Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165230 | sp|Q8LPJ1|CKL6_ARATH | 72.594 | 478 | 98 | 11 | 1 | 448 | 5 | 479 | 0.0 | 679 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165230 | A0A072VLK3 | 97.577 | 454 | 5 | 1 | 1 | 448 | 1 | 454 | 0.0 | 919 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092050 | Msa0165230 | 0.927523 | 1.043415e-91 | -8.615850e-47 |
| Msa0092140 | Msa0165230 | 0.947842 | 3.055567e-106 | -8.615850e-47 |
| Msa0122800 | Msa0165230 | 0.925970 | 8.895375e-91 | -8.615850e-47 |
| Msa0165230 | Msa0165290 | 0.945148 | 5.244460e-104 | -8.615850e-47 |
| Msa0165230 | Msa1415960 | 0.958104 | 5.363096e-116 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165230 | MtrunA17_Chr1g0183631 | 97.577 | 454 | 5 | 1 | 1 | 448 | 1 | 454 | 0.0 | 919 |
| Msa0165230 | MtrunA17_Chr7g0261501 | 78.065 | 465 | 83 | 7 | 1 | 448 | 1 | 463 | 0.0 | 726 |
| Msa0165230 | MtrunA17_Chr1g0187571 | 71.304 | 460 | 115 | 6 | 1 | 446 | 2 | 458 | 0.0 | 641 |
| Msa0165230 | MtrunA17_Chr1g0166821 | 71.145 | 454 | 120 | 5 | 1 | 446 | 2 | 452 | 0.0 | 632 |
| Msa0165230 | MtrunA17_Chr2g0329981 | 65.358 | 433 | 114 | 8 | 1 | 425 | 1 | 405 | 0.0 | 551 |
| Msa0165230 | MtrunA17_Chr4g0071031 | 72.222 | 360 | 87 | 4 | 1 | 347 | 1 | 360 | 0.0 | 545 |
| Msa0165230 | MtrunA17_Chr8g0342821 | 59.958 | 472 | 154 | 10 | 1 | 444 | 1 | 465 | 0.0 | 540 |
| Msa0165230 | MtrunA17_Chr2g0299661 | 55.274 | 474 | 176 | 6 | 1 | 447 | 1 | 465 | 0.0 | 516 |
| Msa0165230 | MtrunA17_Chr6g0486611 | 76.797 | 306 | 71 | 0 | 1 | 306 | 1 | 306 | 2.51e-179 | 508 |
| Msa0165230 | MtrunA17_Chr1g0167261 | 66.935 | 372 | 90 | 4 | 1 | 370 | 2 | 342 | 6.97e-178 | 501 |
| Msa0165230 | MtrunA17_Chr8g0390211 | 77.181 | 298 | 68 | 0 | 1 | 298 | 1 | 298 | 3.13e-177 | 502 |
| Msa0165230 | MtrunA17_Chr3g0140071 | 55.582 | 421 | 171 | 4 | 1 | 417 | 1 | 409 | 3.06e-164 | 469 |
| Msa0165230 | MtrunA17_Chr1g0146151 | 70.508 | 295 | 87 | 0 | 1 | 295 | 1 | 295 | 1.34e-162 | 465 |
| Msa0165230 | MtrunA17_Chr7g0214531 | 37.716 | 289 | 161 | 6 | 5 | 277 | 31 | 316 | 9.44e-58 | 200 |
| Msa0165230 | MtrunA17_Chr3g0140431 | 37.276 | 279 | 162 | 6 | 5 | 273 | 32 | 307 | 6.90e-55 | 192 |
| Msa0165230 | MtrunA17_Chr1g0146301 | 36.918 | 279 | 163 | 6 | 5 | 273 | 118 | 393 | 3.86e-54 | 191 |
| Msa0165230 | MtrunA17_Chr1g0213321 | 36.268 | 284 | 167 | 6 | 5 | 277 | 113 | 393 | 1.13e-53 | 190 |
| Msa0165230 | MtrunA17_Chr7g0253211 | 36.525 | 282 | 163 | 5 | 9 | 277 | 324 | 602 | 6.49e-53 | 190 |
| Msa0165230 | MtrunA17_Chr8g0340491 | 36.170 | 282 | 158 | 7 | 9 | 273 | 128 | 404 | 9.78e-50 | 179 |
| Msa0165230 | MtrunA17_Chr5g0405421 | 26.818 | 220 | 144 | 6 | 8 | 219 | 98 | 308 | 3.11e-14 | 74.7 |
| Msa0165230 | MtrunA17_Chr7g0267751 | 29.167 | 216 | 131 | 9 | 9 | 215 | 135 | 337 | 9.08e-14 | 73.6 |
| Msa0165230 | MtrunA17_Chr4g0072831 | 32.680 | 153 | 71 | 6 | 7 | 153 | 8 | 134 | 2.91e-13 | 70.5 |
| Msa0165230 | MtrunA17_Chr3g0107051 | 29.817 | 218 | 133 | 9 | 5 | 214 | 17 | 222 | 8.51e-13 | 70.1 |
| Msa0165230 | MtrunA17_Chr7g0245031 | 34.375 | 128 | 70 | 4 | 109 | 236 | 252 | 365 | 1.92e-12 | 68.9 |
| Msa0165230 | MtrunA17_Chr8g0346071 | 30.415 | 217 | 126 | 9 | 7 | 213 | 15 | 216 | 1.01e-11 | 66.6 |
| Msa0165230 | MtrunA17_Chr7g0267771 | 26.522 | 230 | 142 | 8 | 9 | 228 | 88 | 300 | 1.06e-11 | 66.6 |
| Msa0165230 | MtrunA17_Chr5g0444171 | 27.488 | 211 | 137 | 6 | 9 | 213 | 92 | 292 | 2.81e-11 | 65.5 |
| Msa0165230 | MtrunA17_Chr8g0374701 | 27.948 | 229 | 139 | 10 | 6 | 219 | 122 | 339 | 3.10e-11 | 65.5 |
| Msa0165230 | MtrunA17_Chr1g0201571 | 28.302 | 212 | 127 | 9 | 9 | 209 | 126 | 323 | 3.46e-11 | 65.5 |
| Msa0165230 | MtrunA17_Chr1g0157131 | 27.652 | 264 | 158 | 10 | 4 | 251 | 69 | 315 | 5.09e-11 | 64.7 |
| Msa0165230 | MtrunA17_Chr4g0075541 | 25.887 | 282 | 179 | 10 | 11 | 281 | 89 | 351 | 5.17e-11 | 64.3 |
| Msa0165230 | MtrunA17_Chr8g0387671 | 29.437 | 231 | 134 | 11 | 9 | 228 | 66 | 278 | 6.83e-11 | 64.3 |
| Msa0165230 | MtrunA17_Chr3g0107011 | 26.070 | 257 | 137 | 10 | 3 | 236 | 8 | 234 | 8.99e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165230 | AT4G28540.1 | 72.594 | 478 | 98 | 11 | 1 | 448 | 5 | 479 | 0.0 | 679 |
| Msa0165230 | AT4G14340.1 | 70.861 | 453 | 116 | 7 | 1 | 446 | 7 | 450 | 0.0 | 642 |
| Msa0165230 | AT3G23340.1 | 71.938 | 449 | 110 | 7 | 1 | 446 | 1 | 436 | 0.0 | 642 |
| Msa0165230 | AT1G03930.1 | 68.354 | 474 | 121 | 8 | 1 | 448 | 1 | 471 | 0.0 | 626 |
| Msa0165230 | AT5G43320.1 | 67.579 | 475 | 124 | 7 | 1 | 446 | 1 | 474 | 0.0 | 625 |
| Msa0165230 | AT3G23340.2 | 69.265 | 449 | 108 | 8 | 1 | 446 | 1 | 422 | 0.0 | 608 |
| Msa0165230 | AT1G04440.1 | 66.164 | 464 | 137 | 8 | 1 | 446 | 1 | 462 | 0.0 | 599 |
| Msa0165230 | AT5G44100.1 | 82.000 | 350 | 58 | 2 | 1 | 346 | 1 | 349 | 0.0 | 597 |
| Msa0165230 | AT5G44100.2 | 82.000 | 350 | 58 | 2 | 1 | 346 | 1 | 349 | 0.0 | 597 |
| Msa0165230 | AT4G14340.2 | 83.537 | 328 | 53 | 1 | 1 | 328 | 7 | 333 | 0.0 | 576 |
| Msa0165230 | AT5G43320.2 | 81.024 | 332 | 60 | 1 | 1 | 329 | 1 | 332 | 0.0 | 565 |
| Msa0165230 | AT5G43320.3 | 81.024 | 332 | 60 | 1 | 1 | 329 | 1 | 332 | 0.0 | 565 |
| Msa0165230 | AT1G72710.1 | 75.152 | 330 | 79 | 2 | 1 | 328 | 1 | 329 | 0.0 | 536 |
| Msa0165230 | AT4G26100.1 | 80.872 | 298 | 57 | 0 | 1 | 298 | 1 | 298 | 0.0 | 535 |
| Msa0165230 | AT5G57015.1 | 80.537 | 298 | 58 | 0 | 1 | 298 | 1 | 298 | 0.0 | 529 |
| Msa0165230 | AT2G19470.1 | 73.556 | 329 | 84 | 3 | 1 | 326 | 1 | 329 | 0.0 | 524 |
| Msa0165230 | AT4G28880.3 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.65e-176 | 499 |
| Msa0165230 | AT4G28880.2 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.65e-176 | 499 |
| Msa0165230 | AT4G28880.1 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.65e-176 | 499 |
| Msa0165230 | AT4G28880.4 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.65e-176 | 499 |
| Msa0165230 | AT4G28860.2 | 70.533 | 319 | 94 | 0 | 1 | 319 | 1 | 319 | 1.08e-174 | 494 |
| Msa0165230 | AT4G28860.1 | 74.832 | 298 | 75 | 0 | 1 | 298 | 1 | 298 | 2.02e-174 | 495 |
| Msa0165230 | AT4G08800.1 | 66.216 | 296 | 68 | 2 | 1 | 296 | 1 | 264 | 3.73e-145 | 416 |
| Msa0165230 | AT2G25760.2 | 39.286 | 280 | 155 | 4 | 9 | 273 | 107 | 386 | 7.33e-59 | 204 |
| Msa0165230 | AT2G25760.1 | 38.929 | 280 | 153 | 5 | 9 | 273 | 107 | 383 | 3.87e-56 | 197 |
| Msa0165230 | AT3G13670.1 | 35.986 | 289 | 166 | 6 | 5 | 277 | 131 | 416 | 3.68e-53 | 189 |
| Msa0165230 | AT5G18190.2 | 35.461 | 282 | 166 | 5 | 9 | 277 | 130 | 408 | 1.84e-52 | 187 |
| Msa0165230 | AT5G18190.1 | 35.461 | 282 | 166 | 5 | 9 | 277 | 130 | 408 | 1.84e-52 | 187 |
| Msa0165230 | AT3G03940.1 | 35.461 | 282 | 166 | 5 | 9 | 277 | 140 | 418 | 4.67e-52 | 186 |
| Msa0165230 | AT3G50530.1 | 28.319 | 226 | 141 | 7 | 5 | 219 | 144 | 359 | 1.10e-13 | 73.6 |
| Msa0165230 | AT5G21326.1 | 29.870 | 231 | 113 | 10 | 7 | 214 | 11 | 215 | 3.38e-13 | 71.6 |
| Msa0165230 | AT3G20410.2 | 28.384 | 229 | 143 | 8 | 9 | 230 | 91 | 305 | 5.47e-12 | 68.2 |
| Msa0165230 | AT3G20410.1 | 28.384 | 229 | 143 | 8 | 9 | 230 | 91 | 305 | 5.47e-12 | 68.2 |
| Msa0165230 | AT2G17890.1 | 25.909 | 220 | 146 | 7 | 8 | 219 | 107 | 317 | 5.77e-12 | 68.2 |
| Msa0165230 | AT1G30270.1 | 27.386 | 241 | 147 | 10 | 7 | 236 | 29 | 252 | 6.34e-12 | 67.8 |
| Msa0165230 | AT1G30270.2 | 27.386 | 241 | 147 | 10 | 7 | 236 | 29 | 252 | 6.50e-12 | 67.8 |
| Msa0165230 | AT2G38910.1 | 28.063 | 253 | 144 | 10 | 1 | 230 | 119 | 356 | 1.07e-11 | 67.4 |
| Msa0165230 | AT3G50530.2 | 26.104 | 249 | 148 | 9 | 5 | 219 | 144 | 390 | 1.42e-11 | 67.0 |
| Msa0165230 | AT4G36070.2 | 25.000 | 220 | 148 | 6 | 8 | 219 | 70 | 280 | 1.47e-11 | 67.0 |
| Msa0165230 | AT4G36070.1 | 25.000 | 220 | 148 | 6 | 8 | 219 | 70 | 280 | 1.80e-11 | 66.6 |
| Msa0165230 | AT3G61960.2 | 24.843 | 318 | 204 | 10 | 7 | 318 | 8 | 296 | 1.89e-11 | 66.6 |
| Msa0165230 | AT3G61960.1 | 24.843 | 318 | 204 | 10 | 7 | 318 | 8 | 296 | 2.02e-11 | 66.6 |
| Msa0165230 | AT4G31170.7 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0165230 | AT4G31170.6 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0165230 | AT4G31170.5 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0165230 | AT4G31170.1 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0165230 | AT4G31170.2 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0165230 | AT4G31170.3 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0165230 | AT4G31170.8 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0165230 | AT1G29230.1 | 27.397 | 219 | 141 | 9 | 2 | 213 | 67 | 274 | 2.91e-11 | 65.9 |
| Msa0165230 | AT1G01140.1 | 28.689 | 244 | 140 | 13 | 7 | 236 | 17 | 240 | 3.12e-11 | 65.5 |
| Msa0165230 | AT1G01140.3 | 28.689 | 244 | 140 | 13 | 7 | 236 | 17 | 240 | 3.32e-11 | 65.5 |
| Msa0165230 | AT1G50700.3 | 25.597 | 293 | 192 | 10 | 9 | 293 | 73 | 347 | 4.36e-11 | 65.1 |
| Msa0165230 | AT1G76040.3 | 27.586 | 232 | 147 | 8 | 9 | 233 | 112 | 329 | 4.65e-11 | 65.1 |
| Msa0165230 | AT1G76040.2 | 28.037 | 214 | 136 | 7 | 9 | 215 | 112 | 314 | 4.68e-11 | 65.5 |
| Msa0165230 | AT4G23650.1 | 29.167 | 216 | 131 | 7 | 9 | 215 | 78 | 280 | 6.36e-11 | 64.7 |
| Msa0165230 | AT1G50700.1 | 25.597 | 293 | 192 | 10 | 9 | 293 | 73 | 347 | 6.56e-11 | 64.7 |
| Msa0165230 | AT4G04720.2 | 23.052 | 308 | 201 | 9 | 2 | 293 | 66 | 353 | 8.09e-11 | 64.3 |
| Msa0165230 | AT4G04720.1 | 23.052 | 308 | 201 | 9 | 2 | 293 | 66 | 353 | 8.09e-11 | 64.3 |
| Msa0165230 | AT1G50700.2 | 25.357 | 280 | 184 | 9 | 9 | 281 | 73 | 334 | 8.96e-11 | 64.3 |
Find 172 sgRNAs with CRISPR-Local
Find 495 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTTCATTTCTAAATTT+TGG | 0.111875 | 1_4:+45664727 | Msa0165230:three_prime_UTR |
| TTTAAACTTGGAAGGAAAAT+TGG | 0.141980 | 1_4:+45658157 | Msa0165230:CDS |
| GTTCTTGATATTGATTATTC+TGG | 0.171244 | 1_4:+45657801 | Msa0165230:five_prime_UTR |
| AATCAAGATTAAATGCAAAT+TGG | 0.204360 | 1_4:-45657938 | None:intergenic |
| TAGAATTTGCGCGGTTCCTC+TGG | 0.208716 | 1_4:-45663978 | None:intergenic |
| CAAAAGTAGTTTCACAAGTT+TGG | 0.231854 | 1_4:-45657662 | None:intergenic |
| GAATGGTCACCTGAGGAATT+TGG | 0.252408 | 1_4:-45664528 | None:intergenic |
| TTGTTGGGTTTGGTGAATTT+TGG | 0.279061 | 1_4:+45657977 | Msa0165230:five_prime_UTR |
| CCGACTTCAAAGTGAATTTC+CGG | 0.284081 | 1_4:-45659023 | None:intergenic |
| TGGGATTTCAAGAAGCCTTA+TGG | 0.303360 | 1_4:+45664756 | Msa0165230:three_prime_UTR |
| ATCAAGATTAAATGCAAATT+GGG | 0.306208 | 1_4:-45657937 | None:intergenic |
| ACATACCTTCTCGAATAAAA+AGG | 0.309439 | 1_4:-45663418 | None:intergenic |
| CTCTTTAAATATGAATAATC+TGG | 0.309704 | 1_4:-45663383 | None:intergenic |
| CAAGTCATAATTACCTCTAT+TGG | 0.319914 | 1_4:-45662063 | None:intergenic |
| AAAATTGGGAGTGGTTCTTT+TGG | 0.322856 | 1_4:+45658172 | Msa0165230:CDS |
| ATTTAAAGCAACGAATGATA+TGG | 0.325797 | 1_4:+45665094 | Msa0165230:three_prime_UTR |
| TTCAGTTGGGAGAGAGATTC+GGG | 0.329420 | 1_4:+45663921 | Msa0165230:intron |
| TATTCTGGGATGATTGGTTT+TGG | 0.336900 | 1_4:+45657816 | Msa0165230:five_prime_UTR |
| CTGTTGAAAATCAATCAATT+TGG | 0.339043 | 1_4:+45658038 | Msa0165230:five_prime_UTR |
| AAACAAAAGATTCAAGTTCA+TGG | 0.356941 | 1_4:+45664783 | Msa0165230:three_prime_UTR |
| CAACACAATTCAACTCGATA+TGG | 0.357353 | 1_4:+45664471 | Msa0165230:CDS |
| CATAGCGTGCCGTGCCTGTA+AGG | 0.359631 | 1_4:-45661669 | None:intergenic |
| AATTCCTCAGGTGACCATTC+TGG | 0.359748 | 1_4:+45664531 | Msa0165230:CDS |
| ATTTATTCAATTATTGTAAC+CGG | 0.360177 | 1_4:+45659004 | Msa0165230:CDS |
| GTGCTAATGTATTTCTTAAG+AGG | 0.362458 | 1_4:+45661880 | Msa0165230:CDS |
| TTAAACTTGGAAGGAAAATT+GGG | 0.363410 | 1_4:+45658158 | Msa0165230:CDS |
| TCCAGCCCTCAGTCCTTGCC+AGG | 0.368539 | 1_4:-45661992 | None:intergenic |
| TTCTTGATATTGATTATTCT+GGG | 0.370586 | 1_4:+45657802 | Msa0165230:five_prime_UTR |
| AGGGAAAATAAGAACCTTAC+AGG | 0.372840 | 1_4:+45661655 | Msa0165230:intron |
| TTTCAGTTGGGAGAGAGATT+CGG | 0.379707 | 1_4:+45663920 | Msa0165230:intron |
| ATTGATTATTCTGGGATGAT+TGG | 0.385224 | 1_4:+45657810 | Msa0165230:five_prime_UTR |
| GTCATGGTCATCGACCTTCT+TGG | 0.387600 | 1_4:+45658967 | Msa0165230:CDS |
| CGACCTTCTTGGACCCAGTC+TGG | 0.390528 | 1_4:+45658978 | Msa0165230:CDS |
| TTTGAATTTGTCCACAATCA+AGG | 0.390569 | 1_4:+45658079 | Msa0165230:five_prime_UTR |
| TTTGGGTGAAGGAATGTAGT+TGG | 0.399411 | 1_4:+45657843 | Msa0165230:five_prime_UTR |
| ATGATTCTTCAAGGAGGAAC+TGG | 0.404829 | 1_4:+45658901 | Msa0165230:CDS |
| ACCTCAACGAACGGCAATAG+TGG | 0.405356 | 1_4:-45663349 | None:intergenic |
| CCTCAACTCCAAACCATTTG+AGG | 0.409202 | 1_4:-45658933 | None:intergenic |
| CGGAGGAAGTGGGTCTTGTT+TGG | 0.413082 | 1_4:-45657632 | None:intergenic |
| GCTTTGAGCTCCTCACTATC+AGG | 0.414666 | 1_4:+45664679 | Msa0165230:CDS |
| GAGATTCGGGAGAAATTATC+TGG | 0.415618 | 1_4:+45663934 | Msa0165230:CDS |
| CTCAAATGGTTTGGAGTTGA+GGG | 0.423483 | 1_4:+45658934 | Msa0165230:CDS |
| TCAGCTGTTAATATACAAAC+TGG | 0.426788 | 1_4:+45658311 | Msa0165230:intron |
| GCAAGTGTCAACACCCATCT+TGG | 0.433561 | 1_4:+45661691 | Msa0165230:CDS |
| ATAGGGATCTTCAGACTCAT+AGG | 0.434481 | 1_4:+45661333 | Msa0165230:CDS |
| TTTATCATGGATCATGTGAT+TGG | 0.443086 | 1_4:+45658127 | Msa0165230:exon |
| CCTCAAATGGTTTGGAGTTG+AGG | 0.448526 | 1_4:+45658933 | Msa0165230:CDS |
| TTGCCGTTCGTTGAGGTTTG+AGG | 0.451388 | 1_4:+45663355 | Msa0165230:CDS |
| TGGATATGCAATGTTATTTG+TGG | 0.454735 | 1_4:+45665001 | Msa0165230:three_prime_UTR |
| ATATCGAGTTGAATTGTGTT+GGG | 0.458129 | 1_4:-45664469 | None:intergenic |
| ACAAAGTCGAAGGGATGATC+TGG | 0.458546 | 1_4:+45661843 | Msa0165230:CDS |
| TTTCGCAAGGCCGAAGTCAA+TGG | 0.458863 | 1_4:-45661306 | None:intergenic |
| ATTGAATAAATCTTCCAGAC+TGG | 0.465309 | 1_4:-45658992 | None:intergenic |
| CATAAAGCACAAAAGATTCC+AGG | 0.469567 | 1_4:+45663715 | Msa0165230:CDS |
| AAACTGTATATGATTCTTCA+AGG | 0.471640 | 1_4:+45658892 | Msa0165230:CDS |
| GTGGAAAGTTTAAACTTGGA+AGG | 0.472881 | 1_4:+45658149 | Msa0165230:CDS |
| CTCCAAACCATTTGAGGTGG+GGG | 0.473526 | 1_4:-45658927 | None:intergenic |
| TTGGAGATGAACGGAGGAAG+TGG | 0.485546 | 1_4:-45657643 | None:intergenic |
| GGCAGGATGGCCACAAGTGG+GGG | 0.486821 | 1_4:+45664552 | Msa0165230:CDS |
| ATAGTGAAGCTGTGGATGCC+TGG | 0.493685 | 1_4:-45658863 | None:intergenic |
| TTGAATTTGTCCACAATCAA+GGG | 0.497388 | 1_4:+45658080 | Msa0165230:five_prime_UTR |
| TCTTCCCTGGCAAGGACTGA+GGG | 0.499281 | 1_4:+45661987 | Msa0165230:CDS |
| AGAAGGTATCTGTGGTGTGC+TGG | 0.499832 | 1_4:-45657701 | None:intergenic |
| TTGTGGCCATCCTGCCAGAA+TGG | 0.501550 | 1_4:-45664545 | None:intergenic |
| CCCTGGCAAGGACTGAGGGC+TGG | 0.502421 | 1_4:+45661991 | Msa0165230:CDS |
| GTCAACACCCATCTTGGAAT+CGG | 0.505171 | 1_4:+45661697 | Msa0165230:CDS |
| ATCATCATAAGTCCTATGTC+TGG | 0.505727 | 1_4:-45664022 | None:intergenic |
| CATATCGAGTTGAATTGTGT+TGG | 0.505789 | 1_4:-45664470 | None:intergenic |
| ATTGGTGGAAAGTTTAAACT+TGG | 0.508093 | 1_4:+45658145 | Msa0165230:CDS |
| TTGAATTCAGCCCTTGATTG+TGG | 0.510798 | 1_4:-45658090 | None:intergenic |
| AGAGGAGGTGGCTGTTAAGC+TGG | 0.511655 | 1_4:+45658334 | Msa0165230:CDS |
| CAGGTGTATGCCATTGACTT+CGG | 0.512497 | 1_4:+45661296 | Msa0165230:intron |
| AGAATTTGCGCGGTTCCTCT+GGG | 0.513807 | 1_4:-45663977 | None:intergenic |
| CTGGCAGGATGGCCACAAGT+GGG | 0.513957 | 1_4:+45664550 | Msa0165230:CDS |
| AGGGATGATCTGGAATCTCT+TGG | 0.515030 | 1_4:+45661853 | Msa0165230:CDS |
| GAAGGTATCAACTCCAATAG+AGG | 0.515426 | 1_4:+45662050 | Msa0165230:CDS |
| GTCTTCCCTGGCAAGGACTG+AGG | 0.516641 | 1_4:+45661986 | Msa0165230:intron |
| TCAATATCAAGAACAACAAA+GGG | 0.519549 | 1_4:-45657792 | None:intergenic |
| ATCAATATCAAGAACAACAA+AGG | 0.520586 | 1_4:-45657793 | None:intergenic |
| AATTGTCTGGCTTTATGTCT+CGG | 0.521040 | 1_4:-45659209 | None:intergenic |
| ATCACTTACCGATTCCAAGA+TGG | 0.522339 | 1_4:-45661705 | None:intergenic |
| TCCACTATTGCCGTTCGTTG+AGG | 0.522705 | 1_4:+45663348 | Msa0165230:CDS |
| CAGAGTAGTGGCAGCTCTAG+AGG | 0.523385 | 1_4:+45663573 | Msa0165230:CDS |
| TCACTTACCGATTCCAAGAT+GGG | 0.528445 | 1_4:-45661704 | None:intergenic |
| GGGCTGAATTCAATATTTGA+AGG | 0.528537 | 1_4:+45658100 | Msa0165230:five_prime_UTR |
| AGGCCCATCAGAAAATTGTC+TGG | 0.529417 | 1_4:-45659222 | None:intergenic |
| AACTCCAAACCATTTGAGGT+GGG | 0.533255 | 1_4:-45658929 | None:intergenic |
| TGGCAGGATGGCCACAAGTG+GGG | 0.534769 | 1_4:+45664551 | Msa0165230:CDS |
| CTCTATGTGCGCCAGATGGA+CGG | 0.535759 | 1_4:-45664575 | None:intergenic |
| CTTGATTTGCTTTACGTCCG+AGG | 0.536022 | 1_4:-45659242 | None:intergenic |
| TTGTAACGACAGCATGGCAC+TGG | 0.538838 | 1_4:+45663661 | Msa0165230:intron |
| TCAAGATTAAATGCAAATTG+GGG | 0.540099 | 1_4:-45657936 | None:intergenic |
| ATCATGGATCATGTGATTGG+TGG | 0.540398 | 1_4:+45658130 | Msa0165230:exon |
| TTGAAACATCCTCATGAATG+AGG | 0.540842 | 1_4:-45657890 | None:intergenic |
| TATACAAACTGGAGAGGAGG+TGG | 0.543406 | 1_4:+45658322 | Msa0165230:CDS |
| AATCTTCTGAAGCAATCTGA+GGG | 0.543803 | 1_4:-45664866 | None:intergenic |
| TTGAATAAATCTTCCAGACT+GGG | 0.547330 | 1_4:-45658991 | None:intergenic |
| TGAATAATTCCTCATTCATG+AGG | 0.551215 | 1_4:+45657881 | Msa0165230:five_prime_UTR |
| TAATGTATTTCTTAAGAGGA+AGG | 0.552033 | 1_4:+45661884 | Msa0165230:CDS |
| TAGTGGCAGCTCTAGAGGAC+GGG | 0.553447 | 1_4:+45663578 | Msa0165230:CDS |
| TCTGGCAGGATGGCCACAAG+TGG | 0.554722 | 1_4:+45664549 | Msa0165230:CDS |
| GTAGTGGCAGCTCTAGAGGA+CGG | 0.557752 | 1_4:+45663577 | Msa0165230:CDS |
| GTTGAATACATGCATTCAAG+AGG | 0.558652 | 1_4:+45659177 | Msa0165230:CDS |
| TCATCAAAGCCAAATTCCTC+AGG | 0.559975 | 1_4:+45664519 | Msa0165230:CDS |
| GAATAAGGTAGGAAAAGAGA+AGG | 0.561006 | 1_4:-45657718 | None:intergenic |
| ATAAGGCTTCTTGAAATCCC+AGG | 0.563366 | 1_4:-45664754 | None:intergenic |
| CAACTCCAAACCATTTGAGG+TGG | 0.572196 | 1_4:-45658930 | None:intergenic |
| TCCAGGAATCTGTGAAGACC+AGG | 0.574379 | 1_4:+45658845 | Msa0165230:intron |
| CCTCAGGTGACCATTCTGGC+AGG | 0.574601 | 1_4:+45664535 | Msa0165230:CDS |
| TTCACAAGTTTGGAGATGAA+CGG | 0.574856 | 1_4:-45657652 | None:intergenic |
| AAATCTTCTGAAGCAATCTG+AGG | 0.574956 | 1_4:-45664867 | None:intergenic |
| TTGCTATGAATATGGTAACT+CGG | 0.576171 | 1_4:-45665135 | None:intergenic |
| AGGTGACCATTCTGGCAGGA+TGG | 0.577708 | 1_4:+45664539 | Msa0165230:CDS |
| ACTATCAGGAAGTAATCTCA+AGG | 0.579172 | 1_4:+45664693 | Msa0165230:exon |
| TGGTGTGTTCACCGTGATGA+GGG | 0.579905 | 1_4:-45664002 | None:intergenic |
| CTCATAGGCACATACCGTAC+AGG | 0.580718 | 1_4:+45661348 | Msa0165230:CDS |
| AGACAGACTTACTAATTGAT+CGG | 0.581760 | 1_4:-45659058 | None:intergenic |
| CTTGGAAGGAAAATTGGGAG+TGG | 0.582542 | 1_4:+45658163 | Msa0165230:CDS |
| GGGGATCTAGAAATGATGTC+GGG | 0.584750 | 1_4:-45664846 | None:intergenic |
| CTTCCAGACTGGGTCCAAGA+AGG | 0.585280 | 1_4:-45658981 | None:intergenic |
| GATCACAAAACCAACCTGTA+CGG | 0.586380 | 1_4:-45661362 | None:intergenic |
| GGACAAATTCAAACAGAGGA+AGG | 0.587793 | 1_4:-45658069 | None:intergenic |
| GAGATTACTTCCTGATAGTG+AGG | 0.590566 | 1_4:-45664689 | None:intergenic |
| CCAGCCCTCAGTCCTTGCCA+GGG | 0.593406 | 1_4:-45661991 | None:intergenic |
| ACTCCAAACCATTTGAGGTG+GGG | 0.595250 | 1_4:-45658928 | None:intergenic |
| TGAACTCTATGTGCGCCAGA+TGG | 0.596034 | 1_4:-45664579 | None:intergenic |
| ATTTGGCTTTGATGATACCA+TGG | 0.597247 | 1_4:-45664511 | None:intergenic |
| TGGTGGCAGAACAAAGTCGA+AGG | 0.597531 | 1_4:+45661833 | Msa0165230:intron |
| GCTTGTTTCGTATCATACAC+AGG | 0.597643 | 1_4:-45664603 | None:intergenic |
| ACGGTGAACACACCAGACAT+AGG | 0.599179 | 1_4:+45664010 | Msa0165230:CDS |
| GCTCGCAATGGGTCTATGAG+AGG | 0.601655 | 1_4:+45664633 | Msa0165230:CDS |
| AGGGGATCTAGAAATGATGT+CGG | 0.602938 | 1_4:-45664847 | None:intergenic |
| CCGGAAATTCACTTTGAAGT+CGG | 0.603149 | 1_4:+45659023 | Msa0165230:CDS |
| CTGGTGTGTTCACCGTGATG+AGG | 0.605762 | 1_4:-45664003 | None:intergenic |
| AAATAATAATAATTCAGCAA+TGG | 0.606102 | 1_4:-45665181 | None:intergenic |
| AACGAATGATATGGTGCTGT+AGG | 0.611429 | 1_4:+45665103 | Msa0165230:three_prime_UTR |
| AGGAGCTCAAAGCTCCTCAG+AGG | 0.611695 | 1_4:-45664669 | None:intergenic |
| AGGAAAAGAGAAGGTATCTG+TGG | 0.614878 | 1_4:-45657709 | None:intergenic |
| ACATAGGACTTATGATGATG+TGG | 0.615199 | 1_4:+45664026 | Msa0165230:CDS |
| ACGACAGCATGGCACTGGCA+AGG | 0.615258 | 1_4:+45663666 | Msa0165230:intron |
| ATATTAATGAATTACCATTG+AGG | 0.618281 | 1_4:+45664806 | Msa0165230:three_prime_UTR |
| TTGAAGTATCCACAGAGTAG+TGG | 0.619683 | 1_4:+45663561 | Msa0165230:CDS |
| TTTGACTCATAGTGAAGCTG+TGG | 0.620621 | 1_4:-45658871 | None:intergenic |
| CGATAAAATCAGTGAGACGA+AGG | 0.621170 | 1_4:+45662032 | Msa0165230:CDS |
| TGTCCTCAAACCTCAACGAA+CGG | 0.628598 | 1_4:-45663358 | None:intergenic |
| CTATCAGGAAGTAATCTCAA+GGG | 0.630386 | 1_4:+45664694 | Msa0165230:exon |
| TGGAGATGAACGGAGGAAGT+GGG | 0.631012 | 1_4:-45657642 | None:intergenic |
| TCATGCCATTGTGACCTCAA+TGG | 0.631482 | 1_4:-45664820 | None:intergenic |
| TGAGGGAGAGTACAATGTCA+TGG | 0.631924 | 1_4:+45658951 | Msa0165230:CDS |
| AAATAAGAACCTTACAGGCA+CGG | 0.632067 | 1_4:+45661660 | Msa0165230:CDS |
| GATGAGGGCTAGAATTTGCG+CGG | 0.634849 | 1_4:-45663987 | None:intergenic |
| TAATATACAAACTGGAGAGG+AGG | 0.635465 | 1_4:+45658319 | Msa0165230:CDS |
| TGTGGTGTGCTGGATGAAAG+AGG | 0.645151 | 1_4:-45657691 | None:intergenic |
| AAGCAGTTCAAGAAGAGCCA+TGG | 0.646616 | 1_4:+45664494 | Msa0165230:CDS |
| ACAGTGAATGTAGTTTAACA+AGG | 0.650280 | 1_4:+45665044 | Msa0165230:three_prime_UTR |
| CTAGAGCTGCCACTACTCTG+TGG | 0.650464 | 1_4:-45663570 | None:intergenic |
| TTGTGGACAAATTCAAACAG+AGG | 0.650537 | 1_4:-45658073 | None:intergenic |
| AAGTATGATACAAACTCAGA+GGG | 0.655305 | 1_4:-45663326 | None:intergenic |
| TGTTAATATACAAACTGGAG+AGG | 0.660638 | 1_4:+45658316 | Msa0165230:CDS |
| GAAGTATGATACAAACTCAG+AGG | 0.660966 | 1_4:-45663327 | None:intergenic |
| GGTGGCAGAACAAAGTCGAA+GGG | 0.669079 | 1_4:+45661834 | Msa0165230:intron |
| TTGTTGAAGCATTCACCCAG+AGG | 0.669158 | 1_4:+45663962 | Msa0165230:CDS |
| CAAGATTAAATGCAAATTGG+GGG | 0.673478 | 1_4:-45657935 | None:intergenic |
| AATTACCATTGAGGTCACAA+TGG | 0.674062 | 1_4:+45664815 | Msa0165230:three_prime_UTR |
| CCTGCCAGAATGGTCACCTG+AGG | 0.679602 | 1_4:-45664535 | None:intergenic |
| GCAAATTCTAGCCCTCATCA+CGG | 0.684087 | 1_4:+45663991 | Msa0165230:CDS |
| ACAAGTTTGGAGATGAACGG+AGG | 0.694451 | 1_4:-45657649 | None:intergenic |
| AGCTCCTCAGAGGATCATCA+CGG | 0.696325 | 1_4:-45664659 | None:intergenic |
| ATCTTCTGAAGCAATCTGAG+GGG | 0.701243 | 1_4:-45664865 | None:intergenic |
| GCCACCGTGATGATCCTCTG+AGG | 0.725239 | 1_4:+45664655 | Msa0165230:CDS |
| CTGTATATGATTCTTCAAGG+AGG | 0.728537 | 1_4:+45658895 | Msa0165230:CDS |
| TCCTCAGAGGATCATCACGG+TGG | 0.751052 | 1_4:-45664656 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTAAAAACAAAAAAAA+AGG | - | chr1_4:45658229-45658248 | None:intergenic | 10.0% |
| !!! | TTGTTTTTAATTCATTTATT+TGG | + | chr1_4:45658235-45658254 | Msa0165230:intron | 10.0% |
| !!! | TGTTTTTAATTCATTTATTT+GGG | + | chr1_4:45658236-45658255 | Msa0165230:intron | 10.0% |
| !! | TAATCATATATAGATAATTT+AGG | - | chr1_4:45659379-45659398 | None:intergenic | 10.0% |
| !! | ATTAAATATAAGAAAATCTT+GGG | + | chr1_4:45659637-45659656 | Msa0165230:intron | 10.0% |
| !! | CCATAAAATAAAATAAAAAA+TGG | - | chr1_4:45661151-45661170 | None:intergenic | 10.0% |
| !!! | CCATTTTTTATTTTATTTTA+TGG | + | chr1_4:45661148-45661167 | Msa0165230:intron | 10.0% |
| !! | AAATGAATTATTACATTATT+AGG | + | chr1_4:45661774-45661793 | Msa0165230:intron | 10.0% |
| !!! | TACTTTTCATTTTTAAATTA+CGG | + | chr1_4:45662324-45662343 | Msa0165230:intron | 10.0% |
| !!! | TTTATGAAAATAACATTTTA+GGG | - | chr1_4:45663201-45663220 | None:intergenic | 10.0% |
| !!! | TTTTATGAAAATAACATTTT+AGG | - | chr1_4:45663202-45663221 | None:intergenic | 10.0% |
| !!! | TTTTAGATTTGTAAATAAAA+CGG | - | chr1_4:45664261-45664280 | None:intergenic | 10.0% |
| !!! | TTTTATGAATTTCTAGAATT+TGG | + | chr1_4:45658412-45658431 | Msa0165230:intron | 15.0% |
| !!! | TTGATTTTTTTTTTTCATGT+TGG | + | chr1_4:45658435-45658454 | Msa0165230:intron | 15.0% |
| !!! | ATGTTTTAAATGTTAACTTT+TGG | + | chr1_4:45658564-45658583 | Msa0165230:intron | 15.0% |
| !! | ATTTATTCAATTATTGTAAC+CGG | + | chr1_4:45659004-45659023 | Msa0165230:CDS | 15.0% |
| !! | TAATATGGTTCTTTATATAA+TGG | + | chr1_4:45659102-45659121 | Msa0165230:intron | 15.0% |
| !! | AAAACATAATAGCTTAAAAT+GGG | - | chr1_4:45659463-45659482 | None:intergenic | 15.0% |
| !! | AAAAACATAATAGCTTAAAA+TGG | - | chr1_4:45659464-45659483 | None:intergenic | 15.0% |
| !! | GATTAAATATAAGAAAATCT+TGG | + | chr1_4:45659636-45659655 | Msa0165230:intron | 15.0% |
| !! | TATTATATTGATATTGATAG+CGG | + | chr1_4:45660226-45660245 | Msa0165230:intron | 15.0% |
| !!! | ATCATAGTAATATTTACTTT+TGG | + | chr1_4:45660682-45660701 | Msa0165230:intron | 15.0% |
| !!! | TCATAGTAATATTTACTTTT+GGG | + | chr1_4:45660683-45660702 | Msa0165230:intron | 15.0% |
| !!! | TTTTATTTTATGGATGTTAT+AGG | + | chr1_4:45661158-45661177 | Msa0165230:intron | 15.0% |
| !! | CTAAAATATTATCTACATTT+AGG | - | chr1_4:45661545-45661564 | None:intergenic | 15.0% |
| !!! | ATATTTTTCACTAATCAATT+TGG | - | chr1_4:45662674-45662693 | None:intergenic | 15.0% |
| !! | AAAATGACTAATAAAAACTA+AGG | + | chr1_4:45662737-45662756 | Msa0165230:intron | 15.0% |
| !! | GATTATGTAATGTTATATTA+TGG | - | chr1_4:45662829-45662848 | None:intergenic | 15.0% |
| !! | ATCATCATACATTAATTATT+AGG | + | chr1_4:45662846-45662865 | Msa0165230:intron | 15.0% |
| !!! | TACTTTTCTTTTTCAAATTA+CGG | - | chr1_4:45663133-45663152 | None:intergenic | 15.0% |
| !!! | ATTTTTAATTGCTATGAATA+TGG | - | chr1_4:45665146-45665165 | None:intergenic | 15.0% |
| !! | AAATAATAATAATTCAGCAA+TGG | - | chr1_4:45665184-45665203 | None:intergenic | 15.0% |
| !!! | TTTTTTGGAAAAACAGAATA+AGG | - | chr1_4:45657736-45657755 | None:intergenic | 20.0% |
| !!! | TTCTTGATATTGATTATTCT+GGG | + | chr1_4:45657802-45657821 | Msa0165230:five_prime_UTR | 20.0% |
| !! | ATCAAGATTAAATGCAAATT+GGG | - | chr1_4:45657940-45657959 | None:intergenic | 20.0% |
| !! | AATCAAGATTAAATGCAAAT+TGG | - | chr1_4:45657941-45657960 | None:intergenic | 20.0% |
| !!! | TTAGATTGTGAATTTTTGTT+GGG | + | chr1_4:45657962-45657981 | Msa0165230:five_prime_UTR | 20.0% |
| !! | GATATTATCTGAACTATTTA+GGG | + | chr1_4:45658476-45658495 | Msa0165230:intron | 20.0% |
| !!! | TTTTTTTTGTTATCAGTTAG+TGG | + | chr1_4:45658756-45658775 | Msa0165230:intron | 20.0% |
| !!! | AAGCTATTATGTTTTTTCTT+TGG | + | chr1_4:45659468-45659487 | Msa0165230:intron | 20.0% |
| !!! | ACAAGATTCTATCATTTTTT+CGG | - | chr1_4:45660055-45660074 | None:intergenic | 20.0% |
| !!! | TCTTTATTTATATCAAAGAC+AGG | - | chr1_4:45660450-45660469 | None:intergenic | 20.0% |
| !!! | TACAAAATGAAGTCTTTTAA+AGG | - | chr1_4:45661029-45661048 | None:intergenic | 20.0% |
| !! | AGCAATTATTAAGCAATATA+AGG | - | chr1_4:45661442-45661461 | None:intergenic | 20.0% |
| !! | AACTAAAACAATATCAAACT+TGG | + | chr1_4:45661573-45661592 | Msa0165230:intron | 20.0% |
| !! | CAAAATATATTGAGATCAAT+GGG | - | chr1_4:45661610-45661629 | None:intergenic | 20.0% |
| !! | ACAAAATATATTGAGATCAA+TGG | - | chr1_4:45661611-45661630 | None:intergenic | 20.0% |
| !!! | ATATTTTTCTTCTTTGCTTA+GGG | + | chr1_4:45661636-45661655 | Msa0165230:intron | 20.0% |
| !!! | GTTTCTTGTTTATTAGAAAT+TGG | + | chr1_4:45662170-45662189 | Msa0165230:intron | 20.0% |
| !!! | ATCCAAATTATTTAAGATGA+TGG | - | chr1_4:45662483-45662502 | None:intergenic | 20.0% |
| !!! | ATTTTGGTCTCTAAAATATA+TGG | + | chr1_4:45662567-45662586 | Msa0165230:intron | 20.0% |
| !!! | TAAAAACTAAGGTTTGTTTT+TGG | + | chr1_4:45662748-45662767 | Msa0165230:intron | 20.0% |
| !!! | TGAAGGTTTTGAATTAAAAT+GGG | - | chr1_4:45662799-45662818 | None:intergenic | 20.0% |
| !!! | TTGAAGGTTTTGAATTAAAA+TGG | - | chr1_4:45662800-45662819 | None:intergenic | 20.0% |
| !! | TATATTATGGAAAAACTTGA+AGG | - | chr1_4:45662816-45662835 | None:intergenic | 20.0% |
| !!! | TTACGTGCTTTTATAAAAAT+AGG | + | chr1_4:45663286-45663305 | Msa0165230:intron | 20.0% |
| !! | CTCTTTAAATATGAATAATC+TGG | - | chr1_4:45663386-45663405 | None:intergenic | 20.0% |
| !!! | TTGTTGTTTTACATTTTTGT+TGG | + | chr1_4:45663622-45663641 | Msa0165230:intron | 20.0% |
| !! | TTATGTGAAAAAACATGAAA+TGG | - | chr1_4:45664151-45664170 | None:intergenic | 20.0% |
| !! | ATATTTACAAATGGTAAACA+AGG | - | chr1_4:45664198-45664217 | None:intergenic | 20.0% |
| !! | CTAGTACAAATATTTACAAA+TGG | - | chr1_4:45664207-45664226 | None:intergenic | 20.0% |
| !!! | TGTTCTTCATTTCTAAATTT+TGG | + | chr1_4:45664727-45664746 | Msa0165230:three_prime_UTR | 20.0% |
| !! | ATATTAATGAATTACCATTG+AGG | + | chr1_4:45664806-45664825 | Msa0165230:three_prime_UTR | 20.0% |
| ! | TCAATATCAAGAACAACAAA+GGG | - | chr1_4:45657795-45657814 | None:intergenic | 25.0% |
| ! | ATCAATATCAAGAACAACAA+AGG | - | chr1_4:45657796-45657815 | None:intergenic | 25.0% |
| !! | GTTCTTGATATTGATTATTC+TGG | + | chr1_4:45657801-45657820 | Msa0165230:five_prime_UTR | 25.0% |
| ! | TCAAGATTAAATGCAAATTG+GGG | - | chr1_4:45657939-45657958 | None:intergenic | 25.0% |
| !! | GTTAGATTGTGAATTTTTGT+TGG | + | chr1_4:45657961-45657980 | Msa0165230:five_prime_UTR | 25.0% |
| !!! | GTTAGGATTTTTATTGATTC+AGG | + | chr1_4:45658006-45658025 | Msa0165230:five_prime_UTR | 25.0% |
| ! | CTGTTGAAAATCAATCAATT+TGG | + | chr1_4:45658038-45658057 | Msa0165230:five_prime_UTR | 25.0% |
| !! | ATTTGAAGGTGATTTTATCA+TGG | + | chr1_4:45658114-45658133 | Msa0165230:exon | 25.0% |
| ! | TTTAAACTTGGAAGGAAAAT+TGG | + | chr1_4:45658157-45658176 | Msa0165230:CDS | 25.0% |
| ! | TTAAACTTGGAAGGAAAATT+GGG | + | chr1_4:45658158-45658177 | Msa0165230:CDS | 25.0% |
| !!! | TTGGTTCTAGATGTATTATT+AGG | + | chr1_4:45658454-45658473 | Msa0165230:intron | 25.0% |
| ! | GGATATTATCTGAACTATTT+AGG | + | chr1_4:45658475-45658494 | Msa0165230:intron | 25.0% |
| ! | ATATCATTTATCGAAGGAAA+TGG | + | chr1_4:45658533-45658552 | Msa0165230:intron | 25.0% |
| !! | AATGTTAACTTTTGGTCAAT+AGG | + | chr1_4:45658572-45658591 | Msa0165230:intron | 25.0% |
| ! | AAACTGTATATGATTCTTCA+AGG | + | chr1_4:45658892-45658911 | Msa0165230:CDS | 25.0% |
| ! | TTGGCGAAAGTTATTTAATA+TGG | + | chr1_4:45659087-45659106 | Msa0165230:intron | 25.0% |
| !! | AAAAAACAAACAAAAGTGTG+AGG | - | chr1_4:45659145-45659164 | None:intergenic | 25.0% |
| ! | TTTAATTCCTTTGTCTATTG+TGG | + | chr1_4:45659307-45659326 | Msa0165230:intron | 25.0% |
| ! | TTAATTCCTTTGTCTATTGT+GGG | + | chr1_4:45659308-45659327 | Msa0165230:intron | 25.0% |
| ! | ACCTAGAAAAGAATTATGAT+AGG | + | chr1_4:45659405-45659424 | Msa0165230:intron | 25.0% |
| ! | CCTAGAAAAGAATTATGATA+GGG | + | chr1_4:45659406-45659425 | Msa0165230:intron | 25.0% |
| !! | TGTCATATATTTTCTTGTGT+GGG | + | chr1_4:45659529-45659548 | Msa0165230:intron | 25.0% |
| ! | AGAGTCTAAATAGGAATAAA+TGG | + | chr1_4:45659570-45659589 | Msa0165230:intron | 25.0% |
| ! | TTCAGTTATTTGTGTTTGAA+AGG | + | chr1_4:45659852-45659871 | Msa0165230:intron | 25.0% |
| !!! | AACATCAACTTTTTTTACCA+GGG | - | chr1_4:45660104-45660123 | None:intergenic | 25.0% |
| !!! | TAACATCAACTTTTTTTACC+AGG | - | chr1_4:45660105-45660124 | None:intergenic | 25.0% |
| ! | ATAACATCAAAATACAAGCT+TGG | + | chr1_4:45660501-45660520 | Msa0165230:intron | 25.0% |
| !!! | AACTTAGGATTTTAAAGGAA+AGG | - | chr1_4:45660608-45660627 | None:intergenic | 25.0% |
| ! | ATGAAAATAAGCAAAATGAC+TGG | - | chr1_4:45660633-45660652 | None:intergenic | 25.0% |
| !! | TATTTTCATATCACGTCTAT+TGG | + | chr1_4:45660644-45660663 | Msa0165230:intron | 25.0% |
| !!! | TAGTAATATTTACTTTTGGG+AGG | + | chr1_4:45660686-45660705 | Msa0165230:intron | 25.0% |
| !!! | AGTAATATTTACTTTTGGGA+GGG | + | chr1_4:45660687-45660706 | Msa0165230:intron | 25.0% |
| ! | ATGTTATAATTAGCACTGTA+TGG | - | chr1_4:45660933-45660952 | None:intergenic | 25.0% |
| !!! | AGTCTTTTAAAGGATACAAA+CGG | - | chr1_4:45661019-45661038 | None:intergenic | 25.0% |
| !! | AAAGCAATTGGTTTCTTTAA+GGG | + | chr1_4:45661064-45661083 | Msa0165230:intron | 25.0% |
| !!! | CAGTCGATTATATTTAGTTT+TGG | - | chr1_4:45661251-45661270 | None:intergenic | 25.0% |
| !!! | GGTTTTGTGATCATAATTTT+AGG | + | chr1_4:45661373-45661392 | Msa0165230:intron | 25.0% |
| !! | TTTGTGATCATAATTTTAGG+AGG | + | chr1_4:45661376-45661395 | Msa0165230:intron | 25.0% |
| !!! | TTGTGATCATAATTTTAGGA+GGG | + | chr1_4:45661377-45661396 | Msa0165230:intron | 25.0% |
| ! | TTAGGTTAAGCTAAACAATT+AGG | + | chr1_4:45661407-45661426 | Msa0165230:intron | 25.0% |
| !!! | TGTTATGCCATTTTTTTTAC+TGG | + | chr1_4:45661510-45661529 | Msa0165230:intron | 25.0% |
| ! | GTGATTTCCAGTAAAAAAAA+TGG | - | chr1_4:45661520-45661539 | None:intergenic | 25.0% |
| !! | GATATTTTTCTTCTTTGCTT+AGG | + | chr1_4:45661635-45661654 | Msa0165230:intron | 25.0% |
| ! | ATATACTAATTGTGTGATTG+TGG | + | chr1_4:45661813-45661832 | Msa0165230:intron | 25.0% |
| ! | TAATGTATTTCTTAAGAGGA+AGG | + | chr1_4:45661884-45661903 | Msa0165230:CDS | 25.0% |
| ! | AGCCATCATCTTAAATAATT+TGG | + | chr1_4:45662478-45662497 | Msa0165230:intron | 25.0% |
| ! | AAGCAACTTTCAAAAATTAG+TGG | + | chr1_4:45663027-45663046 | Msa0165230:intron | 25.0% |
| ! | AGCAACTTTCAAAAATTAGT+GGG | + | chr1_4:45663028-45663047 | Msa0165230:intron | 25.0% |
| ! | AATAAATTAAGTGTGATCAG+TGG | - | chr1_4:45663088-45663107 | None:intergenic | 25.0% |
| !! | TGCATTTTCCACATTATTTT+GGG | - | chr1_4:45663446-45663465 | None:intergenic | 25.0% |
| !! | ATGCATTTTCCACATTATTT+TGG | - | chr1_4:45663447-45663466 | None:intergenic | 25.0% |
| !! | AGTATATTTTGCTGGAAATT+CGG | + | chr1_4:45663469-45663488 | Msa0165230:intron | 25.0% |
| !!! | AATTTGACTATGTTTTTGAC+TGG | + | chr1_4:45663532-45663551 | Msa0165230:CDS | 25.0% |
| ! | AGCTGAATAAGAATGAAATT+CGG | + | chr1_4:45663751-45663770 | Msa0165230:intron | 25.0% |
| ! | GTAAACAAGGTAAAAAAAAG+GGG | - | chr1_4:45664185-45664204 | None:intergenic | 25.0% |
| ! | GGTAAACAAGGTAAAAAAAA+GGG | - | chr1_4:45664186-45664205 | None:intergenic | 25.0% |
| ! | TGGTAAACAAGGTAAAAAAA+AGG | - | chr1_4:45664187-45664206 | None:intergenic | 25.0% |
| !!! | ATCTTTTGTTTCTTTCCATA+AGG | - | chr1_4:45664774-45664793 | None:intergenic | 25.0% |
| !! | AAACAAAAGATTCAAGTTCA+TGG | + | chr1_4:45664783-45664802 | Msa0165230:three_prime_UTR | 25.0% |
| !! | ATTTAAAGCAACGAATGATA+TGG | + | chr1_4:45665094-45665113 | Msa0165230:three_prime_UTR | 25.0% |
| CAAAAGTAGTTTCACAAGTT+TGG | - | chr1_4:45657665-45657684 | None:intergenic | 30.0% | |
| TTGGAAAAACAGAATAAGGT+AGG | - | chr1_4:45657732-45657751 | None:intergenic | 30.0% | |
| !! | ATTGATTATTCTGGGATGAT+TGG | + | chr1_4:45657810-45657829 | Msa0165230:five_prime_UTR | 30.0% |
| !!! | ATGATTGGTTTTGGTTCTTT+TGG | + | chr1_4:45657825-45657844 | Msa0165230:five_prime_UTR | 30.0% |
| !!! | TGATTGGTTTTGGTTCTTTT+GGG | + | chr1_4:45657826-45657845 | Msa0165230:five_prime_UTR | 30.0% |
| TGAATAATTCCTCATTCATG+AGG | + | chr1_4:45657881-45657900 | Msa0165230:five_prime_UTR | 30.0% | |
| CAAGATTAAATGCAAATTGG+GGG | - | chr1_4:45657938-45657957 | None:intergenic | 30.0% | |
| ! | TTGTGAATTTTTGTTGGGTT+TGG | + | chr1_4:45657967-45657986 | Msa0165230:five_prime_UTR | 30.0% |
| !! | GTGAATTTTGGAAGAAAGTT+AGG | + | chr1_4:45657989-45658008 | Msa0165230:five_prime_UTR | 30.0% |
| TTTGAATTTGTCCACAATCA+AGG | + | chr1_4:45658079-45658098 | Msa0165230:five_prime_UTR | 30.0% | |
| TTGAATTTGTCCACAATCAA+GGG | + | chr1_4:45658080-45658099 | Msa0165230:five_prime_UTR | 30.0% | |
| TTTATCATGGATCATGTGAT+TGG | + | chr1_4:45658127-45658146 | Msa0165230:exon | 30.0% | |
| ATTGGTGGAAAGTTTAAACT+TGG | + | chr1_4:45658145-45658164 | Msa0165230:CDS | 30.0% | |
| TCAGCTGTTAATATACAAAC+TGG | + | chr1_4:45658311-45658330 | Msa0165230:intron | 30.0% | |
| TGTTAATATACAAACTGGAG+AGG | + | chr1_4:45658316-45658335 | Msa0165230:CDS | 30.0% | |
| TCTTGAAATGAGATGTGAAA+TGG | + | chr1_4:45658607-45658626 | Msa0165230:intron | 30.0% | |
| !! | TTTTTGTTATCAGTTAGTGG+TGG | + | chr1_4:45658759-45658778 | Msa0165230:intron | 30.0% |
| TTGAATAAATCTTCCAGACT+GGG | - | chr1_4:45658994-45659013 | None:intergenic | 30.0% | |
| ATTGAATAAATCTTCCAGAC+TGG | - | chr1_4:45658995-45659014 | None:intergenic | 30.0% | |
| AGACAGACTTACTAATTGAT+CGG | - | chr1_4:45659061-45659080 | None:intergenic | 30.0% | |
| ! | CCTCTATCAAACTTTTCAAA+AGG | - | chr1_4:45659343-45659362 | None:intergenic | 30.0% |
| !! | CCTTTTGAAAAGTTTGATAG+AGG | + | chr1_4:45659340-45659359 | Msa0165230:intron | 30.0% |
| AAAAGTTTGATAGAGGAGTA+TGG | + | chr1_4:45659347-45659366 | Msa0165230:intron | 30.0% | |
| ! | AAAGTTTGATAGAGGAGTAT+GGG | + | chr1_4:45659348-45659367 | Msa0165230:intron | 30.0% |
| ! | CCCTATCATAATTCTTTTCT+AGG | - | chr1_4:45659409-45659428 | None:intergenic | 30.0% |
| CTATAGACAAGTATAACACA+TGG | + | chr1_4:45659432-45659451 | Msa0165230:intron | 30.0% | |
| ! | CTGTCATATATTTTCTTGTG+TGG | + | chr1_4:45659528-45659547 | Msa0165230:intron | 30.0% |
| CATAGTTGAAGAGTCTAAAT+AGG | + | chr1_4:45659561-45659580 | Msa0165230:intron | 30.0% | |
| GTATGACCTGAATATTAAGA+GGG | + | chr1_4:45659691-45659710 | Msa0165230:intron | 30.0% | |
| TATGACCTGAATATTAAGAG+GGG | + | chr1_4:45659692-45659711 | Msa0165230:intron | 30.0% | |
| ATATTCCCCTCTTAATATTC+AGG | - | chr1_4:45659700-45659719 | None:intergenic | 30.0% | |
| GAATATTAAGAGGGGAATAT+TGG | + | chr1_4:45659700-45659719 | Msa0165230:intron | 30.0% | |
| TGGAGAAAGATATAAATCGT+AGG | + | chr1_4:45659797-45659816 | Msa0165230:intron | 30.0% | |
| ! | ATTTCCTTCAAACTTTTGAG+AGG | - | chr1_4:45659880-45659899 | None:intergenic | 30.0% |
| ! | TTTAGAGATGAGAATTTTGC+AGG | + | chr1_4:45659927-45659946 | Msa0165230:intron | 30.0% |
| ! | TTAGAGATGAGAATTTTGCA+GGG | + | chr1_4:45659928-45659947 | Msa0165230:intron | 30.0% |
| GAAAAGATATGATTGTGCAA+TGG | + | chr1_4:45659968-45659987 | Msa0165230:intron | 30.0% | |
| ! | TAGTTTTTGACAGAATGCAA+CGG | + | chr1_4:45660365-45660384 | Msa0165230:intron | 30.0% |
| !!! | CATTTGATTCGTGGTTTTAA+TGG | + | chr1_4:45660391-45660410 | Msa0165230:intron | 30.0% |
| !! | GTTTTAATGGTTGTGTAGTT+TGG | + | chr1_4:45660404-45660423 | Msa0165230:intron | 30.0% |
| ! | TTGTGTAGTTTGGATGATTT+TGG | + | chr1_4:45660414-45660433 | Msa0165230:intron | 30.0% |
| TACCCATTATAATGAGTCTT+CGG | + | chr1_4:45660472-45660491 | Msa0165230:intron | 30.0% | |
| TGGTTGAGTAACATTTGAAT+TGG | + | chr1_4:45660521-45660540 | Msa0165230:intron | 30.0% | |
| ! | TGGTGAACTTAGGATTTTAA+AGG | - | chr1_4:45660613-45660632 | None:intergenic | 30.0% |
| CAACTCAACATTATACTCAA+GGG | - | chr1_4:45660809-45660828 | None:intergenic | 30.0% | |
| !! | TCAGTTTATTGATTTCATCG+TGG | + | chr1_4:45660899-45660918 | Msa0165230:intron | 30.0% |
| TATAATTAGCACTGTATGGT+TGG | - | chr1_4:45660929-45660948 | None:intergenic | 30.0% | |
| ! | CAAAGCAATTGGTTTCTTTA+AGG | + | chr1_4:45661063-45661082 | Msa0165230:intron | 30.0% |
| GTGCTAATGTATTTCTTAAG+AGG | + | chr1_4:45661880-45661899 | Msa0165230:CDS | 30.0% | |
| CAAGTCATAATTACCTCTAT+TGG | - | chr1_4:45662066-45662085 | None:intergenic | 30.0% | |
| AAAAAAAAACTGACAGATGC+AGG | - | chr1_4:45662093-45662112 | None:intergenic | 30.0% | |
| AATATTTCAATCACACTCAG+TGG | + | chr1_4:45662404-45662423 | Msa0165230:intron | 30.0% | |
| GATGTACAATACTAACTTAG+AGG | + | chr1_4:45662522-45662541 | Msa0165230:intron | 30.0% | |
| AAGCATTCCTAAAGATGTTA+TGG | - | chr1_4:45662935-45662954 | None:intergenic | 30.0% | |
| ! | ATAACATCTTTAGGAATGCT+TGG | + | chr1_4:45662934-45662953 | Msa0165230:intron | 30.0% |
| GCAACTTTCAAAAATTAGTG+GGG | + | chr1_4:45663029-45663048 | Msa0165230:intron | 30.0% | |
| CAACTTTCAAAAATTAGTGG+GGG | + | chr1_4:45663030-45663049 | Msa0165230:intron | 30.0% | |
| !!! | ATAACATTTTAGGGTGTGTT+TGG | - | chr1_4:45663192-45663211 | None:intergenic | 30.0% |
| ! | AGATTTTACATGAGACAGAA+GGG | - | chr1_4:45663240-45663259 | None:intergenic | 30.0% |
| ! | AAGATTTTACATGAGACAGA+AGG | - | chr1_4:45663241-45663260 | None:intergenic | 30.0% |
| AAGTATGATACAAACTCAGA+GGG | - | chr1_4:45663329-45663348 | None:intergenic | 30.0% | |
| ACATACCTTCTCGAATAAAA+AGG | - | chr1_4:45663421-45663440 | None:intergenic | 30.0% | |
| GTATGTTACCCAAAATAATG+TGG | + | chr1_4:45663435-45663454 | Msa0165230:intron | 30.0% | |
| ! | ATGCATTCAGTATATTTTGC+TGG | + | chr1_4:45663461-45663480 | Msa0165230:intron | 30.0% |
| ! | ATCTTTTGTGCTTTATGTAC+TGG | - | chr1_4:45663712-45663731 | None:intergenic | 30.0% |
| ! | TTCATGCTATTTGTTTCAGT+TGG | + | chr1_4:45663907-45663926 | Msa0165230:intron | 30.0% |
| ! | TCATGCTATTTGTTTCAGTT+GGG | + | chr1_4:45663908-45663927 | Msa0165230:intron | 30.0% |
| !! | ATATCGAGTTGAATTGTGTT+GGG | - | chr1_4:45664472-45664491 | None:intergenic | 30.0% |
| ! | TGGATATGCAATGTTATTTG+TGG | + | chr1_4:45665001-45665020 | Msa0165230:three_prime_UTR | 30.0% |
| ACAGTGAATGTAGTTTAACA+AGG | + | chr1_4:45665044-45665063 | Msa0165230:three_prime_UTR | 30.0% | |
| TTGCTATGAATATGGTAACT+CGG | - | chr1_4:45665138-45665157 | None:intergenic | 30.0% | |
| TTCACAAGTTTGGAGATGAA+CGG | - | chr1_4:45657655-45657674 | None:intergenic | 35.0% | |
| GAATAAGGTAGGAAAAGAGA+AGG | - | chr1_4:45657721-45657740 | None:intergenic | 35.0% | |
| !!! | TATTCTGGGATGATTGGTTT+TGG | + | chr1_4:45657816-45657835 | Msa0165230:five_prime_UTR | 35.0% |
| TTGAAACATCCTCATGAATG+AGG | - | chr1_4:45657893-45657912 | None:intergenic | 35.0% | |
| !!! | TTGTTGGGTTTGGTGAATTT+TGG | + | chr1_4:45657977-45657996 | Msa0165230:five_prime_UTR | 35.0% |
| TTGTGGACAAATTCAAACAG+AGG | - | chr1_4:45658076-45658095 | None:intergenic | 35.0% | |
| GGGCTGAATTCAATATTTGA+AGG | + | chr1_4:45658100-45658119 | Msa0165230:five_prime_UTR | 35.0% | |
| GTGGAAAGTTTAAACTTGGA+AGG | + | chr1_4:45658149-45658168 | Msa0165230:CDS | 35.0% | |
| ! | AAAATTGGGAGTGGTTCTTT+TGG | + | chr1_4:45658172-45658191 | Msa0165230:CDS | 35.0% |
| !! | TCTTTTGGAGAGCTCTATTT+AGG | + | chr1_4:45658187-45658206 | Msa0165230:CDS | 35.0% |
| TAATATACAAACTGGAGAGG+AGG | + | chr1_4:45658319-45658338 | Msa0165230:CDS | 35.0% | |
| CTTGCGATATCATTTATCGA+AGG | + | chr1_4:45658527-45658546 | Msa0165230:intron | 35.0% | |
| ! | GTTAACTTTTGGTCAATAGG+TGG | + | chr1_4:45658575-45658594 | Msa0165230:intron | 35.0% |
| TCCAATTTCCAATTGTCTCA+CGG | + | chr1_4:45658807-45658826 | Msa0165230:intron | 35.0% | |
| GGTTCTGTCAAAAATATTCC+AGG | + | chr1_4:45658828-45658847 | Msa0165230:intron | 35.0% | |
| CTGTATATGATTCTTCAAGG+AGG | + | chr1_4:45658895-45658914 | Msa0165230:CDS | 35.0% | |
| GTTGAATACATGCATTCAAG+AGG | + | chr1_4:45659177-45659196 | Msa0165230:CDS | 35.0% | |
| !! | AATTGTCTGGCTTTATGTCT+CGG | - | chr1_4:45659212-45659231 | None:intergenic | 35.0% |
| ! | AAAGCCAGACAATTTTCTGA+TGG | + | chr1_4:45659218-45659237 | Msa0165230:CDS | 35.0% |
| ! | AAGCCAGACAATTTTCTGAT+GGG | + | chr1_4:45659219-45659238 | Msa0165230:CDS | 35.0% |
| ATTGAACCCACAATAGACAA+AGG | - | chr1_4:45659317-45659336 | None:intergenic | 35.0% | |
| AGACAAGTATAACACATGGT+AGG | + | chr1_4:45659436-45659455 | Msa0165230:intron | 35.0% | |
| GACAAGTATAACACATGGTA+GGG | + | chr1_4:45659437-45659456 | Msa0165230:intron | 35.0% | |
| ATGTTCTTACTAGCATATCC+AGG | + | chr1_4:45659497-45659516 | Msa0165230:intron | 35.0% | |
| !! | ATTTTCTTGTGTGGGTTGTA+TGG | + | chr1_4:45659537-45659556 | Msa0165230:intron | 35.0% |
| GGTATGACCTGAATATTAAG+AGG | + | chr1_4:45659690-45659709 | Msa0165230:intron | 35.0% | |
| TATTAAGAGGGGAATATTGG+AGG | + | chr1_4:45659703-45659722 | Msa0165230:intron | 35.0% | |
| CATATTAATGCCACAACACA+AGG | + | chr1_4:45659727-45659746 | Msa0165230:intron | 35.0% | |
| CTTGGTATGATAGATTCAAG+GGG | - | chr1_4:45659766-45659785 | None:intergenic | 35.0% | |
| GCTTGGTATGATAGATTCAA+GGG | - | chr1_4:45659767-45659786 | None:intergenic | 35.0% | |
| ! | TTCAAGTGAGTTGGATGAAA+TGG | + | chr1_4:45659821-45659840 | Msa0165230:intron | 35.0% |
| AAACACTTGACTTCTCTTGT+TGG | - | chr1_4:45659909-45659928 | None:intergenic | 35.0% | |
| ! | TAGAGATGAGAATTTTGCAG+GGG | + | chr1_4:45659929-45659948 | Msa0165230:intron | 35.0% |
| ! | TGTTTTTCCTACTCTCTCTT+GGG | - | chr1_4:45660025-45660044 | None:intergenic | 35.0% |
| AGAATCTTGTCTAACATGTG+AGG | + | chr1_4:45660065-45660084 | Msa0165230:intron | 35.0% | |
| TGCTTGATTGCACTATGTAA+CGG | - | chr1_4:45660286-45660305 | None:intergenic | 35.0% | |
| TGCCGAAGACTCATTATAAT+GGG | - | chr1_4:45660477-45660496 | None:intergenic | 35.0% | |
| ATGCCGAAGACTCATTATAA+TGG | - | chr1_4:45660478-45660497 | None:intergenic | 35.0% | |
| GAAAAACTCAAGGACAAACA+TGG | - | chr1_4:45660560-45660579 | None:intergenic | 35.0% | |
| GAGTACTCTTGAAAAACTCA+AGG | - | chr1_4:45660570-45660589 | None:intergenic | 35.0% | |
| AGCGTAAGTCATTGAACTAA+AGG | - | chr1_4:45660722-45660741 | None:intergenic | 35.0% | |
| TTTCCTAAATTTGTCGTGCA+GGG | - | chr1_4:45660775-45660794 | None:intergenic | 35.0% | |
| ATTTCCTAAATTTGTCGTGC+AGG | - | chr1_4:45660776-45660795 | None:intergenic | 35.0% | |
| CCAACTCAACATTATACTCA+AGG | - | chr1_4:45660810-45660829 | None:intergenic | 35.0% | |
| CCTTGAGTATAATGTTGAGT+TGG | + | chr1_4:45660807-45660826 | Msa0165230:intron | 35.0% | |
| ! | TTTGACATGTGCACACATTT+TGG | + | chr1_4:45660852-45660871 | Msa0165230:intron | 35.0% |
| ! | CATTTTATCGTGTTAACGCT+AGG | - | chr1_4:45660982-45661001 | None:intergenic | 35.0% |
| GGATACAAACGGTTAAGTTT+AGG | - | chr1_4:45661008-45661027 | None:intergenic | 35.0% | |
| ! | TCATTTTGTAGTCTCCTTGT+TGG | + | chr1_4:45661039-45661058 | Msa0165230:intron | 35.0% |
| ! | CAATTGGTTTCTTTAAGGGT+GGG | + | chr1_4:45661068-45661087 | Msa0165230:intron | 35.0% |
| !!! | GATCCCTATATTTTTTCGCA+AGG | - | chr1_4:45661322-45661341 | None:intergenic | 35.0% |
| !! | TTTTAGGAGGGAGCAATATT+AGG | + | chr1_4:45661389-45661408 | Msa0165230:intron | 35.0% |
| TGAGATCAATGGGAATTTGT+GGG | - | chr1_4:45661600-45661619 | None:intergenic | 35.0% | |
| TTGAGATCAATGGGAATTTG+TGG | - | chr1_4:45661601-45661620 | None:intergenic | 35.0% | |
| AGGGAAAATAAGAACCTTAC+AGG | + | chr1_4:45661655-45661674 | Msa0165230:intron | 35.0% | |
| AAATAAGAACCTTACAGGCA+CGG | + | chr1_4:45661660-45661679 | Msa0165230:CDS | 35.0% | |
| ! | CGGTAAGTGATATTTTATGC+TGG | + | chr1_4:45661717-45661736 | Msa0165230:intron | 35.0% |
| !! | ATGCTGGTTTGTTACTTTCT+CGG | + | chr1_4:45661733-45661752 | Msa0165230:intron | 35.0% |
| TACTAATTGTGTGATTGTGG+TGG | + | chr1_4:45661816-45661835 | Msa0165230:intron | 35.0% | |
| ATGCAATAGTGCTCAATAAC+TGG | - | chr1_4:45662150-45662169 | None:intergenic | 35.0% | |
| CAGTTGAATGCAGGAAATAT+AGG | - | chr1_4:45662243-45662262 | None:intergenic | 35.0% | |
| CATTCAACTGTTAGCACTTA+GGG | + | chr1_4:45662253-45662272 | Msa0165230:intron | 35.0% | |
| TAGCCAGAAACTTTGAATAG+TGG | + | chr1_4:45662429-45662448 | Msa0165230:intron | 35.0% | |
| AGCCAGAAACTTTGAATAGT+GGG | + | chr1_4:45662430-45662449 | Msa0165230:intron | 35.0% | |
| !! | AACACAACAGAAAGTGTTGA+GGG | + | chr1_4:45662880-45662899 | Msa0165230:intron | 35.0% |
| !! | AGCCAAGCGTTTTTGTTTAA+AGG | + | chr1_4:45662907-45662926 | Msa0165230:intron | 35.0% |
| AGCCTTTAAACAAAAACGCT+TGG | - | chr1_4:45662912-45662931 | None:intergenic | 35.0% | |
| AAAGGCTCCATAACATCTTT+AGG | + | chr1_4:45662925-45662944 | Msa0165230:intron | 35.0% | |
| AAATTAAGTGTGATCAGTGG+CGG | - | chr1_4:45663085-45663104 | None:intergenic | 35.0% | |
| GAAGTATGATACAAACTCAG+AGG | - | chr1_4:45663330-45663349 | None:intergenic | 35.0% | |
| CTTCTCGAATAAAAAGGTCT+CGG | - | chr1_4:45663415-45663434 | None:intergenic | 35.0% | |
| ! | ATATTTTGCTGGAAATTCGG+TGG | + | chr1_4:45663472-45663491 | Msa0165230:intron | 35.0% |
| CATAAAGCACAAAAGATTCC+AGG | + | chr1_4:45663715-45663734 | Msa0165230:CDS | 35.0% | |
| ATCATCATAAGTCCTATGTC+TGG | - | chr1_4:45664025-45664044 | None:intergenic | 35.0% | |
| ! | ACATAGGACTTATGATGATG+TGG | + | chr1_4:45664026-45664045 | Msa0165230:CDS | 35.0% |
| !! | TGAGAATGTTGTTTCCTGTT+TGG | + | chr1_4:45664103-45664122 | Msa0165230:intron | 35.0% |
| !! | CATATCGAGTTGAATTGTGT+TGG | - | chr1_4:45664473-45664492 | None:intergenic | 35.0% |
| CAACACAATTCAACTCGATA+TGG | + | chr1_4:45664471-45664490 | Msa0165230:CDS | 35.0% | |
| !! | ATTTGGCTTTGATGATACCA+TGG | - | chr1_4:45664514-45664533 | None:intergenic | 35.0% |
| ACTATCAGGAAGTAATCTCA+AGG | + | chr1_4:45664693-45664712 | Msa0165230:exon | 35.0% | |
| CTATCAGGAAGTAATCTCAA+GGG | + | chr1_4:45664694-45664713 | Msa0165230:exon | 35.0% | |
| !! | TTTCTAAATTTTGGCACACC+TGG | + | chr1_4:45664736-45664755 | Msa0165230:three_prime_UTR | 35.0% |
| !! | TTCTAAATTTTGGCACACCT+GGG | + | chr1_4:45664737-45664756 | Msa0165230:three_prime_UTR | 35.0% |
| AATTACCATTGAGGTCACAA+TGG | + | chr1_4:45664815-45664834 | Msa0165230:three_prime_UTR | 35.0% | |
| !! | AATCTTCTGAAGCAATCTGA+GGG | - | chr1_4:45664869-45664888 | None:intergenic | 35.0% |
| !! | AAATCTTCTGAAGCAATCTG+AGG | - | chr1_4:45664870-45664889 | None:intergenic | 35.0% |
| !! | TTGAGTTGTAGCAAGTTTTG+TGG | + | chr1_4:45664981-45665000 | Msa0165230:three_prime_UTR | 35.0% |
| !! | AGGAAAAGAGAAGGTATCTG+TGG | - | chr1_4:45657712-45657731 | None:intergenic | 40.0% |
| !!! | GTTTTGGTTCTTTTGGGTGA+AGG | + | chr1_4:45657832-45657851 | Msa0165230:five_prime_UTR | 40.0% |
| TTTGGGTGAAGGAATGTAGT+TGG | + | chr1_4:45657843-45657862 | Msa0165230:five_prime_UTR | 40.0% | |
| GGACAAATTCAAACAGAGGA+AGG | - | chr1_4:45658072-45658091 | None:intergenic | 40.0% | |
| TTGAATTCAGCCCTTGATTG+TGG | - | chr1_4:45658093-45658112 | None:intergenic | 40.0% | |
| ATCATGGATCATGTGATTGG+TGG | + | chr1_4:45658130-45658149 | Msa0165230:exon | 40.0% | |
| TTGGTCAATAGGTGGATGAT+TGG | + | chr1_4:45658583-45658602 | Msa0165230:intron | 40.0% | |
| AGCTGCAAAACAGAATTGTG+AGG | - | chr1_4:45658647-45658666 | None:intergenic | 40.0% | |
| ACCGTGAGACAATTGGAAAT+TGG | - | chr1_4:45658811-45658830 | None:intergenic | 40.0% | |
| TTTGACTCATAGTGAAGCTG+TGG | - | chr1_4:45658874-45658893 | None:intergenic | 40.0% | |
| ATGATTCTTCAAGGAGGAAC+TGG | + | chr1_4:45658901-45658920 | Msa0165230:CDS | 40.0% | |
| ! | AACTCCAAACCATTTGAGGT+GGG | - | chr1_4:45658932-45658951 | None:intergenic | 40.0% |
| ! | CTCAAATGGTTTGGAGTTGA+GGG | + | chr1_4:45658934-45658953 | Msa0165230:CDS | 40.0% |
| CCGACTTCAAAGTGAATTTC+CGG | - | chr1_4:45659026-45659045 | None:intergenic | 40.0% | |
| !! | CCGGAAATTCACTTTGAAGT+CGG | + | chr1_4:45659023-45659042 | Msa0165230:CDS | 40.0% |
| AGTAAGTCTGTCTGTCAAGT+TGG | + | chr1_4:45659068-45659087 | Msa0165230:intron | 40.0% | |
| TTCTTACTAGCATATCCAGG+AGG | + | chr1_4:45659500-45659519 | Msa0165230:intron | 40.0% | |
| ! | ACATTTGTTGAGTCCCACAT+TGG | + | chr1_4:45659663-45659682 | Msa0165230:intron | 40.0% |
| GGTCATACCATATCCAATGT+GGG | - | chr1_4:45659679-45659698 | None:intergenic | 40.0% | |
| AGGTCATACCATATCCAATG+TGG | - | chr1_4:45659680-45659699 | None:intergenic | 40.0% | |
| CGCTTGGTATGATAGATTCA+AGG | - | chr1_4:45659768-45659787 | None:intergenic | 40.0% | |
| ATCGTAGGATTCAAGTGAGT+TGG | + | chr1_4:45659812-45659831 | Msa0165230:intron | 40.0% | |
| GGTACCTCTCAAAAGTTTGA+AGG | + | chr1_4:45659873-45659892 | Msa0165230:intron | 40.0% | |
| TGTAAATTCGTAGTCCTGAC+AGG | - | chr1_4:45660001-45660020 | None:intergenic | 40.0% | |
| TTTACAACCCAAGAGAGAGT+AGG | + | chr1_4:45660015-45660034 | Msa0165230:intron | 40.0% | |
| ! | GTGTTTTTCCTACTCTCTCT+TGG | - | chr1_4:45660026-45660045 | None:intergenic | 40.0% |
| ! | CTGTTGCTCAGTTCTTTTCA+AGG | - | chr1_4:45660132-45660151 | None:intergenic | 40.0% |
| TCAAGGACAAACATGGAAAC+AGG | - | chr1_4:45660553-45660572 | None:intergenic | 40.0% | |
| !! | GGATTTTAAAGGAAAGGTCC+AGG | - | chr1_4:45660602-45660621 | None:intergenic | 40.0% |
| GCAAAATGACTGGTGAACTT+AGG | - | chr1_4:45660623-45660642 | None:intergenic | 40.0% | |
| GCATGCAAGTGACTTTATGT+TGG | + | chr1_4:45660874-45660893 | Msa0165230:intron | 40.0% | |
| TCCTTGTTGGTCAAAGCAAT+TGG | + | chr1_4:45661052-45661071 | Msa0165230:intron | 40.0% | |
| ACCAATTGCTTTGACCAACA+AGG | - | chr1_4:45661056-45661075 | None:intergenic | 40.0% | |
| ! | GCAATTGGTTTCTTTAAGGG+TGG | + | chr1_4:45661067-45661086 | Msa0165230:intron | 40.0% |
| GGTGGGAATTTCTTAATCGT+TGG | + | chr1_4:45661085-45661104 | Msa0165230:intron | 40.0% | |
| CACACTCTGTATCTCATTTC+AGG | + | chr1_4:45661277-45661296 | Msa0165230:intron | 40.0% | |
| TCGGCCTTGCGAAAAAATAT+AGG | + | chr1_4:45661315-45661334 | Msa0165230:CDS | 40.0% | |
| CGGCCTTGCGAAAAAATATA+GGG | + | chr1_4:45661316-45661335 | Msa0165230:CDS | 40.0% | |
| ATAGGGATCTTCAGACTCAT+AGG | + | chr1_4:45661333-45661352 | Msa0165230:CDS | 40.0% | |
| GATCACAAAACCAACCTGTA+CGG | - | chr1_4:45661365-45661384 | None:intergenic | 40.0% | |
| TGGCATAACAGCCTGTTAAA+GGG | - | chr1_4:45661500-45661519 | None:intergenic | 40.0% | |
| ATGGCATAACAGCCTGTTAA+AGG | - | chr1_4:45661501-45661520 | None:intergenic | 40.0% | |
| !! | TCACTTACCGATTCCAAGAT+GGG | - | chr1_4:45661707-45661726 | None:intergenic | 40.0% |
| !! | ATCACTTACCGATTCCAAGA+TGG | - | chr1_4:45661708-45661727 | None:intergenic | 40.0% |
| !! | GGTTTGTTACTTTCTCGGTT+AGG | + | chr1_4:45661738-45661757 | Msa0165230:intron | 40.0% |
| !!! | TTTCCTTTTTCAGTCTTCCC+TGG | + | chr1_4:45661974-45661993 | Msa0165230:intron | 40.0% |
| CGATAAAATCAGTGAGACGA+AGG | + | chr1_4:45662032-45662051 | Msa0165230:CDS | 40.0% | |
| !! | GAAGGTATCAACTCCAATAG+AGG | + | chr1_4:45662050-45662069 | Msa0165230:CDS | 40.0% |
| AAGTGCTAACAGTTGAATGC+AGG | - | chr1_4:45662252-45662271 | None:intergenic | 40.0% | |
| GCATTCAACTGTTAGCACTT+AGG | + | chr1_4:45662252-45662271 | Msa0165230:intron | 40.0% | |
| GCCAGAAACTTTGAATAGTG+GGG | + | chr1_4:45662431-45662450 | Msa0165230:intron | 40.0% | |
| CCAGAAACTTTGAATAGTGG+GGG | + | chr1_4:45662432-45662451 | Msa0165230:intron | 40.0% | |
| CTCAACACTTTCTGTTGTGT+TGG | - | chr1_4:45662881-45662900 | None:intergenic | 40.0% | |
| !! | CAACACAACAGAAAGTGTTG+AGG | + | chr1_4:45662879-45662898 | Msa0165230:intron | 40.0% |
| TTTGGATTGAGGGTTTAGGA+GGG | - | chr1_4:45663174-45663193 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | - | chr1_4:45663178-45663197 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | - | chr1_4:45663184-45663203 | None:intergenic | 40.0% | |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | - | chr1_4:45663185-45663204 | None:intergenic | 40.0% |
| ! | CGAGACCTTTTTATTCGAGA+AGG | + | chr1_4:45663413-45663432 | Msa0165230:CDS | 40.0% |
| ! | TTGAAGTATCCACAGAGTAG+TGG | + | chr1_4:45663561-45663580 | Msa0165230:CDS | 40.0% |
| ! | TTTTTGTTGGTCGCTTACTG+TGG | + | chr1_4:45663635-45663654 | Msa0165230:intron | 40.0% |
| TTTCAGTTGGGAGAGAGATT+CGG | + | chr1_4:45663920-45663939 | Msa0165230:intron | 40.0% | |
| GAGATTCGGGAGAAATTATC+TGG | + | chr1_4:45663934-45663953 | Msa0165230:CDS | 40.0% | |
| AACGTCTTGTCAAACCAAAC+AGG | - | chr1_4:45664120-45664139 | None:intergenic | 40.0% | |
| TCATCAAAGCCAAATTCCTC+AGG | + | chr1_4:45664519-45664538 | Msa0165230:CDS | 40.0% | |
| GCTTGTTTCGTATCATACAC+AGG | - | chr1_4:45664606-45664625 | None:intergenic | 40.0% | |
| ! | AAGCAACTTTTGCTCGCAAT+GGG | + | chr1_4:45664622-45664641 | Msa0165230:CDS | 40.0% |
| ! | GAGATTACTTCCTGATAGTG+AGG | - | chr1_4:45664692-45664711 | None:intergenic | 40.0% |
| ATAAGGCTTCTTGAAATCCC+AGG | - | chr1_4:45664757-45664776 | None:intergenic | 40.0% | |
| TGGGATTTCAAGAAGCCTTA+TGG | + | chr1_4:45664756-45664775 | Msa0165230:three_prime_UTR | 40.0% | |
| AGGGGATCTAGAAATGATGT+CGG | - | chr1_4:45664850-45664869 | None:intergenic | 40.0% | |
| !! | ATCTTCTGAAGCAATCTGAG+GGG | - | chr1_4:45664868-45664887 | None:intergenic | 40.0% |
| !! | AACGAATGATATGGTGCTGT+AGG | + | chr1_4:45665103-45665122 | Msa0165230:three_prime_UTR | 40.0% |
| ACAAGTTTGGAGATGAACGG+AGG | - | chr1_4:45657652-45657671 | None:intergenic | 45.0% | |
| CTTGGAAGGAAAATTGGGAG+TGG | + | chr1_4:45658163-45658182 | Msa0165230:CDS | 45.0% | |
| TATACAAACTGGAGAGGAGG+TGG | + | chr1_4:45658322-45658341 | Msa0165230:CDS | 45.0% | |
| CGCAAGCATGCTCAATTTCA+TGG | - | chr1_4:45658513-45658532 | None:intergenic | 45.0% | |
| TGACAGAACCGTGAGACAAT+TGG | - | chr1_4:45658818-45658837 | None:intergenic | 45.0% | |
| ! | ACTCCAAACCATTTGAGGTG+GGG | - | chr1_4:45658931-45658950 | None:intergenic | 45.0% |
| CAACTCCAAACCATTTGAGG+TGG | - | chr1_4:45658933-45658952 | None:intergenic | 45.0% | |
| CCTCAACTCCAAACCATTTG+AGG | - | chr1_4:45658936-45658955 | None:intergenic | 45.0% | |
| ! | CCTCAAATGGTTTGGAGTTG+AGG | + | chr1_4:45658933-45658952 | Msa0165230:CDS | 45.0% |
| ! | TGAGGGAGAGTACAATGTCA+TGG | + | chr1_4:45658951-45658970 | Msa0165230:CDS | 45.0% |
| AGGCCCATCAGAAAATTGTC+TGG | - | chr1_4:45659225-45659244 | None:intergenic | 45.0% | |
| !! | GACAATTTTCTGATGGGCCT+CGG | + | chr1_4:45659225-45659244 | Msa0165230:CDS | 45.0% |
| !! | CTTGATTTGCTTTACGTCCG+AGG | - | chr1_4:45659245-45659264 | None:intergenic | 45.0% |
| TATATGACAGCGTTACCTCC+TGG | - | chr1_4:45659518-45659537 | None:intergenic | 45.0% | |
| GTTGAGTCCCACATTGGATA+TGG | + | chr1_4:45659669-45659688 | Msa0165230:intron | 45.0% | |
| AAACTGTGCACCTTGTGTTG+TGG | - | chr1_4:45659740-45659759 | None:intergenic | 45.0% | |
| CAACACAAGGTGCACAGTTT+CGG | + | chr1_4:45659740-45659759 | Msa0165230:intron | 45.0% | |
| CATACCAAGCGACGAAGAAA+TGG | + | chr1_4:45659777-45659796 | Msa0165230:intron | 45.0% | |
| TTCTCCATTTCTTCGTCGCT+TGG | - | chr1_4:45659784-45659803 | None:intergenic | 45.0% | |
| ! | AGAATTTTGCAGGGGATGAG+TGG | + | chr1_4:45659937-45659956 | Msa0165230:intron | 45.0% |
| GCAATGGAATAACACCTGTC+AGG | + | chr1_4:45659984-45660003 | Msa0165230:intron | 45.0% | |
| GAGGAGTCTAATAGAAACCC+TGG | + | chr1_4:45660084-45660103 | Msa0165230:intron | 45.0% | |
| GCAGGGATCTATGCTATGAA+CGG | - | chr1_4:45660758-45660777 | None:intergenic | 45.0% | |
| GATCCCTGCACGACAAATTT+AGG | + | chr1_4:45660769-45660788 | Msa0165230:intron | 45.0% | |
| !! | CAGGTGTATGCCATTGACTT+CGG | + | chr1_4:45661296-45661315 | Msa0165230:intron | 45.0% |
| CGCATTTGCATCCCTTTAAC+AGG | + | chr1_4:45661486-45661505 | Msa0165230:intron | 45.0% | |
| GTCAACACCCATCTTGGAAT+CGG | + | chr1_4:45661697-45661716 | Msa0165230:CDS | 45.0% | |
| ACAAAGTCGAAGGGATGATC+TGG | + | chr1_4:45661843-45661862 | Msa0165230:CDS | 45.0% | |
| ! | AGGGATGATCTGGAATCTCT+TGG | + | chr1_4:45661853-45661872 | Msa0165230:CDS | 45.0% |
| TTGCCAGGGAAGACTGAAAA+AGG | - | chr1_4:45661980-45661999 | None:intergenic | 45.0% | |
| !! | TTTTTCAGTCTTCCCTGGCA+AGG | + | chr1_4:45661979-45661998 | Msa0165230:intron | 45.0% |
| GTTAGCACTTAGGGTGTGTT+TGG | + | chr1_4:45662262-45662281 | Msa0165230:intron | 45.0% | |
| CACTTAGGGTGTGTTTGGAT+GGG | + | chr1_4:45662267-45662286 | Msa0165230:intron | 45.0% | |
| GTGTGTTTGGATGGGTGTTT+AGG | + | chr1_4:45662275-45662294 | Msa0165230:intron | 45.0% | |
| TGTTTGGATGGGTGTTTAGG+AGG | + | chr1_4:45662278-45662297 | Msa0165230:intron | 45.0% | |
| GTTTGGATGGGTGTTTAGGA+GGG | + | chr1_4:45662279-45662298 | Msa0165230:intron | 45.0% | |
| TTTGGATGGGTGTTTAGGAG+GGG | + | chr1_4:45662280-45662299 | Msa0165230:intron | 45.0% | |
| CCCCCACTATTCAAAGTTTC+TGG | - | chr1_4:45662435-45662454 | None:intergenic | 45.0% | |
| AGCCACGTTAAGCTATCTGT+GGG | - | chr1_4:45663062-45663081 | None:intergenic | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr1_4:45663173-45663192 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | - | chr1_4:45663175-45663194 | None:intergenic | 45.0% | |
| GAGACAGAAGGGAAATGAAG+AGG | - | chr1_4:45663229-45663248 | None:intergenic | 45.0% | |
| TGTCCTCAAACCTCAACGAA+CGG | - | chr1_4:45663361-45663380 | None:intergenic | 45.0% | |
| TGGTTGTTGTAACGACAGCA+TGG | + | chr1_4:45663655-45663674 | Msa0165230:intron | 45.0% | |
| CTGTCACAGCACATATTAGC+AGG | - | chr1_4:45663780-45663799 | None:intergenic | 45.0% | |
| TTCAGTTGGGAGAGAGATTC+GGG | + | chr1_4:45663921-45663940 | Msa0165230:intron | 45.0% | |
| ! | TTGTTGAAGCATTCACCCAG+AGG | + | chr1_4:45663962-45663981 | Msa0165230:CDS | 45.0% |
| GCAAATTCTAGCCCTCATCA+CGG | + | chr1_4:45663991-45664010 | Msa0165230:CDS | 45.0% | |
| AAGCAGTTCAAGAAGAGCCA+TGG | + | chr1_4:45664494-45664513 | Msa0165230:CDS | 45.0% | |
| GAATGGTCACCTGAGGAATT+TGG | - | chr1_4:45664531-45664550 | None:intergenic | 45.0% | |
| AATTCCTCAGGTGACCATTC+TGG | + | chr1_4:45664531-45664550 | Msa0165230:CDS | 45.0% | |
| ! | CAAGCAACTTTTGCTCGCAA+TGG | + | chr1_4:45664621-45664640 | Msa0165230:CDS | 45.0% |
| TCATGCCATTGTGACCTCAA+TGG | - | chr1_4:45664823-45664842 | None:intergenic | 45.0% | |
| GGGGATCTAGAAATGATGTC+GGG | - | chr1_4:45664849-45664868 | None:intergenic | 45.0% | |
| !!! | TGATATTTTTTTTTTTTTTT+TGG | - | chr1_4:45657751-45657770 | None:intergenic | 5.0% |
| TGGAGATGAACGGAGGAAGT+GGG | - | chr1_4:45657645-45657664 | None:intergenic | 50.0% | |
| TTGGAGATGAACGGAGGAAG+TGG | - | chr1_4:45657646-45657665 | None:intergenic | 50.0% | |
| TGTGGTGTGCTGGATGAAAG+AGG | - | chr1_4:45657694-45657713 | None:intergenic | 50.0% | |
| !! | AGAAGGTATCTGTGGTGTGC+TGG | - | chr1_4:45657704-45657723 | None:intergenic | 50.0% |
| TCCAGGAATCTGTGAAGACC+AGG | + | chr1_4:45658845-45658864 | Msa0165230:intron | 50.0% | |
| ATAGTGAAGCTGTGGATGCC+TGG | - | chr1_4:45658866-45658885 | None:intergenic | 50.0% | |
| ATCCCCCACCTCAAATGGTT+TGG | + | chr1_4:45658925-45658944 | Msa0165230:CDS | 50.0% | |
| ! | CTCCAAACCATTTGAGGTGG+GGG | - | chr1_4:45658930-45658949 | None:intergenic | 50.0% |
| GTCATGGTCATCGACCTTCT+TGG | + | chr1_4:45658967-45658986 | Msa0165230:CDS | 50.0% | |
| CAAGCAACTGCAAGCTAGTC+AGG | + | chr1_4:45660300-45660319 | Msa0165230:intron | 50.0% | |
| ! | CAACGGCGTCATTTGATTCG+TGG | + | chr1_4:45660382-45660401 | Msa0165230:intron | 50.0% |
| ! | AGAGTACTCTCACTTCGTCC+TGG | + | chr1_4:45660581-45660600 | Msa0165230:intron | 50.0% |
| TTTCGCAAGGCCGAAGTCAA+TGG | - | chr1_4:45661309-45661328 | None:intergenic | 50.0% | |
| CTCATAGGCACATACCGTAC+AGG | + | chr1_4:45661348-45661367 | Msa0165230:CDS | 50.0% | |
| TAGGCACATACCGTACAGGT+TGG | + | chr1_4:45661352-45661371 | Msa0165230:intron | 50.0% | |
| GCAAGTGTCAACACCCATCT+TGG | + | chr1_4:45661691-45661710 | Msa0165230:CDS | 50.0% | |
| TGGTGGCAGAACAAAGTCGA+AGG | + | chr1_4:45661833-45661852 | Msa0165230:intron | 50.0% | |
| GGTGGCAGAACAAAGTCGAA+GGG | + | chr1_4:45661834-45661853 | Msa0165230:intron | 50.0% | |
| GCACTTAGGGTGTGTTTGGA+TGG | + | chr1_4:45662266-45662285 | Msa0165230:intron | 50.0% | |
| AGCCCACAGATAGCTTAACG+TGG | + | chr1_4:45663057-45663076 | Msa0165230:intron | 50.0% | |
| GAGCCACGTTAAGCTATCTG+TGG | - | chr1_4:45663063-45663082 | None:intergenic | 50.0% | |
| TGGATTGAGGGTTTAGGAGG+GGG | - | chr1_4:45663172-45663191 | None:intergenic | 50.0% | |
| TCCACTATTGCCGTTCGTTG+AGG | + | chr1_4:45663348-45663367 | Msa0165230:CDS | 50.0% | |
| ACCTCAACGAACGGCAATAG+TGG | - | chr1_4:45663352-45663371 | None:intergenic | 50.0% | |
| TTGCCGTTCGTTGAGGTTTG+AGG | + | chr1_4:45663355-45663374 | Msa0165230:CDS | 50.0% | |
| TCGGTGGTTGTGAATTGACG+TGG | + | chr1_4:45663488-45663507 | Msa0165230:intron | 50.0% | |
| CGGTGGTTGTGAATTGACGT+GGG | + | chr1_4:45663489-45663508 | Msa0165230:intron | 50.0% | |
| TTGTAACGACAGCATGGCAC+TGG | + | chr1_4:45663661-45663680 | Msa0165230:intron | 50.0% | |
| CAGCTGAAAGACAACAGACC+TGG | - | chr1_4:45663736-45663755 | None:intergenic | 50.0% | |
| AGAATTTGCGCGGTTCCTCT+GGG | - | chr1_4:45663980-45663999 | None:intergenic | 50.0% | |
| TAGAATTTGCGCGGTTCCTC+TGG | - | chr1_4:45663981-45664000 | None:intergenic | 50.0% | |
| GATGAGGGCTAGAATTTGCG+CGG | - | chr1_4:45663990-45664009 | None:intergenic | 50.0% | |
| TGGTGTGTTCACCGTGATGA+GGG | - | chr1_4:45664005-45664024 | None:intergenic | 50.0% | |
| ACGGTGAACACACCAGACAT+AGG | + | chr1_4:45664010-45664029 | Msa0165230:CDS | 50.0% | |
| TGAACTCTATGTGCGCCAGA+TGG | - | chr1_4:45664582-45664601 | None:intergenic | 50.0% | |
| AGCTCCTCAGAGGATCATCA+CGG | - | chr1_4:45664662-45664681 | None:intergenic | 50.0% | |
| ! | GCTTTGAGCTCCTCACTATC+AGG | + | chr1_4:45664679-45664698 | Msa0165230:CDS | 50.0% |
| !! | CGGAGGAAGTGGGTCTTGTT+TGG | - | chr1_4:45657635-45657654 | None:intergenic | 55.0% |
| AGAGGAGGTGGCTGTTAAGC+TGG | + | chr1_4:45658334-45658353 | Msa0165230:CDS | 55.0% | |
| ! | GCCTGGTCTTCACAGATTCC+TGG | - | chr1_4:45658849-45658868 | None:intergenic | 55.0% |
| CTGGAATCCCCCACCTCAAA+TGG | + | chr1_4:45658920-45658939 | Msa0165230:CDS | 55.0% | |
| CTTCCAGACTGGGTCCAAGA+AGG | - | chr1_4:45658984-45659003 | None:intergenic | 55.0% | |
| TCTTCCCTGGCAAGGACTGA+GGG | + | chr1_4:45661987-45662006 | Msa0165230:CDS | 55.0% | |
| GATGGGTGTTTAGGAGGGGA+GGG | + | chr1_4:45662284-45662303 | Msa0165230:intron | 55.0% | |
| ATGGGTGTTTAGGAGGGGAG+GGG | + | chr1_4:45662285-45662304 | Msa0165230:intron | 55.0% | |
| TGTTTAGGAGGGGAGGGGAA+GGG | + | chr1_4:45662290-45662309 | Msa0165230:intron | 55.0% | |
| TGAGGGTTTAGGAGGGGGAA+GGG | - | chr1_4:45663167-45663186 | None:intergenic | 55.0% | |
| TTGAGGGTTTAGGAGGGGGA+AGG | - | chr1_4:45663168-45663187 | None:intergenic | 55.0% | |
| !! | GACGTGGGCATTGATCATGC+AGG | + | chr1_4:45663504-45663523 | Msa0165230:intron | 55.0% |
| CTAGAGCTGCCACTACTCTG+TGG | - | chr1_4:45663573-45663592 | None:intergenic | 55.0% | |
| ! | CAGAGTAGTGGCAGCTCTAG+AGG | + | chr1_4:45663573-45663592 | Msa0165230:CDS | 55.0% |
| !! | GTAGTGGCAGCTCTAGAGGA+CGG | + | chr1_4:45663577-45663596 | Msa0165230:CDS | 55.0% |
| !! | TAGTGGCAGCTCTAGAGGAC+GGG | + | chr1_4:45663578-45663597 | Msa0165230:CDS | 55.0% |
| CTGGTGTGTTCACCGTGATG+AGG | - | chr1_4:45664006-45664025 | None:intergenic | 55.0% | |
| AGGTGACCATTCTGGCAGGA+TGG | + | chr1_4:45664539-45664558 | Msa0165230:CDS | 55.0% | |
| TTGTGGCCATCCTGCCAGAA+TGG | - | chr1_4:45664548-45664567 | None:intergenic | 55.0% | |
| CTCTATGTGCGCCAGATGGA+CGG | - | chr1_4:45664578-45664597 | None:intergenic | 55.0% | |
| GCTCGCAATGGGTCTATGAG+AGG | + | chr1_4:45664633-45664652 | Msa0165230:CDS | 55.0% | |
| TCCTCAGAGGATCATCACGG+TGG | - | chr1_4:45664659-45664678 | None:intergenic | 55.0% | |
| AGGAGCTCAAAGCTCCTCAG+AGG | - | chr1_4:45664672-45664691 | None:intergenic | 55.0% | |
| CGACCTTCTTGGACCCAGTC+TGG | + | chr1_4:45658978-45658997 | Msa0165230:CDS | 60.0% | |
| CATAGCGTGCCGTGCCTGTA+AGG | - | chr1_4:45661672-45661691 | None:intergenic | 60.0% | |
| GTCTTCCCTGGCAAGGACTG+AGG | + | chr1_4:45661986-45662005 | Msa0165230:intron | 60.0% | |
| GGATGGGTGTTTAGGAGGGG+AGG | + | chr1_4:45662283-45662302 | Msa0165230:intron | 60.0% | |
| GTGTTTAGGAGGGGAGGGGA+AGG | + | chr1_4:45662289-45662308 | Msa0165230:intron | 60.0% | |
| GTTTAGGAGGGGGAAGGGAG+GGG | - | chr1_4:45663162-45663181 | None:intergenic | 60.0% | |
| GGTTTAGGAGGGGGAAGGGA+GGG | - | chr1_4:45663163-45663182 | None:intergenic | 60.0% | |
| !! | ACGACAGCATGGCACTGGCA+AGG | + | chr1_4:45663666-45663685 | Msa0165230:intron | 60.0% |
| CCTGCCAGAATGGTCACCTG+AGG | - | chr1_4:45664538-45664557 | None:intergenic | 60.0% | |
| CCTCAGGTGACCATTCTGGC+AGG | + | chr1_4:45664535-45664554 | Msa0165230:CDS | 60.0% | |
| TCTGGCAGGATGGCCACAAG+TGG | + | chr1_4:45664549-45664568 | Msa0165230:CDS | 60.0% | |
| CTGGCAGGATGGCCACAAGT+GGG | + | chr1_4:45664550-45664569 | Msa0165230:CDS | 60.0% | |
| TGGCAGGATGGCCACAAGTG+GGG | + | chr1_4:45664551-45664570 | Msa0165230:CDS | 60.0% | |
| GCCACCGTGATGATCCTCTG+AGG | + | chr1_4:45664655-45664674 | Msa0165230:CDS | 60.0% | |
| CCAGCCCTCAGTCCTTGCCA+GGG | - | chr1_4:45661994-45662013 | None:intergenic | 65.0% | |
| TCCAGCCCTCAGTCCTTGCC+AGG | - | chr1_4:45661995-45662014 | None:intergenic | 65.0% | |
| TTAGGAGGGGAGGGGAAGGG+AGG | + | chr1_4:45662293-45662312 | Msa0165230:intron | 65.0% | |
| TAGGAGGGGAGGGGAAGGGA+GGG | + | chr1_4:45662294-45662313 | Msa0165230:intron | 65.0% | |
| GGGTTTAGGAGGGGGAAGGG+AGG | - | chr1_4:45663164-45663183 | None:intergenic | 65.0% | |
| GGCAGGATGGCCACAAGTGG+GGG | + | chr1_4:45664552-45664571 | Msa0165230:CDS | 65.0% | |
| AGATGGACGGCCCCCACTTG+TGG | - | chr1_4:45664565-45664584 | None:intergenic | 65.0% | |
| ACAAGTGGGGGCCGTCCATC+TGG | + | chr1_4:45664564-45664583 | Msa0165230:CDS | 65.0% | |
| CCCTGGCAAGGACTGAGGGC+TGG | + | chr1_4:45661991-45662010 | Msa0165230:CDS | 70.0% | |
| AGGAGGGGAGGGGAAGGGAG+GGG | + | chr1_4:45662295-45662314 | Msa0165230:intron | 70.0% | |
| AGGAGGGGGAAGGGAGGGGA+GGG | - | chr1_4:45663158-45663177 | None:intergenic | 70.0% | |
| TAGGAGGGGGAAGGGAGGGG+AGG | - | chr1_4:45663159-45663178 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 45657560 | 45665205 | 45657560 | ID=Msa0165230;Name=Msa0165230 |
| chr1_4 | mRNA | 45657560 | 45665205 | 45657560 | ID=Msa0165230-mRNA-1;Parent=Msa0165230;Name=Msa0165230-mRNA-1;_AED=0.09;_eAED=0.09;_QI=573|1|1|1|1|1|13|498|448 |
| chr1_4 | exon | 45657560 | 45658208 | 45657560 | ID=Msa0165230-mRNA-1:exon:13027;Parent=Msa0165230-mRNA-1 |
| chr1_4 | exon | 45658315 | 45658355 | 45658315 | ID=Msa0165230-mRNA-1:exon:13028;Parent=Msa0165230-mRNA-1 |
| chr1_4 | exon | 45658850 | 45659068 | 45658850 | ID=Msa0165230-mRNA-1:exon:13029;Parent=Msa0165230-mRNA-1 |
| chr1_4 | exon | 45659168 | 45659263 | 45659168 | ID=Msa0165230-mRNA-1:exon:13030;Parent=Msa0165230-mRNA-1 |
| chr1_4 | exon | 45661299 | 45661369 | 45661299 | ID=Msa0165230-mRNA-1:exon:13031;Parent=Msa0165230-mRNA-1 |
| chr1_4 | exon | 45661657 | 45661718 | 45661657 | ID=Msa0165230-mRNA-1:exon:13032;Parent=Msa0165230-mRNA-1 |
| chr1_4 | exon | 45661842 | 45661905 | 45661842 | ID=Msa0165230-mRNA-1:exon:13033;Parent=Msa0165230-mRNA-1 |
| chr1_4 | exon | 45661987 | 45662071 | 45661987 | ID=Msa0165230-mRNA-1:exon:13034;Parent=Msa0165230-mRNA-1 |
| chr1_4 | exon | 45663308 | 45663434 | 45663308 | ID=Msa0165230-mRNA-1:exon:13035;Parent=Msa0165230-mRNA-1 |
| chr1_4 | exon | 45663526 | 45663599 | 45663526 | ID=Msa0165230-mRNA-1:exon:13036;Parent=Msa0165230-mRNA-1 |
| chr1_4 | exon | 45663673 | 45663736 | 45663673 | ID=Msa0165230-mRNA-1:exon:13037;Parent=Msa0165230-mRNA-1 |
| chr1_4 | exon | 45663926 | 45664047 | 45663926 | ID=Msa0165230-mRNA-1:exon:13038;Parent=Msa0165230-mRNA-1 |
| chr1_4 | exon | 45664462 | 45665205 | 45664462 | ID=Msa0165230-mRNA-1:exon:13039;Parent=Msa0165230-mRNA-1 |
| chr1_4 | five_prime_UTR | 45657560 | 45658132 | 45657560 | ID=Msa0165230-mRNA-1:five_prime_utr;Parent=Msa0165230-mRNA-1 |
| chr1_4 | CDS | 45658133 | 45658208 | 45658133 | ID=Msa0165230-mRNA-1:cds;Parent=Msa0165230-mRNA-1 |
| chr1_4 | CDS | 45658315 | 45658355 | 45658315 | ID=Msa0165230-mRNA-1:cds;Parent=Msa0165230-mRNA-1 |
| chr1_4 | CDS | 45658850 | 45659068 | 45658850 | ID=Msa0165230-mRNA-1:cds;Parent=Msa0165230-mRNA-1 |
| chr1_4 | CDS | 45659168 | 45659263 | 45659168 | ID=Msa0165230-mRNA-1:cds;Parent=Msa0165230-mRNA-1 |
| chr1_4 | CDS | 45661299 | 45661369 | 45661299 | ID=Msa0165230-mRNA-1:cds;Parent=Msa0165230-mRNA-1 |
| chr1_4 | CDS | 45661657 | 45661718 | 45661657 | ID=Msa0165230-mRNA-1:cds;Parent=Msa0165230-mRNA-1 |
| chr1_4 | CDS | 45661842 | 45661905 | 45661842 | ID=Msa0165230-mRNA-1:cds;Parent=Msa0165230-mRNA-1 |
| chr1_4 | CDS | 45661987 | 45662071 | 45661987 | ID=Msa0165230-mRNA-1:cds;Parent=Msa0165230-mRNA-1 |
| chr1_4 | CDS | 45663308 | 45663434 | 45663308 | ID=Msa0165230-mRNA-1:cds;Parent=Msa0165230-mRNA-1 |
| chr1_4 | CDS | 45663526 | 45663599 | 45663526 | ID=Msa0165230-mRNA-1:cds;Parent=Msa0165230-mRNA-1 |
| chr1_4 | CDS | 45663673 | 45663736 | 45663673 | ID=Msa0165230-mRNA-1:cds;Parent=Msa0165230-mRNA-1 |
| chr1_4 | CDS | 45663926 | 45664047 | 45663926 | ID=Msa0165230-mRNA-1:cds;Parent=Msa0165230-mRNA-1 |
| chr1_4 | CDS | 45664462 | 45664707 | 45664462 | ID=Msa0165230-mRNA-1:cds;Parent=Msa0165230-mRNA-1 |
| chr1_4 | three_prime_UTR | 45664708 | 45665205 | 45664708 | ID=Msa0165230-mRNA-1:three_prime_utr;Parent=Msa0165230-mRNA-1 |
| Gene Sequence |
| Protein sequence |