Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165290 | XP_039683963.1 | 96.095 | 461 | 5 | 2 | 1 | 461 | 1 | 448 | 0.0 | 914 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165290 | sp|Q8LPJ1|CKL6_ARATH | 70.672 | 491 | 98 | 13 | 1 | 461 | 5 | 479 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165290 | A0A072VLK3 | 94.861 | 467 | 5 | 3 | 1 | 461 | 1 | 454 | 0.0 | 907 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092050 | Msa0165290 | 0.942808 | 3.723321e-102 | -8.615850e-47 |
| Msa0092140 | Msa0165290 | 0.940109 | 4.088292e-100 | -8.615850e-47 |
| Msa0122800 | Msa0165290 | 0.935169 | 1.292681e-96 | -8.615850e-47 |
| Msa0165230 | Msa0165290 | 0.945148 | 5.244460e-104 | -8.615850e-47 |
| Msa0165290 | Msa1415960 | 0.922953 | 5.023415e-89 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165290 | MtrunA17_Chr1g0183631 | 94.861 | 467 | 5 | 3 | 1 | 461 | 1 | 454 | 0.0 | 907 |
| Msa0165290 | MtrunA17_Chr7g0261501 | 75.941 | 478 | 83 | 9 | 1 | 461 | 1 | 463 | 0.0 | 714 |
| Msa0165290 | MtrunA17_Chr1g0187571 | 69.345 | 473 | 115 | 8 | 1 | 459 | 2 | 458 | 0.0 | 629 |
| Msa0165290 | MtrunA17_Chr1g0166821 | 68.288 | 473 | 114 | 8 | 1 | 459 | 2 | 452 | 0.0 | 619 |
| Msa0165290 | MtrunA17_Chr2g0329981 | 63.453 | 446 | 114 | 10 | 1 | 438 | 1 | 405 | 0.0 | 539 |
| Msa0165290 | MtrunA17_Chr4g0071031 | 69.705 | 373 | 87 | 6 | 1 | 360 | 1 | 360 | 0.0 | 533 |
| Msa0165290 | MtrunA17_Chr8g0342821 | 58.351 | 485 | 154 | 12 | 1 | 457 | 1 | 465 | 0.0 | 527 |
| Msa0165290 | MtrunA17_Chr2g0299661 | 53.799 | 487 | 176 | 8 | 1 | 460 | 1 | 465 | 1.24e-176 | 503 |
| Msa0165290 | MtrunA17_Chr6g0486611 | 73.668 | 319 | 71 | 2 | 1 | 319 | 1 | 306 | 2.61e-174 | 495 |
| Msa0165290 | MtrunA17_Chr1g0167261 | 64.675 | 385 | 90 | 6 | 1 | 383 | 2 | 342 | 1.04e-172 | 488 |
| Msa0165290 | MtrunA17_Chr8g0390211 | 73.955 | 311 | 68 | 2 | 1 | 311 | 1 | 298 | 3.40e-172 | 490 |
| Msa0165290 | MtrunA17_Chr3g0140071 | 54.147 | 434 | 170 | 6 | 1 | 430 | 1 | 409 | 2.53e-159 | 457 |
| Msa0165290 | MtrunA17_Chr1g0146151 | 67.532 | 308 | 87 | 2 | 1 | 308 | 1 | 295 | 2.99e-157 | 452 |
| Msa0165290 | MtrunA17_Chr7g0214531 | 36.667 | 300 | 162 | 7 | 5 | 290 | 31 | 316 | 1.15e-54 | 192 |
| Msa0165290 | MtrunA17_Chr1g0146301 | 36.111 | 288 | 166 | 6 | 5 | 286 | 118 | 393 | 6.58e-52 | 186 |
| Msa0165290 | MtrunA17_Chr3g0140431 | 35.764 | 288 | 167 | 6 | 5 | 286 | 32 | 307 | 6.80e-52 | 184 |
| Msa0165290 | MtrunA17_Chr1g0213321 | 34.812 | 293 | 172 | 6 | 5 | 290 | 113 | 393 | 5.85e-51 | 183 |
| Msa0165290 | MtrunA17_Chr7g0253211 | 34.708 | 291 | 169 | 5 | 9 | 290 | 324 | 602 | 3.45e-50 | 183 |
| Msa0165290 | MtrunA17_Chr8g0340491 | 34.708 | 291 | 163 | 7 | 9 | 286 | 128 | 404 | 2.56e-47 | 173 |
| Msa0165290 | MtrunA17_Chr5g0405421 | 25.424 | 236 | 140 | 7 | 8 | 232 | 98 | 308 | 4.48e-12 | 68.2 |
| Msa0165290 | MtrunA17_Chr4g0072831 | 31.481 | 162 | 74 | 7 | 7 | 166 | 8 | 134 | 2.42e-11 | 64.7 |
| Msa0165290 | MtrunA17_Chr3g0107051 | 28.139 | 231 | 133 | 8 | 5 | 227 | 17 | 222 | 3.15e-11 | 65.1 |
| Msa0165290 | MtrunA17_Chr7g0267751 | 28.070 | 228 | 131 | 10 | 9 | 228 | 135 | 337 | 3.24e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165290 | AT4G28540.1 | 70.672 | 491 | 98 | 13 | 1 | 461 | 5 | 479 | 0.0 | 667 |
| Msa0165290 | AT4G14340.1 | 68.884 | 466 | 116 | 9 | 1 | 459 | 7 | 450 | 0.0 | 629 |
| Msa0165290 | AT3G23340.1 | 69.913 | 462 | 110 | 9 | 1 | 459 | 1 | 436 | 0.0 | 629 |
| Msa0165290 | AT1G03930.1 | 66.530 | 487 | 121 | 10 | 1 | 461 | 1 | 471 | 0.0 | 613 |
| Msa0165290 | AT5G43320.1 | 65.574 | 488 | 125 | 9 | 1 | 459 | 1 | 474 | 0.0 | 613 |
| Msa0165290 | AT3G23340.2 | 67.316 | 462 | 108 | 10 | 1 | 459 | 1 | 422 | 0.0 | 595 |
| Msa0165290 | AT1G04440.1 | 64.361 | 477 | 137 | 10 | 1 | 459 | 1 | 462 | 0.0 | 586 |
| Msa0165290 | AT5G44100.1 | 79.063 | 363 | 58 | 4 | 1 | 359 | 1 | 349 | 0.0 | 584 |
| Msa0165290 | AT5G44100.2 | 79.063 | 363 | 58 | 4 | 1 | 359 | 1 | 349 | 0.0 | 584 |
| Msa0165290 | AT4G14340.2 | 80.059 | 341 | 54 | 3 | 1 | 341 | 7 | 333 | 0.0 | 564 |
| Msa0165290 | AT5G43320.2 | 77.971 | 345 | 60 | 3 | 1 | 342 | 1 | 332 | 0.0 | 552 |
| Msa0165290 | AT5G43320.3 | 77.971 | 345 | 60 | 3 | 1 | 342 | 1 | 332 | 0.0 | 552 |
| Msa0165290 | AT1G72710.1 | 72.303 | 343 | 79 | 4 | 1 | 341 | 1 | 329 | 0.0 | 523 |
| Msa0165290 | AT4G26100.1 | 77.492 | 311 | 57 | 2 | 1 | 311 | 1 | 298 | 0.0 | 523 |
| Msa0165290 | AT5G57015.1 | 77.170 | 311 | 58 | 2 | 1 | 311 | 1 | 298 | 0.0 | 516 |
| Msa0165290 | AT2G19470.1 | 70.760 | 342 | 84 | 5 | 1 | 339 | 1 | 329 | 1.60e-180 | 512 |
| Msa0165290 | AT4G28880.3 | 68.373 | 332 | 92 | 2 | 1 | 332 | 1 | 319 | 5.53e-171 | 487 |
| Msa0165290 | AT4G28880.2 | 68.373 | 332 | 92 | 2 | 1 | 332 | 1 | 319 | 5.53e-171 | 487 |
| Msa0165290 | AT4G28880.1 | 68.373 | 332 | 92 | 2 | 1 | 332 | 1 | 319 | 5.53e-171 | 487 |
| Msa0165290 | AT4G28880.4 | 68.373 | 332 | 92 | 2 | 1 | 332 | 1 | 319 | 5.53e-171 | 487 |
| Msa0165290 | AT4G28860.2 | 67.771 | 332 | 94 | 2 | 1 | 332 | 1 | 319 | 8.34e-170 | 482 |
| Msa0165290 | AT4G28860.1 | 71.704 | 311 | 75 | 2 | 1 | 311 | 1 | 298 | 2.07e-169 | 483 |
| Msa0165290 | AT4G08800.1 | 63.430 | 309 | 68 | 4 | 1 | 309 | 1 | 264 | 6.35e-140 | 403 |
| Msa0165290 | AT2G25760.2 | 37.457 | 291 | 158 | 5 | 9 | 286 | 107 | 386 | 4.75e-56 | 197 |
| Msa0165290 | AT2G25760.1 | 37.113 | 291 | 156 | 6 | 9 | 286 | 107 | 383 | 2.29e-53 | 190 |
| Msa0165290 | AT3G13670.1 | 33.893 | 298 | 173 | 6 | 5 | 290 | 131 | 416 | 1.52e-51 | 185 |
| Msa0165290 | AT5G18190.2 | 33.677 | 291 | 172 | 6 | 9 | 290 | 130 | 408 | 2.43e-49 | 179 |
| Msa0165290 | AT5G18190.1 | 33.677 | 291 | 172 | 6 | 9 | 290 | 130 | 408 | 2.43e-49 | 179 |
| Msa0165290 | AT3G03940.1 | 33.677 | 291 | 172 | 5 | 9 | 290 | 140 | 418 | 4.71e-49 | 178 |
| Msa0165290 | AT3G06030.1 | 24.889 | 225 | 145 | 5 | 8 | 226 | 67 | 273 | 2.01e-11 | 66.6 |
| Msa0165290 | AT3G50530.1 | 27.273 | 242 | 136 | 9 | 5 | 232 | 144 | 359 | 2.42e-11 | 66.2 |
Find 173 sgRNAs with CRISPR-Local
Find 497 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTTCATTTCTAAATTT+TGG | 0.111875 | 1_4:-45721075 | Msa0165290:three_prime_UTR |
| TTTAAACTTGGAAGGAAAAT+TGG | 0.141980 | 1_4:-45727638 | Msa0165290:CDS |
| GTTCTTGATATTGATTATTC+TGG | 0.171244 | 1_4:-45727995 | Msa0165290:five_prime_UTR |
| AATCAAGATTAAATGCAAAT+TGG | 0.204360 | 1_4:+45727857 | None:intergenic |
| TAGAATTTGCGCGGTTCCTC+TGG | 0.208716 | 1_4:+45721821 | None:intergenic |
| CAAAAGTAGTTTCACAAGTT+TGG | 0.231854 | 1_4:+45728134 | None:intergenic |
| GAATGGTCACCTGAGGAATT+TGG | 0.252408 | 1_4:+45721274 | None:intergenic |
| TTGTTGGGTTTGGTGAATTT+TGG | 0.279061 | 1_4:-45727818 | Msa0165290:five_prime_UTR |
| CCGACTTCAAAGTGAATTTC+CGG | 0.284081 | 1_4:+45726777 | None:intergenic |
| TGGGATTTCAAGAAGCCTTA+TGG | 0.303360 | 1_4:-45721046 | Msa0165290:three_prime_UTR |
| ATCAAGATTAAATGCAAATT+GGG | 0.306208 | 1_4:+45727858 | None:intergenic |
| ACATACCTTCTCGAATAAAA+AGG | 0.309439 | 1_4:+45722381 | None:intergenic |
| CTCTTTAAATATGAATAATC+TGG | 0.309704 | 1_4:+45722416 | None:intergenic |
| CAAGTCATAATTACCTCTAT+TGG | 0.319914 | 1_4:+45723735 | None:intergenic |
| AAAATTGGGAGTGGTTCTTT+TGG | 0.322856 | 1_4:-45727623 | Msa0165290:CDS |
| ATTTAAAGCAACGAATGATA+TGG | 0.325797 | 1_4:-45720708 | Msa0165290:three_prime_UTR |
| TTCAGTTGGGAGAGAGATTC+GGG | 0.329420 | 1_4:-45721878 | Msa0165290:intron |
| TATTCTGGGATGATTGGTTT+TGG | 0.336900 | 1_4:-45727980 | Msa0165290:five_prime_UTR |
| CTGTTGAAAATCAATCAATT+TGG | 0.339043 | 1_4:-45727757 | Msa0165290:five_prime_UTR |
| AAACAAAAGATTCAAGTTCA+TGG | 0.356941 | 1_4:-45721019 | Msa0165290:three_prime_UTR |
| CAACACAATTCAACTCGATA+TGG | 0.357353 | 1_4:-45721331 | Msa0165290:CDS |
| CATAGCGTGCCGTGCCTGTA+AGG | 0.359631 | 1_4:+45724129 | None:intergenic |
| AATTCCTCAGGTGACCATTC+TGG | 0.359748 | 1_4:-45721271 | Msa0165290:CDS |
| ATTTATTCAATTATTGTAAC+CGG | 0.360177 | 1_4:-45726796 | Msa0165290:CDS |
| GTGCTAATGTATTTCTTAAG+AGG | 0.362458 | 1_4:-45723918 | Msa0165290:CDS |
| TTAAACTTGGAAGGAAAATT+GGG | 0.363410 | 1_4:-45727637 | Msa0165290:CDS |
| TCCAGCCCTCAGTCCTTGCC+AGG | 0.368539 | 1_4:+45723806 | None:intergenic |
| TTCTTGATATTGATTATTCT+GGG | 0.370586 | 1_4:-45727994 | Msa0165290:five_prime_UTR |
| AGGGAAAATAAGAACCTTAC+AGG | 0.372840 | 1_4:-45724143 | Msa0165290:CDS |
| TTTCAGTTGGGAGAGAGATT+CGG | 0.379707 | 1_4:-45721879 | Msa0165290:intron |
| ATTGATTATTCTGGGATGAT+TGG | 0.385224 | 1_4:-45727986 | Msa0165290:five_prime_UTR |
| GTCATGGTCATCGACCTTCT+TGG | 0.387600 | 1_4:-45726833 | Msa0165290:CDS |
| CGACCTTCTTGGACCCAGTC+TGG | 0.390528 | 1_4:-45726822 | Msa0165290:CDS |
| TTTGAATTTGTCCACAATCA+AGG | 0.390569 | 1_4:-45727716 | Msa0165290:five_prime_UTR |
| TTGGGGTGAAGGAATGTAGT+TGG | 0.395154 | 1_4:-45727952 | Msa0165290:five_prime_UTR |
| ATGATTCTTCAAGGAGGAAC+TGG | 0.404829 | 1_4:-45726899 | Msa0165290:CDS |
| ACCTCAACGAACGGCAATAG+TGG | 0.405356 | 1_4:+45722450 | None:intergenic |
| CCTCAACTCCAAACCATTTG+AGG | 0.409202 | 1_4:+45726867 | None:intergenic |
| CGGAGGAAGTGGGTCTTGTT+TGG | 0.413082 | 1_4:+45728164 | None:intergenic |
| GCTTTGAGCTCCTCACTATC+AGG | 0.414666 | 1_4:-45721123 | Msa0165290:CDS |
| GAGATTCGGGAGAAATTATC+TGG | 0.415618 | 1_4:-45721865 | Msa0165290:CDS |
| CTCAAATGGTTTGGAGTTGA+GGG | 0.423483 | 1_4:-45726866 | Msa0165290:CDS |
| TCAGCTGTTAATATACAAAC+TGG | 0.426788 | 1_4:-45727483 | Msa0165290:intron |
| GCAAGTGTCAACACCCATCT+TGG | 0.433561 | 1_4:-45724107 | Msa0165290:CDS |
| ATAGGGATCTTCAGACTCAT+AGG | 0.434481 | 1_4:-45724466 | Msa0165290:CDS |
| TTTATCATGGATCATGTGAT+TGG | 0.443086 | 1_4:-45727668 | Msa0165290:exon |
| CCTCAAATGGTTTGGAGTTG+AGG | 0.448526 | 1_4:-45726867 | Msa0165290:CDS |
| TTGCCGTTCGTTGAGGTTTG+AGG | 0.451388 | 1_4:-45722444 | Msa0165290:CDS |
| TGGATATGCAATGTTATTTG+TGG | 0.454735 | 1_4:-45720801 | Msa0165290:three_prime_UTR |
| ATATCGAGTTGAATTGTGTT+GGG | 0.458129 | 1_4:+45721333 | None:intergenic |
| ACAAAGTCGAAGGGATGATC+TGG | 0.458546 | 1_4:-45723955 | Msa0165290:CDS |
| TTTCGCAAGGCCGAAGTCAA+TGG | 0.458863 | 1_4:+45724493 | None:intergenic |
| ATTGAATAAATCTTCCAGAC+TGG | 0.465309 | 1_4:+45726808 | None:intergenic |
| CATAAAGCACAAAAGATTCC+AGG | 0.469567 | 1_4:-45722084 | Msa0165290:intron |
| AAACTGTATATGATTCTTCA+AGG | 0.471640 | 1_4:-45726908 | Msa0165290:CDS |
| GTGGAAAGTTTAAACTTGGA+AGG | 0.472881 | 1_4:-45727646 | Msa0165290:CDS |
| CTCCAAACCATTTGAGGTGG+GGG | 0.473526 | 1_4:+45726873 | None:intergenic |
| TTGGAGATGAACGGAGGAAG+TGG | 0.485546 | 1_4:+45728153 | None:intergenic |
| GGCAGGATGGCCACAAGTGG+GGG | 0.486821 | 1_4:-45721250 | Msa0165290:CDS |
| ATAGTGAAGCTGTGGATGCC+TGG | 0.493685 | 1_4:+45726937 | None:intergenic |
| TTGAATTTGTCCACAATCAA+GGG | 0.497388 | 1_4:-45727715 | Msa0165290:five_prime_UTR |
| TCTTCCCTGGCAAGGACTGA+GGG | 0.499281 | 1_4:-45723811 | Msa0165290:CDS |
| AGAAGGTATCTGTGGTGTGC+TGG | 0.499832 | 1_4:+45728095 | None:intergenic |
| TTGTGGCCATCCTGCCAGAA+TGG | 0.501550 | 1_4:+45721257 | None:intergenic |
| CCCTGGCAAGGACTGAGGGC+TGG | 0.502421 | 1_4:-45723807 | Msa0165290:CDS |
| GTCAACACCCATCTTGGAAT+CGG | 0.505171 | 1_4:-45724101 | Msa0165290:intron |
| ATCATCATAAGTCCTATGTC+TGG | 0.505727 | 1_4:+45721777 | None:intergenic |
| CATATCGAGTTGAATTGTGT+TGG | 0.505789 | 1_4:+45721332 | None:intergenic |
| ATTGGTGGAAAGTTTAAACT+TGG | 0.508093 | 1_4:-45727650 | Msa0165290:CDS |
| TTGAATTCAGCCCTTGATTG+TGG | 0.510798 | 1_4:+45727705 | None:intergenic |
| AGAGGAGGTGGCTGTTAAGC+TGG | 0.511655 | 1_4:-45727460 | Msa0165290:intron |
| CAGGTGTATGCCATTGACTT+CGG | 0.512497 | 1_4:-45724503 | Msa0165290:CDS |
| AGAATTTGCGCGGTTCCTCT+GGG | 0.513807 | 1_4:+45721822 | None:intergenic |
| CTGGCAGGATGGCCACAAGT+GGG | 0.513957 | 1_4:-45721252 | Msa0165290:CDS |
| AGGGATGATCTGGAATCTCT+TGG | 0.515030 | 1_4:-45723945 | Msa0165290:CDS |
| GAAGGTATCAACTCCAATAG+AGG | 0.515426 | 1_4:-45723748 | Msa0165290:intron |
| GTCTTCCCTGGCAAGGACTG+AGG | 0.516641 | 1_4:-45723812 | Msa0165290:CDS |
| TCAATATCAAGAACAACAAA+GGG | 0.519549 | 1_4:+45728004 | None:intergenic |
| ATCAATATCAAGAACAACAA+AGG | 0.520586 | 1_4:+45728003 | None:intergenic |
| AATTGTCTGGCTTTATGTCT+CGG | 0.521040 | 1_4:+45726591 | None:intergenic |
| ATCACTTACCGATTCCAAGA+TGG | 0.522339 | 1_4:+45724093 | None:intergenic |
| TCCACTATTGCCGTTCGTTG+AGG | 0.522705 | 1_4:-45722451 | Msa0165290:CDS |
| CAGAGTAGTGGCAGCTCTAG+AGG | 0.523385 | 1_4:-45722226 | Msa0165290:CDS |
| AGTAAGTCTGTCTGTCAAGT+TGG | 0.524064 | 1_4:-45726732 | Msa0165290:CDS |
| TCACTTACCGATTCCAAGAT+GGG | 0.528445 | 1_4:+45724094 | None:intergenic |
| GGGCTGAATTCAATATTTGA+AGG | 0.528537 | 1_4:-45727695 | Msa0165290:five_prime_UTR |
| AGGCCCATCAGAAAATTGTC+TGG | 0.529417 | 1_4:+45726578 | None:intergenic |
| AACTCCAAACCATTTGAGGT+GGG | 0.533255 | 1_4:+45726871 | None:intergenic |
| TGGCAGGATGGCCACAAGTG+GGG | 0.534769 | 1_4:-45721251 | Msa0165290:CDS |
| CTCTATGTGCGCCAGATGGA+CGG | 0.535759 | 1_4:+45721227 | None:intergenic |
| CTTGATTTGCTTTACGTCCG+AGG | 0.536022 | 1_4:+45726558 | None:intergenic |
| TTGTAACGACAGCATGGCAC+TGG | 0.538838 | 1_4:-45722138 | Msa0165290:intron |
| TCAAGATTAAATGCAAATTG+GGG | 0.540099 | 1_4:+45727859 | None:intergenic |
| ATCATGGATCATGTGATTGG+TGG | 0.540398 | 1_4:-45727665 | Msa0165290:CDS |
| TTGAAACATCCTCATGAATG+AGG | 0.540842 | 1_4:+45727905 | None:intergenic |
| TATACAAACTGGAGAGGAGG+TGG | 0.543406 | 1_4:-45727472 | Msa0165290:CDS |
| AATCTTCTGAAGCAATCTGA+GGG | 0.543803 | 1_4:+45720936 | None:intergenic |
| TTGAATAAATCTTCCAGACT+GGG | 0.547330 | 1_4:+45726809 | None:intergenic |
| TGAATAATTCCTCATTCATG+AGG | 0.551215 | 1_4:-45727914 | Msa0165290:five_prime_UTR |
| TAATGTATTTCTTAAGAGGA+AGG | 0.552033 | 1_4:-45723914 | Msa0165290:intron |
| TAGTGGCAGCTCTAGAGGAC+GGG | 0.553447 | 1_4:-45722221 | Msa0165290:intron |
| TCTGGCAGGATGGCCACAAG+TGG | 0.554722 | 1_4:-45721253 | Msa0165290:CDS |
| GTAGTGGCAGCTCTAGAGGA+CGG | 0.557752 | 1_4:-45722222 | Msa0165290:CDS |
| GTTGAATACATGCATTCAAG+AGG | 0.558652 | 1_4:-45726623 | Msa0165290:CDS |
| TCATCAAAGCCAAATTCCTC+AGG | 0.559975 | 1_4:-45721283 | Msa0165290:CDS |
| GAATAAGGTAGGAAAAGAGA+AGG | 0.561006 | 1_4:+45728078 | None:intergenic |
| ATAAGGCTTCTTGAAATCCC+AGG | 0.563366 | 1_4:+45721048 | None:intergenic |
| CAACTCCAAACCATTTGAGG+TGG | 0.572196 | 1_4:+45726870 | None:intergenic |
| TCCAGGAATCTGTGAAGACC+AGG | 0.574379 | 1_4:-45726955 | Msa0165290:intron |
| CCTCAGGTGACCATTCTGGC+AGG | 0.574601 | 1_4:-45721267 | Msa0165290:CDS |
| TTCACAAGTTTGGAGATGAA+CGG | 0.574856 | 1_4:+45728144 | None:intergenic |
| AAATCTTCTGAAGCAATCTG+AGG | 0.574956 | 1_4:+45720935 | None:intergenic |
| TTGCTATGAATATGGTAACT+CGG | 0.576171 | 1_4:+45720667 | None:intergenic |
| AGGTGACCATTCTGGCAGGA+TGG | 0.577708 | 1_4:-45721263 | Msa0165290:CDS |
| ACTATCAGGAAGTAATCTCA+AGG | 0.579172 | 1_4:-45721109 | Msa0165290:exon |
| TGGTGTGTTCACCGTGATGA+GGG | 0.579905 | 1_4:+45721797 | None:intergenic |
| CTCATAGGCACATACCGTAC+AGG | 0.580718 | 1_4:-45724451 | Msa0165290:intron |
| AGACAGACTTACTAATTGAT+CGG | 0.581760 | 1_4:+45726742 | None:intergenic |
| CTTGGAAGGAAAATTGGGAG+TGG | 0.582542 | 1_4:-45727632 | Msa0165290:CDS |
| GGGGATCTAGAAATGATGTC+GGG | 0.584750 | 1_4:+45720956 | None:intergenic |
| CTTCCAGACTGGGTCCAAGA+AGG | 0.585280 | 1_4:+45726819 | None:intergenic |
| GATCACAAAACCAACCTGTA+CGG | 0.586380 | 1_4:+45724437 | None:intergenic |
| GGACAAATTCAAACAGAGGA+AGG | 0.587793 | 1_4:+45727726 | None:intergenic |
| GAGATTACTTCCTGATAGTG+AGG | 0.590566 | 1_4:+45721113 | None:intergenic |
| CCAGCCCTCAGTCCTTGCCA+GGG | 0.593406 | 1_4:+45723807 | None:intergenic |
| ACTCCAAACCATTTGAGGTG+GGG | 0.595250 | 1_4:+45726872 | None:intergenic |
| TGAACTCTATGTGCGCCAGA+TGG | 0.596034 | 1_4:+45721223 | None:intergenic |
| ATTTGGCTTTGATGATACCA+TGG | 0.597247 | 1_4:+45721291 | None:intergenic |
| TGGTGGCAGAACAAAGTCGA+AGG | 0.597531 | 1_4:-45723965 | Msa0165290:intron |
| GCTTGTTTCGTATCATACAC+AGG | 0.597643 | 1_4:+45721199 | None:intergenic |
| ACGGTGAACACACCAGACAT+AGG | 0.599179 | 1_4:-45721789 | Msa0165290:CDS |
| GCTCGCAATGGGTCTATGAG+AGG | 0.601655 | 1_4:-45721169 | Msa0165290:CDS |
| AGGGGATCTAGAAATGATGT+CGG | 0.602938 | 1_4:+45720955 | None:intergenic |
| CCGGAAATTCACTTTGAAGT+CGG | 0.603149 | 1_4:-45726777 | Msa0165290:CDS |
| CTGGTGTGTTCACCGTGATG+AGG | 0.605762 | 1_4:+45721796 | None:intergenic |
| AAATAATAATAATTCAGCAA+TGG | 0.606102 | 1_4:+45720621 | None:intergenic |
| AACGAATGATATGGTGCTGT+AGG | 0.611429 | 1_4:-45720699 | Msa0165290:three_prime_UTR |
| AGGAGCTCAAAGCTCCTCAG+AGG | 0.611695 | 1_4:+45721133 | None:intergenic |
| AGGAAAAGAGAAGGTATCTG+TGG | 0.614878 | 1_4:+45728087 | None:intergenic |
| ACATAGGACTTATGATGATG+TGG | 0.615199 | 1_4:-45721773 | Msa0165290:intron |
| ACGACAGCATGGCACTGGCA+AGG | 0.615258 | 1_4:-45722133 | Msa0165290:intron |
| ATATTAATGAATTACCATTG+AGG | 0.618281 | 1_4:-45720996 | Msa0165290:three_prime_UTR |
| TTGAAGTATCCACAGAGTAG+TGG | 0.619683 | 1_4:-45722238 | Msa0165290:CDS |
| TTTGACTCATAGTGAAGCTG+TGG | 0.620621 | 1_4:+45726929 | None:intergenic |
| CGATAAAATCAGTGAGACGA+AGG | 0.621170 | 1_4:-45723766 | Msa0165290:CDS |
| TGTCCTCAAACCTCAACGAA+CGG | 0.628598 | 1_4:+45722441 | None:intergenic |
| CTATCAGGAAGTAATCTCAA+GGG | 0.630386 | 1_4:-45721108 | Msa0165290:exon |
| TGGAGATGAACGGAGGAAGT+GGG | 0.631012 | 1_4:+45728154 | None:intergenic |
| TCATGCCATTGTGACCTCAA+TGG | 0.631482 | 1_4:+45720982 | None:intergenic |
| TGAGGGAGAGTACAATGTCA+TGG | 0.631924 | 1_4:-45726849 | Msa0165290:CDS |
| AAATAAGAACCTTACAGGCA+CGG | 0.632067 | 1_4:-45724138 | Msa0165290:CDS |
| GATGAGGGCTAGAATTTGCG+CGG | 0.634849 | 1_4:+45721812 | None:intergenic |
| TAATATACAAACTGGAGAGG+AGG | 0.635465 | 1_4:-45727475 | Msa0165290:CDS |
| TGTGGTGTGCTGGATGAAAG+AGG | 0.645151 | 1_4:+45728105 | None:intergenic |
| AAGCAGTTCAAGAAGAGCCA+TGG | 0.646616 | 1_4:-45721308 | Msa0165290:CDS |
| ACAGTGAATGTAGTTTAACA+AGG | 0.650280 | 1_4:-45720758 | Msa0165290:three_prime_UTR |
| CTAGAGCTGCCACTACTCTG+TGG | 0.650464 | 1_4:+45722229 | None:intergenic |
| TTGTGGACAAATTCAAACAG+AGG | 0.650537 | 1_4:+45727722 | None:intergenic |
| AAGTATGATACAAACTCAGA+GGG | 0.655305 | 1_4:+45722473 | None:intergenic |
| TGTTAATATACAAACTGGAG+AGG | 0.660638 | 1_4:-45727478 | Msa0165290:CDS |
| GAAGTATGATACAAACTCAG+AGG | 0.660966 | 1_4:+45722472 | None:intergenic |
| GGTGGCAGAACAAAGTCGAA+GGG | 0.669079 | 1_4:-45723964 | Msa0165290:intron |
| TTGTTGAAGCATTCACCCAG+AGG | 0.669158 | 1_4:-45721837 | Msa0165290:CDS |
| CAAGATTAAATGCAAATTGG+GGG | 0.673478 | 1_4:+45727860 | None:intergenic |
| AATTACCATTGAGGTCACAA+TGG | 0.674062 | 1_4:-45720987 | Msa0165290:three_prime_UTR |
| CCTGCCAGAATGGTCACCTG+AGG | 0.679602 | 1_4:+45721267 | None:intergenic |
| GCAAATTCTAGCCCTCATCA+CGG | 0.684087 | 1_4:-45721808 | Msa0165290:CDS |
| ACAAGTTTGGAGATGAACGG+AGG | 0.694451 | 1_4:+45728147 | None:intergenic |
| AGCTCCTCAGAGGATCATCA+CGG | 0.696325 | 1_4:+45721143 | None:intergenic |
| ATCTTCTGAAGCAATCTGAG+GGG | 0.701243 | 1_4:+45720937 | None:intergenic |
| GCCACCGTGATGATCCTCTG+AGG | 0.725239 | 1_4:-45721147 | Msa0165290:CDS |
| CTGTATATGATTCTTCAAGG+AGG | 0.728537 | 1_4:-45726905 | Msa0165290:CDS |
| TCCTCAGAGGATCATCACGG+TGG | 0.751052 | 1_4:+45721146 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATTAAAAACAAAAAAAAA+GGG | + | chr1_4:45721289-45721308 | None:intergenic | 10.0% |
| !! | TGAATTAAAAACAAAAAAAA+AGG | + | chr1_4:45721290-45721309 | None:intergenic | 10.0% |
| !!! | TTGTTTTTAATTCATTTATT+TGG | - | chr1_4:45721296-45721315 | Msa0165290:CDS | 10.0% |
| !!! | TGTTTTTAATTCATTTATTT+GGG | - | chr1_4:45721297-45721316 | Msa0165290:CDS | 10.0% |
| !! | TAATCATATATAGATAATTT+AGG | + | chr1_4:45722434-45722453 | None:intergenic | 10.0% |
| !! | ATTAAATATAAGAAAATCTT+GGG | - | chr1_4:45722692-45722711 | Msa0165290:intron | 10.0% |
| !! | CCATAAAATAAAATAAAAAA+TGG | + | chr1_4:45724207-45724226 | None:intergenic | 10.0% |
| !!! | CCATTTTTTATTTTATTTTA+TGG | - | chr1_4:45724204-45724223 | Msa0165290:intron | 10.0% |
| !! | AAATGAATTATTACATTATT+AGG | - | chr1_4:45724831-45724850 | Msa0165290:intron | 10.0% |
| !!! | TACTTTTCATTTTTAAATTA+CGG | - | chr1_4:45725381-45725400 | Msa0165290:intron | 10.0% |
| !!! | TTTATGAAAATAACATTTTA+GGG | + | chr1_4:45726257-45726276 | None:intergenic | 10.0% |
| !!! | TTTTATGAAAATAACATTTT+AGG | + | chr1_4:45726258-45726277 | None:intergenic | 10.0% |
| !!! | TTTTAGATTTGTAAATAAAA+CGG | + | chr1_4:45727317-45727336 | None:intergenic | 10.0% |
| !!! | TTTTATGAATTTCTAGAATT+TGG | - | chr1_4:45721473-45721492 | Msa0165290:intron | 15.0% |
| !!! | TTGATTTTTTTTTTTCATGT+TGG | - | chr1_4:45721496-45721515 | Msa0165290:intron | 15.0% |
| !!! | ATGTTTTAAATGTTAACTTT+TGG | - | chr1_4:45721625-45721644 | Msa0165290:intron | 15.0% |
| !! | ATTTATTCAATTATTGTAAC+CGG | - | chr1_4:45722059-45722078 | Msa0165290:intron | 15.0% |
| !! | TAATATGGTTCTTTATATAA+TGG | - | chr1_4:45722157-45722176 | Msa0165290:intron | 15.0% |
| !! | AAAACATAATAGCTTAAAAT+GGG | + | chr1_4:45722518-45722537 | None:intergenic | 15.0% |
| !! | AAAAACATAATAGCTTAAAA+TGG | + | chr1_4:45722519-45722538 | None:intergenic | 15.0% |
| !! | GATTAAATATAAGAAAATCT+TGG | - | chr1_4:45722691-45722710 | Msa0165290:intron | 15.0% |
| !! | TATTATATTGATATTGATAG+CGG | - | chr1_4:45723281-45723300 | Msa0165290:intron | 15.0% |
| !!! | TCATAGTAATATTTACTTTT+TGG | - | chr1_4:45723738-45723757 | Msa0165290:intron | 15.0% |
| !!! | CATAGTAATATTTACTTTTT+GGG | - | chr1_4:45723739-45723758 | Msa0165290:intron | 15.0% |
| !!! | TTTTATTTTATGGATGTTAT+AGG | - | chr1_4:45724214-45724233 | Msa0165290:intron | 15.0% |
| !! | CTAAAATATTATCTACATTT+AGG | + | chr1_4:45724602-45724621 | None:intergenic | 15.0% |
| !!! | ATATTTTTCACTAATCAATT+TGG | + | chr1_4:45725730-45725749 | None:intergenic | 15.0% |
| !! | AAAATGACTAATAAAAACTA+AGG | - | chr1_4:45725793-45725812 | Msa0165290:intron | 15.0% |
| !! | GATTATGTAATGTTATATTA+TGG | + | chr1_4:45725885-45725904 | None:intergenic | 15.0% |
| !! | ATCATCATACATTAATTATT+AGG | - | chr1_4:45725902-45725921 | Msa0165290:intron | 15.0% |
| !!! | TACTTTTCTTTTTCAAATTA+CGG | + | chr1_4:45726189-45726208 | None:intergenic | 15.0% |
| !!! | ATTTTTAATTGCTATGAATA+TGG | + | chr1_4:45728199-45728218 | None:intergenic | 15.0% |
| !! | AAATAATAATAATTCAGCAA+TGG | + | chr1_4:45728237-45728256 | None:intergenic | 15.0% |
| !!! | TTTTTTGGAAAAACAGAATA+AGG | + | chr1_4:45720795-45720814 | None:intergenic | 20.0% |
| !!! | TTCTTGATATTGATTATTCT+GGG | - | chr1_4:45720861-45720880 | Msa0165290:three_prime_UTR | 20.0% |
| !! | ATCAAGATTAAATGCAAATT+GGG | + | chr1_4:45721000-45721019 | None:intergenic | 20.0% |
| !! | AATCAAGATTAAATGCAAAT+TGG | + | chr1_4:45721001-45721020 | None:intergenic | 20.0% |
| !!! | TTAGATTGTGAATTTTTGTT+GGG | - | chr1_4:45721022-45721041 | Msa0165290:three_prime_UTR | 20.0% |
| !! | GATATTATCTGAACTATTTA+GGG | - | chr1_4:45721537-45721556 | Msa0165290:intron | 20.0% |
| !!! | TTTTTTTTGTTATCAGTTAG+TGG | - | chr1_4:45721811-45721830 | Msa0165290:CDS | 20.0% |
| !!! | AAGCTATTATGTTTTTTCTT+TGG | - | chr1_4:45722523-45722542 | Msa0165290:intron | 20.0% |
| !!! | ACAAGATTCTATCATTTTTT+CGG | + | chr1_4:45723110-45723129 | None:intergenic | 20.0% |
| !!! | TCTTTATTTATATCAAAGAC+AGG | + | chr1_4:45723505-45723524 | None:intergenic | 20.0% |
| !!! | TACAAAATGAAGTCTTTTAA+AGG | + | chr1_4:45724085-45724104 | None:intergenic | 20.0% |
| !! | AGCAATTATTAAGCAATATA+AGG | + | chr1_4:45724498-45724517 | None:intergenic | 20.0% |
| !! | AACTAAAACAATATCAAACT+TGG | - | chr1_4:45724630-45724649 | Msa0165290:intron | 20.0% |
| !! | CAAAATATATTGAGATCAAT+GGG | + | chr1_4:45724667-45724686 | None:intergenic | 20.0% |
| !! | ACAAAATATATTGAGATCAA+TGG | + | chr1_4:45724668-45724687 | None:intergenic | 20.0% |
| !!! | ATATTTTTCTTCTTTGCTTA+GGG | - | chr1_4:45724693-45724712 | Msa0165290:intron | 20.0% |
| !!! | GTTTCTTGTTTATTAGAAAT+TGG | - | chr1_4:45725227-45725246 | Msa0165290:intron | 20.0% |
| !!! | ATCCAAATTATTTAAGATGA+TGG | + | chr1_4:45725540-45725559 | None:intergenic | 20.0% |
| !!! | TAAAAACTAAGGTTTGTTTT+TGG | - | chr1_4:45725804-45725823 | Msa0165290:intron | 20.0% |
| !!! | TGAAGGTTTTGAATTAAAAT+GGG | + | chr1_4:45725855-45725874 | None:intergenic | 20.0% |
| !!! | TTGAAGGTTTTGAATTAAAA+TGG | + | chr1_4:45725856-45725875 | None:intergenic | 20.0% |
| !! | TATATTATGGAAAAACTTGA+AGG | + | chr1_4:45725872-45725891 | None:intergenic | 20.0% |
| !!! | TTACGTGCTTTTATAAAAAT+AGG | - | chr1_4:45726342-45726361 | Msa0165290:intron | 20.0% |
| !! | CTCTTTAAATATGAATAATC+TGG | + | chr1_4:45726442-45726461 | None:intergenic | 20.0% |
| !!! | TTGTTGTTTTACATTTTTGT+TGG | - | chr1_4:45726678-45726697 | Msa0165290:intron | 20.0% |
| !! | TTATGTGAAAAAACATGAAA+TGG | + | chr1_4:45727207-45727226 | None:intergenic | 20.0% |
| !! | ATATTTACAAATGGTAAACA+AGG | + | chr1_4:45727254-45727273 | None:intergenic | 20.0% |
| !! | CTAGTACAAATATTTACAAA+TGG | + | chr1_4:45727263-45727282 | None:intergenic | 20.0% |
| !!! | TGTTCTTCATTTCTAAATTT+TGG | - | chr1_4:45727780-45727799 | Msa0165290:five_prime_UTR | 20.0% |
| !! | ATATTAATGAATTACCATTG+AGG | - | chr1_4:45727859-45727878 | Msa0165290:five_prime_UTR | 20.0% |
| ! | TCAATATCAAGAACAACAAA+GGG | + | chr1_4:45720854-45720873 | None:intergenic | 25.0% |
| ! | ATCAATATCAAGAACAACAA+AGG | + | chr1_4:45720855-45720874 | None:intergenic | 25.0% |
| !! | GTTCTTGATATTGATTATTC+TGG | - | chr1_4:45720860-45720879 | Msa0165290:three_prime_UTR | 25.0% |
| ! | TCAAGATTAAATGCAAATTG+GGG | + | chr1_4:45720999-45721018 | None:intergenic | 25.0% |
| !! | GTTAGATTGTGAATTTTTGT+TGG | - | chr1_4:45721021-45721040 | Msa0165290:three_prime_UTR | 25.0% |
| !!! | GTTAGGATTTTTATTGATTC+AGG | - | chr1_4:45721066-45721085 | Msa0165290:three_prime_UTR | 25.0% |
| ! | CTGTTGAAAATCAATCAATT+TGG | - | chr1_4:45721098-45721117 | Msa0165290:exon | 25.0% |
| !! | ATTTGAAGGTGATTTTATCA+TGG | - | chr1_4:45721174-45721193 | Msa0165290:CDS | 25.0% |
| ! | TTTAAACTTGGAAGGAAAAT+TGG | - | chr1_4:45721217-45721236 | Msa0165290:CDS | 25.0% |
| ! | TTAAACTTGGAAGGAAAATT+GGG | - | chr1_4:45721218-45721237 | Msa0165290:CDS | 25.0% |
| !!! | TTGGTTCTAGATGTATTATT+AGG | - | chr1_4:45721515-45721534 | Msa0165290:intron | 25.0% |
| ! | GGATATTATCTGAACTATTT+AGG | - | chr1_4:45721536-45721555 | Msa0165290:intron | 25.0% |
| ! | ATATCATTTATCGAAGGAAA+TGG | - | chr1_4:45721594-45721613 | Msa0165290:intron | 25.0% |
| !! | AATGTTAACTTTTGGTCAAT+AGG | - | chr1_4:45721633-45721652 | Msa0165290:intron | 25.0% |
| ! | AAACTGTATATGATTCTTCA+AGG | - | chr1_4:45721947-45721966 | Msa0165290:intron | 25.0% |
| ! | TTGGCGAAAGTTATTTAATA+TGG | - | chr1_4:45722142-45722161 | Msa0165290:intron | 25.0% |
| !! | AAAAAACAAACAAAAGTGTG+AGG | + | chr1_4:45722200-45722219 | None:intergenic | 25.0% |
| ! | TTTAATTCCTTTGTCTATTG+TGG | - | chr1_4:45722362-45722381 | Msa0165290:intron | 25.0% |
| ! | TTAATTCCTTTGTCTATTGT+GGG | - | chr1_4:45722363-45722382 | Msa0165290:intron | 25.0% |
| ! | ACCTAGAAAAGAATTATGAT+AGG | - | chr1_4:45722460-45722479 | Msa0165290:CDS | 25.0% |
| ! | CCTAGAAAAGAATTATGATA+GGG | - | chr1_4:45722461-45722480 | Msa0165290:CDS | 25.0% |
| !! | TGTCATATATTTTCTTGTGT+GGG | - | chr1_4:45722584-45722603 | Msa0165290:intron | 25.0% |
| ! | AGAGTCTAAATAGGAATAAA+TGG | - | chr1_4:45722625-45722644 | Msa0165290:intron | 25.0% |
| ! | TTCAGTTATTTGTGTTTGAA+AGG | - | chr1_4:45722907-45722926 | Msa0165290:intron | 25.0% |
| !!! | AACATCAACTTTTTTTACCA+GGG | + | chr1_4:45723159-45723178 | None:intergenic | 25.0% |
| !!! | TAACATCAACTTTTTTTACC+AGG | + | chr1_4:45723160-45723179 | None:intergenic | 25.0% |
| ! | ATAACATCAAAATACAAGCT+TGG | - | chr1_4:45723556-45723575 | Msa0165290:intron | 25.0% |
| !!! | AACTTAGGATTTTAAAGGAA+AGG | + | chr1_4:45723663-45723682 | None:intergenic | 25.0% |
| ! | ATGAAAATAAGCAAAATGAC+TGG | + | chr1_4:45723688-45723707 | None:intergenic | 25.0% |
| !! | TATTTTCATATCACGTCTAT+TGG | - | chr1_4:45723699-45723718 | Msa0165290:intron | 25.0% |
| !!! | AGTAATATTTACTTTTTGGG+AGG | - | chr1_4:45723742-45723761 | Msa0165290:intron | 25.0% |
| !!! | GTAATATTTACTTTTTGGGA+GGG | - | chr1_4:45723743-45723762 | Msa0165290:intron | 25.0% |
| ! | ATGTTATAATTAGCACTGTA+TGG | + | chr1_4:45723989-45724008 | None:intergenic | 25.0% |
| !!! | AGTCTTTTAAAGGATACAAA+CGG | + | chr1_4:45724075-45724094 | None:intergenic | 25.0% |
| !! | AAAGCAATTGGTTTCTTTAA+GGG | - | chr1_4:45724120-45724139 | Msa0165290:CDS | 25.0% |
| !!! | CAGTCGATTATATTTAGTTT+TGG | + | chr1_4:45724307-45724326 | None:intergenic | 25.0% |
| !!! | GGTTTTGTGATCATAATTTT+AGG | - | chr1_4:45724429-45724448 | Msa0165290:intron | 25.0% |
| !! | TTTGTGATCATAATTTTAGG+AGG | - | chr1_4:45724432-45724451 | Msa0165290:intron | 25.0% |
| !!! | TTGTGATCATAATTTTAGGA+GGG | - | chr1_4:45724433-45724452 | Msa0165290:intron | 25.0% |
| ! | TTAGGTTAAGCTAAACAATT+AGG | - | chr1_4:45724463-45724482 | Msa0165290:CDS | 25.0% |
| !!! | TGTTATGCCATTTTTTTTAC+TGG | - | chr1_4:45724567-45724586 | Msa0165290:intron | 25.0% |
| ! | GTGATTTCCAGTAAAAAAAA+TGG | + | chr1_4:45724577-45724596 | None:intergenic | 25.0% |
| !! | GATATTTTTCTTCTTTGCTT+AGG | - | chr1_4:45724692-45724711 | Msa0165290:intron | 25.0% |
| ! | ATATACTAATTGTGTGATTG+TGG | - | chr1_4:45724870-45724889 | Msa0165290:intron | 25.0% |
| ! | TAATGTATTTCTTAAGAGGA+AGG | - | chr1_4:45724941-45724960 | Msa0165290:intron | 25.0% |
| ! | AGCCATCATCTTAAATAATT+TGG | - | chr1_4:45725535-45725554 | Msa0165290:intron | 25.0% |
| !!! | CATTTTGGTCTCTAAATATA+TGG | - | chr1_4:45725623-45725642 | Msa0165290:intron | 25.0% |
| ! | AAGCAACTTTCAAAAATTAG+TGG | - | chr1_4:45726083-45726102 | Msa0165290:intron | 25.0% |
| ! | AGCAACTTTCAAAAATTAGT+GGG | - | chr1_4:45726084-45726103 | Msa0165290:intron | 25.0% |
| ! | AATAAATTAAGTGTGATCAG+TGG | + | chr1_4:45726144-45726163 | None:intergenic | 25.0% |
| !! | TGCATTTTCCACATTATTTT+GGG | + | chr1_4:45726502-45726521 | None:intergenic | 25.0% |
| !! | ATGCATTTTCCACATTATTT+TGG | + | chr1_4:45726503-45726522 | None:intergenic | 25.0% |
| !! | AGTATATTTTGCTGGAAATT+CGG | - | chr1_4:45726525-45726544 | Msa0165290:intron | 25.0% |
| !!! | AATTTGACTATGTTTTTGAC+TGG | - | chr1_4:45726588-45726607 | Msa0165290:CDS | 25.0% |
| ! | AGCTGAATAAGAATGAAATT+CGG | - | chr1_4:45726807-45726826 | Msa0165290:CDS | 25.0% |
| ! | GTAAACAAGGTAAAAAAAAG+GGG | + | chr1_4:45727241-45727260 | None:intergenic | 25.0% |
| ! | GGTAAACAAGGTAAAAAAAA+GGG | + | chr1_4:45727242-45727261 | None:intergenic | 25.0% |
| ! | TGGTAAACAAGGTAAAAAAA+AGG | + | chr1_4:45727243-45727262 | None:intergenic | 25.0% |
| !!! | ATCTTTTGTTTCTTTCCATA+AGG | + | chr1_4:45727827-45727846 | None:intergenic | 25.0% |
| !! | AAACAAAAGATTCAAGTTCA+TGG | - | chr1_4:45727836-45727855 | Msa0165290:five_prime_UTR | 25.0% |
| !! | ATTTAAAGCAACGAATGATA+TGG | - | chr1_4:45728147-45728166 | Msa0165290:five_prime_UTR | 25.0% |
| CAAAAGTAGTTTCACAAGTT+TGG | + | chr1_4:45720724-45720743 | None:intergenic | 30.0% | |
| TTGGAAAAACAGAATAAGGT+AGG | + | chr1_4:45720791-45720810 | None:intergenic | 30.0% | |
| !! | ATTGATTATTCTGGGATGAT+TGG | - | chr1_4:45720869-45720888 | Msa0165290:three_prime_UTR | 30.0% |
| !!! | ATGATTGGTTTTGGTTCTTT+TGG | - | chr1_4:45720884-45720903 | Msa0165290:three_prime_UTR | 30.0% |
| !!! | TGATTGGTTTTGGTTCTTTT+GGG | - | chr1_4:45720885-45720904 | Msa0165290:three_prime_UTR | 30.0% |
| TGAATAATTCCTCATTCATG+AGG | - | chr1_4:45720941-45720960 | Msa0165290:three_prime_UTR | 30.0% | |
| CAAGATTAAATGCAAATTGG+GGG | + | chr1_4:45720998-45721017 | None:intergenic | 30.0% | |
| ! | TTGTGAATTTTTGTTGGGTT+TGG | - | chr1_4:45721027-45721046 | Msa0165290:three_prime_UTR | 30.0% |
| !! | GTGAATTTTGGAAGAAAGTT+AGG | - | chr1_4:45721049-45721068 | Msa0165290:three_prime_UTR | 30.0% |
| TTTGAATTTGTCCACAATCA+AGG | - | chr1_4:45721139-45721158 | Msa0165290:CDS | 30.0% | |
| TTGAATTTGTCCACAATCAA+GGG | - | chr1_4:45721140-45721159 | Msa0165290:CDS | 30.0% | |
| TTTATCATGGATCATGTGAT+TGG | - | chr1_4:45721187-45721206 | Msa0165290:CDS | 30.0% | |
| ATTGGTGGAAAGTTTAAACT+TGG | - | chr1_4:45721205-45721224 | Msa0165290:CDS | 30.0% | |
| TCAGCTGTTAATATACAAAC+TGG | - | chr1_4:45721372-45721391 | Msa0165290:intron | 30.0% | |
| TGTTAATATACAAACTGGAG+AGG | - | chr1_4:45721377-45721396 | Msa0165290:intron | 30.0% | |
| TCTTGAAATGAGATGTGAAA+TGG | - | chr1_4:45721668-45721687 | Msa0165290:intron | 30.0% | |
| !! | TTTTTGTTATCAGTTAGTGG+TGG | - | chr1_4:45721814-45721833 | Msa0165290:CDS | 30.0% |
| TTGAATAAATCTTCCAGACT+GGG | + | chr1_4:45722049-45722068 | None:intergenic | 30.0% | |
| ATTGAATAAATCTTCCAGAC+TGG | + | chr1_4:45722050-45722069 | None:intergenic | 30.0% | |
| AGACAGACTTACTAATTGAT+CGG | + | chr1_4:45722116-45722135 | None:intergenic | 30.0% | |
| ! | CCTCTATCAAACTTTTCAAA+AGG | + | chr1_4:45722398-45722417 | None:intergenic | 30.0% |
| !! | CCTTTTGAAAAGTTTGATAG+AGG | - | chr1_4:45722395-45722414 | Msa0165290:CDS | 30.0% |
| AAAAGTTTGATAGAGGAGTA+TGG | - | chr1_4:45722402-45722421 | Msa0165290:CDS | 30.0% | |
| ! | AAAGTTTGATAGAGGAGTAT+GGG | - | chr1_4:45722403-45722422 | Msa0165290:CDS | 30.0% |
| ! | CCCTATCATAATTCTTTTCT+AGG | + | chr1_4:45722464-45722483 | None:intergenic | 30.0% |
| CTATAGACAAGTATAACACA+TGG | - | chr1_4:45722487-45722506 | Msa0165290:CDS | 30.0% | |
| ! | CTGTCATATATTTTCTTGTG+TGG | - | chr1_4:45722583-45722602 | Msa0165290:intron | 30.0% |
| CATAGTTGAAGAGTCTAAAT+AGG | - | chr1_4:45722616-45722635 | Msa0165290:intron | 30.0% | |
| GTATGACCTGAATATTAAGA+GGG | - | chr1_4:45722746-45722765 | Msa0165290:intron | 30.0% | |
| TATGACCTGAATATTAAGAG+GGG | - | chr1_4:45722747-45722766 | Msa0165290:intron | 30.0% | |
| ATATTCCCCTCTTAATATTC+AGG | + | chr1_4:45722755-45722774 | None:intergenic | 30.0% | |
| GAATATTAAGAGGGGAATAT+TGG | - | chr1_4:45722755-45722774 | Msa0165290:intron | 30.0% | |
| TGGAGAAAGATATAAATCGT+AGG | - | chr1_4:45722852-45722871 | Msa0165290:intron | 30.0% | |
| ! | ATTTCCTTCAAACTTTTGAG+AGG | + | chr1_4:45722935-45722954 | None:intergenic | 30.0% |
| ! | TTTAGAGATGAGAATTTTGC+AGG | - | chr1_4:45722982-45723001 | Msa0165290:intron | 30.0% |
| ! | TTAGAGATGAGAATTTTGCA+GGG | - | chr1_4:45722983-45723002 | Msa0165290:intron | 30.0% |
| GAAAAGATATGATTGTGCAA+TGG | - | chr1_4:45723023-45723042 | Msa0165290:intron | 30.0% | |
| ! | TAGTTTTTGACAGAATGCAA+CGG | - | chr1_4:45723420-45723439 | Msa0165290:intron | 30.0% |
| !!! | CATTTGATTCGTGGTTTTAA+TGG | - | chr1_4:45723446-45723465 | Msa0165290:intron | 30.0% |
| !! | GTTTTAATGGTTGTGTAGTT+TGG | - | chr1_4:45723459-45723478 | Msa0165290:intron | 30.0% |
| ! | TTGTGTAGTTTGGATGATTT+TGG | - | chr1_4:45723469-45723488 | Msa0165290:intron | 30.0% |
| TACCCATTATAATGAGTCTT+CGG | - | chr1_4:45723527-45723546 | Msa0165290:intron | 30.0% | |
| TGGTTGAGTAACATTTGAAT+TGG | - | chr1_4:45723576-45723595 | Msa0165290:intron | 30.0% | |
| ! | TGGTGAACTTAGGATTTTAA+AGG | + | chr1_4:45723668-45723687 | None:intergenic | 30.0% |
| CAACTCAACATTATACTCAA+GGG | + | chr1_4:45723865-45723884 | None:intergenic | 30.0% | |
| !! | TCAGTTTATTGATTTCATCG+TGG | - | chr1_4:45723955-45723974 | Msa0165290:CDS | 30.0% |
| TATAATTAGCACTGTATGGT+TGG | + | chr1_4:45723985-45724004 | None:intergenic | 30.0% | |
| ! | CAAAGCAATTGGTTTCTTTA+AGG | - | chr1_4:45724119-45724138 | Msa0165290:CDS | 30.0% |
| GTGCTAATGTATTTCTTAAG+AGG | - | chr1_4:45724937-45724956 | Msa0165290:intron | 30.0% | |
| CAAGTCATAATTACCTCTAT+TGG | + | chr1_4:45725123-45725142 | None:intergenic | 30.0% | |
| AAAAAAAAACTGACAGATGC+AGG | + | chr1_4:45725150-45725169 | None:intergenic | 30.0% | |
| AATATTTCAATCACACTCAG+TGG | - | chr1_4:45725461-45725480 | Msa0165290:intron | 30.0% | |
| GATGTACAATACTAACTTAG+AGG | - | chr1_4:45725579-45725598 | Msa0165290:intron | 30.0% | |
| AAGCATTCCTAAAGATGTTA+TGG | + | chr1_4:45725991-45726010 | None:intergenic | 30.0% | |
| ! | ATAACATCTTTAGGAATGCT+TGG | - | chr1_4:45725990-45726009 | Msa0165290:intron | 30.0% |
| GCAACTTTCAAAAATTAGTG+GGG | - | chr1_4:45726085-45726104 | Msa0165290:intron | 30.0% | |
| CAACTTTCAAAAATTAGTGG+GGG | - | chr1_4:45726086-45726105 | Msa0165290:intron | 30.0% | |
| !!! | ATAACATTTTAGGGTGTGTT+TGG | + | chr1_4:45726248-45726267 | None:intergenic | 30.0% |
| ! | AGATTTTACATGAGACAGAA+GGG | + | chr1_4:45726296-45726315 | None:intergenic | 30.0% |
| ! | AAGATTTTACATGAGACAGA+AGG | + | chr1_4:45726297-45726316 | None:intergenic | 30.0% |
| AAGTATGATACAAACTCAGA+GGG | + | chr1_4:45726385-45726404 | None:intergenic | 30.0% | |
| ACATACCTTCTCGAATAAAA+AGG | + | chr1_4:45726477-45726496 | None:intergenic | 30.0% | |
| GTATGTTACCCAAAATAATG+TGG | - | chr1_4:45726491-45726510 | Msa0165290:intron | 30.0% | |
| ! | ATGCATTCAGTATATTTTGC+TGG | - | chr1_4:45726517-45726536 | Msa0165290:intron | 30.0% |
| ! | ATCTTTTGTGCTTTATGTAC+TGG | + | chr1_4:45726768-45726787 | None:intergenic | 30.0% |
| ! | TTCATGCTATTTGTTTCAGT+TGG | - | chr1_4:45726963-45726982 | Msa0165290:intron | 30.0% |
| ! | TCATGCTATTTGTTTCAGTT+GGG | - | chr1_4:45726964-45726983 | Msa0165290:intron | 30.0% |
| !! | ATATCGAGTTGAATTGTGTT+GGG | + | chr1_4:45727525-45727544 | None:intergenic | 30.0% |
| ! | TGGATATGCAATGTTATTTG+TGG | - | chr1_4:45728054-45728073 | Msa0165290:five_prime_UTR | 30.0% |
| ACAGTGAATGTAGTTTAACA+AGG | - | chr1_4:45728097-45728116 | Msa0165290:five_prime_UTR | 30.0% | |
| TTGCTATGAATATGGTAACT+CGG | + | chr1_4:45728191-45728210 | None:intergenic | 30.0% | |
| TTCACAAGTTTGGAGATGAA+CGG | + | chr1_4:45720714-45720733 | None:intergenic | 35.0% | |
| GAATAAGGTAGGAAAAGAGA+AGG | + | chr1_4:45720780-45720799 | None:intergenic | 35.0% | |
| !!! | TATTCTGGGATGATTGGTTT+TGG | - | chr1_4:45720875-45720894 | Msa0165290:three_prime_UTR | 35.0% |
| !!! | GATTGGTTTTGGTTCTTTTG+GGG | - | chr1_4:45720886-45720905 | Msa0165290:three_prime_UTR | 35.0% |
| TTGAAACATCCTCATGAATG+AGG | + | chr1_4:45720953-45720972 | None:intergenic | 35.0% | |
| !!! | TTGTTGGGTTTGGTGAATTT+TGG | - | chr1_4:45721037-45721056 | Msa0165290:three_prime_UTR | 35.0% |
| TTGTGGACAAATTCAAACAG+AGG | + | chr1_4:45721136-45721155 | None:intergenic | 35.0% | |
| GGGCTGAATTCAATATTTGA+AGG | - | chr1_4:45721160-45721179 | Msa0165290:CDS | 35.0% | |
| GTGGAAAGTTTAAACTTGGA+AGG | - | chr1_4:45721209-45721228 | Msa0165290:CDS | 35.0% | |
| ! | AAAATTGGGAGTGGTTCTTT+TGG | - | chr1_4:45721232-45721251 | Msa0165290:CDS | 35.0% |
| !! | TCTTTTGGAGAGCTCTATTT+AGG | - | chr1_4:45721247-45721266 | Msa0165290:CDS | 35.0% |
| TAATATACAAACTGGAGAGG+AGG | - | chr1_4:45721380-45721399 | Msa0165290:intron | 35.0% | |
| CTTGCGATATCATTTATCGA+AGG | - | chr1_4:45721588-45721607 | Msa0165290:intron | 35.0% | |
| ! | GTTAACTTTTGGTCAATAGG+TGG | - | chr1_4:45721636-45721655 | Msa0165290:intron | 35.0% |
| TCCAATTTCCAATTGTCTCA+CGG | - | chr1_4:45721862-45721881 | Msa0165290:CDS | 35.0% | |
| GGTTCTGTCAAAAATATTCC+AGG | - | chr1_4:45721883-45721902 | Msa0165290:intron | 35.0% | |
| CTGTATATGATTCTTCAAGG+AGG | - | chr1_4:45721950-45721969 | Msa0165290:intron | 35.0% | |
| GTTGAATACATGCATTCAAG+AGG | - | chr1_4:45722232-45722251 | Msa0165290:CDS | 35.0% | |
| !! | AATTGTCTGGCTTTATGTCT+CGG | + | chr1_4:45722267-45722286 | None:intergenic | 35.0% |
| ! | AAAGCCAGACAATTTTCTGA+TGG | - | chr1_4:45722273-45722292 | Msa0165290:CDS | 35.0% |
| ! | AAGCCAGACAATTTTCTGAT+GGG | - | chr1_4:45722274-45722293 | Msa0165290:CDS | 35.0% |
| ATTGAACCCACAATAGACAA+AGG | + | chr1_4:45722372-45722391 | None:intergenic | 35.0% | |
| AGACAAGTATAACACATGGT+AGG | - | chr1_4:45722491-45722510 | Msa0165290:CDS | 35.0% | |
| GACAAGTATAACACATGGTA+GGG | - | chr1_4:45722492-45722511 | Msa0165290:CDS | 35.0% | |
| ATGTTCTTACTAGCATATCC+AGG | - | chr1_4:45722552-45722571 | Msa0165290:intron | 35.0% | |
| !! | ATTTTCTTGTGTGGGTTGTA+TGG | - | chr1_4:45722592-45722611 | Msa0165290:intron | 35.0% |
| GGTATGACCTGAATATTAAG+AGG | - | chr1_4:45722745-45722764 | Msa0165290:intron | 35.0% | |
| TATTAAGAGGGGAATATTGG+AGG | - | chr1_4:45722758-45722777 | Msa0165290:intron | 35.0% | |
| CATATTAATGCCACAACACA+AGG | - | chr1_4:45722782-45722801 | Msa0165290:intron | 35.0% | |
| CTTGGTATGATAGATTCAAG+GGG | + | chr1_4:45722821-45722840 | None:intergenic | 35.0% | |
| GCTTGGTATGATAGATTCAA+GGG | + | chr1_4:45722822-45722841 | None:intergenic | 35.0% | |
| ! | TTCAAGTGAGTTGGATGAAA+TGG | - | chr1_4:45722876-45722895 | Msa0165290:intron | 35.0% |
| AAACACTTGACTTCTCTTGT+TGG | + | chr1_4:45722964-45722983 | None:intergenic | 35.0% | |
| ! | TAGAGATGAGAATTTTGCAG+GGG | - | chr1_4:45722984-45723003 | Msa0165290:intron | 35.0% |
| ! | TGTTTTTCCTACTCTCTCTT+GGG | + | chr1_4:45723080-45723099 | None:intergenic | 35.0% |
| AGAATCTTGTCTAACATGTG+AGG | - | chr1_4:45723120-45723139 | Msa0165290:intron | 35.0% | |
| TGCTTGATTGCACTATGTAA+CGG | + | chr1_4:45723341-45723360 | None:intergenic | 35.0% | |
| TGCCGAAGACTCATTATAAT+GGG | + | chr1_4:45723532-45723551 | None:intergenic | 35.0% | |
| ATGCCGAAGACTCATTATAA+TGG | + | chr1_4:45723533-45723552 | None:intergenic | 35.0% | |
| GAAAAACTCAAGGACAAACA+TGG | + | chr1_4:45723615-45723634 | None:intergenic | 35.0% | |
| GAGTACTCTTGAAAAACTCA+AGG | + | chr1_4:45723625-45723644 | None:intergenic | 35.0% | |
| AGCGTAAGTCATTGAACTAA+AGG | + | chr1_4:45723778-45723797 | None:intergenic | 35.0% | |
| TTTCCTAAATTTGTCGTGCA+GGG | + | chr1_4:45723831-45723850 | None:intergenic | 35.0% | |
| ATTTCCTAAATTTGTCGTGC+AGG | + | chr1_4:45723832-45723851 | None:intergenic | 35.0% | |
| CCAACTCAACATTATACTCA+AGG | + | chr1_4:45723866-45723885 | None:intergenic | 35.0% | |
| CCTTGAGTATAATGTTGAGT+TGG | - | chr1_4:45723863-45723882 | Msa0165290:intron | 35.0% | |
| ! | TTTGACATGTGCACACATTT+TGG | - | chr1_4:45723908-45723927 | Msa0165290:intron | 35.0% |
| ! | CATTTTATCGTGTTAACGCT+AGG | + | chr1_4:45724038-45724057 | None:intergenic | 35.0% |
| GGATACAAACGGTTAAGTTT+AGG | + | chr1_4:45724064-45724083 | None:intergenic | 35.0% | |
| ! | TCATTTTGTAGTCTCCTTGT+TGG | - | chr1_4:45724095-45724114 | Msa0165290:intron | 35.0% |
| ! | CAATTGGTTTCTTTAAGGGT+GGG | - | chr1_4:45724124-45724143 | Msa0165290:CDS | 35.0% |
| !!! | GATCCCTATATTTTTTCGCA+AGG | + | chr1_4:45724378-45724397 | None:intergenic | 35.0% |
| !! | TTTTAGGAGGGAGCAATATT+AGG | - | chr1_4:45724445-45724464 | Msa0165290:intron | 35.0% |
| TGAGATCAATGGGAATTTGT+GGG | + | chr1_4:45724657-45724676 | None:intergenic | 35.0% | |
| TTGAGATCAATGGGAATTTG+TGG | + | chr1_4:45724658-45724677 | None:intergenic | 35.0% | |
| AGGGAAAATAAGAACCTTAC+AGG | - | chr1_4:45724712-45724731 | Msa0165290:intron | 35.0% | |
| AAATAAGAACCTTACAGGCA+CGG | - | chr1_4:45724717-45724736 | Msa0165290:intron | 35.0% | |
| ! | CGGTAAGTGATATTTTATGC+TGG | - | chr1_4:45724774-45724793 | Msa0165290:intron | 35.0% |
| !! | ATGCTGGTTTGTTACTTTCT+CGG | - | chr1_4:45724790-45724809 | Msa0165290:intron | 35.0% |
| TACTAATTGTGTGATTGTGG+TGG | - | chr1_4:45724873-45724892 | Msa0165290:intron | 35.0% | |
| ATGCAATAGTGCTCAATAAC+TGG | + | chr1_4:45725207-45725226 | None:intergenic | 35.0% | |
| CAGTTGAATGCAGGAAATAT+AGG | + | chr1_4:45725300-45725319 | None:intergenic | 35.0% | |
| CATTCAACTGTTAGCACTTA+GGG | - | chr1_4:45725310-45725329 | Msa0165290:intron | 35.0% | |
| TAGCCAGAAACTTTGAATAG+TGG | - | chr1_4:45725486-45725505 | Msa0165290:intron | 35.0% | |
| AGCCAGAAACTTTGAATAGT+GGG | - | chr1_4:45725487-45725506 | Msa0165290:intron | 35.0% | |
| !! | AACACAACAGAAAGTGTTGA+GGG | - | chr1_4:45725936-45725955 | Msa0165290:intron | 35.0% |
| !! | AGCCAAGCGTTTTTGTTTAA+AGG | - | chr1_4:45725963-45725982 | Msa0165290:intron | 35.0% |
| AGCCTTTAAACAAAAACGCT+TGG | + | chr1_4:45725968-45725987 | None:intergenic | 35.0% | |
| AAAGGCTCCATAACATCTTT+AGG | - | chr1_4:45725981-45726000 | Msa0165290:intron | 35.0% | |
| AAATTAAGTGTGATCAGTGG+CGG | + | chr1_4:45726141-45726160 | None:intergenic | 35.0% | |
| GAAGTATGATACAAACTCAG+AGG | + | chr1_4:45726386-45726405 | None:intergenic | 35.0% | |
| CTTCTCGAATAAAAAGGTCT+CGG | + | chr1_4:45726471-45726490 | None:intergenic | 35.0% | |
| ! | ATATTTTGCTGGAAATTCGG+TGG | - | chr1_4:45726528-45726547 | Msa0165290:intron | 35.0% |
| CATAAAGCACAAAAGATTCC+AGG | - | chr1_4:45726771-45726790 | Msa0165290:CDS | 35.0% | |
| ATCATCATAAGTCCTATGTC+TGG | + | chr1_4:45727081-45727100 | None:intergenic | 35.0% | |
| ! | ACATAGGACTTATGATGATG+TGG | - | chr1_4:45727082-45727101 | Msa0165290:intron | 35.0% |
| !! | TGAGAATGTTGTTTCCTGTT+TGG | - | chr1_4:45727159-45727178 | Msa0165290:intron | 35.0% |
| !! | CATATCGAGTTGAATTGTGT+TGG | + | chr1_4:45727526-45727545 | None:intergenic | 35.0% |
| CAACACAATTCAACTCGATA+TGG | - | chr1_4:45727524-45727543 | Msa0165290:intron | 35.0% | |
| !! | ATTTGGCTTTGATGATACCA+TGG | + | chr1_4:45727567-45727586 | None:intergenic | 35.0% |
| ACTATCAGGAAGTAATCTCA+AGG | - | chr1_4:45727746-45727765 | Msa0165290:five_prime_UTR | 35.0% | |
| CTATCAGGAAGTAATCTCAA+GGG | - | chr1_4:45727747-45727766 | Msa0165290:five_prime_UTR | 35.0% | |
| !! | TTTCTAAATTTTGGCACACC+TGG | - | chr1_4:45727789-45727808 | Msa0165290:five_prime_UTR | 35.0% |
| !! | TTCTAAATTTTGGCACACCT+GGG | - | chr1_4:45727790-45727809 | Msa0165290:five_prime_UTR | 35.0% |
| AATTACCATTGAGGTCACAA+TGG | - | chr1_4:45727868-45727887 | Msa0165290:five_prime_UTR | 35.0% | |
| !! | AATCTTCTGAAGCAATCTGA+GGG | + | chr1_4:45727922-45727941 | None:intergenic | 35.0% |
| !! | AAATCTTCTGAAGCAATCTG+AGG | + | chr1_4:45727923-45727942 | None:intergenic | 35.0% |
| !! | TTGAGTTGTAGCAAGTTTTG+TGG | - | chr1_4:45728034-45728053 | Msa0165290:five_prime_UTR | 35.0% |
| !! | AGGAAAAGAGAAGGTATCTG+TGG | + | chr1_4:45720771-45720790 | None:intergenic | 40.0% |
| !!! | TTTTGGTTCTTTTGGGGTGA+AGG | - | chr1_4:45720892-45720911 | Msa0165290:three_prime_UTR | 40.0% |
| GGACAAATTCAAACAGAGGA+AGG | + | chr1_4:45721132-45721151 | None:intergenic | 40.0% | |
| TTGAATTCAGCCCTTGATTG+TGG | + | chr1_4:45721153-45721172 | None:intergenic | 40.0% | |
| ATCATGGATCATGTGATTGG+TGG | - | chr1_4:45721190-45721209 | Msa0165290:CDS | 40.0% | |
| TTGGTCAATAGGTGGATGAT+TGG | - | chr1_4:45721644-45721663 | Msa0165290:intron | 40.0% | |
| AGCTGCAAAACAGAATTGTG+AGG | + | chr1_4:45721708-45721727 | None:intergenic | 40.0% | |
| ACCGTGAGACAATTGGAAAT+TGG | + | chr1_4:45721866-45721885 | None:intergenic | 40.0% | |
| TTTGACTCATAGTGAAGCTG+TGG | + | chr1_4:45721929-45721948 | None:intergenic | 40.0% | |
| ATGATTCTTCAAGGAGGAAC+TGG | - | chr1_4:45721956-45721975 | Msa0165290:intron | 40.0% | |
| ! | AACTCCAAACCATTTGAGGT+GGG | + | chr1_4:45721987-45722006 | None:intergenic | 40.0% |
| ! | CTCAAATGGTTTGGAGTTGA+GGG | - | chr1_4:45721989-45722008 | Msa0165290:intron | 40.0% |
| CCGACTTCAAAGTGAATTTC+CGG | + | chr1_4:45722081-45722100 | None:intergenic | 40.0% | |
| !! | CCGGAAATTCACTTTGAAGT+CGG | - | chr1_4:45722078-45722097 | Msa0165290:intron | 40.0% |
| AGTAAGTCTGTCTGTCAAGT+TGG | - | chr1_4:45722123-45722142 | Msa0165290:CDS | 40.0% | |
| TTCTTACTAGCATATCCAGG+AGG | - | chr1_4:45722555-45722574 | Msa0165290:intron | 40.0% | |
| ! | ACATTTGTTGAGTCCCACAT+TGG | - | chr1_4:45722718-45722737 | Msa0165290:intron | 40.0% |
| GGTCATACCATATCCAATGT+GGG | + | chr1_4:45722734-45722753 | None:intergenic | 40.0% | |
| AGGTCATACCATATCCAATG+TGG | + | chr1_4:45722735-45722754 | None:intergenic | 40.0% | |
| CGCTTGGTATGATAGATTCA+AGG | + | chr1_4:45722823-45722842 | None:intergenic | 40.0% | |
| ATCGTAGGATTCAAGTGAGT+TGG | - | chr1_4:45722867-45722886 | Msa0165290:intron | 40.0% | |
| GGTACCTCTCAAAAGTTTGA+AGG | - | chr1_4:45722928-45722947 | Msa0165290:intron | 40.0% | |
| TGTAAATTCGTAGTCCTGAC+AGG | + | chr1_4:45723056-45723075 | None:intergenic | 40.0% | |
| TTTACAACCCAAGAGAGAGT+AGG | - | chr1_4:45723070-45723089 | Msa0165290:intron | 40.0% | |
| ! | GTGTTTTTCCTACTCTCTCT+TGG | + | chr1_4:45723081-45723100 | None:intergenic | 40.0% |
| ! | CTGTTGCTCAGTTCTTTTCA+AGG | + | chr1_4:45723187-45723206 | None:intergenic | 40.0% |
| TCAAGGACAAACATGGAAAC+AGG | + | chr1_4:45723608-45723627 | None:intergenic | 40.0% | |
| !! | GGATTTTAAAGGAAAGGTCC+AGG | + | chr1_4:45723657-45723676 | None:intergenic | 40.0% |
| GCAAAATGACTGGTGAACTT+AGG | + | chr1_4:45723678-45723697 | None:intergenic | 40.0% | |
| GCATGCAAGTGACTTTATGT+TGG | - | chr1_4:45723930-45723949 | Msa0165290:CDS | 40.0% | |
| TCCTTGTTGGTCAAAGCAAT+TGG | - | chr1_4:45724108-45724127 | Msa0165290:CDS | 40.0% | |
| ACCAATTGCTTTGACCAACA+AGG | + | chr1_4:45724112-45724131 | None:intergenic | 40.0% | |
| ! | GCAATTGGTTTCTTTAAGGG+TGG | - | chr1_4:45724123-45724142 | Msa0165290:CDS | 40.0% |
| GGTGGGAATTTCTTAATCGT+TGG | - | chr1_4:45724141-45724160 | Msa0165290:CDS | 40.0% | |
| CACACTCTGTATCTCATTTC+AGG | - | chr1_4:45724333-45724352 | Msa0165290:intron | 40.0% | |
| TCGGCCTTGCGAAAAAATAT+AGG | - | chr1_4:45724371-45724390 | Msa0165290:intron | 40.0% | |
| CGGCCTTGCGAAAAAATATA+GGG | - | chr1_4:45724372-45724391 | Msa0165290:intron | 40.0% | |
| ATAGGGATCTTCAGACTCAT+AGG | - | chr1_4:45724389-45724408 | Msa0165290:intron | 40.0% | |
| GATCACAAAACCAACCTGTA+CGG | + | chr1_4:45724421-45724440 | None:intergenic | 40.0% | |
| TGGCATAACAGCCTGTTAAA+GGG | + | chr1_4:45724557-45724576 | None:intergenic | 40.0% | |
| ATGGCATAACAGCCTGTTAA+AGG | + | chr1_4:45724558-45724577 | None:intergenic | 40.0% | |
| !! | TCACTTACCGATTCCAAGAT+GGG | + | chr1_4:45724764-45724783 | None:intergenic | 40.0% |
| !! | ATCACTTACCGATTCCAAGA+TGG | + | chr1_4:45724765-45724784 | None:intergenic | 40.0% |
| !! | GGTTTGTTACTTTCTCGGTT+AGG | - | chr1_4:45724795-45724814 | Msa0165290:intron | 40.0% |
| !!! | TTTCCTTTTTCAGTCTTCCC+TGG | - | chr1_4:45725031-45725050 | Msa0165290:intron | 40.0% |
| CGATAAAATCAGTGAGACGA+AGG | - | chr1_4:45725089-45725108 | Msa0165290:intron | 40.0% | |
| !! | GAAGGTATCAACTCCAATAG+AGG | - | chr1_4:45725107-45725126 | Msa0165290:intron | 40.0% |
| AAGTGCTAACAGTTGAATGC+AGG | + | chr1_4:45725309-45725328 | None:intergenic | 40.0% | |
| GCATTCAACTGTTAGCACTT+AGG | - | chr1_4:45725309-45725328 | Msa0165290:intron | 40.0% | |
| GCCAGAAACTTTGAATAGTG+GGG | - | chr1_4:45725488-45725507 | Msa0165290:intron | 40.0% | |
| CCAGAAACTTTGAATAGTGG+GGG | - | chr1_4:45725489-45725508 | Msa0165290:intron | 40.0% | |
| CTCAACACTTTCTGTTGTGT+TGG | + | chr1_4:45725937-45725956 | None:intergenic | 40.0% | |
| !! | CAACACAACAGAAAGTGTTG+AGG | - | chr1_4:45725935-45725954 | Msa0165290:intron | 40.0% |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr1_4:45726230-45726249 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr1_4:45726234-45726253 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | + | chr1_4:45726240-45726259 | None:intergenic | 40.0% | |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | + | chr1_4:45726241-45726260 | None:intergenic | 40.0% |
| ! | CGAGACCTTTTTATTCGAGA+AGG | - | chr1_4:45726469-45726488 | Msa0165290:intron | 40.0% |
| ! | TTGAAGTATCCACAGAGTAG+TGG | - | chr1_4:45726617-45726636 | Msa0165290:CDS | 40.0% |
| ! | TTTTTGTTGGTCGCTTACTG+TGG | - | chr1_4:45726691-45726710 | Msa0165290:intron | 40.0% |
| TTTCAGTTGGGAGAGAGATT+CGG | - | chr1_4:45726976-45726995 | Msa0165290:intron | 40.0% | |
| GAGATTCGGGAGAAATTATC+TGG | - | chr1_4:45726990-45727009 | Msa0165290:intron | 40.0% | |
| AACGTCTTGTCAAACCAAAC+AGG | + | chr1_4:45727176-45727195 | None:intergenic | 40.0% | |
| TCATCAAAGCCAAATTCCTC+AGG | - | chr1_4:45727572-45727591 | Msa0165290:intron | 40.0% | |
| GCTTGTTTCGTATCATACAC+AGG | + | chr1_4:45727659-45727678 | None:intergenic | 40.0% | |
| ! | AAGCAACTTTTGCTCGCAAT+GGG | - | chr1_4:45727675-45727694 | Msa0165290:exon | 40.0% |
| ! | GAGATTACTTCCTGATAGTG+AGG | + | chr1_4:45727745-45727764 | None:intergenic | 40.0% |
| ATAAGGCTTCTTGAAATCCC+AGG | + | chr1_4:45727810-45727829 | None:intergenic | 40.0% | |
| TGGGATTTCAAGAAGCCTTA+TGG | - | chr1_4:45727809-45727828 | Msa0165290:five_prime_UTR | 40.0% | |
| AGGGGATCTAGAAATGATGT+CGG | + | chr1_4:45727903-45727922 | None:intergenic | 40.0% | |
| !! | ATCTTCTGAAGCAATCTGAG+GGG | + | chr1_4:45727921-45727940 | None:intergenic | 40.0% |
| !! | AACGAATGATATGGTGCTGT+AGG | - | chr1_4:45728156-45728175 | Msa0165290:five_prime_UTR | 40.0% |
| ACAAGTTTGGAGATGAACGG+AGG | + | chr1_4:45720711-45720730 | None:intergenic | 45.0% | |
| TTGGGGTGAAGGAATGTAGT+TGG | - | chr1_4:45720903-45720922 | Msa0165290:three_prime_UTR | 45.0% | |
| CTTGGAAGGAAAATTGGGAG+TGG | - | chr1_4:45721223-45721242 | Msa0165290:CDS | 45.0% | |
| TATACAAACTGGAGAGGAGG+TGG | - | chr1_4:45721383-45721402 | Msa0165290:intron | 45.0% | |
| CGCAAGCATGCTCAATTTCA+TGG | + | chr1_4:45721574-45721593 | None:intergenic | 45.0% | |
| TGACAGAACCGTGAGACAAT+TGG | + | chr1_4:45721873-45721892 | None:intergenic | 45.0% | |
| ! | ACTCCAAACCATTTGAGGTG+GGG | + | chr1_4:45721986-45722005 | None:intergenic | 45.0% |
| CAACTCCAAACCATTTGAGG+TGG | + | chr1_4:45721988-45722007 | None:intergenic | 45.0% | |
| CCTCAACTCCAAACCATTTG+AGG | + | chr1_4:45721991-45722010 | None:intergenic | 45.0% | |
| ! | CCTCAAATGGTTTGGAGTTG+AGG | - | chr1_4:45721988-45722007 | Msa0165290:intron | 45.0% |
| ! | TGAGGGAGAGTACAATGTCA+TGG | - | chr1_4:45722006-45722025 | Msa0165290:intron | 45.0% |
| AGGCCCATCAGAAAATTGTC+TGG | + | chr1_4:45722280-45722299 | None:intergenic | 45.0% | |
| !! | GACAATTTTCTGATGGGCCT+CGG | - | chr1_4:45722280-45722299 | Msa0165290:intron | 45.0% |
| !! | CTTGATTTGCTTTACGTCCG+AGG | + | chr1_4:45722300-45722319 | None:intergenic | 45.0% |
| TATATGACAGCGTTACCTCC+TGG | + | chr1_4:45722573-45722592 | None:intergenic | 45.0% | |
| GTTGAGTCCCACATTGGATA+TGG | - | chr1_4:45722724-45722743 | Msa0165290:intron | 45.0% | |
| AAACTGTGCACCTTGTGTTG+TGG | + | chr1_4:45722795-45722814 | None:intergenic | 45.0% | |
| CAACACAAGGTGCACAGTTT+CGG | - | chr1_4:45722795-45722814 | Msa0165290:intron | 45.0% | |
| CATACCAAGCGACGAAGAAA+TGG | - | chr1_4:45722832-45722851 | Msa0165290:intron | 45.0% | |
| TTCTCCATTTCTTCGTCGCT+TGG | + | chr1_4:45722839-45722858 | None:intergenic | 45.0% | |
| ! | AGAATTTTGCAGGGGATGAG+TGG | - | chr1_4:45722992-45723011 | Msa0165290:intron | 45.0% |
| GCAATGGAATAACACCTGTC+AGG | - | chr1_4:45723039-45723058 | Msa0165290:intron | 45.0% | |
| GAGGAGTCTAATAGAAACCC+TGG | - | chr1_4:45723139-45723158 | Msa0165290:intron | 45.0% | |
| GCAGGGATCTATGCTATGAA+CGG | + | chr1_4:45723814-45723833 | None:intergenic | 45.0% | |
| GATCCCTGCACGACAAATTT+AGG | - | chr1_4:45723825-45723844 | Msa0165290:intron | 45.0% | |
| !! | CAGGTGTATGCCATTGACTT+CGG | - | chr1_4:45724352-45724371 | Msa0165290:intron | 45.0% |
| CGCATTTGCATCCCTTTAAC+AGG | - | chr1_4:45724543-45724562 | Msa0165290:intron | 45.0% | |
| GTCAACACCCATCTTGGAAT+CGG | - | chr1_4:45724754-45724773 | Msa0165290:intron | 45.0% | |
| ACAAAGTCGAAGGGATGATC+TGG | - | chr1_4:45724900-45724919 | Msa0165290:intron | 45.0% | |
| ! | AGGGATGATCTGGAATCTCT+TGG | - | chr1_4:45724910-45724929 | Msa0165290:intron | 45.0% |
| TTGCCAGGGAAGACTGAAAA+AGG | + | chr1_4:45725037-45725056 | None:intergenic | 45.0% | |
| !! | TTTTTCAGTCTTCCCTGGCA+AGG | - | chr1_4:45725036-45725055 | Msa0165290:intron | 45.0% |
| GTTAGCACTTAGGGTGTGTT+TGG | - | chr1_4:45725319-45725338 | Msa0165290:intron | 45.0% | |
| CACTTAGGGTGTGTTTGGAT+GGG | - | chr1_4:45725324-45725343 | Msa0165290:intron | 45.0% | |
| GTGTGTTTGGATGGGTGTTT+AGG | - | chr1_4:45725332-45725351 | Msa0165290:intron | 45.0% | |
| TGTTTGGATGGGTGTTTAGG+AGG | - | chr1_4:45725335-45725354 | Msa0165290:intron | 45.0% | |
| GTTTGGATGGGTGTTTAGGA+GGG | - | chr1_4:45725336-45725355 | Msa0165290:intron | 45.0% | |
| TTTGGATGGGTGTTTAGGAG+GGG | - | chr1_4:45725337-45725356 | Msa0165290:intron | 45.0% | |
| CCCCCACTATTCAAAGTTTC+TGG | + | chr1_4:45725492-45725511 | None:intergenic | 45.0% | |
| AGCCACGTTAAGCTATCTGT+GGG | + | chr1_4:45726118-45726137 | None:intergenic | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr1_4:45726229-45726248 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr1_4:45726231-45726250 | None:intergenic | 45.0% | |
| GAGACAGAAGGGAAATGAAG+AGG | + | chr1_4:45726285-45726304 | None:intergenic | 45.0% | |
| TGTCCTCAAACCTCAACGAA+CGG | + | chr1_4:45726417-45726436 | None:intergenic | 45.0% | |
| TGGTTGTTGTAACGACAGCA+TGG | - | chr1_4:45726711-45726730 | Msa0165290:intron | 45.0% | |
| CTGTCACAGCACATATTAGC+AGG | + | chr1_4:45726836-45726855 | None:intergenic | 45.0% | |
| TTCAGTTGGGAGAGAGATTC+GGG | - | chr1_4:45726977-45726996 | Msa0165290:intron | 45.0% | |
| ! | TTGTTGAAGCATTCACCCAG+AGG | - | chr1_4:45727018-45727037 | Msa0165290:intron | 45.0% |
| GCAAATTCTAGCCCTCATCA+CGG | - | chr1_4:45727047-45727066 | Msa0165290:intron | 45.0% | |
| AAGCAGTTCAAGAAGAGCCA+TGG | - | chr1_4:45727547-45727566 | Msa0165290:intron | 45.0% | |
| GAATGGTCACCTGAGGAATT+TGG | + | chr1_4:45727584-45727603 | None:intergenic | 45.0% | |
| AATTCCTCAGGTGACCATTC+TGG | - | chr1_4:45727584-45727603 | Msa0165290:intron | 45.0% | |
| ! | CAAGCAACTTTTGCTCGCAA+TGG | - | chr1_4:45727674-45727693 | Msa0165290:exon | 45.0% |
| TCATGCCATTGTGACCTCAA+TGG | + | chr1_4:45727876-45727895 | None:intergenic | 45.0% | |
| GGGGATCTAGAAATGATGTC+GGG | + | chr1_4:45727902-45727921 | None:intergenic | 45.0% | |
| !!! | TGATATTTTTTTTTTTTTTT+TGG | + | chr1_4:45720810-45720829 | None:intergenic | 5.0% |
| TGGAGATGAACGGAGGAAGT+GGG | + | chr1_4:45720704-45720723 | None:intergenic | 50.0% | |
| TTGGAGATGAACGGAGGAAG+TGG | + | chr1_4:45720705-45720724 | None:intergenic | 50.0% | |
| TGTGGTGTGCTGGATGAAAG+AGG | + | chr1_4:45720753-45720772 | None:intergenic | 50.0% | |
| !! | AGAAGGTATCTGTGGTGTGC+TGG | + | chr1_4:45720763-45720782 | None:intergenic | 50.0% |
| TCCAGGAATCTGTGAAGACC+AGG | - | chr1_4:45721900-45721919 | Msa0165290:intron | 50.0% | |
| ATAGTGAAGCTGTGGATGCC+TGG | + | chr1_4:45721921-45721940 | None:intergenic | 50.0% | |
| ATCCCCCACCTCAAATGGTT+TGG | - | chr1_4:45721980-45721999 | Msa0165290:intron | 50.0% | |
| ! | CTCCAAACCATTTGAGGTGG+GGG | + | chr1_4:45721985-45722004 | None:intergenic | 50.0% |
| GTCATGGTCATCGACCTTCT+TGG | - | chr1_4:45722022-45722041 | Msa0165290:intron | 50.0% | |
| CAAGCAACTGCAAGCTAGTC+AGG | - | chr1_4:45723355-45723374 | Msa0165290:intron | 50.0% | |
| ! | CAACGGCGTCATTTGATTCG+TGG | - | chr1_4:45723437-45723456 | Msa0165290:intron | 50.0% |
| ! | AGAGTACTCTCACTTCGTCC+TGG | - | chr1_4:45723636-45723655 | Msa0165290:intron | 50.0% |
| TTTCGCAAGGCCGAAGTCAA+TGG | + | chr1_4:45724365-45724384 | None:intergenic | 50.0% | |
| CTCATAGGCACATACCGTAC+AGG | - | chr1_4:45724404-45724423 | Msa0165290:intron | 50.0% | |
| TAGGCACATACCGTACAGGT+TGG | - | chr1_4:45724408-45724427 | Msa0165290:intron | 50.0% | |
| GCAAGTGTCAACACCCATCT+TGG | - | chr1_4:45724748-45724767 | Msa0165290:intron | 50.0% | |
| TGGTGGCAGAACAAAGTCGA+AGG | - | chr1_4:45724890-45724909 | Msa0165290:intron | 50.0% | |
| GGTGGCAGAACAAAGTCGAA+GGG | - | chr1_4:45724891-45724910 | Msa0165290:intron | 50.0% | |
| GCACTTAGGGTGTGTTTGGA+TGG | - | chr1_4:45725323-45725342 | Msa0165290:intron | 50.0% | |
| AGCCCACAGATAGCTTAACG+TGG | - | chr1_4:45726113-45726132 | Msa0165290:intron | 50.0% | |
| GAGCCACGTTAAGCTATCTG+TGG | + | chr1_4:45726119-45726138 | None:intergenic | 50.0% | |
| TGGATTGAGGGTTTAGGAGG+GGG | + | chr1_4:45726228-45726247 | None:intergenic | 50.0% | |
| TCCACTATTGCCGTTCGTTG+AGG | - | chr1_4:45726404-45726423 | Msa0165290:intron | 50.0% | |
| ACCTCAACGAACGGCAATAG+TGG | + | chr1_4:45726408-45726427 | None:intergenic | 50.0% | |
| TTGCCGTTCGTTGAGGTTTG+AGG | - | chr1_4:45726411-45726430 | Msa0165290:intron | 50.0% | |
| TCGGTGGTTGTGAATTGACG+TGG | - | chr1_4:45726544-45726563 | Msa0165290:intron | 50.0% | |
| CGGTGGTTGTGAATTGACGT+GGG | - | chr1_4:45726545-45726564 | Msa0165290:intron | 50.0% | |
| TTGTAACGACAGCATGGCAC+TGG | - | chr1_4:45726717-45726736 | Msa0165290:intron | 50.0% | |
| CAGCTGAAAGACAACAGACC+TGG | + | chr1_4:45726792-45726811 | None:intergenic | 50.0% | |
| AGAATTTGCGCGGTTCCTCT+GGG | + | chr1_4:45727036-45727055 | None:intergenic | 50.0% | |
| TAGAATTTGCGCGGTTCCTC+TGG | + | chr1_4:45727037-45727056 | None:intergenic | 50.0% | |
| GATGAGGGCTAGAATTTGCG+CGG | + | chr1_4:45727046-45727065 | None:intergenic | 50.0% | |
| TGGTGTGTTCACCGTGATGA+GGG | + | chr1_4:45727061-45727080 | None:intergenic | 50.0% | |
| ACGGTGAACACACCAGACAT+AGG | - | chr1_4:45727066-45727085 | Msa0165290:intron | 50.0% | |
| TGAACTCTATGTGCGCCAGA+TGG | + | chr1_4:45727635-45727654 | None:intergenic | 50.0% | |
| AGCTCCTCAGAGGATCATCA+CGG | + | chr1_4:45727715-45727734 | None:intergenic | 50.0% | |
| ! | GCTTTGAGCTCCTCACTATC+AGG | - | chr1_4:45727732-45727751 | Msa0165290:five_prime_UTR | 50.0% |
| !! | CGGAGGAAGTGGGTCTTGTT+TGG | + | chr1_4:45720694-45720713 | None:intergenic | 55.0% |
| AGAGGAGGTGGCTGTTAAGC+TGG | - | chr1_4:45721395-45721414 | Msa0165290:intron | 55.0% | |
| ! | GCCTGGTCTTCACAGATTCC+TGG | + | chr1_4:45721904-45721923 | None:intergenic | 55.0% |
| CTGGAATCCCCCACCTCAAA+TGG | - | chr1_4:45721975-45721994 | Msa0165290:intron | 55.0% | |
| CTTCCAGACTGGGTCCAAGA+AGG | + | chr1_4:45722039-45722058 | None:intergenic | 55.0% | |
| TCTTCCCTGGCAAGGACTGA+GGG | - | chr1_4:45725044-45725063 | Msa0165290:intron | 55.0% | |
| GATGGGTGTTTAGGAGGGGA+GGG | - | chr1_4:45725341-45725360 | Msa0165290:intron | 55.0% | |
| ATGGGTGTTTAGGAGGGGAG+GGG | - | chr1_4:45725342-45725361 | Msa0165290:intron | 55.0% | |
| TGTTTAGGAGGGGAGGGGAA+GGG | - | chr1_4:45725347-45725366 | Msa0165290:intron | 55.0% | |
| TGAGGGTTTAGGAGGGGGAA+GGG | + | chr1_4:45726223-45726242 | None:intergenic | 55.0% | |
| TTGAGGGTTTAGGAGGGGGA+AGG | + | chr1_4:45726224-45726243 | None:intergenic | 55.0% | |
| !! | GACGTGGGCATTGATCATGC+AGG | - | chr1_4:45726560-45726579 | Msa0165290:CDS | 55.0% |
| CTAGAGCTGCCACTACTCTG+TGG | + | chr1_4:45726629-45726648 | None:intergenic | 55.0% | |
| ! | CAGAGTAGTGGCAGCTCTAG+AGG | - | chr1_4:45726629-45726648 | Msa0165290:CDS | 55.0% |
| !! | GTAGTGGCAGCTCTAGAGGA+CGG | - | chr1_4:45726633-45726652 | Msa0165290:CDS | 55.0% |
| !! | TAGTGGCAGCTCTAGAGGAC+GGG | - | chr1_4:45726634-45726653 | Msa0165290:CDS | 55.0% |
| CTGGTGTGTTCACCGTGATG+AGG | + | chr1_4:45727062-45727081 | None:intergenic | 55.0% | |
| AGGTGACCATTCTGGCAGGA+TGG | - | chr1_4:45727592-45727611 | Msa0165290:intron | 55.0% | |
| TTGTGGCCATCCTGCCAGAA+TGG | + | chr1_4:45727601-45727620 | None:intergenic | 55.0% | |
| CTCTATGTGCGCCAGATGGA+CGG | + | chr1_4:45727631-45727650 | None:intergenic | 55.0% | |
| GCTCGCAATGGGTCTATGAG+AGG | - | chr1_4:45727686-45727705 | Msa0165290:five_prime_UTR | 55.0% | |
| TCCTCAGAGGATCATCACGG+TGG | + | chr1_4:45727712-45727731 | None:intergenic | 55.0% | |
| AGGAGCTCAAAGCTCCTCAG+AGG | + | chr1_4:45727725-45727744 | None:intergenic | 55.0% | |
| CGACCTTCTTGGACCCAGTC+TGG | - | chr1_4:45722033-45722052 | Msa0165290:intron | 60.0% | |
| CATAGCGTGCCGTGCCTGTA+AGG | + | chr1_4:45724729-45724748 | None:intergenic | 60.0% | |
| GTCTTCCCTGGCAAGGACTG+AGG | - | chr1_4:45725043-45725062 | Msa0165290:intron | 60.0% | |
| GGATGGGTGTTTAGGAGGGG+AGG | - | chr1_4:45725340-45725359 | Msa0165290:intron | 60.0% | |
| GTGTTTAGGAGGGGAGGGGA+AGG | - | chr1_4:45725346-45725365 | Msa0165290:intron | 60.0% | |
| GTTTAGGAGGGGGAAGGGAG+GGG | + | chr1_4:45726218-45726237 | None:intergenic | 60.0% | |
| GGTTTAGGAGGGGGAAGGGA+GGG | + | chr1_4:45726219-45726238 | None:intergenic | 60.0% | |
| !! | ACGACAGCATGGCACTGGCA+AGG | - | chr1_4:45726722-45726741 | Msa0165290:intron | 60.0% |
| CCTGCCAGAATGGTCACCTG+AGG | + | chr1_4:45727591-45727610 | None:intergenic | 60.0% | |
| CCTCAGGTGACCATTCTGGC+AGG | - | chr1_4:45727588-45727607 | Msa0165290:intron | 60.0% | |
| TCTGGCAGGATGGCCACAAG+TGG | - | chr1_4:45727602-45727621 | Msa0165290:intron | 60.0% | |
| CTGGCAGGATGGCCACAAGT+GGG | - | chr1_4:45727603-45727622 | Msa0165290:intron | 60.0% | |
| TGGCAGGATGGCCACAAGTG+GGG | - | chr1_4:45727604-45727623 | Msa0165290:intron | 60.0% | |
| GCCACCGTGATGATCCTCTG+AGG | - | chr1_4:45727708-45727727 | Msa0165290:five_prime_UTR | 60.0% | |
| CCAGCCCTCAGTCCTTGCCA+GGG | + | chr1_4:45725051-45725070 | None:intergenic | 65.0% | |
| TCCAGCCCTCAGTCCTTGCC+AGG | + | chr1_4:45725052-45725071 | None:intergenic | 65.0% | |
| TTAGGAGGGGAGGGGAAGGG+AGG | - | chr1_4:45725350-45725369 | Msa0165290:intron | 65.0% | |
| TAGGAGGGGAGGGGAAGGGA+GGG | - | chr1_4:45725351-45725370 | Msa0165290:intron | 65.0% | |
| GGGTTTAGGAGGGGGAAGGG+AGG | + | chr1_4:45726220-45726239 | None:intergenic | 65.0% | |
| GGCAGGATGGCCACAAGTGG+GGG | - | chr1_4:45727605-45727624 | Msa0165290:intron | 65.0% | |
| AGATGGACGGCCCCCACTTG+TGG | + | chr1_4:45727618-45727637 | None:intergenic | 65.0% | |
| ACAAGTGGGGGCCGTCCATC+TGG | - | chr1_4:45727617-45727636 | Msa0165290:CDS | 65.0% | |
| CCCTGGCAAGGACTGAGGGC+TGG | - | chr1_4:45725048-45725067 | Msa0165290:intron | 70.0% | |
| AGGAGGGGAGGGGAAGGGAG+GGG | - | chr1_4:45725352-45725371 | Msa0165290:intron | 70.0% | |
| AGGAGGGGGAAGGGAGGGGA+GGG | + | chr1_4:45726214-45726233 | None:intergenic | 70.0% | |
| TAGGAGGGGGAAGGGAGGGG+AGG | + | chr1_4:45726215-45726234 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 45720619 | 45728258 | 45720619 | ID=Msa0165290;Name=Msa0165290 |
| chr1_4 | mRNA | 45720619 | 45728258 | 45720619 | ID=Msa0165290-mRNA-1;Parent=Msa0165290;Name=Msa0165290-mRNA-1;_AED=0.10;_eAED=0.10;_QI=574|0.71|0.8|0.86|1|1|15|498|461 |
| chr1_4 | exon | 45720619 | 45721362 | 45720619 | ID=Msa0165290-mRNA-1:exon:13101;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45721774 | 45721895 | 45721774 | ID=Msa0165290-mRNA-1:exon:13100;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45722085 | 45722148 | 45722085 | ID=Msa0165290-mRNA-1:exon:13099;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45722222 | 45722295 | 45722222 | ID=Msa0165290-mRNA-1:exon:13098;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45722387 | 45722513 | 45722387 | ID=Msa0165290-mRNA-1:exon:13097;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45723749 | 45723833 | 45723749 | ID=Msa0165290-mRNA-1:exon:13096;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45723915 | 45723978 | 45723915 | ID=Msa0165290-mRNA-1:exon:13095;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45724102 | 45724163 | 45724102 | ID=Msa0165290-mRNA-1:exon:13094;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45724452 | 45724522 | 45724452 | ID=Msa0165290-mRNA-1:exon:13093;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45726559 | 45726654 | 45726559 | ID=Msa0165290-mRNA-1:exon:13092;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45726727 | 45726972 | 45726727 | ID=Msa0165290-mRNA-1:exon:13091;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45727045 | 45727050 | 45727045 | ID=Msa0165290-mRNA-1:exon:13090;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45727383 | 45727388 | 45727383 | ID=Msa0165290-mRNA-1:exon:13089;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45727461 | 45727501 | 45727461 | ID=Msa0165290-mRNA-1:exon:13088;Parent=Msa0165290-mRNA-1 |
| chr1_4 | exon | 45727609 | 45728258 | 45727609 | ID=Msa0165290-mRNA-1:exon:13087;Parent=Msa0165290-mRNA-1 |
| chr1_4 | five_prime_UTR | 45727685 | 45728258 | 45727685 | ID=Msa0165290-mRNA-1:five_prime_utr;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45727609 | 45727684 | 45727609 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45727461 | 45727501 | 45727461 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45727383 | 45727388 | 45727383 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45727045 | 45727050 | 45727045 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45726727 | 45726972 | 45726727 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45726559 | 45726654 | 45726559 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45724452 | 45724522 | 45724452 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45724102 | 45724163 | 45724102 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45723915 | 45723978 | 45723915 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45723749 | 45723833 | 45723749 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45722387 | 45722513 | 45722387 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45722222 | 45722295 | 45722222 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45722085 | 45722148 | 45722085 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45721774 | 45721895 | 45721774 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | CDS | 45721117 | 45721362 | 45721117 | ID=Msa0165290-mRNA-1:cds;Parent=Msa0165290-mRNA-1 |
| chr1_4 | three_prime_UTR | 45720619 | 45721116 | 45720619 | ID=Msa0165290-mRNA-1:three_prime_utr;Parent=Msa0165290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
