACTGTATATGATTCTTCA+AGG | 0.471640 | 1_3:-49643319 | Msa0122800:CDS |
| GTGGAAAGTTTAAACTTGGA+AGG | 0.472881 | 1_3:-49644055 | Msa0122800:CDS |
| CTCCAAACCATTTGAGGTGG+GGG | 0.473526 | 1_3:+49643284 | None:intergenic |
| TTGGAGATGAACGGAGGAAG+TGG | 0.485546 | 1_3:+49644555 | None:intergenic |
| GGCAGGATGGCCACAAGTGG+GGG | 0.486821 | 1_3:-49637667 | Msa0122800:CDS |
| ATAGTGAAGCTGTGGATGCC+TGG | 0.493685 | 1_3:+49643348 | None:intergenic |
| TTGAATTTGTCCACAATCAA+GGG | 0.497388 | 1_3:-49644124 | Msa0122800:five_prime_UTR |
| TCTTCCCTGGCAAGGACTGA+GGG | 0.499281 | 1_3:-49640223 | Msa0122800:CDS |
| AGAAGGTATCTGTGGTGTGC+TGG | 0.499832 | 1_3:+49644497 | None:intergenic |
| TTGTGGCCATCCTGCCAGAA+TGG | 0.501550 | 1_3:+49637674 | None:intergenic |
| CCCTGGCAAGGACTGAGGGC+TGG | 0.502421 | 1_3:-49640219 | Msa0122800:CDS |
| GTCAACACCCATCTTGGAAT+CGG | 0.505171 | 1_3:-49640513 | Msa0122800:intron |
| ATCATCATAAGTCCTATGTC+TGG | 0.505727 | 1_3:+49638194 | None:intergenic |
| CATATCGAGTTGAATTGTGT+TGG | 0.505789 | 1_3:+49637749 | None:intergenic |
| ATTGGTGGAAAGTTTAAACT+TGG | 0.508093 | 1_3:-49644059 | Msa0122800:CDS |
| TTGAATTCAGCCCTTGATTG+TGG | 0.510798 | 1_3:+49644114 | None:intergenic |
| AGAGGAGGTGGCTGTTAAGC+TGG | 0.511655 | 1_3:-49643870 | Msa0122800:intron |
| CAGGTGTATGCCATTGACTT+CGG | 0.512497 | 1_3:-49640915 | Msa0122800:CDS |
| AGAATTTGCGCGGTTCCTCT+GGG | 0.513807 | 1_3:+49638239 | None:intergenic |
| CTGGCAGGATGGCCACAAGT+GGG | 0.513957 | 1_3:-49637669 | Msa0122800:CDS |
| AGGGATGATCTGGAATCTCT+TGG | 0.515030 | 1_3:-49640357 | Msa0122800:CDS |
| GAAGGTATCAACTCCAATAG+AGG | 0.515426 | 1_3:-49640160 | Msa0122800:intron |
| GTCTTCCCTGGCAAGGACTG+AGG | 0.516641 | 1_3:-49640224 | Msa0122800:CDS |
| TCAATATCAAGAACAACAAA+GGG | 0.519549 | 1_3:+49644413 | None:intergenic |
| ATCAATATCAAGAACAACAA+AGG | 0.520586 | 1_3:+49644412 | None:intergenic |
| AATTGTCTGGCTTTATGTCT+CGG | 0.521040 | 1_3:+49643002 | None:intergenic |
| ATCACTTACCGATTCCAAGA+TGG | 0.522339 | 1_3:+49640505 | None:intergenic |
| TCCACTATTGCCGTTCGTTG+AGG | 0.522705 | 1_3:-49638868 | Msa0122800:CDS |
| CAGAGTAGTGGCAGCTCTAG+AGG | 0.523385 | 1_3:-49638643 | Msa0122800:CDS |
| TCACTTACCGATTCCAAGAT+GGG | 0.528445 | 1_3:+49640506 | None:intergenic |
| GGGCTGAATTCAATATTTGA+AGG | 0.528537 | 1_3:-49644104 | Msa0122800:five_prime_UTR |
| AGGCCCATCAGAAAATTGTC+TGG | 0.529417 | 1_3:+49642989 | None:intergenic |
| AACTCCAAACCATTTGAGGT+GGG | 0.533255 | 1_3:+49643282 | None:intergenic |
| TGGCAGGATGGCCACAAGTG+GGG | 0.534769 | 1_3:-49637668 | Msa0122800:CDS |
| CTCTATGTGCGCCAGATGGA+CGG | 0.535759 | 1_3:+49637644 | None:intergenic |
| CTTGATTTGCTTTACGTCCG+AGG | 0.536022 | 1_3:+49642969 | None:intergenic |
| TTGTAACGACAGCATGGCAC+TGG | 0.538838 | 1_3:-49638555 | Msa0122800:intron |
| TCAAGATTAAATGCAAATTG+GGG | 0.540099 | 1_3:+49644268 | None:intergenic |
| ATCATGGATCATGTGATTGG+TGG | 0.540398 | 1_3:-49644074 | Msa0122800:CDS |
| TTGAAACATCCTCATGAATG+AGG | 0.540842 | 1_3:+49644314 | None:intergenic |
| TATACAAACTGGAGAGGAGG+TGG | 0.543406 | 1_3:-49643882 | Msa0122800:CDS |
| AATCTTCTGAAGCAATCTGA+GGG | 0.543803 | 1_3:+49637353 | None:intergenic |
| TTGAATAAATCTTCCAGACT+GGG | 0.547330 | 1_3:+49643220 | None:intergenic |
| TGAATAATTCCTCATTCATG+AGG | 0.551215 | 1_3:-49644323 | Msa0122800:five_prime_UTR |
| TAATGTATTTCTTAAGAGGA+AGG | 0.552033 | 1_3:-49640326 | Msa0122800:intron |
| TAGTGGCAGCTCTAGAGGAC+GGG | 0.553447 | 1_3:-49638638 | Msa0122800:intron |
| TCTGGCAGGATGGCCACAAG+TGG | 0.554722 | 1_3:-49637670 | Msa0122800:CDS |
| GTAGTGGCAGCTCTAGAGGA+CGG | 0.557752 | 1_3:-49638639 | Msa0122800:CDS |
| GTTGAATACATGCATTCAAG+AGG | 0.558652 | 1_3:-49643034 | Msa0122800:CDS |
| TCATCAAAGCCAAATTCCTC+AGG | 0.559975 | 1_3:-49637700 | Msa0122800:CDS |
| GAATAAGGTAGGAAAAGAGA+AGG | 0.561006 | 1_3:+49644480 | None:intergenic |
| ATAAGGCTTCTTGAAATCCC+AGG | 0.563366 | 1_3:+49637465 | None:intergenic |
| CAACTCCAAACCATTTGAGG+TGG | 0.572196 | 1_3:+49643281 | None:intergenic |
| TCCAGGAATCTGTGAAGACC+AGG | 0.574379 | 1_3:-49643366 | Msa0122800:intron |
| CCTCAGGTGACCATTCTGGC+AGG | 0.574601 | 1_3:-49637684 | Msa0122800:CDS |
| TTCACAAGTTTGGAGATGAA+CGG | 0.574856 | 1_3:+49644546 | None:intergenic |
| AAATCTTCTGAAGCAATCTG+AGG | 0.574956 | 1_3:+49637352 | None:intergenic |
| AGGTGACCATTCTGGCAGGA+TGG | 0.577708 | 1_3:-49637680 | Msa0122800:CDS |
| ACTATCAGGAAGTAATCTCA+AGG | 0.579172 | 1_3:-49637526 | Msa0122800:exon |
| TGGTGTGTTCACCGTGATGA+GGG | 0.579905 | 1_3:+49638214 | None:intergenic |
| CTCATAGGCACATACCGTAC+AGG | 0.580718 | 1_3:-49640863 | Msa0122800:intron |
| AGACAGACTTACTAATTGAT+CGG | 0.581760 | 1_3:+49643153 | None:intergenic |
| CTTGGAAGGAAAATTGGGAG+TGG | 0.582542 | 1_3:-49644041 | Msa0122800:CDS |
| GGGGATCTAGAAATGATGTC+GGG | 0.584750 | 1_3:+49637373 | None:intergenic |
| CTTCCAGACTGGGTCCAAGA+AGG | 0.585280 | 1_3:+49643230 | None:intergenic |
| GATCACAAAACCAACCTGTA+CGG | 0.586380 | 1_3:+49640849 | None:intergenic |
| GGACAAATTCAAACAGAGGA+AGG | 0.587793 | 1_3:+49644135 | None:intergenic |
| GAGATTACTTCCTGATAGTG+AGG | 0.590566 | 1_3:+49637530 | None:intergenic |
| CCAGCCCTCAGTCCTTGCCA+GGG | 0.593406 | 1_3:+49640219 | None:intergenic |
| ACTCCAAACCATTTGAGGTG+GGG | 0.595250 | 1_3:+49643283 | None:intergenic |
| TGAACTCTATGTGCGCCAGA+TGG | 0.596034 | 1_3:+49637640 | None:intergenic |
| ATTTGGCTTTGATGATACCA+TGG | 0.597247 | 1_3:+49637708 | None:intergenic |
| TGGTGGCAGAACAAAGTCGA+AGG | 0.597531 | 1_3:-49640377 | Msa0122800:intron |
| GCTTGTTTCGTATCATACAC+AGG | 0.597643 | 1_3:+49637616 | None:intergenic |
| ACGGTGAACACACCAGACAT+AGG | 0.599179 | 1_3:-49638206 | Msa0122800:CDS |
| GCTCGCAATGGGTCTATGAG+AGG | 0.601655 | 1_3:-49637586 | Msa0122800:CDS |
| AGGGGATCTAGAAATGATGT+CGG | 0.602938 | 1_3:+49637372 | None:intergenic |
| CCGGAAATTCACTTTGAAGT+CGG | 0.603149 | 1_3:-49643188 | Msa0122800:CDS |
| CTGGTGTGTTCACCGTGATG+AGG | 0.605762 | 1_3:+49638213 | None:intergenic |
| AAATAATAATAATTCAGCAA+TGG | 0.606102 | 1_3:+49637038 | None:intergenic |
| AACGAATGATATGGTGCTGT+AGG | 0.611429 | 1_3:-49637116 | Msa0122800:three_prime_UTR |
| AGGAGCTCAAAGCTCCTCAG+AGG | 0.611695 | 1_3:+49637550 | None:intergenic |
| AGGAAAAGAGAAGGTATCTG+TGG | 0.614878 | 1_3:+49644489 | None:intergenic |
| ACATAGGACTTATGATGATG+TGG | 0.615199 | 1_3:-49638190 | Msa0122800:intron |
| ACGACAGCATGGCACTGGCA+AGG | 0.615258 | 1_3:-49638550 | Msa0122800:intron |
| ATATTAATGAATTACCATTG+AGG | 0.618281 | 1_3:-49637413 | Msa0122800:three_prime_UTR |
| TTGAAGTATCCACAGAGTAG+TGG | 0.619683 | 1_3:-49638655 | Msa0122800:CDS |
| TTTGACTCATAGTGAAGCTG+TGG | 0.620621 | 1_3:+49643340 | None:intergenic |
| CGATAAAATCAGTGAGACGA+AGG | 0.621170 | 1_3:-49640178 | Msa0122800:CDS |
| TGTCCTCAAACCTCAACGAA+CGG | 0.628598 | 1_3:+49638858 | None:intergenic |
| CTATCAGGAAGTAATCTCAA+GGG | 0.630386 | 1_3:-49637525 | Msa0122800:exon |
| TGGAGATGAACGGAGGAAGT+GGG | 0.631012 | 1_3:+49644556 | None:intergenic |
| TCATGCCATTGTGACCTCAA+TGG | 0.631482 | 1_3:+49637399 | None:intergenic |
| TGAGGGAGAGTACAATGTCA+TGG | 0.631924 | 1_3:-49643260 | Msa0122800:CDS |
| AAATAAGAACCTTACAGGCA+CGG | 0.632067 | 1_3:-49640550 | Msa0122800:CDS |
| GATGAGGGCTAGAATTTGCG+CGG | 0.634849 | 1_3:+49638229 | None:intergenic |
| TAATATACAAACTGGAGAGG+AGG | 0.635465 | 1_3:-49643885 | Msa0122800:CDS |
| TGTGGTGTGCTGGATGAAAG+AGG | 0.645151 | 1_3:+49644507 | None:intergenic |
| AAGCAGTTCAAGAAGAGCCA+TGG | 0.646616 | 1_3:-49637725 | Msa0122800:CDS |
| ACAGTGAATGTAGTTTAACA+AGG | 0.650280 | 1_3:-49637175 | Msa0122800:three_prime_UTR |
| CTAGAGCTGCCACTACTCTG+TGG | 0.650464 | 1_3:+49638646 | None:intergenic |
| TTGTGGACAAATTCAAACAG+AGG | 0.650537 | 1_3:+49644131 | None:intergenic |
| AAGTATGATACAAACTCAGA+GGG | 0.655305 | 1_3:+49638890 | None:intergenic |
| TGTTAATATACAAACTGGAG+AGG | 0.660638 | 1_3:-49643888 | Msa0122800:CDS |
| GAAGTATGATACAAACTCAG+AGG | 0.660966 | 1_3:+49638889 | None:intergenic |
| GGTGGCAGAACAAAGTCGAA+GGG | 0.669079 | 1_3:-49640376 | Msa0122800:intron |
| TTGTTGAAGCATTCACCCAG+AGG | 0.669158 | 1_3:-49638254 | Msa0122800:CDS |
| CAAGATTAAATGCAAATTGG+GGG | 0.673478 | 1_3:+49644269 | None:intergenic |
| AATTACCATTGAGGTCACAA+TGG | 0.674062 | 1_3:-49637404 | Msa0122800:three_prime_UTR |
| CCTGCCAGAATGGTCACCTG+AGG | 0.679602 | 1_3:+49637684 | None:intergenic |
| GCAAATTCTAGCCCTCATCA+CGG | 0.684087 | 1_3:-49638225 | Msa0122800:CDS |
| ACAAGTTTGGAGATGAACGG+AGG | 0.694451 | 1_3:+49644549 | None:intergenic |
| AGCTCCTCAGAGGATCATCA+CGG | 0.696325 | 1_3:+49637560 | None:intergenic |
| ATCTTCTGAAGCAATCTGAG+GGG | 0.701243 | 1_3:+49637354 | None:intergenic |
| GCCACCGTGATGATCCTCTG+AGG | 0.725239 | 1_3:-49637564 | Msa0122800:CDS |
| CTGTATATGATTCTTCAAGG+AGG | 0.728537 | 1_3:-49643316 | Msa0122800:CDS |
| TCCTCAGAGGATCATCACGG+TGG | 0.751052 | 1_3:+49637563 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTAAAAACAAAAAAAA+GGG | + | chr1_3:49637712-49637731 | None:intergenic | 10.0% |
| !! | ATGAATTAAAAACAAAAAAA+AGG | + | chr1_3:49637713-49637732 | None:intergenic | 10.0% |
| !!! | TTGTTTTTAATTCATTTATT+TGG | - | chr1_3:49637718-49637737 | Msa0122800:CDS | 10.0% |
| !!! | TGTTTTTAATTCATTTATTT+GGG | - | chr1_3:49637719-49637738 | Msa0122800:CDS | 10.0% |
| !! | TAATCATATATAGATAATTT+AGG | + | chr1_3:49638854-49638873 | None:intergenic | 10.0% |
| !! | ATTAAATATAAGAAAATCTT+GGG | - | chr1_3:49639112-49639131 | Msa0122800:intron | 10.0% |
| !! | CCATAAAATAAAATAAAAAA+TGG | + | chr1_3:49640627-49640646 | None:intergenic | 10.0% |
| !!! | CCATTTTTTATTTTATTTTA+TGG | - | chr1_3:49640624-49640643 | Msa0122800:intron | 10.0% |
| !! | AAATGAATTATTACATTATT+AGG | - | chr1_3:49641251-49641270 | Msa0122800:intron | 10.0% |
| !!! | TACTTTTCATTTTTAAATTA+CGG | - | chr1_3:49641805-49641824 | Msa0122800:intron | 10.0% |
| !!! | TTTATGAAAATAACATTTTA+GGG | + | chr1_3:49642672-49642691 | None:intergenic | 10.0% |
| !!! | TTTTATGAAAATAACATTTT+AGG | + | chr1_3:49642673-49642692 | None:intergenic | 10.0% |
| !!! | TTTTAGATTTGTAAATAAAA+CGG | + | chr1_3:49643732-49643751 | None:intergenic | 10.0% |
| !!! | TTTTATGAATTTCTAGAATT+TGG | - | chr1_3:49637895-49637914 | Msa0122800:intron | 15.0% |
| !!! | ATGTTTTAAATGTTAACTTT+TGG | - | chr1_3:49638046-49638065 | Msa0122800:intron | 15.0% |
| !! | ATTTATTCAATTATTGTAAC+CGG | - | chr1_3:49638480-49638499 | Msa0122800:intron | 15.0% |
| !! | TAATATGGTTCTTTATATAA+TGG | - | chr1_3:49638578-49638597 | Msa0122800:intron | 15.0% |
| !! | AAAACATAATAGCTTAAAAT+GGG | + | chr1_3:49638938-49638957 | None:intergenic | 15.0% |
| !! | AAAAACATAATAGCTTAAAA+TGG | + | chr1_3:49638939-49638958 | None:intergenic | 15.0% |
| !! | GATTAAATATAAGAAAATCT+TGG | - | chr1_3:49639111-49639130 | Msa0122800:intron | 15.0% |
| !! | TATTATATTGATATTGATAG+CGG | - | chr1_3:49639701-49639720 | Msa0122800:intron | 15.0% |
| !!! | TCATAGTAATATTTACTTTT+TGG | - | chr1_3:49640158-49640177 | Msa0122800:intron | 15.0% |
| !!! | CATAGTAATATTTACTTTTT+GGG | - | chr1_3:49640159-49640178 | Msa0122800:intron | 15.0% |
| !!! | TTTTATTTTATGGATGTTAT+AGG | - | chr1_3:49640634-49640653 | Msa0122800:intron | 15.0% |
| !! | CTAAAATATTATCTACATTT+AGG | + | chr1_3:49641022-49641041 | None:intergenic | 15.0% |
| !!! | ATATTTTTCACTAATCAATT+TGG | + | chr1_3:49642154-49642173 | None:intergenic | 15.0% |
| !! | AAAATGACTAATAAAAACTA+AGG | - | chr1_3:49642217-49642236 | Msa0122800:intron | 15.0% |
| !! | GATTATGTAATGTTATATTA+TGG | + | chr1_3:49642309-49642328 | None:intergenic | 15.0% |
| !! | ATCATCATACATTAATTATT+AGG | - | chr1_3:49642326-49642345 | Msa0122800:intron | 15.0% |
| !!! | TACTTTTCTTTTTCAAATTA+CGG | + | chr1_3:49642604-49642623 | None:intergenic | 15.0% |
| !!! | ATTTTTAATTGCTATGAATA+TGG | + | chr1_3:49644614-49644633 | None:intergenic | 15.0% |
| !! | AAATAATAATAATTCAGCAA+TGG | + | chr1_3:49644652-49644671 | None:intergenic | 15.0% |
| !!! | TTTTTTGGAAAAACAGAATA+AGG | + | chr1_3:49637225-49637244 | None:intergenic | 20.0% |
| !!! | TTCTTGATATTGATTATTCT+GGG | - | chr1_3:49637284-49637303 | Msa0122800:three_prime_UTR | 20.0% |
| !! | ATCAAGATTAAATGCAAATT+GGG | + | chr1_3:49637423-49637442 | None:intergenic | 20.0% |
| !! | AATCAAGATTAAATGCAAAT+TGG | + | chr1_3:49637424-49637443 | None:intergenic | 20.0% |
| !!! | TTAGATTGTGAATTTTTGTT+GGG | - | chr1_3:49637445-49637464 | Msa0122800:three_prime_UTR | 20.0% |
| !!! | GTTGATTTTTTTTTTCATGT+TGG | - | chr1_3:49637917-49637936 | Msa0122800:intron | 20.0% |
| !! | GATATTATCTGAACTATTTA+GGG | - | chr1_3:49637958-49637977 | Msa0122800:intron | 20.0% |
| !!! | TTTTTTTTGTTATCAGTTAG+TGG | - | chr1_3:49638232-49638251 | Msa0122800:CDS | 20.0% |
| !!! | AAGCTATTATGTTTTTTCTT+TGG | - | chr1_3:49638943-49638962 | Msa0122800:intron | 20.0% |
| !!! | ACAAGATTCTATCATTTTTT+CGG | + | chr1_3:49639530-49639549 | None:intergenic | 20.0% |
| !!! | TCTTTATTTATATCAAAGAC+AGG | + | chr1_3:49639925-49639944 | None:intergenic | 20.0% |
| !!! | TACAAAATGAAGTCTTTTAA+AGG | + | chr1_3:49640505-49640524 | None:intergenic | 20.0% |
| !! | AGCAATTATTAAGCAATATA+AGG | + | chr1_3:49640918-49640937 | None:intergenic | 20.0% |
| !! | AACTAAAACAATATCAAACT+TGG | - | chr1_3:49641050-49641069 | Msa0122800:intron | 20.0% |
| !! | CAAAATATATTGAGATCAAT+GGG | + | chr1_3:49641087-49641106 | None:intergenic | 20.0% |
| !! | ACAAAATATATTGAGATCAA+TGG | + | chr1_3:49641088-49641107 | None:intergenic | 20.0% |
| !!! | ATATTTTTCTTCTTTGCTTA+GGG | - | chr1_3:49641113-49641132 | Msa0122800:intron | 20.0% |
| !!! | GTTTCTTGTTTATTAGAAAT+TGG | - | chr1_3:49641650-49641669 | Msa0122800:intron | 20.0% |
| !!! | ATCCAAATTATTTAAGATGA+TGG | + | chr1_3:49641964-49641983 | None:intergenic | 20.0% |
| !!! | TAAAAACTAAGGTTTGTTTT+TGG | - | chr1_3:49642228-49642247 | Msa0122800:intron | 20.0% |
| !!! | TGAAGGTTTTGAATTAAAAT+GGG | + | chr1_3:49642279-49642298 | None:intergenic | 20.0% |
| !!! | TTGAAGGTTTTGAATTAAAA+TGG | + | chr1_3:49642280-49642299 | None:intergenic | 20.0% |
| !! | TATATTATGGAAAAACTTGA+AGG | + | chr1_3:49642296-49642315 | None:intergenic | 20.0% |
| !!! | TTACGTGCTTTTATAAAAAT+AGG | - | chr1_3:49642757-49642776 | Msa0122800:intron | 20.0% |
| !! | CTCTTTAAATATGAATAATC+TGG | + | chr1_3:49642857-49642876 | None:intergenic | 20.0% |
| !!! | TTGTTGTTTTACATTTTTGT+TGG | - | chr1_3:49643093-49643112 | Msa0122800:intron | 20.0% |
| !! | TTATGTGAAAAAACATGAAA+TGG | + | chr1_3:49643622-49643641 | None:intergenic | 20.0% |
| !! | ATATTTACAAATGGTAAACA+AGG | + | chr1_3:49643669-49643688 | None:intergenic | 20.0% |
| !! | CTAGTACAAATATTTACAAA+TGG | + | chr1_3:49643678-49643697 | None:intergenic | 20.0% |
| !!! | TGTTCTTCATTTCTAAATTT+TGG | - | chr1_3:49644195-49644214 | Msa0122800:five_prime_UTR | 20.0% |
| !! | ATATTAATGAATTACCATTG+AGG | - | chr1_3:49644274-49644293 | Msa0122800:five_prime_UTR | 20.0% |
| ! | TCAATATCAAGAACAACAAA+GGG | + | chr1_3:49637277-49637296 | None:intergenic | 25.0% |
| ! | ATCAATATCAAGAACAACAA+AGG | + | chr1_3:49637278-49637297 | None:intergenic | 25.0% |
| !! | GTTCTTGATATTGATTATTC+TGG | - | chr1_3:49637283-49637302 | Msa0122800:three_prime_UTR | 25.0% |
| ! | TCAAGATTAAATGCAAATTG+GGG | + | chr1_3:49637422-49637441 | None:intergenic | 25.0% |
| !! | GTTAGATTGTGAATTTTTGT+TGG | - | chr1_3:49637444-49637463 | Msa0122800:three_prime_UTR | 25.0% |
| !!! | GTTAGGATTTTTATTGATTC+AGG | - | chr1_3:49637489-49637508 | Msa0122800:three_prime_UTR | 25.0% |
| ! | CTGTTGAAAATCAATCAATT+TGG | - | chr1_3:49637521-49637540 | Msa0122800:exon | 25.0% |
| !! | ATTTGAAGGTGATTTTATCA+TGG | - | chr1_3:49637597-49637616 | Msa0122800:CDS | 25.0% |
| ! | TTTAAACTTGGAAGGAAAAT+TGG | - | chr1_3:49637640-49637659 | Msa0122800:CDS | 25.0% |
| ! | TTAAACTTGGAAGGAAAATT+GGG | - | chr1_3:49637641-49637660 | Msa0122800:CDS | 25.0% |
| !!! | TTGGTTCTAGATGTATTATT+AGG | - | chr1_3:49637936-49637955 | Msa0122800:intron | 25.0% |
| ! | GGATATTATCTGAACTATTT+AGG | - | chr1_3:49637957-49637976 | Msa0122800:intron | 25.0% |
| ! | ATATCATTTATCGAAGGAAA+TGG | - | chr1_3:49638015-49638034 | Msa0122800:intron | 25.0% |
| !! | AATGTTAACTTTTGGTCAAT+AGG | - | chr1_3:49638054-49638073 | Msa0122800:intron | 25.0% |
| ! | AAACTGTATATGATTCTTCA+AGG | - | chr1_3:49638368-49638387 | Msa0122800:intron | 25.0% |
| ! | TTGGCGAAAGTTATTTAATA+TGG | - | chr1_3:49638563-49638582 | Msa0122800:intron | 25.0% |
| !! | AAAAAACAAACAAAAGTGTG+AGG | + | chr1_3:49638621-49638640 | None:intergenic | 25.0% |
| ! | TTTAATTCCTTTGTCTATTG+TGG | - | chr1_3:49638782-49638801 | Msa0122800:intron | 25.0% |
| ! | TTAATTCCTTTGTCTATTGT+GGG | - | chr1_3:49638783-49638802 | Msa0122800:intron | 25.0% |
| ! | ACCTAGAAAAGAATTATGAT+AGG | - | chr1_3:49638880-49638899 | Msa0122800:CDS | 25.0% |
| ! | CCTAGAAAAGAATTATGATA+GGG | - | chr1_3:49638881-49638900 | Msa0122800:CDS | 25.0% |
| !! | TGTCATATATTTTCTTGTGT+GGG | - | chr1_3:49639004-49639023 | Msa0122800:intron | 25.0% |
| ! | AGAGTCTAAATAGGAATAAA+TGG | - | chr1_3:49639045-49639064 | Msa0122800:intron | 25.0% |
| ! | TTCAGTTATTTGTGTTTGAA+AGG | - | chr1_3:49639327-49639346 | Msa0122800:intron | 25.0% |
| !!! | AACATCAACTTTTTTTACCA+GGG | + | chr1_3:49639579-49639598 | None:intergenic | 25.0% |
| !!! | TAACATCAACTTTTTTTACC+AGG | + | chr1_3:49639580-49639599 | None:intergenic | 25.0% |
| !!! | AACTTAGGATTTTAAAGGAA+AGG | + | chr1_3:49640083-49640102 | None:intergenic | 25.0% |
| ! | ATGAAAATAAGCAAAATGAC+TGG | + | chr1_3:49640108-49640127 | None:intergenic | 25.0% |
| !! | TATTTTCATATCACGTCTAT+TGG | - | chr1_3:49640119-49640138 | Msa0122800:intron | 25.0% |
| !!! | AGTAATATTTACTTTTTGGG+AGG | - | chr1_3:49640162-49640181 | Msa0122800:CDS | 25.0% |
| !!! | GTAATATTTACTTTTTGGGA+GGG | - | chr1_3:49640163-49640182 | Msa0122800:CDS | 25.0% |
| ! | TCAGTTTATTAATTTCATCG+TGG | - | chr1_3:49640375-49640394 | Msa0122800:intron | 25.0% |
| ! | ATGTTATAATTAGCACTGTA+TGG | + | chr1_3:49640409-49640428 | None:intergenic | 25.0% |
| !!! | AGTCTTTTAAAGGATACAAA+CGG | + | chr1_3:49640495-49640514 | None:intergenic | 25.0% |
| !! | AAAGCAATTGGTTTCTTTAA+GGG | - | chr1_3:49640540-49640559 | Msa0122800:CDS | 25.0% |
| !!! | CAGTCGATTATATTTAGTTT+TGG | + | chr1_3:49640727-49640746 | None:intergenic | 25.0% |
| !!! | GGTTTTGTGATCATAATTTT+AGG | - | chr1_3:49640849-49640868 | Msa0122800:intron | 25.0% |
| !! | TTTGTGATCATAATTTTAGG+AGG | - | chr1_3:49640852-49640871 | Msa0122800:intron | 25.0% |
| !!! | TTGTGATCATAATTTTAGGA+GGG | - | chr1_3:49640853-49640872 | Msa0122800:intron | 25.0% |
| ! | TTAGGTTAAGCTAAACAATT+AGG | - | chr1_3:49640883-49640902 | Msa0122800:CDS | 25.0% |
| !!! | TGTTATGCCATTTTTTTTAC+TGG | - | chr1_3:49640987-49641006 | Msa0122800:intron | 25.0% |
| ! | GTGATTTCCAGTAAAAAAAA+TGG | + | chr1_3:49640997-49641016 | None:intergenic | 25.0% |
| !! | GATATTTTTCTTCTTTGCTT+AGG | - | chr1_3:49641112-49641131 | Msa0122800:intron | 25.0% |
| ! | ATATACTAATTGTGTGATTG+TGG | - | chr1_3:49641290-49641309 | Msa0122800:intron | 25.0% |
| ! | TAATGTATTTCTTAAGAGGA+AGG | - | chr1_3:49641361-49641380 | Msa0122800:intron | 25.0% |
| ! | AGCCATCATCTTAAATAATT+TGG | - | chr1_3:49641959-49641978 | Msa0122800:intron | 25.0% |
| !!! | CATTTTGGTCTCTAAATATA+TGG | - | chr1_3:49642047-49642066 | Msa0122800:intron | 25.0% |
| ! | AAGCAACTTTCAAAAATTAG+TGG | - | chr1_3:49642507-49642526 | Msa0122800:intron | 25.0% |
| ! | AGCAACTTTCAAAAATTAGT+GGG | - | chr1_3:49642508-49642527 | Msa0122800:intron | 25.0% |
| ! | AATAAATTAAGTGTGATCAG+TGG | + | chr1_3:49642559-49642578 | None:intergenic | 25.0% |
| !! | TGCATTTTCCACATTATTTT+GGG | + | chr1_3:49642917-49642936 | None:intergenic | 25.0% |
| !! | ATGCATTTTCCACATTATTT+TGG | + | chr1_3:49642918-49642937 | None:intergenic | 25.0% |
| !! | AGTATATTTTGCTGGAAATT+CGG | - | chr1_3:49642940-49642959 | Msa0122800:intron | 25.0% |
| !!! | AATTTGACTATGTTTTTGAC+TGG | - | chr1_3:49643003-49643022 | Msa0122800:CDS | 25.0% |
| ! | AGCTGAATAAGAATGAAATT+CGG | - | chr1_3:49643222-49643241 | Msa0122800:CDS | 25.0% |
| ! | GGTAAACAAGGTAAAAAAAA+GGG | + | chr1_3:49643657-49643676 | None:intergenic | 25.0% |
| ! | TGGTAAACAAGGTAAAAAAA+AGG | + | chr1_3:49643658-49643677 | None:intergenic | 25.0% |
| !!! | ATCTTTTGTTTCTTTCCATA+AGG | + | chr1_3:49644242-49644261 | None:intergenic | 25.0% |
| !! | AAACAAAAGATTCAAGTTCA+TGG | - | chr1_3:49644251-49644270 | Msa0122800:five_prime_UTR | 25.0% |
| !! | ATTTAAAGCAACGAATGATA+TGG | - | chr1_3:49644562-49644581 | Msa0122800:five_prime_UTR | 25.0% |
| CAAAAGTAGTTTCACAAGTT+TGG | + | chr1_3:49637154-49637173 | None:intergenic | 30.0% | |
| TTGGAAAAACAGAATAAGGT+AGG | + | chr1_3:49637221-49637240 | None:intergenic | 30.0% | |
| !! | ATTGATTATTCTGGGATGAT+TGG | - | chr1_3:49637292-49637311 | Msa0122800:three_prime_UTR | 30.0% |
| !!! | ATGATTGGTTTTGGTTCTTT+TGG | - | chr1_3:49637307-49637326 | Msa0122800:three_prime_UTR | 30.0% |
| !!! | TGATTGGTTTTGGTTCTTTT+GGG | - | chr1_3:49637308-49637327 | Msa0122800:three_prime_UTR | 30.0% |
| TGAATAATTCCTCATTCATG+AGG | - | chr1_3:49637364-49637383 | Msa0122800:three_prime_UTR | 30.0% | |
| CAAGATTAAATGCAAATTGG+GGG | + | chr1_3:49637421-49637440 | None:intergenic | 30.0% | |
| ! | TTGTGAATTTTTGTTGGGTT+TGG | - | chr1_3:49637450-49637469 | Msa0122800:three_prime_UTR | 30.0% |
| !! | GTGAATTTTGGAAGAAAGTT+AGG | - | chr1_3:49637472-49637491 | Msa0122800:three_prime_UTR | 30.0% |
| TTTGAATTTGTCCACAATCA+AGG | - | chr1_3:49637562-49637581 | Msa0122800:CDS | 30.0% | |
| TTGAATTTGTCCACAATCAA+GGG | - | chr1_3:49637563-49637582 | Msa0122800:CDS | 30.0% | |
| TTTATCATGGATCATGTGAT+TGG | - | chr1_3:49637610-49637629 | Msa0122800:CDS | 30.0% | |
| ATTGGTGGAAAGTTTAAACT+TGG | - | chr1_3:49637628-49637647 | Msa0122800:CDS | 30.0% | |
| TCAGCTGTTAATATACAAAC+TGG | - | chr1_3:49637794-49637813 | Msa0122800:intron | 30.0% | |
| TGTTAATATACAAACTGGAG+AGG | - | chr1_3:49637799-49637818 | Msa0122800:intron | 30.0% | |
| TCTTGAAATGAGATGTGAAA+TGG | - | chr1_3:49638089-49638108 | Msa0122800:intron | 30.0% | |
| !! | TTTTTGTTATCAGTTAGTGG+TGG | - | chr1_3:49638235-49638254 | Msa0122800:CDS | 30.0% |
| TTGAATAAATCTTCCAGACT+GGG | + | chr1_3:49638470-49638489 | None:intergenic | 30.0% | |
| ATTGAATAAATCTTCCAGAC+TGG | + | chr1_3:49638471-49638490 | None:intergenic | 30.0% | |
| AGACAGACTTACTAATTGAT+CGG | + | chr1_3:49638537-49638556 | None:intergenic | 30.0% | |
| ! | CCTCTATCAAACTTTTCAAA+AGG | + | chr1_3:49638818-49638837 | None:intergenic | 30.0% |
| !! | CCTTTTGAAAAGTTTGATAG+AGG | - | chr1_3:49638815-49638834 | Msa0122800:CDS | 30.0% |
| AAAAGTTTGATAGAGGAGTA+TGG | - | chr1_3:49638822-49638841 | Msa0122800:CDS | 30.0% | |
| ! | AAAGTTTGATAGAGGAGTAT+GGG | - | chr1_3:49638823-49638842 | Msa0122800:CDS | 30.0% |
| ! | CCCTATCATAATTCTTTTCT+AGG | + | chr1_3:49638884-49638903 | None:intergenic | 30.0% |
| CTATAGACAAGTATAACACA+TGG | - | chr1_3:49638907-49638926 | Msa0122800:CDS | 30.0% | |
| ! | CTGTCATATATTTTCTTGTG+TGG | - | chr1_3:49639003-49639022 | Msa0122800:intron | 30.0% |
| CATAGTTGAAGAGTCTAAAT+AGG | - | chr1_3:49639036-49639055 | Msa0122800:intron | 30.0% | |
| GTATGACCTGAATATTAAGA+GGG | - | chr1_3:49639166-49639185 | Msa0122800:intron | 30.0% | |
| TATGACCTGAATATTAAGAG+GGG | - | chr1_3:49639167-49639186 | Msa0122800:intron | 30.0% | |
| ATATTCCCCTCTTAATATTC+AGG | + | chr1_3:49639175-49639194 | None:intergenic | 30.0% | |
| GAATATTAAGAGGGGAATAT+TGG | - | chr1_3:49639175-49639194 | Msa0122800:intron | 30.0% | |
| TGGAGAAAGATATAAATCGT+AGG | - | chr1_3:49639272-49639291 | Msa0122800:intron | 30.0% | |
| ! | ATTTCCTTCAAACTTTTGAG+AGG | + | chr1_3:49639355-49639374 | None:intergenic | 30.0% |
| ! | TTTAGAGATGAGAATTTTGC+AGG | - | chr1_3:49639402-49639421 | Msa0122800:intron | 30.0% |
| ! | TTAGAGATGAGAATTTTGCA+GGG | - | chr1_3:49639403-49639422 | Msa0122800:intron | 30.0% |
| GAAAAGATATGATTGTGCAA+TGG | - | chr1_3:49639443-49639462 | Msa0122800:intron | 30.0% | |
| ! | TAGTTTTTGACAGAATGCAA+CGG | - | chr1_3:49639840-49639859 | Msa0122800:intron | 30.0% |
| !!! | CATTTGATTCGTGGTTTTAA+TGG | - | chr1_3:49639866-49639885 | Msa0122800:intron | 30.0% |
| !! | GTTTTAATGGTTGTGTAGTT+TGG | - | chr1_3:49639879-49639898 | Msa0122800:intron | 30.0% |
| ! | TTGTGTAGTTTGGATGATTT+TGG | - | chr1_3:49639889-49639908 | Msa0122800:intron | 30.0% |
| TACCCATTATAATGAGTCTT+CGG | - | chr1_3:49639947-49639966 | Msa0122800:intron | 30.0% | |
| ATGACATCAAAATACAAGCT+TGG | - | chr1_3:49639976-49639995 | Msa0122800:intron | 30.0% | |
| TGGTTGAGTAACATTTGAAT+TGG | - | chr1_3:49639996-49640015 | Msa0122800:intron | 30.0% | |
| ! | TGGTGAACTTAGGATTTTAA+AGG | + | chr1_3:49640088-49640107 | None:intergenic | 30.0% |
| CAACTCAACATTATACTCAA+GGG | + | chr1_3:49640285-49640304 | None:intergenic | 30.0% | |
| TATAATTAGCACTGTATGGT+TGG | + | chr1_3:49640405-49640424 | None:intergenic | 30.0% | |
| ! | CAAAGCAATTGGTTTCTTTA+AGG | - | chr1_3:49640539-49640558 | Msa0122800:CDS | 30.0% |
| GTGCTAATGTATTTCTTAAG+AGG | - | chr1_3:49641357-49641376 | Msa0122800:intron | 30.0% | |
| CAAGTCATAATTACCTCTAT+TGG | + | chr1_3:49641543-49641562 | None:intergenic | 30.0% | |
| AAAAAAAAACTGACAGATGC+AGG | + | chr1_3:49641570-49641589 | None:intergenic | 30.0% | |
| AATATTTCAATCACACTCAG+TGG | - | chr1_3:49641885-49641904 | Msa0122800:intron | 30.0% | |
| GATGTACAATACTAACTTAG+AGG | - | chr1_3:49642003-49642022 | Msa0122800:intron | 30.0% | |
| AAGCATTCCTAAAGATGTTA+TGG | + | chr1_3:49642415-49642434 | None:intergenic | 30.0% | |
| ! | ATAACATCTTTAGGAATGCT+TGG | - | chr1_3:49642414-49642433 | Msa0122800:intron | 30.0% |
| GCAACTTTCAAAAATTAGTG+GGG | - | chr1_3:49642509-49642528 | Msa0122800:intron | 30.0% | |
| !!! | ATAACATTTTAGGGTGTGTT+TGG | + | chr1_3:49642663-49642682 | None:intergenic | 30.0% |
| ! | AGATTTTACATGAGACAGAA+GGG | + | chr1_3:49642711-49642730 | None:intergenic | 30.0% |
| ! | AAGATTTTACATGAGACAGA+AGG | + | chr1_3:49642712-49642731 | None:intergenic | 30.0% |
| AAGTATGATACAAACTCAGA+GGG | + | chr1_3:49642800-49642819 | None:intergenic | 30.0% | |
| ACATACCTTCTCGAATAAAA+AGG | + | chr1_3:49642892-49642911 | None:intergenic | 30.0% | |
| GTATGTTACCCAAAATAATG+TGG | - | chr1_3:49642906-49642925 | Msa0122800:intron | 30.0% | |
| ! | ATGCATTCAGTATATTTTGC+TGG | - | chr1_3:49642932-49642951 | Msa0122800:intron | 30.0% |
| ! | ATCTTTTGTGCTTTATGTAC+TGG | + | chr1_3:49643183-49643202 | None:intergenic | 30.0% |
| ! | TTCATGCTATTTGTTTCAGT+TGG | - | chr1_3:49643378-49643397 | Msa0122800:intron | 30.0% |
| ! | TCATGCTATTTGTTTCAGTT+GGG | - | chr1_3:49643379-49643398 | Msa0122800:intron | 30.0% |
| !! | ATATCGAGTTGAATTGTGTT+GGG | + | chr1_3:49643940-49643959 | None:intergenic | 30.0% |
| ! | TGGATATGCAATGTTATTTG+TGG | - | chr1_3:49644469-49644488 | Msa0122800:five_prime_UTR | 30.0% |
| ACAGTGAATGTAGTTTAACA+AGG | - | chr1_3:49644512-49644531 | Msa0122800:five_prime_UTR | 30.0% | |
| TTCACAAGTTTGGAGATGAA+CGG | + | chr1_3:49637144-49637163 | None:intergenic | 35.0% | |
| GAATAAGGTAGGAAAAGAGA+AGG | + | chr1_3:49637210-49637229 | None:intergenic | 35.0% | |
| !!! | TATTCTGGGATGATTGGTTT+TGG | - | chr1_3:49637298-49637317 | Msa0122800:three_prime_UTR | 35.0% |
| !!! | GATTGGTTTTGGTTCTTTTG+GGG | - | chr1_3:49637309-49637328 | Msa0122800:three_prime_UTR | 35.0% |
| TTGAAACATCCTCATGAATG+AGG | + | chr1_3:49637376-49637395 | None:intergenic | 35.0% | |
| !!! | TTGTTGGGTTTGGTGAATTT+TGG | - | chr1_3:49637460-49637479 | Msa0122800:three_prime_UTR | 35.0% |
| TTGTGGACAAATTCAAACAG+AGG | + | chr1_3:49637559-49637578 | None:intergenic | 35.0% | |
| GGGCTGAATTCAATATTTGA+AGG | - | chr1_3:49637583-49637602 | Msa0122800:CDS | 35.0% | |
| GTGGAAAGTTTAAACTTGGA+AGG | - | chr1_3:49637632-49637651 | Msa0122800:CDS | 35.0% | |
| ! | AAAATTGGGAGTGGTTCTTT+TGG | - | chr1_3:49637655-49637674 | Msa0122800:CDS | 35.0% |
| !! | TCTTTTGGAGAGCTCTATTT+AGG | - | chr1_3:49637670-49637689 | Msa0122800:CDS | 35.0% |
| TAATATACAAACTGGAGAGG+AGG | - | chr1_3:49637802-49637821 | Msa0122800:intron | 35.0% | |
| CTTGCGATATCATTTATCGA+AGG | - | chr1_3:49638009-49638028 | Msa0122800:intron | 35.0% | |
| ! | GTTAACTTTTGGTCAATAGG+TGG | - | chr1_3:49638057-49638076 | Msa0122800:intron | 35.0% |
| TCCAATTTCCAATTGTCTCA+CGG | - | chr1_3:49638283-49638302 | Msa0122800:CDS | 35.0% | |
| GGTTCTGTCAAAAATATTCC+AGG | - | chr1_3:49638304-49638323 | Msa0122800:intron | 35.0% | |
| CTGTATATGATTCTTCAAGG+AGG | - | chr1_3:49638371-49638390 | Msa0122800:intron | 35.0% | |
| GTTGAATACATGCATTCAAG+AGG | - | chr1_3:49638653-49638672 | Msa0122800:CDS | 35.0% | |
| !! | AATTGTCTGGCTTTATGTCT+CGG | + | chr1_3:49638688-49638707 | None:intergenic | 35.0% |
| ! | AAAGCCAGACAATTTTCTGA+TGG | - | chr1_3:49638694-49638713 | Msa0122800:intron | 35.0% |
| ! | AAGCCAGACAATTTTCTGAT+GGG | - | chr1_3:49638695-49638714 | Msa0122800:intron | 35.0% |
| ATTGAACCCACAATAGACAA+AGG | + | chr1_3:49638792-49638811 | None:intergenic | 35.0% | |
| AGACAAGTATAACACATGGT+AGG | - | chr1_3:49638911-49638930 | Msa0122800:CDS | 35.0% | |
| GACAAGTATAACACATGGTA+GGG | - | chr1_3:49638912-49638931 | Msa0122800:intron | 35.0% | |
| ATGTTCTTACTAGCATATCC+AGG | - | chr1_3:49638972-49638991 | Msa0122800:intron | 35.0% | |
| !! | ATTTTCTTGTGTGGGTTGTA+TGG | - | chr1_3:49639012-49639031 | Msa0122800:intron | 35.0% |
| GGTATGACCTGAATATTAAG+AGG | - | chr1_3:49639165-49639184 | Msa0122800:intron | 35.0% | |
| TATTAAGAGGGGAATATTGG+AGG | - | chr1_3:49639178-49639197 | Msa0122800:intron | 35.0% | |
| CATATTAATGCCACAACACA+AGG | - | chr1_3:49639202-49639221 | Msa0122800:intron | 35.0% | |
| CTTGGTATGATAGATTCAAG+GGG | + | chr1_3:49639241-49639260 | None:intergenic | 35.0% | |
| GCTTGGTATGATAGATTCAA+GGG | + | chr1_3:49639242-49639261 | None:intergenic | 35.0% | |
| ! | TTCAAGTGAGTTGGATGAAA+TGG | - | chr1_3:49639296-49639315 | Msa0122800:intron | 35.0% |
| AAACACTTGACTTCTCTTGT+TGG | + | chr1_3:49639384-49639403 | None:intergenic | 35.0% | |
| ! | TAGAGATGAGAATTTTGCAG+GGG | - | chr1_3:49639404-49639423 | Msa0122800:intron | 35.0% |
| ! | TGTAAATTCGTAGTCTTGAC+AGG | + | chr1_3:49639476-49639495 | None:intergenic | 35.0% |
| ! | TGTTTTTCCTACTCTCTCTT+GGG | + | chr1_3:49639500-49639519 | None:intergenic | 35.0% |
| AGAATCTTGTCTAACATGTG+AGG | - | chr1_3:49639540-49639559 | Msa0122800:intron | 35.0% | |
| TGCTTGATTGCACTATGTAA+CGG | + | chr1_3:49639761-49639780 | None:intergenic | 35.0% | |
| TGCCGAAGACTCATTATAAT+GGG | + | chr1_3:49639952-49639971 | None:intergenic | 35.0% | |
| ATGCCGAAGACTCATTATAA+TGG | + | chr1_3:49639953-49639972 | None:intergenic | 35.0% | |
| GAAAAACTCAAGGACAAACA+TGG | + | chr1_3:49640035-49640054 | None:intergenic | 35.0% | |
| GAGTACTCTTGAAAAACTCA+AGG | + | chr1_3:49640045-49640064 | None:intergenic | 35.0% | |
| AGCGTAAGTCATTGAACTAA+AGG | + | chr1_3:49640198-49640217 | None:intergenic | 35.0% | |
| TTTCCTAAATTTGTCGTGCA+GGG | + | chr1_3:49640251-49640270 | None:intergenic | 35.0% | |
| ATTTCCTAAATTTGTCGTGC+AGG | + | chr1_3:49640252-49640271 | None:intergenic | 35.0% | |
| CCAACTCAACATTATACTCA+AGG | + | chr1_3:49640286-49640305 | None:intergenic | 35.0% | |
| CCTTGAGTATAATGTTGAGT+TGG | - | chr1_3:49640283-49640302 | Msa0122800:intron | 35.0% | |
| ! | TTTGACATGTGCACACATTT+TGG | - | chr1_3:49640328-49640347 | Msa0122800:CDS | 35.0% |
| ! | CATTTTATCGTGTTAACGCT+AGG | + | chr1_3:49640458-49640477 | None:intergenic | 35.0% |
| GGATACAAACGGTTAAGTTT+AGG | + | chr1_3:49640484-49640503 | None:intergenic | 35.0% | |
| ! | TCATTTTGTAGTCTCCTTGT+TGG | - | chr1_3:49640515-49640534 | Msa0122800:CDS | 35.0% |
| ! | CAATTGGTTTCTTTAAGGGT+GGG | - | chr1_3:49640544-49640563 | Msa0122800:CDS | 35.0% |
| !!! | GATCCCTATATTTTTTCGCA+AGG | + | chr1_3:49640798-49640817 | None:intergenic | 35.0% |
| !! | TTTTAGGAGGGAGCAATATT+AGG | - | chr1_3:49640865-49640884 | Msa0122800:CDS | 35.0% |
| TGAGATCAATGGGAATTTGT+GGG | + | chr1_3:49641077-49641096 | None:intergenic | 35.0% | |
| TTGAGATCAATGGGAATTTG+TGG | + | chr1_3:49641078-49641097 | None:intergenic | 35.0% | |
| AGGGAAAATAAGAACCTTAC+AGG | - | chr1_3:49641132-49641151 | Msa0122800:intron | 35.0% | |
| AAATAAGAACCTTACAGGCA+CGG | - | chr1_3:49641137-49641156 | Msa0122800:intron | 35.0% | |
| ! | CGGTAAGTGATATTTTATGC+TGG | - | chr1_3:49641194-49641213 | Msa0122800:intron | 35.0% |
| !! | ATGCTGGTTTGTTACTTTCT+CGG | - | chr1_3:49641210-49641229 | Msa0122800:intron | 35.0% |
| TACTAATTGTGTGATTGTGG+TGG | - | chr1_3:49641293-49641312 | Msa0122800:intron | 35.0% | |
| ATGCAATAGTGCTCAATAAC+TGG | + | chr1_3:49641630-49641649 | None:intergenic | 35.0% | |
| CAGTTGAATGCAGGAAATAT+AGG | + | chr1_3:49641723-49641742 | None:intergenic | 35.0% | |
| CATTCAACTGTTAGCACTTA+GGG | - | chr1_3:49641733-49641752 | Msa0122800:intron | 35.0% | |
| TAGCCAGAAACTTTGAATAG+TGG | - | chr1_3:49641910-49641929 | Msa0122800:intron | 35.0% | |
| AGCCAGAAACTTTGAATAGT+GGG | - | chr1_3:49641911-49641930 | Msa0122800:intron | 35.0% | |
| !! | AGCCAAGCGTTTTTGTTTAA+AGG | - | chr1_3:49642387-49642406 | Msa0122800:intron | 35.0% |
| AGCCTTTAAACAAAAACGCT+TGG | + | chr1_3:49642392-49642411 | None:intergenic | 35.0% | |
| AAAGGCTCCATAACATCTTT+AGG | - | chr1_3:49642405-49642424 | Msa0122800:intron | 35.0% | |
| AAATTAAGTGTGATCAGTGG+CGG | + | chr1_3:49642556-49642575 | None:intergenic | 35.0% | |
| GAAGTATGATACAAACTCAG+AGG | + | chr1_3:49642801-49642820 | None:intergenic | 35.0% | |
| CTTCTCGAATAAAAAGGTCT+CGG | + | chr1_3:49642886-49642905 | None:intergenic | 35.0% | |
| ! | ATATTTTGCTGGAAATTCGG+TGG | - | chr1_3:49642943-49642962 | Msa0122800:intron | 35.0% |
| CATAAAGCACAAAAGATTCC+AGG | - | chr1_3:49643186-49643205 | Msa0122800:CDS | 35.0% | |
| ATCATCATAAGTCCTATGTC+TGG | + | chr1_3:49643496-49643515 | None:intergenic | 35.0% | |
| ! | ACATAGGACTTATGATGATG+TGG | - | chr1_3:49643497-49643516 | Msa0122800:intron | 35.0% |
| !! | TGAGAATGTTGTTTCCTGTT+TGG | - | chr1_3:49643574-49643593 | Msa0122800:intron | 35.0% |
| !! | CATATCGAGTTGAATTGTGT+TGG | + | chr1_3:49643941-49643960 | None:intergenic | 35.0% |
| CAACACAATTCAACTCGATA+TGG | - | chr1_3:49643939-49643958 | Msa0122800:intron | 35.0% | |
| !! | ATTTGGCTTTGATGATACCA+TGG | + | chr1_3:49643982-49644001 | None:intergenic | 35.0% |
| ACTATCAGGAAGTAATCTCA+AGG | - | chr1_3:49644161-49644180 | Msa0122800:five_prime_UTR | 35.0% | |
| CTATCAGGAAGTAATCTCAA+GGG | - | chr1_3:49644162-49644181 | Msa0122800:five_prime_UTR | 35.0% | |
| !! | TTTCTAAATTTTGGCACACC+TGG | - | chr1_3:49644204-49644223 | Msa0122800:five_prime_UTR | 35.0% |
| !! | TTCTAAATTTTGGCACACCT+GGG | - | chr1_3:49644205-49644224 | Msa0122800:five_prime_UTR | 35.0% |
| AATTACCATTGAGGTCACAA+TGG | - | chr1_3:49644283-49644302 | Msa0122800:five_prime_UTR | 35.0% | |
| !! | AATCTTCTGAAGCAATCTGA+GGG | + | chr1_3:49644337-49644356 | None:intergenic | 35.0% |
| !! | AAATCTTCTGAAGCAATCTG+AGG | + | chr1_3:49644338-49644357 | None:intergenic | 35.0% |
| !! | TTGAGTTGTAGCAAGTTTTG+TGG | - | chr1_3:49644449-49644468 | Msa0122800:five_prime_UTR | 35.0% |
| !! | AGGAAAAGAGAAGGTATCTG+TGG | + | chr1_3:49637201-49637220 | None:intergenic | 40.0% |
| !!! | TTTTGGTTCTTTTGGGGTGA+AGG | - | chr1_3:49637315-49637334 | Msa0122800:three_prime_UTR | 40.0% |
| GGACAAATTCAAACAGAGGA+AGG | + | chr1_3:49637555-49637574 | None:intergenic | 40.0% | |
| TTGAATTCAGCCCTTGATTG+TGG | + | chr1_3:49637576-49637595 | None:intergenic | 40.0% | |
| ATCATGGATCATGTGATTGG+TGG | - | chr1_3:49637613-49637632 | Msa0122800:CDS | 40.0% | |
| TTGGTCAATAGGTGGATGAT+TGG | - | chr1_3:49638065-49638084 | Msa0122800:intron | 40.0% | |
| AGCTGCAAAACAGAATTGTG+AGG | + | chr1_3:49638129-49638148 | None:intergenic | 40.0% | |
| ACCGTGAGACAATTGGAAAT+TGG | + | chr1_3:49638287-49638306 | None:intergenic | 40.0% | |
| TTTGACTCATAGTGAAGCTG+TGG | + | chr1_3:49638350-49638369 | None:intergenic | 40.0% | |
| ATGATTCTTCAAGGAGGAAC+TGG | - | chr1_3:49638377-49638396 | Msa0122800:intron | 40.0% | |
| ! | AACTCCAAACCATTTGAGGT+GGG | + | chr1_3:49638408-49638427 | None:intergenic | 40.0% |
| ! | CTCAAATGGTTTGGAGTTGA+GGG | - | chr1_3:49638410-49638429 | Msa0122800:intron | 40.0% |
| CCGACTTCAAAGTGAATTTC+CGG | + | chr1_3:49638502-49638521 | None:intergenic | 40.0% | |
| !! | CCGGAAATTCACTTTGAAGT+CGG | - | chr1_3:49638499-49638518 | Msa0122800:intron | 40.0% |
| AGTAAGTCTGTCTGTCAAGT+TGG | - | chr1_3:49638544-49638563 | Msa0122800:CDS | 40.0% | |
| TTCTTACTAGCATATCCAGG+AGG | - | chr1_3:49638975-49638994 | Msa0122800:intron | 40.0% | |
| ! | ACATTTGTTGAGTCCCACAT+TGG | - | chr1_3:49639138-49639157 | Msa0122800:intron | 40.0% |
| GGTCATACCATATCCAATGT+GGG | + | chr1_3:49639154-49639173 | None:intergenic | 40.0% | |
| AGGTCATACCATATCCAATG+TGG | + | chr1_3:49639155-49639174 | None:intergenic | 40.0% | |
| CGCTTGGTATGATAGATTCA+AGG | + | chr1_3:49639243-49639262 | None:intergenic | 40.0% | |
| ATCGTAGGATTCAAGTGAGT+TGG | - | chr1_3:49639287-49639306 | Msa0122800:intron | 40.0% | |
| GGTACCTCTCAAAAGTTTGA+AGG | - | chr1_3:49639348-49639367 | Msa0122800:intron | 40.0% | |
| TTTACAACCCAAGAGAGAGT+AGG | - | chr1_3:49639490-49639509 | Msa0122800:intron | 40.0% | |
| ! | GTGTTTTTCCTACTCTCTCT+TGG | + | chr1_3:49639501-49639520 | None:intergenic | 40.0% |
| ! | CTGTTGCTCAGTTCTTTTCA+AGG | + | chr1_3:49639607-49639626 | None:intergenic | 40.0% |
| TCAAGGACAAACATGGAAAC+AGG | + | chr1_3:49640028-49640047 | None:intergenic | 40.0% | |
| !! | GGATTTTAAAGGAAAGGTCC+AGG | + | chr1_3:49640077-49640096 | None:intergenic | 40.0% |
| GCAAAATGACTGGTGAACTT+AGG | + | chr1_3:49640098-49640117 | None:intergenic | 40.0% | |
| GCATGCAAGTGACTTTATGT+TGG | - | chr1_3:49640350-49640369 | Msa0122800:CDS | 40.0% | |
| TCCTTGTTGGTCAAAGCAAT+TGG | - | chr1_3:49640528-49640547 | Msa0122800:CDS | 40.0% | |
| ACCAATTGCTTTGACCAACA+AGG | + | chr1_3:49640532-49640551 | None:intergenic | 40.0% | |
| ! | GCAATTGGTTTCTTTAAGGG+TGG | - | chr1_3:49640543-49640562 | Msa0122800:CDS | 40.0% |
| GGTGGGAATTTCTTAATCGT+TGG | - | chr1_3:49640561-49640580 | Msa0122800:intron | 40.0% | |
| CACACTCTGTATCTCATTTC+AGG | - | chr1_3:49640753-49640772 | Msa0122800:intron | 40.0% | |
| TCGGCCTTGCGAAAAAATAT+AGG | - | chr1_3:49640791-49640810 | Msa0122800:intron | 40.0% | |
| CGGCCTTGCGAAAAAATATA+GGG | - | chr1_3:49640792-49640811 | Msa0122800:intron | 40.0% | |
| ATAGGGATCTTCAGACTCAT+AGG | - | chr1_3:49640809-49640828 | Msa0122800:intron | 40.0% | |
| GATCACAAAACCAACCTGTA+CGG | + | chr1_3:49640841-49640860 | None:intergenic | 40.0% | |
| TGGCATAACAGCCTGTTAAA+GGG | + | chr1_3:49640977-49640996 | None:intergenic | 40.0% | |
| ATGGCATAACAGCCTGTTAA+AGG | + | chr1_3:49640978-49640997 | None:intergenic | 40.0% | |
| !! | TCACTTACCGATTCCAAGAT+GGG | + | chr1_3:49641184-49641203 | None:intergenic | 40.0% |
| !! | ATCACTTACCGATTCCAAGA+TGG | + | chr1_3:49641185-49641204 | None:intergenic | 40.0% |
| !! | GGTTTGTTACTTTCTCGGTT+AGG | - | chr1_3:49641215-49641234 | Msa0122800:intron | 40.0% |
| !!! | TTTCCTTTTTCAGTCTTCCC+TGG | - | chr1_3:49641451-49641470 | Msa0122800:intron | 40.0% |
| CGATAAAATCAGTGAGACGA+AGG | - | chr1_3:49641509-49641528 | Msa0122800:intron | 40.0% | |
| !! | GAAGGTATCAACTCCAATAG+AGG | - | chr1_3:49641527-49641546 | Msa0122800:intron | 40.0% |
| AAGTGCTAACAGTTGAATGC+AGG | + | chr1_3:49641732-49641751 | None:intergenic | 40.0% | |
| GCATTCAACTGTTAGCACTT+AGG | - | chr1_3:49641732-49641751 | Msa0122800:intron | 40.0% | |
| ! | TGTGTTTGGATGGAGTGTTT+AGG | - | chr1_3:49641756-49641775 | Msa0122800:intron | 40.0% |
| ! | TTTGGATGGAGTGTTTAGGA+GGG | - | chr1_3:49641760-49641779 | Msa0122800:intron | 40.0% |
| GCCAGAAACTTTGAATAGTG+GGG | - | chr1_3:49641912-49641931 | Msa0122800:intron | 40.0% | |
| CCAGAAACTTTGAATAGTGG+GGG | - | chr1_3:49641913-49641932 | Msa0122800:intron | 40.0% | |
| CTCAACACTTTCTGTTGTGT+TGG | + | chr1_3:49642361-49642380 | None:intergenic | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr1_3:49642645-49642664 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr1_3:49642649-49642668 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | + | chr1_3:49642655-49642674 | None:intergenic | 40.0% | |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | + | chr1_3:49642656-49642675 | None:intergenic | 40.0% |
| ! | CGAGACCTTTTTATTCGAGA+AGG | - | chr1_3:49642884-49642903 | Msa0122800:intron | 40.0% |
| ! | TTGAAGTATCCACAGAGTAG+TGG | - | chr1_3:49643032-49643051 | Msa0122800:CDS | 40.0% |
| ! | TTTTTGTTGGTCGCTTACTG+TGG | - | chr1_3:49643106-49643125 | Msa0122800:intron | 40.0% |
| TTTCAGTTGGGAGAGAGATT+CGG | - | chr1_3:49643391-49643410 | Msa0122800:intron | 40.0% | |
| GAGATTCGGGAGAAATTATC+TGG | - | chr1_3:49643405-49643424 | Msa0122800:intron | 40.0% | |
| AACGTCTTGTCAAACCAAAC+AGG | + | chr1_3:49643591-49643610 | None:intergenic | 40.0% | |
| TCATCAAAGCCAAATTCCTC+AGG | - | chr1_3:49643987-49644006 | Msa0122800:intron | 40.0% | |
| GCTTGTTTCGTATCATACAC+AGG | + | chr1_3:49644074-49644093 | None:intergenic | 40.0% | |
| ! | AAGCAACTTTTGCTCGCAAT+GGG | - | chr1_3:49644090-49644109 | Msa0122800:exon | 40.0% |
| ! | GAGATTACTTCCTGATAGTG+AGG | + | chr1_3:49644160-49644179 | None:intergenic | 40.0% |
| ATAAGGCTTCTTGAAATCCC+AGG | + | chr1_3:49644225-49644244 | None:intergenic | 40.0% | |
| TGGGATTTCAAGAAGCCTTA+TGG | - | chr1_3:49644224-49644243 | Msa0122800:five_prime_UTR | 40.0% | |
| AGGGGATCTAGAAATGATGT+CGG | + | chr1_3:49644318-49644337 | None:intergenic | 40.0% | |
| !! | ATCTTCTGAAGCAATCTGAG+GGG | + | chr1_3:49644336-49644355 | None:intergenic | 40.0% |
| !! | AACGAATGATATGGTGCTGT+AGG | - | chr1_3:49644571-49644590 | Msa0122800:five_prime_UTR | 40.0% |
| ACAAGTTTGGAGATGAACGG+AGG | + | chr1_3:49637141-49637160 | None:intergenic | 45.0% | |
| TTGGGGTGAAGGAATGTAGT+TGG | - | chr1_3:49637326-49637345 | Msa0122800:three_prime_UTR | 45.0% | |
| CTTGGAAGGAAAATTGGGAG+TGG | - | chr1_3:49637646-49637665 | Msa0122800:CDS | 45.0% | |
| TATACAAACTGGAGAGGAGG+TGG | - | chr1_3:49637805-49637824 | Msa0122800:intron | 45.0% | |
| CGCAAGCATGCTCAATTTCA+TGG | + | chr1_3:49637995-49638014 | None:intergenic | 45.0% | |
| TGACAGAACCGTGAGACAAT+TGG | + | chr1_3:49638294-49638313 | None:intergenic | 45.0% | |
| ! | ACTCCAAACCATTTGAGGTG+GGG | + | chr1_3:49638407-49638426 | None:intergenic | 45.0% |
| CAACTCCAAACCATTTGAGG+TGG | + | chr1_3:49638409-49638428 | None:intergenic | 45.0% | |
| CCTCAACTCCAAACCATTTG+AGG | + | chr1_3:49638412-49638431 | None:intergenic | 45.0% | |
| ! | CCTCAAATGGTTTGGAGTTG+AGG | - | chr1_3:49638409-49638428 | Msa0122800:intron | 45.0% |
| ! | TGAGGGAGAGTACAATGTCA+TGG | - | chr1_3:49638427-49638446 | Msa0122800:intron | 45.0% |
| AGGCCCATCAGAAAATTGTC+TGG | + | chr1_3:49638701-49638720 | None:intergenic | 45.0% | |
| !! | GACAATTTTCTGATGGGCCT+CGG | - | chr1_3:49638701-49638720 | Msa0122800:intron | 45.0% |
| !! | CTTGATTTGCTTTACGTCCG+AGG | + | chr1_3:49638721-49638740 | None:intergenic | 45.0% |
| TATATGACAGCGTTACCTCC+TGG | + | chr1_3:49638993-49639012 | None:intergenic | 45.0% | |
| GTTGAGTCCCACATTGGATA+TGG | - | chr1_3:49639144-49639163 | Msa0122800:intron | 45.0% | |
| AAACTGTGCACCTTGTGTTG+TGG | + | chr1_3:49639215-49639234 | None:intergenic | 45.0% | |
| CAACACAAGGTGCACAGTTT+CGG | - | chr1_3:49639215-49639234 | Msa0122800:intron | 45.0% | |
| CATACCAAGCGACGAAGAAA+TGG | - | chr1_3:49639252-49639271 | Msa0122800:intron | 45.0% | |
| TTCTCCATTTCTTCGTCGCT+TGG | + | chr1_3:49639259-49639278 | None:intergenic | 45.0% | |
| ! | AGAATTTTGCAGGGGATGAG+TGG | - | chr1_3:49639412-49639431 | Msa0122800:intron | 45.0% |
| GAGGAGTCTAATAGAAACCC+TGG | - | chr1_3:49639559-49639578 | Msa0122800:intron | 45.0% | |
| GCAGGGATCTATGCTATGAA+CGG | + | chr1_3:49640234-49640253 | None:intergenic | 45.0% | |
| GATCCCTGCACGACAAATTT+AGG | - | chr1_3:49640245-49640264 | Msa0122800:intron | 45.0% | |
| !! | CAGGTGTATGCCATTGACTT+CGG | - | chr1_3:49640772-49640791 | Msa0122800:intron | 45.0% |
| CGCATTTGCATCCCTTTAAC+AGG | - | chr1_3:49640963-49640982 | Msa0122800:intron | 45.0% | |
| GTCAACACCCATCTTGGAAT+CGG | - | chr1_3:49641174-49641193 | Msa0122800:intron | 45.0% | |
| ACAAAGTCGAAGGGATGATC+TGG | - | chr1_3:49641320-49641339 | Msa0122800:intron | 45.0% | |
| ! | AGGGATGATCTGGAATCTCT+TGG | - | chr1_3:49641330-49641349 | Msa0122800:intron | 45.0% |
| TTGCCAGGGAAGACTGAAAA+AGG | + | chr1_3:49641457-49641476 | None:intergenic | 45.0% | |
| !! | TTTTTCAGTCTTCCCTGGCA+AGG | - | chr1_3:49641456-49641475 | Msa0122800:intron | 45.0% |
| GTTAGCACTTAGGGTGTGTT+TGG | - | chr1_3:49641742-49641761 | Msa0122800:intron | 45.0% | |
| ! | GTTTGGATGGAGTGTTTAGG+AGG | - | chr1_3:49641759-49641778 | Msa0122800:intron | 45.0% |
| ! | TTGGATGGAGTGTTTAGGAG+GGG | - | chr1_3:49641761-49641780 | Msa0122800:intron | 45.0% |
| CCCCCACTATTCAAAGTTTC+TGG | + | chr1_3:49641916-49641935 | None:intergenic | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr1_3:49642644-49642663 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr1_3:49642646-49642665 | None:intergenic | 45.0% | |
| GAGACAGAAGGGAAATGAAG+AGG | + | chr1_3:49642700-49642719 | None:intergenic | 45.0% | |
| TGTCCTCAAACCTCAACGAA+CGG | + | chr1_3:49642832-49642851 | None:intergenic | 45.0% | |
| TGGTTGTTGTAACGACAGCA+TGG | - | chr1_3:49643126-49643145 | Msa0122800:intron | 45.0% | |
| CTGTCACAGCACATATTAGC+AGG | + | chr1_3:49643251-49643270 | None:intergenic | 45.0% | |
| TTCAGTTGGGAGAGAGATTC+GGG | - | chr1_3:49643392-49643411 | Msa0122800:intron | 45.0% | |
| ! | TTGTTGAAGCATTCACCCAG+AGG | - | chr1_3:49643433-49643452 | Msa0122800:intron | 45.0% |
| GCAAATTCTAGCCCTCATCA+CGG | - | chr1_3:49643462-49643481 | Msa0122800:intron | 45.0% | |
| AAGCAGTTCAAGAAGAGCCA+TGG | - | chr1_3:49643962-49643981 | Msa0122800:intron | 45.0% | |
| GAATGGTCACCTGAGGAATT+TGG | + | chr1_3:49643999-49644018 | None:intergenic | 45.0% | |
| AATTCCTCAGGTGACCATTC+TGG | - | chr1_3:49643999-49644018 | Msa0122800:intron | 45.0% | |
| ! | CAAGCAACTTTTGCTCGCAA+TGG | - | chr1_3:49644089-49644108 | Msa0122800:exon | 45.0% |
| TCATGCCATTGTGACCTCAA+TGG | + | chr1_3:49644291-49644310 | None:intergenic | 45.0% | |
| GGGGATCTAGAAATGATGTC+GGG | + | chr1_3:49644317-49644336 | None:intergenic | 45.0% | |
| !!! | TAAAAATGATATTTTTTTTT+TGG | + | chr1_3:49637240-49637259 | None:intergenic | 5.0% |
| TGGAGATGAACGGAGGAAGT+GGG | + | chr1_3:49637134-49637153 | None:intergenic | 50.0% | |
| TTGGAGATGAACGGAGGAAG+TGG | + | chr1_3:49637135-49637154 | None:intergenic | 50.0% | |
| TGTGGTGTGCTGGATGAAAG+AGG | + | chr1_3:49637183-49637202 | None:intergenic | 50.0% | |
| !! | AGAAGGTATCTGTGGTGTGC+TGG | + | chr1_3:49637193-49637212 | None:intergenic | 50.0% |
| TCCAGGAATCTGTGAAGACC+AGG | - | chr1_3:49638321-49638340 | Msa0122800:intron | 50.0% | |
| ATAGTGAAGCTGTGGATGCC+TGG | + | chr1_3:49638342-49638361 | None:intergenic | 50.0% | |
| ATCCCCCACCTCAAATGGTT+TGG | - | chr1_3:49638401-49638420 | Msa0122800:intron | 50.0% | |
| ! | CTCCAAACCATTTGAGGTGG+GGG | + | chr1_3:49638406-49638425 | None:intergenic | 50.0% |
| GTCATGGTCATCGACCTTCT+TGG | - | chr1_3:49638443-49638462 | Msa0122800:intron | 50.0% | |
| CAAGCAACTGCAAGCTAGTC+AGG | - | chr1_3:49639775-49639794 | Msa0122800:intron | 50.0% | |
| ! | CAACGGCGTCATTTGATTCG+TGG | - | chr1_3:49639857-49639876 | Msa0122800:intron | 50.0% |
| ! | AGAGTACTCTCACTTCGTCC+TGG | - | chr1_3:49640056-49640075 | Msa0122800:intron | 50.0% |
| TTTCGCAAGGCCGAAGTCAA+TGG | + | chr1_3:49640785-49640804 | None:intergenic | 50.0% | |
| CTCATAGGCACATACCGTAC+AGG | - | chr1_3:49640824-49640843 | Msa0122800:intron | 50.0% | |
| TAGGCACATACCGTACAGGT+TGG | - | chr1_3:49640828-49640847 | Msa0122800:intron | 50.0% | |
| GCAAGTGTCAACACCCATCT+TGG | - | chr1_3:49641168-49641187 | Msa0122800:intron | 50.0% | |
| TGGTGGCAGAACAAAGTCGA+AGG | - | chr1_3:49641310-49641329 | Msa0122800:intron | 50.0% | |
| GGTGGCAGAACAAAGTCGAA+GGG | - | chr1_3:49641311-49641330 | Msa0122800:intron | 50.0% | |
| GCACTTAGGGTGTGTTTGGA+TGG | - | chr1_3:49641746-49641765 | Msa0122800:intron | 50.0% | |
| ! | ATGGAGTGTTTAGGAGGGGA+GGG | - | chr1_3:49641765-49641784 | Msa0122800:intron | 50.0% |
| TGGATTGAGGGTTTAGGAGG+GGG | + | chr1_3:49642643-49642662 | None:intergenic | 50.0% | |
| TCCACTATTGCCGTTCGTTG+AGG | - | chr1_3:49642819-49642838 | Msa0122800:intron | 50.0% | |
| ACCTCAACGAACGGCAATAG+TGG | + | chr1_3:49642823-49642842 | None:intergenic | 50.0% | |
| TTGCCGTTCGTTGAGGTTTG+AGG | - | chr1_3:49642826-49642845 | Msa0122800:intron | 50.0% | |
| TCGGTGGTTGTGAATTGACG+TGG | - | chr1_3:49642959-49642978 | Msa0122800:intron | 50.0% | |
| CGGTGGTTGTGAATTGACGT+GGG | - | chr1_3:49642960-49642979 | Msa0122800:intron | 50.0% | |
| TTGTAACGACAGCATGGCAC+TGG | - | chr1_3:49643132-49643151 | Msa0122800:intron | 50.0% | |
| CAGCTGAAAGACAACAGACC+TGG | + | chr1_3:49643207-49643226 | None:intergenic | 50.0% | |
| AGAATTTGCGCGGTTCCTCT+GGG | + | chr1_3:49643451-49643470 | None:intergenic | 50.0% | |
| TAGAATTTGCGCGGTTCCTC+TGG | + | chr1_3:49643452-49643471 | None:intergenic | 50.0% | |
| GATGAGGGCTAGAATTTGCG+CGG | + | chr1_3:49643461-49643480 | None:intergenic | 50.0% | |
| TGGTGTGTTCACCGTGATGA+GGG | + | chr1_3:49643476-49643495 | None:intergenic | 50.0% | |
| ACGGTGAACACACCAGACAT+AGG | - | chr1_3:49643481-49643500 | Msa0122800:intron | 50.0% | |
| TGAACTCTATGTGCGCCAGA+TGG | + | chr1_3:49644050-49644069 | None:intergenic | 50.0% | |
| AGCTCCTCAGAGGATCATCA+CGG | + | chr1_3:49644130-49644149 | None:intergenic | 50.0% | |
| ! | GCTTTGAGCTCCTCACTATC+AGG | - | chr1_3:49644147-49644166 | Msa0122800:five_prime_UTR | 50.0% |
| !! | CGGAGGAAGTGGGTCTTGTT+TGG | + | chr1_3:49637124-49637143 | None:intergenic | 55.0% |
| AGAGGAGGTGGCTGTTAAGC+TGG | - | chr1_3:49637817-49637836 | Msa0122800:intron | 55.0% | |
| ! | GCCTGGTCTTCACAGATTCC+TGG | + | chr1_3:49638325-49638344 | None:intergenic | 55.0% |
| CTGGAATCCCCCACCTCAAA+TGG | - | chr1_3:49638396-49638415 | Msa0122800:intron | 55.0% | |
| CTTCCAGACTGGGTCCAAGA+AGG | + | chr1_3:49638460-49638479 | None:intergenic | 55.0% | |
| TCTTCCCTGGCAAGGACTGA+GGG | - | chr1_3:49641464-49641483 | Msa0122800:intron | 55.0% | |
| ! | GATGGAGTGTTTAGGAGGGG+AGG | - | chr1_3:49641764-49641783 | Msa0122800:intron | 55.0% |
| ! | TGGAGTGTTTAGGAGGGGAG+GGG | - | chr1_3:49641766-49641785 | Msa0122800:intron | 55.0% |
| TGTTTAGGAGGGGAGGGGAA+GGG | - | chr1_3:49641771-49641790 | Msa0122800:intron | 55.0% | |
| GGGGCACAGATAGCTTAACG+TGG | - | chr1_3:49642528-49642547 | Msa0122800:intron | 55.0% | |
| TGAGGGTTTAGGAGGGGGAA+GGG | + | chr1_3:49642638-49642657 | None:intergenic | 55.0% | |
| TTGAGGGTTTAGGAGGGGGA+AGG | + | chr1_3:49642639-49642658 | None:intergenic | 55.0% | |
| !! | GACGTGGGCATTGATCATGC+AGG | - | chr1_3:49642975-49642994 | Msa0122800:CDS | 55.0% |
| CTAGAGCTGCCACTACTCTG+TGG | + | chr1_3:49643044-49643063 | None:intergenic | 55.0% | |
| ! | CAGAGTAGTGGCAGCTCTAG+AGG | - | chr1_3:49643044-49643063 | Msa0122800:CDS | 55.0% |
| !! | GTAGTGGCAGCTCTAGAGGA+CGG | - | chr1_3:49643048-49643067 | Msa0122800:intron | 55.0% |
| !! | TAGTGGCAGCTCTAGAGGAC+GGG | - | chr1_3:49643049-49643068 | Msa0122800:intron | 55.0% |
| CTGGTGTGTTCACCGTGATG+AGG | + | chr1_3:49643477-49643496 | None:intergenic | 55.0% | |
| AGGTGACCATTCTGGCAGGA+TGG | - | chr1_3:49644007-49644026 | Msa0122800:intron | 55.0% | |
| TTGTGGCCATCCTGCCAGAA+TGG | + | chr1_3:49644016-49644035 | None:intergenic | 55.0% | |
| CTCTATGTGCGCCAGATGGA+CGG | + | chr1_3:49644046-49644065 | None:intergenic | 55.0% | |
| GCTCGCAATGGGTCTATGAG+AGG | - | chr1_3:49644101-49644120 | Msa0122800:five_prime_UTR | 55.0% | |
| TCCTCAGAGGATCATCACGG+TGG | + | chr1_3:49644127-49644146 | None:intergenic | 55.0% | |
| AGGAGCTCAAAGCTCCTCAG+AGG | + | chr1_3:49644140-49644159 | None:intergenic | 55.0% | |
| CGACCTTCTTGGACCCAGTC+TGG | - | chr1_3:49638454-49638473 | Msa0122800:intron | 60.0% | |
| CATAGCGTGCCGTGCCTGTA+AGG | + | chr1_3:49641149-49641168 | None:intergenic | 60.0% | |
| GTCTTCCCTGGCAAGGACTG+AGG | - | chr1_3:49641463-49641482 | Msa0122800:intron | 60.0% | |
| GTGTTTAGGAGGGGAGGGGA+AGG | - | chr1_3:49641770-49641789 | Msa0122800:intron | 60.0% | |
| GTTTAGGAGGGGGAAGGGAG+GGG | + | chr1_3:49642633-49642652 | None:intergenic | 60.0% | |
| GGTTTAGGAGGGGGAAGGGA+GGG | + | chr1_3:49642634-49642653 | None:intergenic | 60.0% | |
| !! | ACGACAGCATGGCACTGGCA+AGG | - | chr1_3:49643137-49643156 | Msa0122800:intron | 60.0% |
| CCTGCCAGAATGGTCACCTG+AGG | + | chr1_3:49644006-49644025 | None:intergenic | 60.0% | |
| CCTCAGGTGACCATTCTGGC+AGG | - | chr1_3:49644003-49644022 | Msa0122800:intron | 60.0% | |
| TCTGGCAGGATGGCCACAAG+TGG | - | chr1_3:49644017-49644036 | Msa0122800:intron | 60.0% | |
| CTGGCAGGATGGCCACAAGT+GGG | - | chr1_3:49644018-49644037 | Msa0122800:CDS | 60.0% | |
| TGGCAGGATGGCCACAAGTG+GGG | - | chr1_3:49644019-49644038 | Msa0122800:CDS | 60.0% | |
| GCCACCGTGATGATCCTCTG+AGG | - | chr1_3:49644123-49644142 | Msa0122800:five_prime_UTR | 60.0% | |
| CCAGCCCTCAGTCCTTGCCA+GGG | + | chr1_3:49641471-49641490 | None:intergenic | 65.0% | |
| TCCAGCCCTCAGTCCTTGCC+AGG | + | chr1_3:49641472-49641491 | None:intergenic | 65.0% | |
| TTAGGAGGGGAGGGGAAGGG+AGG | - | chr1_3:49641774-49641793 | Msa0122800:intron | 65.0% | |
| TAGGAGGGGAGGGGAAGGGA+GGG | - | chr1_3:49641775-49641794 | Msa0122800:intron | 65.0% | |
| GGGTTTAGGAGGGGGAAGGG+AGG | + | chr1_3:49642635-49642654 | None:intergenic | 65.0% | |
| GGCAGGATGGCCACAAGTGG+GGG | - | chr1_3:49644020-49644039 | Msa0122800:CDS | 65.0% | |
| AGATGGACGGCCCCCACTTG+TGG | + | chr1_3:49644033-49644052 | None:intergenic | 65.0% | |
| ACAAGTGGGGGCCGTCCATC+TGG | - | chr1_3:49644032-49644051 | Msa0122800:CDS | 65.0% | |
| CCCTGGCAAGGACTGAGGGC+TGG | - | chr1_3:49641468-49641487 | Msa0122800:intron | 70.0% | |
| AGGAGGGGAGGGGAAGGGAG+GGG | - | chr1_3:49641776-49641795 | Msa0122800:intron | 70.0% | |
| AGGAGGGGGAAGGGAGGGGA+GGG | + | chr1_3:49642629-49642648 | None:intergenic | 70.0% | |
| TAGGAGGGGGAAGGGAGGGG+AGG | + | chr1_3:49642630-49642649 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 49637036 | 49644673 | 49637036 | ID=Msa0122800;Name=Msa0122800 |
| chr1_3 | mRNA | 49637036 | 49644673 | 49637036 | ID=Msa0122800-mRNA-1;Parent=Msa0122800;Name=Msa0122800-mRNA-1;_AED=0.09;_eAED=0.09;_QI=580|1|1|1|1|1|13|498|448 |
| chr1_3 | exon | 49637036 | 49637779 | 49637036 | ID=Msa0122800-mRNA-1:exon:15088;Parent=Msa0122800-mRNA-1 |
| chr1_3 | exon | 49638191 | 49638312 | 49638191 | ID=Msa0122800-mRNA-1:exon:15087;Parent=Msa0122800-mRNA-1 |
| chr1_3 | exon | 49638502 | 49638565 | 49638502 | ID=Msa0122800-mRNA-1:exon:15086;Parent=Msa0122800-mRNA-1 |
| chr1_3 | exon | 49638639 | 49638712 | 49638639 | ID=Msa0122800-mRNA-1:exon:15085;Parent=Msa0122800-mRNA-1 |
| chr1_3 | exon | 49638804 | 49638930 | 49638804 | ID=Msa0122800-mRNA-1:exon:15084;Parent=Msa0122800-mRNA-1 |
| chr1_3 | exon | 49640161 | 49640245 | 49640161 | ID=Msa0122800-mRNA-1:exon:15083;Parent=Msa0122800-mRNA-1 |
| chr1_3 | exon | 49640327 | 49640390 | 49640327 | ID=Msa0122800-mRNA-1:exon:15082;Parent=Msa0122800-mRNA-1 |
| chr1_3 | exon | 49640514 | 49640575 | 49640514 | ID=Msa0122800-mRNA-1:exon:15081;Parent=Msa0122800-mRNA-1 |
| chr1_3 | exon | 49640864 | 49640934 | 49640864 | ID=Msa0122800-mRNA-1:exon:15080;Parent=Msa0122800-mRNA-1 |
| chr1_3 | exon | 49642970 | 49643065 | 49642970 | ID=Msa0122800-mRNA-1:exon:15079;Parent=Msa0122800-mRNA-1 |
| chr1_3 | exon | 49643165 | 49643383 | 49643165 | ID=Msa0122800-mRNA-1:exon:15078;Parent=Msa0122800-mRNA-1 |
| chr1_3 | exon | 49643871 | 49643911 | 49643871 | ID=Msa0122800-mRNA-1:exon:15077;Parent=Msa0122800-mRNA-1 |
| chr1_3 | exon | 49644018 | 49644673 | 49644018 | ID=Msa0122800-mRNA-1:exon:15076;Parent=Msa0122800-mRNA-1 |
| chr1_3 | five_prime_UTR | 49644094 | 49644673 | 49644094 | ID=Msa0122800-mRNA-1:five_prime_utr;Parent=Msa0122800-mRNA-1 |
| chr1_3 | CDS | 49644018 | 49644093 | 49644018 | ID=Msa0122800-mRNA-1:cds;Parent=Msa0122800-mRNA-1 |
| chr1_3 | CDS | 49643871 | 49643911 | 49643871 | ID=Msa0122800-mRNA-1:cds;Parent=Msa0122800-mRNA-1 |
| chr1_3 | CDS | 49643165 | 49643383 | 49643165 | ID=Msa0122800-mRNA-1:cds;Parent=Msa0122800-mRNA-1 |
| chr1_3 | CDS | 49642970 | 49643065 | 49642970 | ID=Msa0122800-mRNA-1:cds;Parent=Msa0122800-mRNA-1 |
| chr1_3 | CDS | 49640864 | 49640934 | 49640864 | ID=Msa0122800-mRNA-1:cds;Parent=Msa0122800-mRNA-1 |
| chr1_3 | CDS | 49640514 | 49640575 | 49640514 | ID=Msa0122800-mRNA-1:cds;Parent=Msa0122800-mRNA-1 |
| chr1_3 | CDS | 49640327 | 49640390 | 49640327 | ID=Msa0122800-mRNA-1:cds;Parent=Msa0122800-mRNA-1 |
| chr1_3 | CDS | 49640161 | 49640245 | 49640161 | ID=Msa0122800-mRNA-1:cds;Parent=Msa0122800-mRNA-1 |
| chr1_3 | CDS | 49638804 | 49638930 | 49638804 | ID=Msa0122800-mRNA-1:cds;Parent=Msa0122800-mRNA-1 |
| chr1_3 | CDS | 49638639 | 49638712 | 49638639 | ID=Msa0122800-mRNA-1:cds;Parent=Msa0122800-mRNA-1 |
| chr1_3 | CDS | 49638502 | 49638565 | 49638502 | ID=Msa0122800-mRNA-1:cds;Parent=Msa0122800-mRNA-1 |
| chr1_3 | CDS | 49638191 | 49638312 | 49638191 | ID=Msa0122800-mRNA-1:cds;Parent=Msa0122800-mRNA-1 |
| chr1_3 | CDS | 49637534 | 49637779 | 49637534 | ID=Msa0122800-mRNA-1:cds;Parent=Msa0122800-mRNA-1 |
| chr1_3 | three_prime_UTR | 49637036 | 49637533 | 49637036 | ID=Msa0122800-mRNA-1:three_prime_utr;Parent=Msa0122800-mRNA-1 |
| Gene Sequence |
| Protein sequence |