AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1415960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415960 MtrunA17_Chr1g0183631 97.577 454 5 1 1 448 1 454 0.0 919
Msa1415960 MtrunA17_Chr7g0261501 78.065 465 83 7 1 448 1 463 0.0 726
Msa1415960 MtrunA17_Chr1g0187571 71.304 460 115 6 1 446 2 458 0.0 641
Msa1415960 MtrunA17_Chr1g0166821 71.145 454 120 5 1 446 2 452 0.0 632
Msa1415960 MtrunA17_Chr2g0329981 65.358 433 114 8 1 425 1 405 0.0 551
Msa1415960 MtrunA17_Chr4g0071031 72.222 360 87 4 1 347 1 360 0.0 545
Msa1415960 MtrunA17_Chr8g0342821 59.958 472 154 10 1 444 1 465 0.0 540
Msa1415960 MtrunA17_Chr2g0299661 55.274 474 176 6 1 447 1 465 0.0 516
Msa1415960 MtrunA17_Chr6g0486611 76.797 306 71 0 1 306 1 306 2.51e-179 508
Msa1415960 MtrunA17_Chr1g0167261 66.935 372 90 4 1 370 2 342 6.97e-178 501
Msa1415960 MtrunA17_Chr8g0390211 77.181 298 68 0 1 298 1 298 3.13e-177 502
Msa1415960 MtrunA17_Chr3g0140071 55.582 421 171 4 1 417 1 409 3.06e-164 469
Msa1415960 MtrunA17_Chr1g0146151 70.508 295 87 0 1 295 1 295 1.34e-162 465
Msa1415960 MtrunA17_Chr7g0214531 37.716 289 161 6 5 277 31 316 9.44e-58 200
Msa1415960 MtrunA17_Chr3g0140431 37.276 279 162 6 5 273 32 307 6.90e-55 192
Msa1415960 MtrunA17_Chr1g0146301 36.918 279 163 6 5 273 118 393 3.86e-54 191
Msa1415960 MtrunA17_Chr1g0213321 36.268 284 167 6 5 277 113 393 1.13e-53 190
Msa1415960 MtrunA17_Chr7g0253211 36.525 282 163 5 9 277 324 602 6.49e-53 190
Msa1415960 MtrunA17_Chr8g0340491 36.170 282 158 7 9 273 128 404 9.78e-50 179
Msa1415960 MtrunA17_Chr5g0405421 26.818 220 144 6 8 219 98 308 3.11e-14 74.7
Msa1415960 MtrunA17_Chr7g0267751 29.167 216 131 9 9 215 135 337 9.08e-14 73.6
Msa1415960 MtrunA17_Chr4g0072831 32.680 153 71 6 7 153 8 134 2.91e-13 70.5
Msa1415960 MtrunA17_Chr3g0107051 29.817 218 133 9 5 214 17 222 8.51e-13 70.1
Msa1415960 MtrunA17_Chr7g0245031 34.375 128 70 4 109 236 252 365 1.92e-12 68.9
Msa1415960 MtrunA17_Chr8g0346071 30.415 217 126 9 7 213 15 216 1.01e-11 66.6
Msa1415960 MtrunA17_Chr7g0267771 26.522 230 142 8 9 228 88 300 1.06e-11 66.6
Msa1415960 MtrunA17_Chr5g0444171 27.488 211 137 6 9 213 92 292 2.81e-11 65.5
Msa1415960 MtrunA17_Chr8g0374701 27.948 229 139 10 6 219 122 339 3.10e-11 65.5
Msa1415960 MtrunA17_Chr1g0201571 28.302 212 127 9 9 209 126 323 3.46e-11 65.5
Msa1415960 MtrunA17_Chr1g0157131 27.652 264 158 10 4 251 69 315 5.09e-11 64.7
Msa1415960 MtrunA17_Chr4g0075541 25.887 282 179 10 11 281 89 351 5.17e-11 64.3
Msa1415960 MtrunA17_Chr8g0387671 29.437 231 134 11 9 228 66 278 6.83e-11 64.3
Msa1415960 MtrunA17_Chr3g0107011 26.070 257 137 10 3 236 8 234 8.99e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415960 AT4G28540.1 72.594 478 98 11 1 448 5 479 0.0 679
Msa1415960 AT4G14340.1 70.861 453 116 7 1 446 7 450 0.0 642
Msa1415960 AT3G23340.1 71.938 449 110 7 1 446 1 436 0.0 642
Msa1415960 AT1G03930.1 68.354 474 121 8 1 448 1 471 0.0 626
Msa1415960 AT5G43320.1 67.579 475 124 7 1 446 1 474 0.0 625
Msa1415960 AT3G23340.2 69.265 449 108 8 1 446 1 422 0.0 608
Msa1415960 AT1G04440.1 66.164 464 137 8 1 446 1 462 0.0 599
Msa1415960 AT5G44100.1 82.000 350 58 2 1 346 1 349 0.0 597
Msa1415960 AT5G44100.2 82.000 350 58 2 1 346 1 349 0.0 597
Msa1415960 AT4G14340.2 83.537 328 53 1 1 328 7 333 0.0 576
Msa1415960 AT5G43320.2 81.024 332 60 1 1 329 1 332 0.0 565
Msa1415960 AT5G43320.3 81.024 332 60 1 1 329 1 332 0.0 565
Msa1415960 AT1G72710.1 75.152 330 79 2 1 328 1 329 0.0 536
Msa1415960 AT4G26100.1 80.872 298 57 0 1 298 1 298 0.0 535
Msa1415960 AT5G57015.1 80.537 298 58 0 1 298 1 298 0.0 529
Msa1415960 AT2G19470.1 73.556 329 84 3 1 326 1 329 0.0 524
Msa1415960 AT4G28880.3 71.160 319 92 0 1 319 1 319 7.65e-176 499
Msa1415960 AT4G28880.2 71.160 319 92 0 1 319 1 319 7.65e-176 499
Msa1415960 AT4G28880.1 71.160 319 92 0 1 319 1 319 7.65e-176 499
Msa1415960 AT4G28880.4 71.160 319 92 0 1 319 1 319 7.65e-176 499
Msa1415960 AT4G28860.2 70.533 319 94 0 1 319 1 319 1.08e-174 494
Msa1415960 AT4G28860.1 74.832 298 75 0 1 298 1 298 2.02e-174 495
Msa1415960 AT4G08800.1 66.216 296 68 2 1 296 1 264 3.73e-145 416
Msa1415960 AT2G25760.2 39.286 280 155 4 9 273 107 386 7.33e-59 204
Msa1415960 AT2G25760.1 38.929 280 153 5 9 273 107 383 3.87e-56 197
Msa1415960 AT3G13670.1 35.986 289 166 6 5 277 131 416 3.68e-53 189
Msa1415960 AT5G18190.2 35.461 282 166 5 9 277 130 408 1.84e-52 187
Msa1415960 AT5G18190.1 35.461 282 166 5 9 277 130 408 1.84e-52 187
Msa1415960 AT3G03940.1 35.461 282 166 5 9 277 140 418 4.67e-52 186
Msa1415960 AT3G50530.1 28.319 226 141 7 5 219 144 359 1.10e-13 73.6
Msa1415960 AT5G21326.1 29.870 231 113 10 7 214 11 215 3.38e-13 71.6
Msa1415960 AT3G20410.2 28.384 229 143 8 9 230 91 305 5.47e-12 68.2
Msa1415960 AT3G20410.1 28.384 229 143 8 9 230 91 305 5.47e-12 68.2
Msa1415960 AT2G17890.1 25.909 220 146 7 8 219 107 317 5.77e-12 68.2
Msa1415960 AT1G30270.1 27.386 241 147 10 7 236 29 252 6.34e-12 67.8
Msa1415960 AT1G30270.2 27.386 241 147 10 7 236 29 252 6.50e-12 67.8
Msa1415960 AT2G38910.1 28.063 253 144 10 1 230 119 356 1.07e-11 67.4
Msa1415960 AT3G50530.2 26.104 249 148 9 5 219 144 390 1.42e-11 67.0
Msa1415960 AT4G36070.2 25.000 220 148 6 8 219 70 280 1.47e-11 67.0
Msa1415960 AT4G36070.1 25.000 220 148 6 8 219 70 280 1.80e-11 66.6
Msa1415960 AT3G61960.2 24.843 318 204 10 7 318 8 296 1.89e-11 66.6
Msa1415960 AT3G61960.1 24.843 318 204 10 7 318 8 296 2.02e-11 66.6
Msa1415960 AT4G31170.7 28.319 226 128 8 8 218 130 336 2.86e-11 65.5
Msa1415960 AT4G31170.6 28.319 226 128 8 8 218 130 336 2.86e-11 65.5
Msa1415960 AT4G31170.5 28.319 226 128 8 8 218 130 336 2.86e-11 65.5
Msa1415960 AT4G31170.1 28.319 226 128 8 8 218 130 336 2.86e-11 65.5
Msa1415960 AT4G31170.2 28.319 226 128 8 8 218 130 336 2.86e-11 65.5
Msa1415960 AT4G31170.3 28.319 226 128 8 8 218 130 336 2.86e-11 65.5
Msa1415960 AT4G31170.8 28.319 226 128 8 8 218 130 336 2.86e-11 65.5
Msa1415960 AT1G29230.1 27.397 219 141 9 2 213 67 274 2.91e-11 65.9
Msa1415960 AT1G01140.1 28.689 244 140 13 7 236 17 240 3.12e-11 65.5
Msa1415960 AT1G01140.3 28.689 244 140 13 7 236 17 240 3.32e-11 65.5
Msa1415960 AT1G50700.3 25.597 293 192 10 9 293 73 347 4.36e-11 65.1
Msa1415960 AT1G76040.3 27.586 232 147 8 9 233 112 329 4.65e-11 65.1
Msa1415960 AT1G76040.2 28.037 214 136 7 9 215 112 314 4.68e-11 65.5
Msa1415960 AT4G23650.1 29.167 216 131 7 9 215 78 280 6.36e-11 64.7
Msa1415960 AT1G50700.1 25.597 293 192 10 9 293 73 347 6.56e-11 64.7
Msa1415960 AT4G04720.2 23.052 308 201 9 2 293 66 353 8.09e-11 64.3
Msa1415960 AT4G04720.1 23.052 308 201 9 2 293 66 353 8.09e-11 64.3
Msa1415960 AT1G50700.2 25.357 280 184 9 9 281 73 334 8.96e-11 64.3

Find 171 sgRNAs with CRISPR-Local

Find 488 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTTCATTTCTAAATTT+TGG 0.111875 tig0024289:+68208 Msa1415960:three_prime_UTR
TTTAAACTTGGAAGGAAAAT+TGG 0.141980 tig0024289:+61653 Msa1415960:CDS
GTTCTTGATATTGATTATTC+TGG 0.171244 tig0024289:+61296 Msa1415960:five_prime_UTR
AATCAAGATTAAATGCAAAT+TGG 0.204360 tig0024289:-61434 None:intergenic
TAGAATTTGCGCGGTTCCTC+TGG 0.208716 tig0024289:-67462 None:intergenic
CAAAAGTAGTTTCACAAGTT+TGG 0.231854 tig0024289:-61164 None:intergenic
GAATGGTCACCTGAGGAATT+TGG 0.252408 tig0024289:-68009 None:intergenic
TTGTTGGGTTTGGTGAATTT+TGG 0.279061 tig0024289:+61473 Msa1415960:five_prime_UTR
CCGACTTCAAAGTGAATTTC+CGG 0.284081 tig0024289:-62512 None:intergenic
TGGGATTTCAAGAAGCCTTA+TGG 0.303360 tig0024289:+68237 Msa1415960:three_prime_UTR
ATCAAGATTAAATGCAAATT+GGG 0.306208 tig0024289:-61433 None:intergenic
ACATACCTTCTCGAATAAAA+AGG 0.309439 tig0024289:-66902 None:intergenic
CTCTTTAAATATGAATAATC+TGG 0.309704 tig0024289:-66867 None:intergenic
CAAGTCATAATTACCTCTAT+TGG 0.319914 tig0024289:-65553 None:intergenic
AAAATTGGGAGTGGTTCTTT+TGG 0.322856 tig0024289:+61668 Msa1415960:CDS
ATTTAAAGCAACGAATGATA+TGG 0.325797 tig0024289:+68575 Msa1415960:three_prime_UTR
TTCAGTTGGGAGAGAGATTC+GGG 0.329420 tig0024289:+67405 Msa1415960:intron
TATTCTGGGATGATTGGTTT+TGG 0.336900 tig0024289:+61311 Msa1415960:five_prime_UTR
CTGTTGAAAATCAATCAATT+TGG 0.339043 tig0024289:+61534 Msa1415960:five_prime_UTR
AAACAAAAGATTCAAGTTCA+TGG 0.356941 tig0024289:+68264 Msa1415960:three_prime_UTR
CAACACAATTCAACTCGATA+TGG 0.357353 tig0024289:+67952 Msa1415960:CDS
CATAGCGTGCCGTGCCTGTA+AGG 0.359631 tig0024289:-65159 None:intergenic
AATTCCTCAGGTGACCATTC+TGG 0.359748 tig0024289:+68012 Msa1415960:CDS
ATTTATTCAATTATTGTAAC+CGG 0.360177 tig0024289:+62493 Msa1415960:CDS
GTGCTAATGTATTTCTTAAG+AGG 0.362458 tig0024289:+65370 Msa1415960:CDS
TTAAACTTGGAAGGAAAATT+GGG 0.363410 tig0024289:+61654 Msa1415960:CDS
TCCAGCCCTCAGTCCTTGCC+AGG 0.368539 tig0024289:-65482 None:intergenic
TTCTTGATATTGATTATTCT+GGG 0.370586 tig0024289:+61297 Msa1415960:five_prime_UTR
AGGGAAAATAAGAACCTTAC+AGG 0.372840 tig0024289:+65145 Msa1415960:intron
TTTCAGTTGGGAGAGAGATT+CGG 0.379707 tig0024289:+67404 Msa1415960:intron
ATTGATTATTCTGGGATGAT+TGG 0.385224 tig0024289:+61305 Msa1415960:five_prime_UTR
GTCATGGTCATCGACCTTCT+TGG 0.387600 tig0024289:+62456 Msa1415960:CDS
CGACCTTCTTGGACCCAGTC+TGG 0.390528 tig0024289:+62467 Msa1415960:CDS
TTTGAATTTGTCCACAATCA+AGG 0.390569 tig0024289:+61575 Msa1415960:five_prime_UTR
TTGGGGTGAAGGAATGTAGT+TGG 0.395154 tig0024289:+61339 Msa1415960:five_prime_UTR
ATGATTCTTCAAGGAGGAAC+TGG 0.404829 tig0024289:+62390 Msa1415960:CDS
ACCTCAACGAACGGCAATAG+TGG 0.405356 tig0024289:-66833 None:intergenic
CCTCAACTCCAAACCATTTG+AGG 0.409202 tig0024289:-62422 None:intergenic
CGGAGGAAGTGGGTCTTGTT+TGG 0.413082 tig0024289:-61134 None:intergenic
GCTTTGAGCTCCTCACTATC+AGG 0.414666 tig0024289:+68160 Msa1415960:CDS
GAGATTCGGGAGAAATTATC+TGG 0.415618 tig0024289:+67418 Msa1415960:CDS
CTCAAATGGTTTGGAGTTGA+GGG 0.423483 tig0024289:+62423 Msa1415960:CDS
TCAGCTGTTAATATACAAAC+TGG 0.426788 tig0024289:+61807 Msa1415960:intron
GCAAGTGTCAACACCCATCT+TGG 0.433561 tig0024289:+65181 Msa1415960:CDS
ATAGGGATCTTCAGACTCAT+AGG 0.434481 tig0024289:+64822 Msa1415960:CDS
TTTATCATGGATCATGTGAT+TGG 0.443086 tig0024289:+61623 Msa1415960:exon
CCTCAAATGGTTTGGAGTTG+AGG 0.448526 tig0024289:+62422 Msa1415960:CDS
TTGCCGTTCGTTGAGGTTTG+AGG 0.451388 tig0024289:+66839 Msa1415960:CDS
TGGATATGCAATGTTATTTG+TGG 0.454735 tig0024289:+68482 Msa1415960:three_prime_UTR
ATATCGAGTTGAATTGTGTT+GGG 0.458129 tig0024289:-67950 None:intergenic
ACAAAGTCGAAGGGATGATC+TGG 0.458546 tig0024289:+65333 Msa1415960:CDS
TTTCGCAAGGCCGAAGTCAA+TGG 0.458863 tig0024289:-64795 None:intergenic
ATTGAATAAATCTTCCAGAC+TGG 0.465309 tig0024289:-62481 None:intergenic
CATAAAGCACAAAAGATTCC+AGG 0.469567 tig0024289:+67199 Msa1415960:CDS
AAACTGTATATGATTCTTCA+AGG 0.471640 tig0024289:+62381 Msa1415960:CDS
GTGGAAAGTTTAAACTTGGA+AGG 0.472881 tig0024289:+61645 Msa1415960:CDS
CTCCAAACCATTTGAGGTGG+GGG 0.473526 tig0024289:-62416 None:intergenic
TTGGAGATGAACGGAGGAAG+TGG 0.485546 tig0024289:-61145 None:intergenic
GGCAGGATGGCCACAAGTGG+GGG 0.486821 tig0024289:+68033 Msa1415960:CDS
ATAGTGAAGCTGTGGATGCC+TGG 0.493685 tig0024289:-62352 None:intergenic
TTGAATTTGTCCACAATCAA+GGG 0.497388 tig0024289:+61576 Msa1415960:five_prime_UTR
TCTTCCCTGGCAAGGACTGA+GGG 0.499281 tig0024289:+65477 Msa1415960:CDS
AGAAGGTATCTGTGGTGTGC+TGG 0.499832 tig0024289:-61203 None:intergenic
TTGTGGCCATCCTGCCAGAA+TGG 0.501550 tig0024289:-68026 None:intergenic
CCCTGGCAAGGACTGAGGGC+TGG 0.502421 tig0024289:+65481 Msa1415960:CDS
GTCAACACCCATCTTGGAAT+CGG 0.505171 tig0024289:+65187 Msa1415960:CDS
ATCATCATAAGTCCTATGTC+TGG 0.505727 tig0024289:-67506 None:intergenic
CATATCGAGTTGAATTGTGT+TGG 0.505789 tig0024289:-67951 None:intergenic
ATTGGTGGAAAGTTTAAACT+TGG 0.508093 tig0024289:+61641 Msa1415960:CDS
TTGAATTCAGCCCTTGATTG+TGG 0.510798 tig0024289:-61586 None:intergenic
AGAGGAGGTGGCTGTTAAGC+TGG 0.511655 tig0024289:+61830 Msa1415960:CDS
CAGGTGTATGCCATTGACTT+CGG 0.512497 tig0024289:+64785 Msa1415960:intron
AGAATTTGCGCGGTTCCTCT+GGG 0.513807 tig0024289:-67461 None:intergenic
CTGGCAGGATGGCCACAAGT+GGG 0.513957 tig0024289:+68031 Msa1415960:CDS
AGGGATGATCTGGAATCTCT+TGG 0.515030 tig0024289:+65343 Msa1415960:CDS
GAAGGTATCAACTCCAATAG+AGG 0.515426 tig0024289:+65540 Msa1415960:CDS
GTCTTCCCTGGCAAGGACTG+AGG 0.516641 tig0024289:+65476 Msa1415960:intron
TCAATATCAAGAACAACAAA+GGG 0.519549 tig0024289:-61287 None:intergenic
ATCAATATCAAGAACAACAA+AGG 0.520586 tig0024289:-61288 None:intergenic
AATTGTCTGGCTTTATGTCT+CGG 0.521040 tig0024289:-62698 None:intergenic
ATCACTTACCGATTCCAAGA+TGG 0.522339 tig0024289:-65195 None:intergenic
TCCACTATTGCCGTTCGTTG+AGG 0.522705 tig0024289:+66832 Msa1415960:CDS
CAGAGTAGTGGCAGCTCTAG+AGG 0.523385 tig0024289:+67057 Msa1415960:CDS
TCACTTACCGATTCCAAGAT+GGG 0.528445 tig0024289:-65194 None:intergenic
GGGCTGAATTCAATATTTGA+AGG 0.528537 tig0024289:+61596 Msa1415960:five_prime_UTR
AGGCCCATCAGAAAATTGTC+TGG 0.529417 tig0024289:-62711 None:intergenic
AACTCCAAACCATTTGAGGT+GGG 0.533255 tig0024289:-62418 None:intergenic
TGGCAGGATGGCCACAAGTG+GGG 0.534769 tig0024289:+68032 Msa1415960:CDS
CTCTATGTGCGCCAGATGGA+CGG 0.535759 tig0024289:-68056 None:intergenic
CTTGATTTGCTTTACGTCCG+AGG 0.536022 tig0024289:-62731 None:intergenic
TTGTAACGACAGCATGGCAC+TGG 0.538838 tig0024289:+67145 Msa1415960:intron
TCAAGATTAAATGCAAATTG+GGG 0.540099 tig0024289:-61432 None:intergenic
ATCATGGATCATGTGATTGG+TGG 0.540398 tig0024289:+61626 Msa1415960:exon
TTGAAACATCCTCATGAATG+AGG 0.540842 tig0024289:-61386 None:intergenic
TATACAAACTGGAGAGGAGG+TGG 0.543406 tig0024289:+61818 Msa1415960:CDS
AATCTTCTGAAGCAATCTGA+GGG 0.543803 tig0024289:-68347 None:intergenic
TTGAATAAATCTTCCAGACT+GGG 0.547330 tig0024289:-62480 None:intergenic
TGAATAATTCCTCATTCATG+AGG 0.551215 tig0024289:+61377 Msa1415960:five_prime_UTR
TAATGTATTTCTTAAGAGGA+AGG 0.552033 tig0024289:+65374 Msa1415960:CDS
TAGTGGCAGCTCTAGAGGAC+GGG 0.553447 tig0024289:+67062 Msa1415960:CDS
TCTGGCAGGATGGCCACAAG+TGG 0.554722 tig0024289:+68030 Msa1415960:CDS
GTAGTGGCAGCTCTAGAGGA+CGG 0.557752 tig0024289:+67061 Msa1415960:CDS
GTTGAATACATGCATTCAAG+AGG 0.558652 tig0024289:+62666 Msa1415960:CDS
TCATCAAAGCCAAATTCCTC+AGG 0.559975 tig0024289:+68000 Msa1415960:CDS
GAATAAGGTAGGAAAAGAGA+AGG 0.561006 tig0024289:-61220 None:intergenic
ATAAGGCTTCTTGAAATCCC+AGG 0.563366 tig0024289:-68235 None:intergenic
CAACTCCAAACCATTTGAGG+TGG 0.572196 tig0024289:-62419 None:intergenic
TCCAGGAATCTGTGAAGACC+AGG 0.574379 tig0024289:+62334 Msa1415960:intron
CCTCAGGTGACCATTCTGGC+AGG 0.574601 tig0024289:+68016 Msa1415960:CDS
TTCACAAGTTTGGAGATGAA+CGG 0.574856 tig0024289:-61154 None:intergenic
AAATCTTCTGAAGCAATCTG+AGG 0.574956 tig0024289:-68348 None:intergenic
AGGTGACCATTCTGGCAGGA+TGG 0.577708 tig0024289:+68020 Msa1415960:CDS
ACTATCAGGAAGTAATCTCA+AGG 0.579172 tig0024289:+68174 Msa1415960:exon
TGGTGTGTTCACCGTGATGA+GGG 0.579905 tig0024289:-67486 None:intergenic
CTCATAGGCACATACCGTAC+AGG 0.580718 tig0024289:+64837 Msa1415960:CDS
AGACAGACTTACTAATTGAT+CGG 0.581760 tig0024289:-62547 None:intergenic
CTTGGAAGGAAAATTGGGAG+TGG 0.582542 tig0024289:+61659 Msa1415960:CDS
GGGGATCTAGAAATGATGTC+GGG 0.584750 tig0024289:-68327 None:intergenic
CTTCCAGACTGGGTCCAAGA+AGG 0.585280 tig0024289:-62470 None:intergenic
GATCACAAAACCAACCTGTA+CGG 0.586380 tig0024289:-64851 None:intergenic
GGACAAATTCAAACAGAGGA+AGG 0.587793 tig0024289:-61565 None:intergenic
GAGATTACTTCCTGATAGTG+AGG 0.590566 tig0024289:-68170 None:intergenic
CCAGCCCTCAGTCCTTGCCA+GGG 0.593406 tig0024289:-65481 None:intergenic
ACTCCAAACCATTTGAGGTG+GGG 0.595250 tig0024289:-62417 None:intergenic
TGAACTCTATGTGCGCCAGA+TGG 0.596034 tig0024289:-68060 None:intergenic
ATTTGGCTTTGATGATACCA+TGG 0.597247 tig0024289:-67992 None:intergenic
TGGTGGCAGAACAAAGTCGA+AGG 0.597531 tig0024289:+65323 Msa1415960:intron
GCTTGTTTCGTATCATACAC+AGG 0.597643 tig0024289:-68084 None:intergenic
ACGGTGAACACACCAGACAT+AGG 0.599179 tig0024289:+67494 Msa1415960:CDS
GCTCGCAATGGGTCTATGAG+AGG 0.601655 tig0024289:+68114 Msa1415960:CDS
AGGGGATCTAGAAATGATGT+CGG 0.602938 tig0024289:-68328 None:intergenic
CCGGAAATTCACTTTGAAGT+CGG 0.603149 tig0024289:+62512 Msa1415960:CDS
CTGGTGTGTTCACCGTGATG+AGG 0.605762 tig0024289:-67487 None:intergenic
AAATAATAATAATTCAGCAA+TGG 0.606102 tig0024289:-68662 None:intergenic
AACGAATGATATGGTGCTGT+AGG 0.611429 tig0024289:+68584 Msa1415960:three_prime_UTR
AGGAGCTCAAAGCTCCTCAG+AGG 0.611695 tig0024289:-68150 None:intergenic
AGGAAAAGAGAAGGTATCTG+TGG 0.614878 tig0024289:-61211 None:intergenic
ACATAGGACTTATGATGATG+TGG 0.615199 tig0024289:+67510 Msa1415960:CDS
ACGACAGCATGGCACTGGCA+AGG 0.615258 tig0024289:+67150 Msa1415960:intron
ATATTAATGAATTACCATTG+AGG 0.618281 tig0024289:+68287 Msa1415960:three_prime_UTR
TTGAAGTATCCACAGAGTAG+TGG 0.619683 tig0024289:+67045 Msa1415960:CDS
TTTGACTCATAGTGAAGCTG+TGG 0.620621 tig0024289:-62360 None:intergenic
CGATAAAATCAGTGAGACGA+AGG 0.621170 tig0024289:+65522 Msa1415960:CDS
TGTCCTCAAACCTCAACGAA+CGG 0.628598 tig0024289:-66842 None:intergenic
CTATCAGGAAGTAATCTCAA+GGG 0.630386 tig0024289:+68175 Msa1415960:exon
TGGAGATGAACGGAGGAAGT+GGG 0.631012 tig0024289:-61144 None:intergenic
TCATGCCATTGTGACCTCAA+TGG 0.631482 tig0024289:-68301 None:intergenic
TGAGGGAGAGTACAATGTCA+TGG 0.631924 tig0024289:+62440 Msa1415960:CDS
AAATAAGAACCTTACAGGCA+CGG 0.632067 tig0024289:+65150 Msa1415960:CDS
GATGAGGGCTAGAATTTGCG+CGG 0.634849 tig0024289:-67471 None:intergenic
TAATATACAAACTGGAGAGG+AGG 0.635465 tig0024289:+61815 Msa1415960:CDS
TGTGGTGTGCTGGATGAAAG+AGG 0.645151 tig0024289:-61193 None:intergenic
AAGCAGTTCAAGAAGAGCCA+TGG 0.646616 tig0024289:+67975 Msa1415960:CDS
ACAGTGAATGTAGTTTAACA+AGG 0.650280 tig0024289:+68525 Msa1415960:three_prime_UTR
CTAGAGCTGCCACTACTCTG+TGG 0.650464 tig0024289:-67054 None:intergenic
TTGTGGACAAATTCAAACAG+AGG 0.650537 tig0024289:-61569 None:intergenic
AAGTATGATACAAACTCAGA+GGG 0.655305 tig0024289:-66810 None:intergenic
TGTTAATATACAAACTGGAG+AGG 0.660638 tig0024289:+61812 Msa1415960:CDS
GAAGTATGATACAAACTCAG+AGG 0.660966 tig0024289:-66811 None:intergenic
GGTGGCAGAACAAAGTCGAA+GGG 0.669079 tig0024289:+65324 Msa1415960:intron
TTGTTGAAGCATTCACCCAG+AGG 0.669158 tig0024289:+67446 Msa1415960:CDS
CAAGATTAAATGCAAATTGG+GGG 0.673478 tig0024289:-61431 None:intergenic
AATTACCATTGAGGTCACAA+TGG 0.674062 tig0024289:+68296 Msa1415960:three_prime_UTR
CCTGCCAGAATGGTCACCTG+AGG 0.679602 tig0024289:-68016 None:intergenic
GCAAATTCTAGCCCTCATCA+CGG 0.684087 tig0024289:+67475 Msa1415960:CDS
ACAAGTTTGGAGATGAACGG+AGG 0.694451 tig0024289:-61151 None:intergenic
AGCTCCTCAGAGGATCATCA+CGG 0.696325 tig0024289:-68140 None:intergenic
ATCTTCTGAAGCAATCTGAG+GGG 0.701243 tig0024289:-68346 None:intergenic
GCCACCGTGATGATCCTCTG+AGG 0.725239 tig0024289:+68136 Msa1415960:CDS
CTGTATATGATTCTTCAAGG+AGG 0.728537 tig0024289:+62384 Msa1415960:CDS
TCCTCAGAGGATCATCACGG+TGG 0.751052 tig0024289:-68137 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATTAAAAACAAAAAAAA+GGG - tig0024289:61725-61744 None:intergenic 10.0%
!! ATGAATTAAAAACAAAAAAA+AGG - tig0024289:61726-61745 None:intergenic 10.0%
!!! TTGTTTTTAATTCATTTATT+TGG + tig0024289:61731-61750 Msa1415960:intron 10.0%
!!! TGTTTTTAATTCATTTATTT+GGG + tig0024289:61732-61751 Msa1415960:intron 10.0%
!! TAATCATATATAGATAATTT+AGG - tig0024289:62867-62886 None:intergenic 10.0%
!! ATTAAATATAAGAAAATCTT+GGG + tig0024289:63125-63144 Msa1415960:intron 10.0%
!! CCATAAAATAAAATAAAAAA+TGG - tig0024289:64640-64659 None:intergenic 10.0%
!!! CCATTTTTTATTTTATTTTA+TGG + tig0024289:64637-64656 Msa1415960:intron 10.0%
!! AAATGAATTATTACATTATT+AGG + tig0024289:65264-65283 Msa1415960:intron 10.0%
!!! TACTTTTCATTTTTAAATTA+CGG + tig0024289:65818-65837 Msa1415960:intron 10.0%
!!! TTTATGAAAATAACATTTTA+GGG - tig0024289:66685-66704 None:intergenic 10.0%
!!! TTTTATGAAAATAACATTTT+AGG - tig0024289:66686-66705 None:intergenic 10.0%
!!! TTTTAGATTTGTAAATAAAA+CGG - tig0024289:67745-67764 None:intergenic 10.0%
!!! TTTTATGAATTTCTAGAATT+TGG + tig0024289:61908-61927 Msa1415960:intron 15.0%
!!! ATGTTTTAAATGTTAACTTT+TGG + tig0024289:62059-62078 Msa1415960:intron 15.0%
!! ATTTATTCAATTATTGTAAC+CGG + tig0024289:62493-62512 Msa1415960:CDS 15.0%
!! TAATATGGTTCTTTATATAA+TGG + tig0024289:62591-62610 Msa1415960:intron 15.0%
!! AAAACATAATAGCTTAAAAT+GGG - tig0024289:62951-62970 None:intergenic 15.0%
!! AAAAACATAATAGCTTAAAA+TGG - tig0024289:62952-62971 None:intergenic 15.0%
!! GATTAAATATAAGAAAATCT+TGG + tig0024289:63124-63143 Msa1415960:intron 15.0%
!! TATTATATTGATATTGATAG+CGG + tig0024289:63714-63733 Msa1415960:intron 15.0%
!!! TCATAGTAATATTTACTTTT+TGG + tig0024289:64171-64190 Msa1415960:intron 15.0%
!!! CATAGTAATATTTACTTTTT+GGG + tig0024289:64172-64191 Msa1415960:intron 15.0%
!!! TTTTATTTTATGGATGTTAT+AGG + tig0024289:64647-64666 Msa1415960:intron 15.0%
!! CTAAAATATTATCTACATTT+AGG - tig0024289:65035-65054 None:intergenic 15.0%
!!! ATATTTTTCACTAATCAATT+TGG - tig0024289:66167-66186 None:intergenic 15.0%
!! AAAATGACTAATAAAAACTA+AGG + tig0024289:66230-66249 Msa1415960:intron 15.0%
!! GATTATGTAATGTTATATTA+TGG - tig0024289:66322-66341 None:intergenic 15.0%
!! ATCATCATACATTAATTATT+AGG + tig0024289:66339-66358 Msa1415960:intron 15.0%
!!! TACTTTTCTTTTTCAAATTA+CGG - tig0024289:66617-66636 None:intergenic 15.0%
!!! ATTTTTAATTGCTATGAATA+TGG - tig0024289:68627-68646 None:intergenic 15.0%
!! AAATAATAATAATTCAGCAA+TGG - tig0024289:68665-68684 None:intergenic 15.0%
!!! TTTTTTGGAAAAACAGAATA+AGG - tig0024289:61238-61257 None:intergenic 20.0%
!!! TTCTTGATATTGATTATTCT+GGG + tig0024289:61297-61316 Msa1415960:five_prime_UTR 20.0%
!! ATCAAGATTAAATGCAAATT+GGG - tig0024289:61436-61455 None:intergenic 20.0%
!! AATCAAGATTAAATGCAAAT+TGG - tig0024289:61437-61456 None:intergenic 20.0%
!!! TTAGATTGTGAATTTTTGTT+GGG + tig0024289:61458-61477 Msa1415960:five_prime_UTR 20.0%
!!! GTTGATTTTTTTTTTCATGT+TGG + tig0024289:61930-61949 Msa1415960:intron 20.0%
!! GATATTATCTGAACTATTTA+GGG + tig0024289:61971-61990 Msa1415960:intron 20.0%
!!! TTTTTTTTGTTATCAGTTAG+TGG + tig0024289:62245-62264 Msa1415960:intron 20.0%
!!! AAGCTATTATGTTTTTTCTT+TGG + tig0024289:62956-62975 Msa1415960:intron 20.0%
!!! ACAAGATTCTATCATTTTTT+CGG - tig0024289:63543-63562 None:intergenic 20.0%
!!! TCTTTATTTATATCAAAGAC+AGG - tig0024289:63938-63957 None:intergenic 20.0%
!!! TACAAAATGAAGTCTTTTAA+AGG - tig0024289:64518-64537 None:intergenic 20.0%
!! AGCAATTATTAAGCAATATA+AGG - tig0024289:64931-64950 None:intergenic 20.0%
!! AACTAAAACAATATCAAACT+TGG + tig0024289:65063-65082 Msa1415960:intron 20.0%
!! CAAAATATATTGAGATCAAT+GGG - tig0024289:65100-65119 None:intergenic 20.0%
!! ACAAAATATATTGAGATCAA+TGG - tig0024289:65101-65120 None:intergenic 20.0%
!!! ATATTTTTCTTCTTTGCTTA+GGG + tig0024289:65126-65145 Msa1415960:intron 20.0%
!!! GTTTCTTGTTTATTAGAAAT+TGG + tig0024289:65663-65682 Msa1415960:intron 20.0%
!!! ATCCAAATTATTTAAGATGA+TGG - tig0024289:65977-65996 None:intergenic 20.0%
!!! TAAAAACTAAGGTTTGTTTT+TGG + tig0024289:66241-66260 Msa1415960:intron 20.0%
!!! TGAAGGTTTTGAATTAAAAT+GGG - tig0024289:66292-66311 None:intergenic 20.0%
!!! TTGAAGGTTTTGAATTAAAA+TGG - tig0024289:66293-66312 None:intergenic 20.0%
!! TATATTATGGAAAAACTTGA+AGG - tig0024289:66309-66328 None:intergenic 20.0%
!!! TTACGTGCTTTTATAAAAAT+AGG + tig0024289:66770-66789 Msa1415960:intron 20.0%
!! CTCTTTAAATATGAATAATC+TGG - tig0024289:66870-66889 None:intergenic 20.0%
!!! TTGTTGTTTTACATTTTTGT+TGG + tig0024289:67106-67125 Msa1415960:intron 20.0%
!! TTATGTGAAAAAACATGAAA+TGG - tig0024289:67635-67654 None:intergenic 20.0%
!! ATATTTACAAATGGTAAACA+AGG - tig0024289:67682-67701 None:intergenic 20.0%
!! CTAGTACAAATATTTACAAA+TGG - tig0024289:67691-67710 None:intergenic 20.0%
!!! TGTTCTTCATTTCTAAATTT+TGG + tig0024289:68208-68227 Msa1415960:three_prime_UTR 20.0%
!! ATATTAATGAATTACCATTG+AGG + tig0024289:68287-68306 Msa1415960:three_prime_UTR 20.0%
! TCAATATCAAGAACAACAAA+GGG - tig0024289:61290-61309 None:intergenic 25.0%
! ATCAATATCAAGAACAACAA+AGG - tig0024289:61291-61310 None:intergenic 25.0%
!! GTTCTTGATATTGATTATTC+TGG + tig0024289:61296-61315 Msa1415960:five_prime_UTR 25.0%
! TCAAGATTAAATGCAAATTG+GGG - tig0024289:61435-61454 None:intergenic 25.0%
!! GTTAGATTGTGAATTTTTGT+TGG + tig0024289:61457-61476 Msa1415960:five_prime_UTR 25.0%
!!! GTTAGGATTTTTATTGATTC+AGG + tig0024289:61502-61521 Msa1415960:five_prime_UTR 25.0%
! CTGTTGAAAATCAATCAATT+TGG + tig0024289:61534-61553 Msa1415960:five_prime_UTR 25.0%
!! ATTTGAAGGTGATTTTATCA+TGG + tig0024289:61610-61629 Msa1415960:exon 25.0%
! TTTAAACTTGGAAGGAAAAT+TGG + tig0024289:61653-61672 Msa1415960:CDS 25.0%
! TTAAACTTGGAAGGAAAATT+GGG + tig0024289:61654-61673 Msa1415960:CDS 25.0%
!!! TTGGTTCTAGATGTATTATT+AGG + tig0024289:61949-61968 Msa1415960:intron 25.0%
! GGATATTATCTGAACTATTT+AGG + tig0024289:61970-61989 Msa1415960:intron 25.0%
! ATATCATTTATCGAAGGAAA+TGG + tig0024289:62028-62047 Msa1415960:intron 25.0%
!! AATGTTAACTTTTGGTCAAT+AGG + tig0024289:62067-62086 Msa1415960:intron 25.0%
! AAACTGTATATGATTCTTCA+AGG + tig0024289:62381-62400 Msa1415960:CDS 25.0%
! TTGGCGAAAGTTATTTAATA+TGG + tig0024289:62576-62595 Msa1415960:intron 25.0%
!! AAAAAACAAACAAAAGTGTG+AGG - tig0024289:62634-62653 None:intergenic 25.0%
! TTTAATTCCTTTGTCTATTG+TGG + tig0024289:62795-62814 Msa1415960:intron 25.0%
! TTAATTCCTTTGTCTATTGT+GGG + tig0024289:62796-62815 Msa1415960:intron 25.0%
! ACCTAGAAAAGAATTATGAT+AGG + tig0024289:62893-62912 Msa1415960:intron 25.0%
! CCTAGAAAAGAATTATGATA+GGG + tig0024289:62894-62913 Msa1415960:intron 25.0%
!! TGTCATATATTTTCTTGTGT+GGG + tig0024289:63017-63036 Msa1415960:intron 25.0%
! AGAGTCTAAATAGGAATAAA+TGG + tig0024289:63058-63077 Msa1415960:intron 25.0%
! TTCAGTTATTTGTGTTTGAA+AGG + tig0024289:63340-63359 Msa1415960:intron 25.0%
!!! AACATCAACTTTTTTTACCA+GGG - tig0024289:63592-63611 None:intergenic 25.0%
!!! TAACATCAACTTTTTTTACC+AGG - tig0024289:63593-63612 None:intergenic 25.0%
!!! AACTTAGGATTTTAAAGGAA+AGG - tig0024289:64096-64115 None:intergenic 25.0%
! ATGAAAATAAGCAAAATGAC+TGG - tig0024289:64121-64140 None:intergenic 25.0%
!! TATTTTCATATCACGTCTAT+TGG + tig0024289:64132-64151 Msa1415960:intron 25.0%
!!! AGTAATATTTACTTTTTGGG+AGG + tig0024289:64175-64194 Msa1415960:intron 25.0%
!!! GTAATATTTACTTTTTGGGA+GGG + tig0024289:64176-64195 Msa1415960:intron 25.0%
! TCAGTTTATTAATTTCATCG+TGG + tig0024289:64388-64407 Msa1415960:intron 25.0%
! ATGTTATAATTAGCACTGTA+TGG - tig0024289:64422-64441 None:intergenic 25.0%
!!! AGTCTTTTAAAGGATACAAA+CGG - tig0024289:64508-64527 None:intergenic 25.0%
!! AAAGCAATTGGTTTCTTTAA+GGG + tig0024289:64553-64572 Msa1415960:intron 25.0%
!!! CAGTCGATTATATTTAGTTT+TGG - tig0024289:64740-64759 None:intergenic 25.0%
!!! GGTTTTGTGATCATAATTTT+AGG + tig0024289:64862-64881 Msa1415960:intron 25.0%
!! TTTGTGATCATAATTTTAGG+AGG + tig0024289:64865-64884 Msa1415960:intron 25.0%
!!! TTGTGATCATAATTTTAGGA+GGG + tig0024289:64866-64885 Msa1415960:intron 25.0%
! TTAGGTTAAGCTAAACAATT+AGG + tig0024289:64896-64915 Msa1415960:intron 25.0%
!!! TGTTATGCCATTTTTTTTAC+TGG + tig0024289:65000-65019 Msa1415960:intron 25.0%
! GTGATTTCCAGTAAAAAAAA+TGG - tig0024289:65010-65029 None:intergenic 25.0%
!! GATATTTTTCTTCTTTGCTT+AGG + tig0024289:65125-65144 Msa1415960:intron 25.0%
! ATATACTAATTGTGTGATTG+TGG + tig0024289:65303-65322 Msa1415960:intron 25.0%
! TAATGTATTTCTTAAGAGGA+AGG + tig0024289:65374-65393 Msa1415960:CDS 25.0%
! AGCCATCATCTTAAATAATT+TGG + tig0024289:65972-65991 Msa1415960:intron 25.0%
!!! CATTTTGGTCTCTAAATATA+TGG + tig0024289:66060-66079 Msa1415960:intron 25.0%
! AAGCAACTTTCAAAAATTAG+TGG + tig0024289:66520-66539 Msa1415960:intron 25.0%
! AGCAACTTTCAAAAATTAGT+GGG + tig0024289:66521-66540 Msa1415960:intron 25.0%
! AATAAATTAAGTGTGATCAG+TGG - tig0024289:66572-66591 None:intergenic 25.0%
!! TGCATTTTCCACATTATTTT+GGG - tig0024289:66930-66949 None:intergenic 25.0%
!! ATGCATTTTCCACATTATTT+TGG - tig0024289:66931-66950 None:intergenic 25.0%
!! AGTATATTTTGCTGGAAATT+CGG + tig0024289:66953-66972 Msa1415960:intron 25.0%
!!! AATTTGACTATGTTTTTGAC+TGG + tig0024289:67016-67035 Msa1415960:CDS 25.0%
! AGCTGAATAAGAATGAAATT+CGG + tig0024289:67235-67254 Msa1415960:intron 25.0%
! GGTAAACAAGGTAAAAAAAA+GGG - tig0024289:67670-67689 None:intergenic 25.0%
! TGGTAAACAAGGTAAAAAAA+AGG - tig0024289:67671-67690 None:intergenic 25.0%
!!! ATCTTTTGTTTCTTTCCATA+AGG - tig0024289:68255-68274 None:intergenic 25.0%
!! AAACAAAAGATTCAAGTTCA+TGG + tig0024289:68264-68283 Msa1415960:three_prime_UTR 25.0%
!! ATTTAAAGCAACGAATGATA+TGG + tig0024289:68575-68594 Msa1415960:three_prime_UTR 25.0%
CAAAAGTAGTTTCACAAGTT+TGG - tig0024289:61167-61186 None:intergenic 30.0%
TTGGAAAAACAGAATAAGGT+AGG - tig0024289:61234-61253 None:intergenic 30.0%
!! ATTGATTATTCTGGGATGAT+TGG + tig0024289:61305-61324 Msa1415960:five_prime_UTR 30.0%
!!! ATGATTGGTTTTGGTTCTTT+TGG + tig0024289:61320-61339 Msa1415960:five_prime_UTR 30.0%
!!! TGATTGGTTTTGGTTCTTTT+GGG + tig0024289:61321-61340 Msa1415960:five_prime_UTR 30.0%
TGAATAATTCCTCATTCATG+AGG + tig0024289:61377-61396 Msa1415960:five_prime_UTR 30.0%
CAAGATTAAATGCAAATTGG+GGG - tig0024289:61434-61453 None:intergenic 30.0%
! TTGTGAATTTTTGTTGGGTT+TGG + tig0024289:61463-61482 Msa1415960:five_prime_UTR 30.0%
!! GTGAATTTTGGAAGAAAGTT+AGG + tig0024289:61485-61504 Msa1415960:five_prime_UTR 30.0%
TTTGAATTTGTCCACAATCA+AGG + tig0024289:61575-61594 Msa1415960:five_prime_UTR 30.0%
TTGAATTTGTCCACAATCAA+GGG + tig0024289:61576-61595 Msa1415960:five_prime_UTR 30.0%
TTTATCATGGATCATGTGAT+TGG + tig0024289:61623-61642 Msa1415960:exon 30.0%
ATTGGTGGAAAGTTTAAACT+TGG + tig0024289:61641-61660 Msa1415960:CDS 30.0%
TCAGCTGTTAATATACAAAC+TGG + tig0024289:61807-61826 Msa1415960:intron 30.0%
TGTTAATATACAAACTGGAG+AGG + tig0024289:61812-61831 Msa1415960:CDS 30.0%
TCTTGAAATGAGATGTGAAA+TGG + tig0024289:62102-62121 Msa1415960:intron 30.0%
!! TTTTTGTTATCAGTTAGTGG+TGG + tig0024289:62248-62267 Msa1415960:intron 30.0%
TTGAATAAATCTTCCAGACT+GGG - tig0024289:62483-62502 None:intergenic 30.0%
ATTGAATAAATCTTCCAGAC+TGG - tig0024289:62484-62503 None:intergenic 30.0%
AGACAGACTTACTAATTGAT+CGG - tig0024289:62550-62569 None:intergenic 30.0%
! CCTCTATCAAACTTTTCAAA+AGG - tig0024289:62831-62850 None:intergenic 30.0%
!! CCTTTTGAAAAGTTTGATAG+AGG + tig0024289:62828-62847 Msa1415960:intron 30.0%
AAAAGTTTGATAGAGGAGTA+TGG + tig0024289:62835-62854 Msa1415960:intron 30.0%
! AAAGTTTGATAGAGGAGTAT+GGG + tig0024289:62836-62855 Msa1415960:intron 30.0%
! CCCTATCATAATTCTTTTCT+AGG - tig0024289:62897-62916 None:intergenic 30.0%
CTATAGACAAGTATAACACA+TGG + tig0024289:62920-62939 Msa1415960:intron 30.0%
! CTGTCATATATTTTCTTGTG+TGG + tig0024289:63016-63035 Msa1415960:intron 30.0%
CATAGTTGAAGAGTCTAAAT+AGG + tig0024289:63049-63068 Msa1415960:intron 30.0%
GTATGACCTGAATATTAAGA+GGG + tig0024289:63179-63198 Msa1415960:intron 30.0%
TATGACCTGAATATTAAGAG+GGG + tig0024289:63180-63199 Msa1415960:intron 30.0%
ATATTCCCCTCTTAATATTC+AGG - tig0024289:63188-63207 None:intergenic 30.0%
GAATATTAAGAGGGGAATAT+TGG + tig0024289:63188-63207 Msa1415960:intron 30.0%
TGGAGAAAGATATAAATCGT+AGG + tig0024289:63285-63304 Msa1415960:intron 30.0%
! ATTTCCTTCAAACTTTTGAG+AGG - tig0024289:63368-63387 None:intergenic 30.0%
! TTTAGAGATGAGAATTTTGC+AGG + tig0024289:63415-63434 Msa1415960:intron 30.0%
! TTAGAGATGAGAATTTTGCA+GGG + tig0024289:63416-63435 Msa1415960:intron 30.0%
GAAAAGATATGATTGTGCAA+TGG + tig0024289:63456-63475 Msa1415960:intron 30.0%
! TAGTTTTTGACAGAATGCAA+CGG + tig0024289:63853-63872 Msa1415960:intron 30.0%
!!! CATTTGATTCGTGGTTTTAA+TGG + tig0024289:63879-63898 Msa1415960:intron 30.0%
!! GTTTTAATGGTTGTGTAGTT+TGG + tig0024289:63892-63911 Msa1415960:intron 30.0%
! TTGTGTAGTTTGGATGATTT+TGG + tig0024289:63902-63921 Msa1415960:intron 30.0%
TACCCATTATAATGAGTCTT+CGG + tig0024289:63960-63979 Msa1415960:intron 30.0%
ATGACATCAAAATACAAGCT+TGG + tig0024289:63989-64008 Msa1415960:intron 30.0%
TGGTTGAGTAACATTTGAAT+TGG + tig0024289:64009-64028 Msa1415960:intron 30.0%
! TGGTGAACTTAGGATTTTAA+AGG - tig0024289:64101-64120 None:intergenic 30.0%
CAACTCAACATTATACTCAA+GGG - tig0024289:64298-64317 None:intergenic 30.0%
TATAATTAGCACTGTATGGT+TGG - tig0024289:64418-64437 None:intergenic 30.0%
! CAAAGCAATTGGTTTCTTTA+AGG + tig0024289:64552-64571 Msa1415960:intron 30.0%
GTGCTAATGTATTTCTTAAG+AGG + tig0024289:65370-65389 Msa1415960:CDS 30.0%
CAAGTCATAATTACCTCTAT+TGG - tig0024289:65556-65575 None:intergenic 30.0%
AAAAAAAAACTGACAGATGC+AGG - tig0024289:65583-65602 None:intergenic 30.0%
AATATTTCAATCACACTCAG+TGG + tig0024289:65898-65917 Msa1415960:intron 30.0%
GATGTACAATACTAACTTAG+AGG + tig0024289:66016-66035 Msa1415960:intron 30.0%
AAGCATTCCTAAAGATGTTA+TGG - tig0024289:66428-66447 None:intergenic 30.0%
! ATAACATCTTTAGGAATGCT+TGG + tig0024289:66427-66446 Msa1415960:intron 30.0%
GCAACTTTCAAAAATTAGTG+GGG + tig0024289:66522-66541 Msa1415960:intron 30.0%
!!! ATAACATTTTAGGGTGTGTT+TGG - tig0024289:66676-66695 None:intergenic 30.0%
! AGATTTTACATGAGACAGAA+GGG - tig0024289:66724-66743 None:intergenic 30.0%
! AAGATTTTACATGAGACAGA+AGG - tig0024289:66725-66744 None:intergenic 30.0%
AAGTATGATACAAACTCAGA+GGG - tig0024289:66813-66832 None:intergenic 30.0%
ACATACCTTCTCGAATAAAA+AGG - tig0024289:66905-66924 None:intergenic 30.0%
GTATGTTACCCAAAATAATG+TGG + tig0024289:66919-66938 Msa1415960:intron 30.0%
! ATGCATTCAGTATATTTTGC+TGG + tig0024289:66945-66964 Msa1415960:intron 30.0%
! ATCTTTTGTGCTTTATGTAC+TGG - tig0024289:67196-67215 None:intergenic 30.0%
! TTCATGCTATTTGTTTCAGT+TGG + tig0024289:67391-67410 Msa1415960:intron 30.0%
! TCATGCTATTTGTTTCAGTT+GGG + tig0024289:67392-67411 Msa1415960:intron 30.0%
!! ATATCGAGTTGAATTGTGTT+GGG - tig0024289:67953-67972 None:intergenic 30.0%
! TGGATATGCAATGTTATTTG+TGG + tig0024289:68482-68501 Msa1415960:three_prime_UTR 30.0%
ACAGTGAATGTAGTTTAACA+AGG + tig0024289:68525-68544 Msa1415960:three_prime_UTR 30.0%
TTCACAAGTTTGGAGATGAA+CGG - tig0024289:61157-61176 None:intergenic 35.0%
GAATAAGGTAGGAAAAGAGA+AGG - tig0024289:61223-61242 None:intergenic 35.0%
!!! TATTCTGGGATGATTGGTTT+TGG + tig0024289:61311-61330 Msa1415960:five_prime_UTR 35.0%
!!! GATTGGTTTTGGTTCTTTTG+GGG + tig0024289:61322-61341 Msa1415960:five_prime_UTR 35.0%
TTGAAACATCCTCATGAATG+AGG - tig0024289:61389-61408 None:intergenic 35.0%
!!! TTGTTGGGTTTGGTGAATTT+TGG + tig0024289:61473-61492 Msa1415960:five_prime_UTR 35.0%
TTGTGGACAAATTCAAACAG+AGG - tig0024289:61572-61591 None:intergenic 35.0%
GGGCTGAATTCAATATTTGA+AGG + tig0024289:61596-61615 Msa1415960:five_prime_UTR 35.0%
GTGGAAAGTTTAAACTTGGA+AGG + tig0024289:61645-61664 Msa1415960:CDS 35.0%
! AAAATTGGGAGTGGTTCTTT+TGG + tig0024289:61668-61687 Msa1415960:CDS 35.0%
!! TCTTTTGGAGAGCTCTATTT+AGG + tig0024289:61683-61702 Msa1415960:CDS 35.0%
TAATATACAAACTGGAGAGG+AGG + tig0024289:61815-61834 Msa1415960:CDS 35.0%
CTTGCGATATCATTTATCGA+AGG + tig0024289:62022-62041 Msa1415960:intron 35.0%
! GTTAACTTTTGGTCAATAGG+TGG + tig0024289:62070-62089 Msa1415960:intron 35.0%
TCCAATTTCCAATTGTCTCA+CGG + tig0024289:62296-62315 Msa1415960:intron 35.0%
GGTTCTGTCAAAAATATTCC+AGG + tig0024289:62317-62336 Msa1415960:intron 35.0%
CTGTATATGATTCTTCAAGG+AGG + tig0024289:62384-62403 Msa1415960:CDS 35.0%
GTTGAATACATGCATTCAAG+AGG + tig0024289:62666-62685 Msa1415960:CDS 35.0%
!! AATTGTCTGGCTTTATGTCT+CGG - tig0024289:62701-62720 None:intergenic 35.0%
! AAAGCCAGACAATTTTCTGA+TGG + tig0024289:62707-62726 Msa1415960:CDS 35.0%
! AAGCCAGACAATTTTCTGAT+GGG + tig0024289:62708-62727 Msa1415960:CDS 35.0%
ATTGAACCCACAATAGACAA+AGG - tig0024289:62805-62824 None:intergenic 35.0%
AGACAAGTATAACACATGGT+AGG + tig0024289:62924-62943 Msa1415960:intron 35.0%
GACAAGTATAACACATGGTA+GGG + tig0024289:62925-62944 Msa1415960:intron 35.0%
ATGTTCTTACTAGCATATCC+AGG + tig0024289:62985-63004 Msa1415960:intron 35.0%
!! ATTTTCTTGTGTGGGTTGTA+TGG + tig0024289:63025-63044 Msa1415960:intron 35.0%
GGTATGACCTGAATATTAAG+AGG + tig0024289:63178-63197 Msa1415960:intron 35.0%
TATTAAGAGGGGAATATTGG+AGG + tig0024289:63191-63210 Msa1415960:intron 35.0%
CATATTAATGCCACAACACA+AGG + tig0024289:63215-63234 Msa1415960:intron 35.0%
CTTGGTATGATAGATTCAAG+GGG - tig0024289:63254-63273 None:intergenic 35.0%
GCTTGGTATGATAGATTCAA+GGG - tig0024289:63255-63274 None:intergenic 35.0%
! TTCAAGTGAGTTGGATGAAA+TGG + tig0024289:63309-63328 Msa1415960:intron 35.0%
AAACACTTGACTTCTCTTGT+TGG - tig0024289:63397-63416 None:intergenic 35.0%
! TAGAGATGAGAATTTTGCAG+GGG + tig0024289:63417-63436 Msa1415960:intron 35.0%
! TGTAAATTCGTAGTCTTGAC+AGG - tig0024289:63489-63508 None:intergenic 35.0%
! TGTTTTTCCTACTCTCTCTT+GGG - tig0024289:63513-63532 None:intergenic 35.0%
AGAATCTTGTCTAACATGTG+AGG + tig0024289:63553-63572 Msa1415960:intron 35.0%
TGCTTGATTGCACTATGTAA+CGG - tig0024289:63774-63793 None:intergenic 35.0%
TGCCGAAGACTCATTATAAT+GGG - tig0024289:63965-63984 None:intergenic 35.0%
ATGCCGAAGACTCATTATAA+TGG - tig0024289:63966-63985 None:intergenic 35.0%
GAAAAACTCAAGGACAAACA+TGG - tig0024289:64048-64067 None:intergenic 35.0%
GAGTACTCTTGAAAAACTCA+AGG - tig0024289:64058-64077 None:intergenic 35.0%
AGCGTAAGTCATTGAACTAA+AGG - tig0024289:64211-64230 None:intergenic 35.0%
TTTCCTAAATTTGTCGTGCA+GGG - tig0024289:64264-64283 None:intergenic 35.0%
ATTTCCTAAATTTGTCGTGC+AGG - tig0024289:64265-64284 None:intergenic 35.0%
CCAACTCAACATTATACTCA+AGG - tig0024289:64299-64318 None:intergenic 35.0%
CCTTGAGTATAATGTTGAGT+TGG + tig0024289:64296-64315 Msa1415960:intron 35.0%
! TTTGACATGTGCACACATTT+TGG + tig0024289:64341-64360 Msa1415960:intron 35.0%
! CATTTTATCGTGTTAACGCT+AGG - tig0024289:64471-64490 None:intergenic 35.0%
GGATACAAACGGTTAAGTTT+AGG - tig0024289:64497-64516 None:intergenic 35.0%
! TCATTTTGTAGTCTCCTTGT+TGG + tig0024289:64528-64547 Msa1415960:intron 35.0%
! CAATTGGTTTCTTTAAGGGT+GGG + tig0024289:64557-64576 Msa1415960:intron 35.0%
!!! GATCCCTATATTTTTTCGCA+AGG - tig0024289:64811-64830 None:intergenic 35.0%
!! TTTTAGGAGGGAGCAATATT+AGG + tig0024289:64878-64897 Msa1415960:intron 35.0%
TGAGATCAATGGGAATTTGT+GGG - tig0024289:65090-65109 None:intergenic 35.0%
TTGAGATCAATGGGAATTTG+TGG - tig0024289:65091-65110 None:intergenic 35.0%
AGGGAAAATAAGAACCTTAC+AGG + tig0024289:65145-65164 Msa1415960:intron 35.0%
AAATAAGAACCTTACAGGCA+CGG + tig0024289:65150-65169 Msa1415960:CDS 35.0%
! CGGTAAGTGATATTTTATGC+TGG + tig0024289:65207-65226 Msa1415960:intron 35.0%
!! ATGCTGGTTTGTTACTTTCT+CGG + tig0024289:65223-65242 Msa1415960:intron 35.0%
TACTAATTGTGTGATTGTGG+TGG + tig0024289:65306-65325 Msa1415960:intron 35.0%
ATGCAATAGTGCTCAATAAC+TGG - tig0024289:65643-65662 None:intergenic 35.0%
CAGTTGAATGCAGGAAATAT+AGG - tig0024289:65736-65755 None:intergenic 35.0%
CATTCAACTGTTAGCACTTA+GGG + tig0024289:65746-65765 Msa1415960:intron 35.0%
TAGCCAGAAACTTTGAATAG+TGG + tig0024289:65923-65942 Msa1415960:intron 35.0%
AGCCAGAAACTTTGAATAGT+GGG + tig0024289:65924-65943 Msa1415960:intron 35.0%
!! AGCCAAGCGTTTTTGTTTAA+AGG + tig0024289:66400-66419 Msa1415960:intron 35.0%
AGCCTTTAAACAAAAACGCT+TGG - tig0024289:66405-66424 None:intergenic 35.0%
AAAGGCTCCATAACATCTTT+AGG + tig0024289:66418-66437 Msa1415960:intron 35.0%
AAATTAAGTGTGATCAGTGG+CGG - tig0024289:66569-66588 None:intergenic 35.0%
GAAGTATGATACAAACTCAG+AGG - tig0024289:66814-66833 None:intergenic 35.0%
CTTCTCGAATAAAAAGGTCT+CGG - tig0024289:66899-66918 None:intergenic 35.0%
! ATATTTTGCTGGAAATTCGG+TGG + tig0024289:66956-66975 Msa1415960:intron 35.0%
CATAAAGCACAAAAGATTCC+AGG + tig0024289:67199-67218 Msa1415960:CDS 35.0%
ATCATCATAAGTCCTATGTC+TGG - tig0024289:67509-67528 None:intergenic 35.0%
! ACATAGGACTTATGATGATG+TGG + tig0024289:67510-67529 Msa1415960:CDS 35.0%
!! TGAGAATGTTGTTTCCTGTT+TGG + tig0024289:67587-67606 Msa1415960:intron 35.0%
!! CATATCGAGTTGAATTGTGT+TGG - tig0024289:67954-67973 None:intergenic 35.0%
CAACACAATTCAACTCGATA+TGG + tig0024289:67952-67971 Msa1415960:CDS 35.0%
!! ATTTGGCTTTGATGATACCA+TGG - tig0024289:67995-68014 None:intergenic 35.0%
ACTATCAGGAAGTAATCTCA+AGG + tig0024289:68174-68193 Msa1415960:exon 35.0%
CTATCAGGAAGTAATCTCAA+GGG + tig0024289:68175-68194 Msa1415960:exon 35.0%
!! TTTCTAAATTTTGGCACACC+TGG + tig0024289:68217-68236 Msa1415960:three_prime_UTR 35.0%
!! TTCTAAATTTTGGCACACCT+GGG + tig0024289:68218-68237 Msa1415960:three_prime_UTR 35.0%
AATTACCATTGAGGTCACAA+TGG + tig0024289:68296-68315 Msa1415960:three_prime_UTR 35.0%
!! AATCTTCTGAAGCAATCTGA+GGG - tig0024289:68350-68369 None:intergenic 35.0%
!! AAATCTTCTGAAGCAATCTG+AGG - tig0024289:68351-68370 None:intergenic 35.0%
!! TTGAGTTGTAGCAAGTTTTG+TGG + tig0024289:68462-68481 Msa1415960:three_prime_UTR 35.0%
!! AGGAAAAGAGAAGGTATCTG+TGG - tig0024289:61214-61233 None:intergenic 40.0%
!!! TTTTGGTTCTTTTGGGGTGA+AGG + tig0024289:61328-61347 Msa1415960:five_prime_UTR 40.0%
GGACAAATTCAAACAGAGGA+AGG - tig0024289:61568-61587 None:intergenic 40.0%
TTGAATTCAGCCCTTGATTG+TGG - tig0024289:61589-61608 None:intergenic 40.0%
ATCATGGATCATGTGATTGG+TGG + tig0024289:61626-61645 Msa1415960:exon 40.0%
TTGGTCAATAGGTGGATGAT+TGG + tig0024289:62078-62097 Msa1415960:intron 40.0%
AGCTGCAAAACAGAATTGTG+AGG - tig0024289:62142-62161 None:intergenic 40.0%
ACCGTGAGACAATTGGAAAT+TGG - tig0024289:62300-62319 None:intergenic 40.0%
TTTGACTCATAGTGAAGCTG+TGG - tig0024289:62363-62382 None:intergenic 40.0%
ATGATTCTTCAAGGAGGAAC+TGG + tig0024289:62390-62409 Msa1415960:CDS 40.0%
! AACTCCAAACCATTTGAGGT+GGG - tig0024289:62421-62440 None:intergenic 40.0%
! CTCAAATGGTTTGGAGTTGA+GGG + tig0024289:62423-62442 Msa1415960:CDS 40.0%
CCGACTTCAAAGTGAATTTC+CGG - tig0024289:62515-62534 None:intergenic 40.0%
!! CCGGAAATTCACTTTGAAGT+CGG + tig0024289:62512-62531 Msa1415960:CDS 40.0%
AGTAAGTCTGTCTGTCAAGT+TGG + tig0024289:62557-62576 Msa1415960:intron 40.0%
TTCTTACTAGCATATCCAGG+AGG + tig0024289:62988-63007 Msa1415960:intron 40.0%
! ACATTTGTTGAGTCCCACAT+TGG + tig0024289:63151-63170 Msa1415960:intron 40.0%
GGTCATACCATATCCAATGT+GGG - tig0024289:63167-63186 None:intergenic 40.0%
AGGTCATACCATATCCAATG+TGG - tig0024289:63168-63187 None:intergenic 40.0%
CGCTTGGTATGATAGATTCA+AGG - tig0024289:63256-63275 None:intergenic 40.0%
ATCGTAGGATTCAAGTGAGT+TGG + tig0024289:63300-63319 Msa1415960:intron 40.0%
GGTACCTCTCAAAAGTTTGA+AGG + tig0024289:63361-63380 Msa1415960:intron 40.0%
TTTACAACCCAAGAGAGAGT+AGG + tig0024289:63503-63522 Msa1415960:intron 40.0%
! GTGTTTTTCCTACTCTCTCT+TGG - tig0024289:63514-63533 None:intergenic 40.0%
! CTGTTGCTCAGTTCTTTTCA+AGG - tig0024289:63620-63639 None:intergenic 40.0%
TCAAGGACAAACATGGAAAC+AGG - tig0024289:64041-64060 None:intergenic 40.0%
!! GGATTTTAAAGGAAAGGTCC+AGG - tig0024289:64090-64109 None:intergenic 40.0%
GCAAAATGACTGGTGAACTT+AGG - tig0024289:64111-64130 None:intergenic 40.0%
GCATGCAAGTGACTTTATGT+TGG + tig0024289:64363-64382 Msa1415960:intron 40.0%
TCCTTGTTGGTCAAAGCAAT+TGG + tig0024289:64541-64560 Msa1415960:intron 40.0%
ACCAATTGCTTTGACCAACA+AGG - tig0024289:64545-64564 None:intergenic 40.0%
! GCAATTGGTTTCTTTAAGGG+TGG + tig0024289:64556-64575 Msa1415960:intron 40.0%
GGTGGGAATTTCTTAATCGT+TGG + tig0024289:64574-64593 Msa1415960:intron 40.0%
CACACTCTGTATCTCATTTC+AGG + tig0024289:64766-64785 Msa1415960:intron 40.0%
TCGGCCTTGCGAAAAAATAT+AGG + tig0024289:64804-64823 Msa1415960:CDS 40.0%
CGGCCTTGCGAAAAAATATA+GGG + tig0024289:64805-64824 Msa1415960:CDS 40.0%
ATAGGGATCTTCAGACTCAT+AGG + tig0024289:64822-64841 Msa1415960:CDS 40.0%
GATCACAAAACCAACCTGTA+CGG - tig0024289:64854-64873 None:intergenic 40.0%
TGGCATAACAGCCTGTTAAA+GGG - tig0024289:64990-65009 None:intergenic 40.0%
ATGGCATAACAGCCTGTTAA+AGG - tig0024289:64991-65010 None:intergenic 40.0%
!! TCACTTACCGATTCCAAGAT+GGG - tig0024289:65197-65216 None:intergenic 40.0%
!! ATCACTTACCGATTCCAAGA+TGG - tig0024289:65198-65217 None:intergenic 40.0%
!! GGTTTGTTACTTTCTCGGTT+AGG + tig0024289:65228-65247 Msa1415960:intron 40.0%
!!! TTTCCTTTTTCAGTCTTCCC+TGG + tig0024289:65464-65483 Msa1415960:intron 40.0%
CGATAAAATCAGTGAGACGA+AGG + tig0024289:65522-65541 Msa1415960:CDS 40.0%
!! GAAGGTATCAACTCCAATAG+AGG + tig0024289:65540-65559 Msa1415960:CDS 40.0%
AAGTGCTAACAGTTGAATGC+AGG - tig0024289:65745-65764 None:intergenic 40.0%
GCATTCAACTGTTAGCACTT+AGG + tig0024289:65745-65764 Msa1415960:intron 40.0%
! TGTGTTTGGATGGAGTGTTT+AGG + tig0024289:65769-65788 Msa1415960:intron 40.0%
! TTTGGATGGAGTGTTTAGGA+GGG + tig0024289:65773-65792 Msa1415960:intron 40.0%
GCCAGAAACTTTGAATAGTG+GGG + tig0024289:65925-65944 Msa1415960:intron 40.0%
CCAGAAACTTTGAATAGTGG+GGG + tig0024289:65926-65945 Msa1415960:intron 40.0%
CTCAACACTTTCTGTTGTGT+TGG - tig0024289:66374-66393 None:intergenic 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - tig0024289:66658-66677 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - tig0024289:66662-66681 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - tig0024289:66668-66687 None:intergenic 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG - tig0024289:66669-66688 None:intergenic 40.0%
! CGAGACCTTTTTATTCGAGA+AGG + tig0024289:66897-66916 Msa1415960:CDS 40.0%
! TTGAAGTATCCACAGAGTAG+TGG + tig0024289:67045-67064 Msa1415960:CDS 40.0%
! TTTTTGTTGGTCGCTTACTG+TGG + tig0024289:67119-67138 Msa1415960:intron 40.0%
TTTCAGTTGGGAGAGAGATT+CGG + tig0024289:67404-67423 Msa1415960:intron 40.0%
GAGATTCGGGAGAAATTATC+TGG + tig0024289:67418-67437 Msa1415960:CDS 40.0%
AACGTCTTGTCAAACCAAAC+AGG - tig0024289:67604-67623 None:intergenic 40.0%
TCATCAAAGCCAAATTCCTC+AGG + tig0024289:68000-68019 Msa1415960:CDS 40.0%
GCTTGTTTCGTATCATACAC+AGG - tig0024289:68087-68106 None:intergenic 40.0%
! AAGCAACTTTTGCTCGCAAT+GGG + tig0024289:68103-68122 Msa1415960:CDS 40.0%
! GAGATTACTTCCTGATAGTG+AGG - tig0024289:68173-68192 None:intergenic 40.0%
ATAAGGCTTCTTGAAATCCC+AGG - tig0024289:68238-68257 None:intergenic 40.0%
TGGGATTTCAAGAAGCCTTA+TGG + tig0024289:68237-68256 Msa1415960:three_prime_UTR 40.0%
AGGGGATCTAGAAATGATGT+CGG - tig0024289:68331-68350 None:intergenic 40.0%
!! ATCTTCTGAAGCAATCTGAG+GGG - tig0024289:68349-68368 None:intergenic 40.0%
!! AACGAATGATATGGTGCTGT+AGG + tig0024289:68584-68603 Msa1415960:three_prime_UTR 40.0%
ACAAGTTTGGAGATGAACGG+AGG - tig0024289:61154-61173 None:intergenic 45.0%
TTGGGGTGAAGGAATGTAGT+TGG + tig0024289:61339-61358 Msa1415960:five_prime_UTR 45.0%
CTTGGAAGGAAAATTGGGAG+TGG + tig0024289:61659-61678 Msa1415960:CDS 45.0%
TATACAAACTGGAGAGGAGG+TGG + tig0024289:61818-61837 Msa1415960:CDS 45.0%
CGCAAGCATGCTCAATTTCA+TGG - tig0024289:62008-62027 None:intergenic 45.0%
TGACAGAACCGTGAGACAAT+TGG - tig0024289:62307-62326 None:intergenic 45.0%
! ACTCCAAACCATTTGAGGTG+GGG - tig0024289:62420-62439 None:intergenic 45.0%
CAACTCCAAACCATTTGAGG+TGG - tig0024289:62422-62441 None:intergenic 45.0%
CCTCAACTCCAAACCATTTG+AGG - tig0024289:62425-62444 None:intergenic 45.0%
! CCTCAAATGGTTTGGAGTTG+AGG + tig0024289:62422-62441 Msa1415960:CDS 45.0%
! TGAGGGAGAGTACAATGTCA+TGG + tig0024289:62440-62459 Msa1415960:CDS 45.0%
AGGCCCATCAGAAAATTGTC+TGG - tig0024289:62714-62733 None:intergenic 45.0%
!! GACAATTTTCTGATGGGCCT+CGG + tig0024289:62714-62733 Msa1415960:CDS 45.0%
!! CTTGATTTGCTTTACGTCCG+AGG - tig0024289:62734-62753 None:intergenic 45.0%
TATATGACAGCGTTACCTCC+TGG - tig0024289:63006-63025 None:intergenic 45.0%
GTTGAGTCCCACATTGGATA+TGG + tig0024289:63157-63176 Msa1415960:intron 45.0%
AAACTGTGCACCTTGTGTTG+TGG - tig0024289:63228-63247 None:intergenic 45.0%
CAACACAAGGTGCACAGTTT+CGG + tig0024289:63228-63247 Msa1415960:intron 45.0%
CATACCAAGCGACGAAGAAA+TGG + tig0024289:63265-63284 Msa1415960:intron 45.0%
TTCTCCATTTCTTCGTCGCT+TGG - tig0024289:63272-63291 None:intergenic 45.0%
! AGAATTTTGCAGGGGATGAG+TGG + tig0024289:63425-63444 Msa1415960:intron 45.0%
GAGGAGTCTAATAGAAACCC+TGG + tig0024289:63572-63591 Msa1415960:intron 45.0%
GCAGGGATCTATGCTATGAA+CGG - tig0024289:64247-64266 None:intergenic 45.0%
GATCCCTGCACGACAAATTT+AGG + tig0024289:64258-64277 Msa1415960:intron 45.0%
!! CAGGTGTATGCCATTGACTT+CGG + tig0024289:64785-64804 Msa1415960:intron 45.0%
CGCATTTGCATCCCTTTAAC+AGG + tig0024289:64976-64995 Msa1415960:intron 45.0%
GTCAACACCCATCTTGGAAT+CGG + tig0024289:65187-65206 Msa1415960:CDS 45.0%
ACAAAGTCGAAGGGATGATC+TGG + tig0024289:65333-65352 Msa1415960:CDS 45.0%
! AGGGATGATCTGGAATCTCT+TGG + tig0024289:65343-65362 Msa1415960:CDS 45.0%
TTGCCAGGGAAGACTGAAAA+AGG - tig0024289:65470-65489 None:intergenic 45.0%
!! TTTTTCAGTCTTCCCTGGCA+AGG + tig0024289:65469-65488 Msa1415960:intron 45.0%
GTTAGCACTTAGGGTGTGTT+TGG + tig0024289:65755-65774 Msa1415960:intron 45.0%
! GTTTGGATGGAGTGTTTAGG+AGG + tig0024289:65772-65791 Msa1415960:intron 45.0%
! TTGGATGGAGTGTTTAGGAG+GGG + tig0024289:65774-65793 Msa1415960:intron 45.0%
CCCCCACTATTCAAAGTTTC+TGG - tig0024289:65929-65948 None:intergenic 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - tig0024289:66657-66676 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - tig0024289:66659-66678 None:intergenic 45.0%
GAGACAGAAGGGAAATGAAG+AGG - tig0024289:66713-66732 None:intergenic 45.0%
TGTCCTCAAACCTCAACGAA+CGG - tig0024289:66845-66864 None:intergenic 45.0%
TGGTTGTTGTAACGACAGCA+TGG + tig0024289:67139-67158 Msa1415960:intron 45.0%
CTGTCACAGCACATATTAGC+AGG - tig0024289:67264-67283 None:intergenic 45.0%
TTCAGTTGGGAGAGAGATTC+GGG + tig0024289:67405-67424 Msa1415960:intron 45.0%
! TTGTTGAAGCATTCACCCAG+AGG + tig0024289:67446-67465 Msa1415960:CDS 45.0%
GCAAATTCTAGCCCTCATCA+CGG + tig0024289:67475-67494 Msa1415960:CDS 45.0%
AAGCAGTTCAAGAAGAGCCA+TGG + tig0024289:67975-67994 Msa1415960:CDS 45.0%
GAATGGTCACCTGAGGAATT+TGG - tig0024289:68012-68031 None:intergenic 45.0%
AATTCCTCAGGTGACCATTC+TGG + tig0024289:68012-68031 Msa1415960:CDS 45.0%
! CAAGCAACTTTTGCTCGCAA+TGG + tig0024289:68102-68121 Msa1415960:CDS 45.0%
TCATGCCATTGTGACCTCAA+TGG - tig0024289:68304-68323 None:intergenic 45.0%
GGGGATCTAGAAATGATGTC+GGG - tig0024289:68330-68349 None:intergenic 45.0%
!!! TAAAAATGATATTTTTTTTT+TGG - tig0024289:61253-61272 None:intergenic 5.0%
TGGAGATGAACGGAGGAAGT+GGG - tig0024289:61147-61166 None:intergenic 50.0%
TTGGAGATGAACGGAGGAAG+TGG - tig0024289:61148-61167 None:intergenic 50.0%
TGTGGTGTGCTGGATGAAAG+AGG - tig0024289:61196-61215 None:intergenic 50.0%
!! AGAAGGTATCTGTGGTGTGC+TGG - tig0024289:61206-61225 None:intergenic 50.0%
TCCAGGAATCTGTGAAGACC+AGG + tig0024289:62334-62353 Msa1415960:intron 50.0%
ATAGTGAAGCTGTGGATGCC+TGG - tig0024289:62355-62374 None:intergenic 50.0%
ATCCCCCACCTCAAATGGTT+TGG + tig0024289:62414-62433 Msa1415960:CDS 50.0%
! CTCCAAACCATTTGAGGTGG+GGG - tig0024289:62419-62438 None:intergenic 50.0%
GTCATGGTCATCGACCTTCT+TGG + tig0024289:62456-62475 Msa1415960:CDS 50.0%
CAAGCAACTGCAAGCTAGTC+AGG + tig0024289:63788-63807 Msa1415960:intron 50.0%
! CAACGGCGTCATTTGATTCG+TGG + tig0024289:63870-63889 Msa1415960:intron 50.0%
! AGAGTACTCTCACTTCGTCC+TGG + tig0024289:64069-64088 Msa1415960:intron 50.0%
TTTCGCAAGGCCGAAGTCAA+TGG - tig0024289:64798-64817 None:intergenic 50.0%
CTCATAGGCACATACCGTAC+AGG + tig0024289:64837-64856 Msa1415960:CDS 50.0%
TAGGCACATACCGTACAGGT+TGG + tig0024289:64841-64860 Msa1415960:intron 50.0%
GCAAGTGTCAACACCCATCT+TGG + tig0024289:65181-65200 Msa1415960:CDS 50.0%
TGGTGGCAGAACAAAGTCGA+AGG + tig0024289:65323-65342 Msa1415960:intron 50.0%
GGTGGCAGAACAAAGTCGAA+GGG + tig0024289:65324-65343 Msa1415960:intron 50.0%
GCACTTAGGGTGTGTTTGGA+TGG + tig0024289:65759-65778 Msa1415960:intron 50.0%
! ATGGAGTGTTTAGGAGGGGA+GGG + tig0024289:65778-65797 Msa1415960:intron 50.0%
TGGATTGAGGGTTTAGGAGG+GGG - tig0024289:66656-66675 None:intergenic 50.0%
TCCACTATTGCCGTTCGTTG+AGG + tig0024289:66832-66851 Msa1415960:CDS 50.0%
ACCTCAACGAACGGCAATAG+TGG - tig0024289:66836-66855 None:intergenic 50.0%
TTGCCGTTCGTTGAGGTTTG+AGG + tig0024289:66839-66858 Msa1415960:CDS 50.0%
TCGGTGGTTGTGAATTGACG+TGG + tig0024289:66972-66991 Msa1415960:intron 50.0%
CGGTGGTTGTGAATTGACGT+GGG + tig0024289:66973-66992 Msa1415960:intron 50.0%
TTGTAACGACAGCATGGCAC+TGG + tig0024289:67145-67164 Msa1415960:intron 50.0%
CAGCTGAAAGACAACAGACC+TGG - tig0024289:67220-67239 None:intergenic 50.0%
AGAATTTGCGCGGTTCCTCT+GGG - tig0024289:67464-67483 None:intergenic 50.0%
TAGAATTTGCGCGGTTCCTC+TGG - tig0024289:67465-67484 None:intergenic 50.0%
GATGAGGGCTAGAATTTGCG+CGG - tig0024289:67474-67493 None:intergenic 50.0%
TGGTGTGTTCACCGTGATGA+GGG - tig0024289:67489-67508 None:intergenic 50.0%
ACGGTGAACACACCAGACAT+AGG + tig0024289:67494-67513 Msa1415960:CDS 50.0%
TGAACTCTATGTGCGCCAGA+TGG - tig0024289:68063-68082 None:intergenic 50.0%
AGCTCCTCAGAGGATCATCA+CGG - tig0024289:68143-68162 None:intergenic 50.0%
! GCTTTGAGCTCCTCACTATC+AGG + tig0024289:68160-68179 Msa1415960:CDS 50.0%
!! CGGAGGAAGTGGGTCTTGTT+TGG - tig0024289:61137-61156 None:intergenic 55.0%
AGAGGAGGTGGCTGTTAAGC+TGG + tig0024289:61830-61849 Msa1415960:CDS 55.0%
! GCCTGGTCTTCACAGATTCC+TGG - tig0024289:62338-62357 None:intergenic 55.0%
CTGGAATCCCCCACCTCAAA+TGG + tig0024289:62409-62428 Msa1415960:CDS 55.0%
CTTCCAGACTGGGTCCAAGA+AGG - tig0024289:62473-62492 None:intergenic 55.0%
TCTTCCCTGGCAAGGACTGA+GGG + tig0024289:65477-65496 Msa1415960:CDS 55.0%
! GATGGAGTGTTTAGGAGGGG+AGG + tig0024289:65777-65796 Msa1415960:intron 55.0%
! TGGAGTGTTTAGGAGGGGAG+GGG + tig0024289:65779-65798 Msa1415960:intron 55.0%
TGTTTAGGAGGGGAGGGGAA+GGG + tig0024289:65784-65803 Msa1415960:intron 55.0%
GGGGCACAGATAGCTTAACG+TGG + tig0024289:66541-66560 Msa1415960:intron 55.0%
TGAGGGTTTAGGAGGGGGAA+GGG - tig0024289:66651-66670 None:intergenic 55.0%
TTGAGGGTTTAGGAGGGGGA+AGG - tig0024289:66652-66671 None:intergenic 55.0%
!! GACGTGGGCATTGATCATGC+AGG + tig0024289:66988-67007 Msa1415960:intron 55.0%
CTAGAGCTGCCACTACTCTG+TGG - tig0024289:67057-67076 None:intergenic 55.0%
! CAGAGTAGTGGCAGCTCTAG+AGG + tig0024289:67057-67076 Msa1415960:CDS 55.0%
!! GTAGTGGCAGCTCTAGAGGA+CGG + tig0024289:67061-67080 Msa1415960:CDS 55.0%
!! TAGTGGCAGCTCTAGAGGAC+GGG + tig0024289:67062-67081 Msa1415960:CDS 55.0%
CTGGTGTGTTCACCGTGATG+AGG - tig0024289:67490-67509 None:intergenic 55.0%
AGGTGACCATTCTGGCAGGA+TGG + tig0024289:68020-68039 Msa1415960:CDS 55.0%
TTGTGGCCATCCTGCCAGAA+TGG - tig0024289:68029-68048 None:intergenic 55.0%
CTCTATGTGCGCCAGATGGA+CGG - tig0024289:68059-68078 None:intergenic 55.0%
GCTCGCAATGGGTCTATGAG+AGG + tig0024289:68114-68133 Msa1415960:CDS 55.0%
TCCTCAGAGGATCATCACGG+TGG - tig0024289:68140-68159 None:intergenic 55.0%
AGGAGCTCAAAGCTCCTCAG+AGG - tig0024289:68153-68172 None:intergenic 55.0%
CGACCTTCTTGGACCCAGTC+TGG + tig0024289:62467-62486 Msa1415960:CDS 60.0%
CATAGCGTGCCGTGCCTGTA+AGG - tig0024289:65162-65181 None:intergenic 60.0%
GTCTTCCCTGGCAAGGACTG+AGG + tig0024289:65476-65495 Msa1415960:intron 60.0%
GTGTTTAGGAGGGGAGGGGA+AGG + tig0024289:65783-65802 Msa1415960:intron 60.0%
GTTTAGGAGGGGGAAGGGAG+GGG - tig0024289:66646-66665 None:intergenic 60.0%
GGTTTAGGAGGGGGAAGGGA+GGG - tig0024289:66647-66666 None:intergenic 60.0%
!! ACGACAGCATGGCACTGGCA+AGG + tig0024289:67150-67169 Msa1415960:intron 60.0%
CCTGCCAGAATGGTCACCTG+AGG - tig0024289:68019-68038 None:intergenic 60.0%
CCTCAGGTGACCATTCTGGC+AGG + tig0024289:68016-68035 Msa1415960:CDS 60.0%
TCTGGCAGGATGGCCACAAG+TGG + tig0024289:68030-68049 Msa1415960:CDS 60.0%
CTGGCAGGATGGCCACAAGT+GGG + tig0024289:68031-68050 Msa1415960:CDS 60.0%
TGGCAGGATGGCCACAAGTG+GGG + tig0024289:68032-68051 Msa1415960:CDS 60.0%
GCCACCGTGATGATCCTCTG+AGG + tig0024289:68136-68155 Msa1415960:CDS 60.0%
CCAGCCCTCAGTCCTTGCCA+GGG - tig0024289:65484-65503 None:intergenic 65.0%
TCCAGCCCTCAGTCCTTGCC+AGG - tig0024289:65485-65504 None:intergenic 65.0%
TTAGGAGGGGAGGGGAAGGG+AGG + tig0024289:65787-65806 Msa1415960:intron 65.0%
TAGGAGGGGAGGGGAAGGGA+GGG + tig0024289:65788-65807 Msa1415960:intron 65.0%
GGGTTTAGGAGGGGGAAGGG+AGG - tig0024289:66648-66667 None:intergenic 65.0%
GGCAGGATGGCCACAAGTGG+GGG + tig0024289:68033-68052 Msa1415960:CDS 65.0%
AGATGGACGGCCCCCACTTG+TGG - tig0024289:68046-68065 None:intergenic 65.0%
ACAAGTGGGGGCCGTCCATC+TGG + tig0024289:68045-68064 Msa1415960:CDS 65.0%
CCCTGGCAAGGACTGAGGGC+TGG + tig0024289:65481-65500 Msa1415960:CDS 70.0%
AGGAGGGGAGGGGAAGGGAG+GGG + tig0024289:65789-65808 Msa1415960:intron 70.0%
AGGAGGGGGAAGGGAGGGGA+GGG - tig0024289:66642-66661 None:intergenic 70.0%
TAGGAGGGGGAAGGGAGGGG+AGG - tig0024289:66643-66662 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0024289 gene 61049 68686 61049 ID=Msa1415960;Name=Msa1415960
tig0024289 mRNA 61049 68686 61049 ID=Msa1415960-mRNA-1;Parent=Msa1415960;Name=Msa1415960-mRNA-1;_AED=0.09;_eAED=0.09;_QI=580|1|1|1|1|1|13|498|448
tig0024289 exon 61049 61704 61049 ID=Msa1415960-mRNA-1:exon:22648;Parent=Msa1415960-mRNA-1
tig0024289 exon 61811 61851 61811 ID=Msa1415960-mRNA-1:exon:22649;Parent=Msa1415960-mRNA-1
tig0024289 exon 62339 62557 62339 ID=Msa1415960-mRNA-1:exon:22650;Parent=Msa1415960-mRNA-1
tig0024289 exon 62657 62752 62657 ID=Msa1415960-mRNA-1:exon:22651;Parent=Msa1415960-mRNA-1
tig0024289 exon 64788 64858 64788 ID=Msa1415960-mRNA-1:exon:22652;Parent=Msa1415960-mRNA-1
tig0024289 exon 65147 65208 65147 ID=Msa1415960-mRNA-1:exon:22653;Parent=Msa1415960-mRNA-1
tig0024289 exon 65332 65395 65332 ID=Msa1415960-mRNA-1:exon:22654;Parent=Msa1415960-mRNA-1
tig0024289 exon 65477 65561 65477 ID=Msa1415960-mRNA-1:exon:22655;Parent=Msa1415960-mRNA-1
tig0024289 exon 66792 66918 66792 ID=Msa1415960-mRNA-1:exon:22656;Parent=Msa1415960-mRNA-1
tig0024289 exon 67010 67083 67010 ID=Msa1415960-mRNA-1:exon:22657;Parent=Msa1415960-mRNA-1
tig0024289 exon 67157 67220 67157 ID=Msa1415960-mRNA-1:exon:22658;Parent=Msa1415960-mRNA-1
tig0024289 exon 67410 67531 67410 ID=Msa1415960-mRNA-1:exon:22659;Parent=Msa1415960-mRNA-1
tig0024289 exon 67943 68686 67943 ID=Msa1415960-mRNA-1:exon:22660;Parent=Msa1415960-mRNA-1
tig0024289 five_prime_UTR 61049 61628 61049 ID=Msa1415960-mRNA-1:five_prime_utr;Parent=Msa1415960-mRNA-1
tig0024289 CDS 61629 61704 61629 ID=Msa1415960-mRNA-1:cds;Parent=Msa1415960-mRNA-1
tig0024289 CDS 61811 61851 61811 ID=Msa1415960-mRNA-1:cds;Parent=Msa1415960-mRNA-1
tig0024289 CDS 62339 62557 62339 ID=Msa1415960-mRNA-1:cds;Parent=Msa1415960-mRNA-1
tig0024289 CDS 62657 62752 62657 ID=Msa1415960-mRNA-1:cds;Parent=Msa1415960-mRNA-1
tig0024289 CDS 64788 64858 64788 ID=Msa1415960-mRNA-1:cds;Parent=Msa1415960-mRNA-1
tig0024289 CDS 65147 65208 65147 ID=Msa1415960-mRNA-1:cds;Parent=Msa1415960-mRNA-1
tig0024289 CDS 65332 65395 65332 ID=Msa1415960-mRNA-1:cds;Parent=Msa1415960-mRNA-1
tig0024289 CDS 65477 65561 65477 ID=Msa1415960-mRNA-1:cds;Parent=Msa1415960-mRNA-1
tig0024289 CDS 66792 66918 66792 ID=Msa1415960-mRNA-1:cds;Parent=Msa1415960-mRNA-1
tig0024289 CDS 67010 67083 67010 ID=Msa1415960-mRNA-1:cds;Parent=Msa1415960-mRNA-1
tig0024289 CDS 67157 67220 67157 ID=Msa1415960-mRNA-1:cds;Parent=Msa1415960-mRNA-1
tig0024289 CDS 67410 67531 67410 ID=Msa1415960-mRNA-1:cds;Parent=Msa1415960-mRNA-1
tig0024289 CDS 67943 68188 67943 ID=Msa1415960-mRNA-1:cds;Parent=Msa1415960-mRNA-1
tig0024289 three_prime_UTR 68189 68686 68189 ID=Msa1415960-mRNA-1:three_prime_utr;Parent=Msa1415960-mRNA-1
Gene Sequence

>Msa1415960

ATGGATCATGTGATTGGTGGAAAGTTTAAACTTGGAAGGAAAATTGGGAGTGGTTCTTTTGGAGAGCTCTATTTAGCTGTTAATATACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAATCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAACTGTATATGATTCTTCAAGGAGGAACTGGAATCCCCCACCTCAAATGGTTTGGAGTTGAGGGAGAGTACAATGTCATGGTCATCGACCTTCTTGGACCCAGTCTGGAAGATTTATTCAATTATTGTAACCGGAAATTCACTTTGAAGTCGGTGTTGATGCTTGCCGATCAATTAATTAACAGAGTTGAATACATGCATTCAAGAGGCTTTCTTCACCGAGACATAAAGCCAGACAATTTTCTGATGGGCCTCGGACGTAAAGCAAATCAAGTGTATGCCATTGACTTCGGCCTTGCGAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCGTACAGGGAAAATAAGAACCTTACAGGCACGGCACGCTATGCAAGTGTCAACACCCATCTTGGAATCGAACAAAGTCGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTAATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAAGGACTGAGGGCTGGAAACAAAAAGCAAAAATACGATAAAATCAGTGAGACGAAGGTATCAACTCCAATAGAGGTGCTCTGTAAATCATATCCCTCTGAGTTTGTATCATACTTCCACTATTGCCGTTCGTTGAGGTTTGAGGACAAACCAGATTATTCATATTTAAAGAGACTTTTCCGAGACCTTTTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTGTATTGAAGTATCCACAGAGTAGTGGCAGCTCTAGAGGACGGCATGGCACTGGCAAGGCAGCTATGCATGCAGCTACACCAGTACATAAAGCACAAAAGATTCCAGTTGGGAGAGAGATTCGGGAGAAATTATCTGGTGCTGTTGTTGAAGCATTCACCCAGAGGAACCGCGCAAATTCTAGCCCTCATCACGGTGAACACACCAGACATAGGACTTATGATGATGTGCACTATGCCCAACACAATTCAACTCGATATGGAAGCAGTTCAAGAAGAGCCATGGTATCATCAAAGCCAAATTCCTCAGGTGACCATTCTGGCAGGATGGCCACAAGTGGGGGCCGTCCATCTGGCGCACATAGAGTTCAACCTGTGTATGATACGAAACAAGCAACTTTTGCTCGCAATGGGTCTATGAGAGGCCACCGTGATGATCCTCTGAGGAGCTTTGAGCTCCTCACTATCAGGAAGTAA
Protein sequence

>Msa1415960

MDHVIGGKFKLGRKIGSGSFGELYLAVNIQTGEEVAVKLESVKTRHPQLHYESKLYMILQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKFTLKSVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDFGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLRAGNKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQSSGSSRGRHGTGKAAMHAATPVHKAQKIPVGREIREKLSGAVVEAFTQRNRANSSPHHGEHTRHRTYDDVHYAQHNSTRYGSSSRRAMVSSKPNSSGDHSGRMATSGGRPSGAHRVQPVYDTKQATFARNGSMRGHRDDPLRSFELLTIRK*