Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092140 | XP_039683963.1 | 98.884 | 448 | 5 | 0 | 1 | 448 | 1 | 448 | 0.0 | 925 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092140 | sp|Q8LPJ1|CKL6_ARATH | 72.594 | 478 | 98 | 11 | 1 | 448 | 5 | 479 | 0.0 | 679 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092140 | A0A072VLK3 | 97.577 | 454 | 5 | 1 | 1 | 448 | 1 | 454 | 0.0 | 919 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092050 | Msa0092140 | 0.985421 | 1.636959e-163 | -8.615850e-47 |
| Msa0092140 | Msa0122800 | 0.982053 | 4.121067e-154 | -8.615850e-47 |
| Msa0092140 | Msa0165230 | 0.947842 | 3.055567e-106 | -8.615850e-47 |
| Msa0092140 | Msa0165290 | 0.940109 | 4.088292e-100 | -8.615850e-47 |
| Msa0092140 | Msa1415960 | 0.961304 | 1.509817e-119 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092140 | MtrunA17_Chr1g0183631 | 97.577 | 454 | 5 | 1 | 1 | 448 | 1 | 454 | 0.0 | 919 |
| Msa0092140 | MtrunA17_Chr7g0261501 | 78.065 | 465 | 83 | 7 | 1 | 448 | 1 | 463 | 0.0 | 726 |
| Msa0092140 | MtrunA17_Chr1g0187571 | 71.304 | 460 | 115 | 6 | 1 | 446 | 2 | 458 | 0.0 | 641 |
| Msa0092140 | MtrunA17_Chr1g0166821 | 71.145 | 454 | 120 | 5 | 1 | 446 | 2 | 452 | 0.0 | 632 |
| Msa0092140 | MtrunA17_Chr2g0329981 | 65.358 | 433 | 114 | 8 | 1 | 425 | 1 | 405 | 0.0 | 551 |
| Msa0092140 | MtrunA17_Chr4g0071031 | 72.222 | 360 | 87 | 4 | 1 | 347 | 1 | 360 | 0.0 | 545 |
| Msa0092140 | MtrunA17_Chr8g0342821 | 59.958 | 472 | 154 | 10 | 1 | 444 | 1 | 465 | 0.0 | 540 |
| Msa0092140 | MtrunA17_Chr2g0299661 | 55.274 | 474 | 176 | 6 | 1 | 447 | 1 | 465 | 0.0 | 516 |
| Msa0092140 | MtrunA17_Chr6g0486611 | 76.797 | 306 | 71 | 0 | 1 | 306 | 1 | 306 | 2.51e-179 | 508 |
| Msa0092140 | MtrunA17_Chr1g0167261 | 66.935 | 372 | 90 | 4 | 1 | 370 | 2 | 342 | 6.97e-178 | 501 |
| Msa0092140 | MtrunA17_Chr8g0390211 | 77.181 | 298 | 68 | 0 | 1 | 298 | 1 | 298 | 3.13e-177 | 502 |
| Msa0092140 | MtrunA17_Chr3g0140071 | 55.582 | 421 | 171 | 4 | 1 | 417 | 1 | 409 | 3.06e-164 | 469 |
| Msa0092140 | MtrunA17_Chr1g0146151 | 70.508 | 295 | 87 | 0 | 1 | 295 | 1 | 295 | 1.34e-162 | 465 |
| Msa0092140 | MtrunA17_Chr7g0214531 | 37.716 | 289 | 161 | 6 | 5 | 277 | 31 | 316 | 9.44e-58 | 200 |
| Msa0092140 | MtrunA17_Chr3g0140431 | 37.276 | 279 | 162 | 6 | 5 | 273 | 32 | 307 | 6.90e-55 | 192 |
| Msa0092140 | MtrunA17_Chr1g0146301 | 36.918 | 279 | 163 | 6 | 5 | 273 | 118 | 393 | 3.86e-54 | 191 |
| Msa0092140 | MtrunA17_Chr1g0213321 | 36.268 | 284 | 167 | 6 | 5 | 277 | 113 | 393 | 1.13e-53 | 190 |
| Msa0092140 | MtrunA17_Chr7g0253211 | 36.525 | 282 | 163 | 5 | 9 | 277 | 324 | 602 | 6.49e-53 | 190 |
| Msa0092140 | MtrunA17_Chr8g0340491 | 36.170 | 282 | 158 | 7 | 9 | 273 | 128 | 404 | 9.78e-50 | 179 |
| Msa0092140 | MtrunA17_Chr5g0405421 | 26.818 | 220 | 144 | 6 | 8 | 219 | 98 | 308 | 3.11e-14 | 74.7 |
| Msa0092140 | MtrunA17_Chr7g0267751 | 29.167 | 216 | 131 | 9 | 9 | 215 | 135 | 337 | 9.08e-14 | 73.6 |
| Msa0092140 | MtrunA17_Chr4g0072831 | 32.680 | 153 | 71 | 6 | 7 | 153 | 8 | 134 | 2.91e-13 | 70.5 |
| Msa0092140 | MtrunA17_Chr3g0107051 | 29.817 | 218 | 133 | 9 | 5 | 214 | 17 | 222 | 8.51e-13 | 70.1 |
| Msa0092140 | MtrunA17_Chr7g0245031 | 34.375 | 128 | 70 | 4 | 109 | 236 | 252 | 365 | 1.92e-12 | 68.9 |
| Msa0092140 | MtrunA17_Chr8g0346071 | 30.415 | 217 | 126 | 9 | 7 | 213 | 15 | 216 | 1.01e-11 | 66.6 |
| Msa0092140 | MtrunA17_Chr7g0267771 | 26.522 | 230 | 142 | 8 | 9 | 228 | 88 | 300 | 1.06e-11 | 66.6 |
| Msa0092140 | MtrunA17_Chr5g0444171 | 27.488 | 211 | 137 | 6 | 9 | 213 | 92 | 292 | 2.81e-11 | 65.5 |
| Msa0092140 | MtrunA17_Chr8g0374701 | 27.948 | 229 | 139 | 10 | 6 | 219 | 122 | 339 | 3.10e-11 | 65.5 |
| Msa0092140 | MtrunA17_Chr1g0201571 | 28.302 | 212 | 127 | 9 | 9 | 209 | 126 | 323 | 3.46e-11 | 65.5 |
| Msa0092140 | MtrunA17_Chr1g0157131 | 27.652 | 264 | 158 | 10 | 4 | 251 | 69 | 315 | 5.09e-11 | 64.7 |
| Msa0092140 | MtrunA17_Chr4g0075541 | 25.887 | 282 | 179 | 10 | 11 | 281 | 89 | 351 | 5.17e-11 | 64.3 |
| Msa0092140 | MtrunA17_Chr8g0387671 | 29.437 | 231 | 134 | 11 | 9 | 228 | 66 | 278 | 6.83e-11 | 64.3 |
| Msa0092140 | MtrunA17_Chr3g0107011 | 26.070 | 257 | 137 | 10 | 3 | 236 | 8 | 234 | 8.99e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092140 | AT4G28540.1 | 72.594 | 478 | 98 | 11 | 1 | 448 | 5 | 479 | 0.0 | 679 |
| Msa0092140 | AT4G14340.1 | 70.861 | 453 | 116 | 7 | 1 | 446 | 7 | 450 | 0.0 | 642 |
| Msa0092140 | AT3G23340.1 | 71.938 | 449 | 110 | 7 | 1 | 446 | 1 | 436 | 0.0 | 642 |
| Msa0092140 | AT1G03930.1 | 68.354 | 474 | 121 | 8 | 1 | 448 | 1 | 471 | 0.0 | 626 |
| Msa0092140 | AT5G43320.1 | 67.579 | 475 | 124 | 7 | 1 | 446 | 1 | 474 | 0.0 | 625 |
| Msa0092140 | AT3G23340.2 | 69.265 | 449 | 108 | 8 | 1 | 446 | 1 | 422 | 0.0 | 608 |
| Msa0092140 | AT1G04440.1 | 66.164 | 464 | 137 | 8 | 1 | 446 | 1 | 462 | 0.0 | 599 |
| Msa0092140 | AT5G44100.1 | 82.000 | 350 | 58 | 2 | 1 | 346 | 1 | 349 | 0.0 | 597 |
| Msa0092140 | AT5G44100.2 | 82.000 | 350 | 58 | 2 | 1 | 346 | 1 | 349 | 0.0 | 597 |
| Msa0092140 | AT4G14340.2 | 83.537 | 328 | 53 | 1 | 1 | 328 | 7 | 333 | 0.0 | 576 |
| Msa0092140 | AT5G43320.2 | 81.024 | 332 | 60 | 1 | 1 | 329 | 1 | 332 | 0.0 | 565 |
| Msa0092140 | AT5G43320.3 | 81.024 | 332 | 60 | 1 | 1 | 329 | 1 | 332 | 0.0 | 565 |
| Msa0092140 | AT1G72710.1 | 75.152 | 330 | 79 | 2 | 1 | 328 | 1 | 329 | 0.0 | 536 |
| Msa0092140 | AT4G26100.1 | 80.872 | 298 | 57 | 0 | 1 | 298 | 1 | 298 | 0.0 | 535 |
| Msa0092140 | AT5G57015.1 | 80.537 | 298 | 58 | 0 | 1 | 298 | 1 | 298 | 0.0 | 529 |
| Msa0092140 | AT2G19470.1 | 73.556 | 329 | 84 | 3 | 1 | 326 | 1 | 329 | 0.0 | 524 |
| Msa0092140 | AT4G28880.3 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.65e-176 | 499 |
| Msa0092140 | AT4G28880.2 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.65e-176 | 499 |
| Msa0092140 | AT4G28880.1 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.65e-176 | 499 |
| Msa0092140 | AT4G28880.4 | 71.160 | 319 | 92 | 0 | 1 | 319 | 1 | 319 | 7.65e-176 | 499 |
| Msa0092140 | AT4G28860.2 | 70.533 | 319 | 94 | 0 | 1 | 319 | 1 | 319 | 1.08e-174 | 494 |
| Msa0092140 | AT4G28860.1 | 74.832 | 298 | 75 | 0 | 1 | 298 | 1 | 298 | 2.02e-174 | 495 |
| Msa0092140 | AT4G08800.1 | 66.216 | 296 | 68 | 2 | 1 | 296 | 1 | 264 | 3.73e-145 | 416 |
| Msa0092140 | AT2G25760.2 | 39.286 | 280 | 155 | 4 | 9 | 273 | 107 | 386 | 7.33e-59 | 204 |
| Msa0092140 | AT2G25760.1 | 38.929 | 280 | 153 | 5 | 9 | 273 | 107 | 383 | 3.87e-56 | 197 |
| Msa0092140 | AT3G13670.1 | 35.986 | 289 | 166 | 6 | 5 | 277 | 131 | 416 | 3.68e-53 | 189 |
| Msa0092140 | AT5G18190.2 | 35.461 | 282 | 166 | 5 | 9 | 277 | 130 | 408 | 1.84e-52 | 187 |
| Msa0092140 | AT5G18190.1 | 35.461 | 282 | 166 | 5 | 9 | 277 | 130 | 408 | 1.84e-52 | 187 |
| Msa0092140 | AT3G03940.1 | 35.461 | 282 | 166 | 5 | 9 | 277 | 140 | 418 | 4.67e-52 | 186 |
| Msa0092140 | AT3G50530.1 | 28.319 | 226 | 141 | 7 | 5 | 219 | 144 | 359 | 1.10e-13 | 73.6 |
| Msa0092140 | AT5G21326.1 | 29.870 | 231 | 113 | 10 | 7 | 214 | 11 | 215 | 3.38e-13 | 71.6 |
| Msa0092140 | AT3G20410.2 | 28.384 | 229 | 143 | 8 | 9 | 230 | 91 | 305 | 5.47e-12 | 68.2 |
| Msa0092140 | AT3G20410.1 | 28.384 | 229 | 143 | 8 | 9 | 230 | 91 | 305 | 5.47e-12 | 68.2 |
| Msa0092140 | AT2G17890.1 | 25.909 | 220 | 146 | 7 | 8 | 219 | 107 | 317 | 5.77e-12 | 68.2 |
| Msa0092140 | AT1G30270.1 | 27.386 | 241 | 147 | 10 | 7 | 236 | 29 | 252 | 6.34e-12 | 67.8 |
| Msa0092140 | AT1G30270.2 | 27.386 | 241 | 147 | 10 | 7 | 236 | 29 | 252 | 6.50e-12 | 67.8 |
| Msa0092140 | AT2G38910.1 | 28.063 | 253 | 144 | 10 | 1 | 230 | 119 | 356 | 1.07e-11 | 67.4 |
| Msa0092140 | AT3G50530.2 | 26.104 | 249 | 148 | 9 | 5 | 219 | 144 | 390 | 1.42e-11 | 67.0 |
| Msa0092140 | AT4G36070.2 | 25.000 | 220 | 148 | 6 | 8 | 219 | 70 | 280 | 1.47e-11 | 67.0 |
| Msa0092140 | AT4G36070.1 | 25.000 | 220 | 148 | 6 | 8 | 219 | 70 | 280 | 1.80e-11 | 66.6 |
| Msa0092140 | AT3G61960.2 | 24.843 | 318 | 204 | 10 | 7 | 318 | 8 | 296 | 1.89e-11 | 66.6 |
| Msa0092140 | AT3G61960.1 | 24.843 | 318 | 204 | 10 | 7 | 318 | 8 | 296 | 2.02e-11 | 66.6 |
| Msa0092140 | AT4G31170.7 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0092140 | AT4G31170.6 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0092140 | AT4G31170.5 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0092140 | AT4G31170.1 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0092140 | AT4G31170.2 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0092140 | AT4G31170.3 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0092140 | AT4G31170.8 | 28.319 | 226 | 128 | 8 | 8 | 218 | 130 | 336 | 2.86e-11 | 65.5 |
| Msa0092140 | AT1G29230.1 | 27.397 | 219 | 141 | 9 | 2 | 213 | 67 | 274 | 2.91e-11 | 65.9 |
| Msa0092140 | AT1G01140.1 | 28.689 | 244 | 140 | 13 | 7 | 236 | 17 | 240 | 3.12e-11 | 65.5 |
| Msa0092140 | AT1G01140.3 | 28.689 | 244 | 140 | 13 | 7 | 236 | 17 | 240 | 3.32e-11 | 65.5 |
| Msa0092140 | AT1G50700.3 | 25.597 | 293 | 192 | 10 | 9 | 293 | 73 | 347 | 4.36e-11 | 65.1 |
| Msa0092140 | AT1G76040.3 | 27.586 | 232 | 147 | 8 | 9 | 233 | 112 | 329 | 4.65e-11 | 65.1 |
| Msa0092140 | AT1G76040.2 | 28.037 | 214 | 136 | 7 | 9 | 215 | 112 | 314 | 4.68e-11 | 65.5 |
| Msa0092140 | AT4G23650.1 | 29.167 | 216 | 131 | 7 | 9 | 215 | 78 | 280 | 6.36e-11 | 64.7 |
| Msa0092140 | AT1G50700.1 | 25.597 | 293 | 192 | 10 | 9 | 293 | 73 | 347 | 6.56e-11 | 64.7 |
| Msa0092140 | AT4G04720.2 | 23.052 | 308 | 201 | 9 | 2 | 293 | 66 | 353 | 8.09e-11 | 64.3 |
| Msa0092140 | AT4G04720.1 | 23.052 | 308 | 201 | 9 | 2 | 293 | 66 | 353 | 8.09e-11 | 64.3 |
| Msa0092140 | AT1G50700.2 | 25.357 | 280 | 184 | 9 | 9 | 281 | 73 | 334 | 8.96e-11 | 64.3 |
Find 171 sgRNAs with CRISPR-Local
Find 488 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTTCATTTCTAAATTT+TGG | 0.111875 | 1_2:-74433997 | Msa0092140:three_prime_UTR |
| TTTAAACTTGGAAGGAAAAT+TGG | 0.141980 | 1_2:-74440552 | Msa0092140:CDS |
| GTTCTTGATATTGATTATTC+TGG | 0.171244 | 1_2:-74440907 | Msa0092140:five_prime_UTR |
| AATCAAGATTAAATGCAAAT+TGG | 0.204360 | 1_2:+74440769 | None:intergenic |
| TAGAATTTGCGCGGTTCCTC+TGG | 0.208716 | 1_2:+74434743 | None:intergenic |
| CTGTTGAAAATCAATCAATT+TGG | 0.226803 | 1_2:-74440669 | Msa0092140:five_prime_UTR |
| CAAAAGTAGTTTCACAAGTT+TGG | 0.231854 | 1_2:+74441039 | None:intergenic |
| GAATGGTCACCTGAGGAATT+TGG | 0.252408 | 1_2:+74434196 | None:intergenic |
| TTGTTGGGTTTGGTGAATTT+TGG | 0.279061 | 1_2:-74440730 | Msa0092140:five_prime_UTR |
| CCGACTTCAAAGTGAATTTC+CGG | 0.284081 | 1_2:+74439693 | None:intergenic |
| TGGGATTTCAAGAAGCCTTA+TGG | 0.303360 | 1_2:-74433968 | Msa0092140:three_prime_UTR |
| ATCAAGATTAAATGCAAATT+GGG | 0.306208 | 1_2:+74440770 | None:intergenic |
| ACATACCTTCTCGAATAAAA+AGG | 0.309439 | 1_2:+74435303 | None:intergenic |
| CTCTTTAAATATGAATAATC+TGG | 0.309704 | 1_2:+74435338 | None:intergenic |
| CAAGTCATAATTACCTCTAT+TGG | 0.319914 | 1_2:+74436652 | None:intergenic |
| AAAATTGGGAGTGGTTCTTT+TGG | 0.322856 | 1_2:-74440537 | Msa0092140:CDS |
| ATTTAAAGCAACGAATGATA+TGG | 0.325797 | 1_2:-74433630 | Msa0092140:three_prime_UTR |
| TTCAGTTGGGAGAGAGATTC+GGG | 0.329420 | 1_2:-74434800 | Msa0092140:intron |
| TATTCTGGGATGATTGGTTT+TGG | 0.336900 | 1_2:-74440892 | Msa0092140:five_prime_UTR |
| AAACAAAAGATTCAAGTTCA+TGG | 0.356941 | 1_2:-74433941 | Msa0092140:three_prime_UTR |
| CAACACAATTCAACTCGATA+TGG | 0.357353 | 1_2:-74434253 | Msa0092140:CDS |
| CATAGCGTGCCGTGCCTGTA+AGG | 0.359631 | 1_2:+74437046 | None:intergenic |
| AATTCCTCAGGTGACCATTC+TGG | 0.359748 | 1_2:-74434193 | Msa0092140:CDS |
| ATTTATTCAATTATTGTAAC+CGG | 0.360177 | 1_2:-74439712 | Msa0092140:CDS |
| GTGCTAATGTATTTCTTAAG+AGG | 0.362458 | 1_2:-74436835 | Msa0092140:CDS |
| TTAAACTTGGAAGGAAAATT+GGG | 0.363410 | 1_2:-74440551 | Msa0092140:CDS |
| TCCAGCCCTCAGTCCTTGCC+AGG | 0.368539 | 1_2:+74436723 | None:intergenic |
| TTCTTGATATTGATTATTCT+GGG | 0.370586 | 1_2:-74440906 | Msa0092140:five_prime_UTR |
| AGGGAAAATAAGAACCTTAC+AGG | 0.372840 | 1_2:-74437060 | Msa0092140:CDS |
| TTTCAGTTGGGAGAGAGATT+CGG | 0.379707 | 1_2:-74434801 | Msa0092140:intron |
| ATTGATTATTCTGGGATGAT+TGG | 0.385224 | 1_2:-74440898 | Msa0092140:five_prime_UTR |
| GTCATGGTCATCGACCTTCT+TGG | 0.387600 | 1_2:-74439749 | Msa0092140:CDS |
| CGACCTTCTTGGACCCAGTC+TGG | 0.390528 | 1_2:-74439738 | Msa0092140:CDS |
| TTTGAATTTGTCCACAATCA+AGG | 0.390569 | 1_2:-74440630 | Msa0092140:five_prime_UTR |
| TTGGGGTGAAGGAATGTAGT+TGG | 0.395154 | 1_2:-74440864 | Msa0092140:five_prime_UTR |
| ATGATTCTTCAAGGAGGAAC+TGG | 0.404829 | 1_2:-74439815 | Msa0092140:CDS |
| ACCTCAACGAACGGCAATAG+TGG | 0.405356 | 1_2:+74435372 | None:intergenic |
| CCTCAACTCCAAACCATTTG+AGG | 0.409202 | 1_2:+74439783 | None:intergenic |
| CGGAGGAAGTGGGTCTTGTT+TGG | 0.413082 | 1_2:+74441069 | None:intergenic |
| GCTTTGAGCTCCTCACTATC+AGG | 0.414666 | 1_2:-74434045 | Msa0092140:CDS |
| GAGATTCGGGAGAAATTATC+TGG | 0.415618 | 1_2:-74434787 | Msa0092140:CDS |
| CTCAAATGGTTTGGAGTTGA+GGG | 0.423483 | 1_2:-74439782 | Msa0092140:CDS |
| TCAGCTGTTAATATACAAAC+TGG | 0.426788 | 1_2:-74440398 | Msa0092140:intron |
| GCAAGTGTCAACACCCATCT+TGG | 0.433561 | 1_2:-74437024 | Msa0092140:CDS |
| ATAGGGATCTTCAGACTCAT+AGG | 0.434481 | 1_2:-74437383 | Msa0092140:CDS |
| TTTATCATGGATCATGTGAT+TGG | 0.443086 | 1_2:-74440582 | Msa0092140:exon |
| CCTCAAATGGTTTGGAGTTG+AGG | 0.448526 | 1_2:-74439783 | Msa0092140:CDS |
| TTGCCGTTCGTTGAGGTTTG+AGG | 0.451388 | 1_2:-74435366 | Msa0092140:CDS |
| TGGATATGCAATGTTATTTG+TGG | 0.454735 | 1_2:-74433723 | Msa0092140:three_prime_UTR |
| ATATCGAGTTGAATTGTGTT+GGG | 0.458129 | 1_2:+74434255 | None:intergenic |
| ACAAAGTCGAAGGGATGATC+TGG | 0.458546 | 1_2:-74436872 | Msa0092140:CDS |
| TTTCGCAAGGCCGAAGTCAA+TGG | 0.458863 | 1_2:+74437410 | None:intergenic |
| ATTGAATAAATCTTCCAGAC+TGG | 0.465309 | 1_2:+74439724 | None:intergenic |
| CATAAAGCACAAAAGATTCC+AGG | 0.469567 | 1_2:-74435006 | Msa0092140:intron |
| AAACTGTATATGATTCTTCA+AGG | 0.471640 | 1_2:-74439824 | Msa0092140:CDS |
| GTGGAAAGTTTAAACTTGGA+AGG | 0.472881 | 1_2:-74440560 | Msa0092140:CDS |
| CTCCAAACCATTTGAGGTGG+GGG | 0.473526 | 1_2:+74439789 | None:intergenic |
| TTGGAGATGAACGGAGGAAG+TGG | 0.485546 | 1_2:+74441058 | None:intergenic |
| GGCAGGATGGCCACAAGTGG+GGG | 0.486821 | 1_2:-74434172 | Msa0092140:CDS |
| ATAGTGAAGCTGTGGATGCC+TGG | 0.493685 | 1_2:+74439853 | None:intergenic |
| TTGAATTTGTCCACAATCAA+GGG | 0.497388 | 1_2:-74440629 | Msa0092140:five_prime_UTR |
| TCTTCCCTGGCAAGGACTGA+GGG | 0.499281 | 1_2:-74436728 | Msa0092140:CDS |
| AGAAGGTATCTGTGGTGTGC+TGG | 0.499832 | 1_2:+74441000 | None:intergenic |
| TTGTGGCCATCCTGCCAGAA+TGG | 0.501550 | 1_2:+74434179 | None:intergenic |
| CCCTGGCAAGGACTGAGGGC+TGG | 0.502421 | 1_2:-74436724 | Msa0092140:CDS |
| GTCAACACCCATCTTGGAAT+CGG | 0.505171 | 1_2:-74437018 | Msa0092140:intron |
| ATCATCATAAGTCCTATGTC+TGG | 0.505727 | 1_2:+74434699 | None:intergenic |
| CATATCGAGTTGAATTGTGT+TGG | 0.505789 | 1_2:+74434254 | None:intergenic |
| ATTGGTGGAAAGTTTAAACT+TGG | 0.508093 | 1_2:-74440564 | Msa0092140:CDS |
| TTGAATTCAGCCCTTGATTG+TGG | 0.510798 | 1_2:+74440619 | None:intergenic |
| AGAGGAGGTGGCTGTTAAGC+TGG | 0.511655 | 1_2:-74440375 | Msa0092140:intron |
| CAGGTGTATGCCATTGACTT+CGG | 0.512497 | 1_2:-74437420 | Msa0092140:CDS |
| AGAATTTGCGCGGTTCCTCT+GGG | 0.513807 | 1_2:+74434744 | None:intergenic |
| CTGGCAGGATGGCCACAAGT+GGG | 0.513957 | 1_2:-74434174 | Msa0092140:CDS |
| AGGGATGATCTGGAATCTCT+TGG | 0.515030 | 1_2:-74436862 | Msa0092140:CDS |
| GAAGGTATCAACTCCAATAG+AGG | 0.515426 | 1_2:-74436665 | Msa0092140:intron |
| GTCTTCCCTGGCAAGGACTG+AGG | 0.516641 | 1_2:-74436729 | Msa0092140:CDS |
| TCAATATCAAGAACAACAAA+GGG | 0.519549 | 1_2:+74440916 | None:intergenic |
| ATCAATATCAAGAACAACAA+AGG | 0.520586 | 1_2:+74440915 | None:intergenic |
| AATTGTCTGGCTTTATGTCT+CGG | 0.521040 | 1_2:+74439507 | None:intergenic |
| ATCACTTACCGATTCCAAGA+TGG | 0.522339 | 1_2:+74437010 | None:intergenic |
| TCCACTATTGCCGTTCGTTG+AGG | 0.522705 | 1_2:-74435373 | Msa0092140:CDS |
| CAGAGTAGTGGCAGCTCTAG+AGG | 0.523385 | 1_2:-74435148 | Msa0092140:CDS |
| TCACTTACCGATTCCAAGAT+GGG | 0.528445 | 1_2:+74437011 | None:intergenic |
| GGGCTGAATTCAATATTTGA+AGG | 0.528537 | 1_2:-74440609 | Msa0092140:five_prime_UTR |
| AGGCCCATCAGAAAATTGTC+TGG | 0.529417 | 1_2:+74439494 | None:intergenic |
| AACTCCAAACCATTTGAGGT+GGG | 0.533255 | 1_2:+74439787 | None:intergenic |
| TGGCAGGATGGCCACAAGTG+GGG | 0.534769 | 1_2:-74434173 | Msa0092140:CDS |
| CTCTATGTGCGCCAGATGGA+CGG | 0.535759 | 1_2:+74434149 | None:intergenic |
| CTTGATTTGCTTTACGTCCG+AGG | 0.536022 | 1_2:+74439474 | None:intergenic |
| TTGTAACGACAGCATGGCAC+TGG | 0.538838 | 1_2:-74435060 | Msa0092140:intron |
| TCAAGATTAAATGCAAATTG+GGG | 0.540099 | 1_2:+74440771 | None:intergenic |
| ATCATGGATCATGTGATTGG+TGG | 0.540398 | 1_2:-74440579 | Msa0092140:CDS |
| TTGAAACATCCTCATGAATG+AGG | 0.540842 | 1_2:+74440817 | None:intergenic |
| TATACAAACTGGAGAGGAGG+TGG | 0.543406 | 1_2:-74440387 | Msa0092140:CDS |
| AATCTTCTGAAGCAATCTGA+GGG | 0.543803 | 1_2:+74433858 | None:intergenic |
| TTGAATAAATCTTCCAGACT+GGG | 0.547330 | 1_2:+74439725 | None:intergenic |
| TGAATAATTCCTCATTCATG+AGG | 0.551215 | 1_2:-74440826 | Msa0092140:five_prime_UTR |
| TAATGTATTTCTTAAGAGGA+AGG | 0.552033 | 1_2:-74436831 | Msa0092140:intron |
| TAGTGGCAGCTCTAGAGGAC+GGG | 0.553447 | 1_2:-74435143 | Msa0092140:intron |
| TCTGGCAGGATGGCCACAAG+TGG | 0.554722 | 1_2:-74434175 | Msa0092140:CDS |
| GTAGTGGCAGCTCTAGAGGA+CGG | 0.557752 | 1_2:-74435144 | Msa0092140:CDS |
| GTTGAATACATGCATTCAAG+AGG | 0.558652 | 1_2:-74439539 | Msa0092140:CDS |
| TCATCAAAGCCAAATTCCTC+AGG | 0.559975 | 1_2:-74434205 | Msa0092140:CDS |
| GAATAAGGTAGGAAAAGAGA+AGG | 0.561006 | 1_2:+74440983 | None:intergenic |
| ATAAGGCTTCTTGAAATCCC+AGG | 0.563366 | 1_2:+74433970 | None:intergenic |
| CAACTCCAAACCATTTGAGG+TGG | 0.572196 | 1_2:+74439786 | None:intergenic |
| TCCAGGAATCTGTGAAGACC+AGG | 0.574379 | 1_2:-74439871 | Msa0092140:intron |
| CCTCAGGTGACCATTCTGGC+AGG | 0.574601 | 1_2:-74434189 | Msa0092140:CDS |
| TTCACAAGTTTGGAGATGAA+CGG | 0.574856 | 1_2:+74441049 | None:intergenic |
| AAATCTTCTGAAGCAATCTG+AGG | 0.574956 | 1_2:+74433857 | None:intergenic |
| AGGTGACCATTCTGGCAGGA+TGG | 0.577708 | 1_2:-74434185 | Msa0092140:CDS |
| ACTATCAGGAAGTAATCTCA+AGG | 0.579172 | 1_2:-74434031 | Msa0092140:exon |
| TGGTGTGTTCACCGTGATGA+GGG | 0.579905 | 1_2:+74434719 | None:intergenic |
| CTCATAGGCACATACCGTAC+AGG | 0.580718 | 1_2:-74437368 | Msa0092140:intron |
| AGACAGACTTACTAATTGAT+CGG | 0.581760 | 1_2:+74439658 | None:intergenic |
| CTTGGAAGGAAAATTGGGAG+TGG | 0.582542 | 1_2:-74440546 | Msa0092140:CDS |
| GGGGATCTAGAAATGATGTC+GGG | 0.584750 | 1_2:+74433878 | None:intergenic |
| CTTCCAGACTGGGTCCAAGA+AGG | 0.585280 | 1_2:+74439735 | None:intergenic |
| GATCACAAAACCAACCTGTA+CGG | 0.586380 | 1_2:+74437354 | None:intergenic |
| GGACAAATTCAAACAGAGGA+AGG | 0.587793 | 1_2:+74440640 | None:intergenic |
| GAGATTACTTCCTGATAGTG+AGG | 0.590566 | 1_2:+74434035 | None:intergenic |
| CCAGCCCTCAGTCCTTGCCA+GGG | 0.593406 | 1_2:+74436724 | None:intergenic |
| ACTCCAAACCATTTGAGGTG+GGG | 0.595250 | 1_2:+74439788 | None:intergenic |
| TGAACTCTATGTGCGCCAGA+TGG | 0.596034 | 1_2:+74434145 | None:intergenic |
| ATTTGGCTTTGATGATACCA+TGG | 0.597247 | 1_2:+74434213 | None:intergenic |
| TGGTGGCAGAACAAAGTCGA+AGG | 0.597531 | 1_2:-74436882 | Msa0092140:intron |
| GCTTGTTTCGTATCATACAC+AGG | 0.597643 | 1_2:+74434121 | None:intergenic |
| ACGGTGAACACACCAGACAT+AGG | 0.599179 | 1_2:-74434711 | Msa0092140:CDS |
| GCTCGCAATGGGTCTATGAG+AGG | 0.601655 | 1_2:-74434091 | Msa0092140:CDS |
| AGGGGATCTAGAAATGATGT+CGG | 0.602938 | 1_2:+74433877 | None:intergenic |
| CCGGAAATTCACTTTGAAGT+CGG | 0.603149 | 1_2:-74439693 | Msa0092140:CDS |
| CTGGTGTGTTCACCGTGATG+AGG | 0.605762 | 1_2:+74434718 | None:intergenic |
| AAATAATAATAATTCAGCAA+TGG | 0.606102 | 1_2:+74433543 | None:intergenic |
| AACGAATGATATGGTGCTGT+AGG | 0.611429 | 1_2:-74433621 | Msa0092140:three_prime_UTR |
| AGGAGCTCAAAGCTCCTCAG+AGG | 0.611695 | 1_2:+74434055 | None:intergenic |
| AGGAAAAGAGAAGGTATCTG+TGG | 0.614878 | 1_2:+74440992 | None:intergenic |
| ACATAGGACTTATGATGATG+TGG | 0.615199 | 1_2:-74434695 | Msa0092140:intron |
| ACGACAGCATGGCACTGGCA+AGG | 0.615258 | 1_2:-74435055 | Msa0092140:intron |
| ATATTAATGAATTACCATTG+AGG | 0.618281 | 1_2:-74433918 | Msa0092140:three_prime_UTR |
| TTGAAGTATCCACAGAGTAG+TGG | 0.619683 | 1_2:-74435160 | Msa0092140:CDS |
| TTTGACTCATAGTGAAGCTG+TGG | 0.620621 | 1_2:+74439845 | None:intergenic |
| CGATAAAATCAGTGAGACGA+AGG | 0.621170 | 1_2:-74436683 | Msa0092140:CDS |
| TGTCCTCAAACCTCAACGAA+CGG | 0.628598 | 1_2:+74435363 | None:intergenic |
| CTATCAGGAAGTAATCTCAA+GGG | 0.630386 | 1_2:-74434030 | Msa0092140:exon |
| TGGAGATGAACGGAGGAAGT+GGG | 0.631012 | 1_2:+74441059 | None:intergenic |
| TCATGCCATTGTGACCTCAA+TGG | 0.631482 | 1_2:+74433904 | None:intergenic |
| TGAGGGAGAGTACAATGTCA+TGG | 0.631924 | 1_2:-74439765 | Msa0092140:CDS |
| AAATAAGAACCTTACAGGCA+CGG | 0.632067 | 1_2:-74437055 | Msa0092140:CDS |
| GATGAGGGCTAGAATTTGCG+CGG | 0.634849 | 1_2:+74434734 | None:intergenic |
| TAATATACAAACTGGAGAGG+AGG | 0.635465 | 1_2:-74440390 | Msa0092140:CDS |
| TGTGGTGTGCTGGATGAAAG+AGG | 0.645151 | 1_2:+74441010 | None:intergenic |
| AAGCAGTTCAAGAAGAGCCA+TGG | 0.646616 | 1_2:-74434230 | Msa0092140:CDS |
| ACAGTGAATGTAGTTTAACA+AGG | 0.650280 | 1_2:-74433680 | Msa0092140:three_prime_UTR |
| CTAGAGCTGCCACTACTCTG+TGG | 0.650464 | 1_2:+74435151 | None:intergenic |
| TTGTGGACAAATTCAAACAG+AGG | 0.650537 | 1_2:+74440636 | None:intergenic |
| AAGTATGATACAAACTCAGA+GGG | 0.655305 | 1_2:+74435395 | None:intergenic |
| TGTTAATATACAAACTGGAG+AGG | 0.660638 | 1_2:-74440393 | Msa0092140:CDS |
| GAAGTATGATACAAACTCAG+AGG | 0.660966 | 1_2:+74435394 | None:intergenic |
| GGTGGCAGAACAAAGTCGAA+GGG | 0.669079 | 1_2:-74436881 | Msa0092140:intron |
| TTGTTGAAGCATTCACCCAG+AGG | 0.669158 | 1_2:-74434759 | Msa0092140:CDS |
| CAAGATTAAATGCAAATTGG+GGG | 0.673478 | 1_2:+74440772 | None:intergenic |
| AATTACCATTGAGGTCACAA+TGG | 0.674062 | 1_2:-74433909 | Msa0092140:three_prime_UTR |
| CCTGCCAGAATGGTCACCTG+AGG | 0.679602 | 1_2:+74434189 | None:intergenic |
| GCAAATTCTAGCCCTCATCA+CGG | 0.684087 | 1_2:-74434730 | Msa0092140:CDS |
| ACAAGTTTGGAGATGAACGG+AGG | 0.694451 | 1_2:+74441052 | None:intergenic |
| AGCTCCTCAGAGGATCATCA+CGG | 0.696325 | 1_2:+74434065 | None:intergenic |
| ATCTTCTGAAGCAATCTGAG+GGG | 0.701243 | 1_2:+74433859 | None:intergenic |
| GCCACCGTGATGATCCTCTG+AGG | 0.725239 | 1_2:-74434069 | Msa0092140:CDS |
| CTGTATATGATTCTTCAAGG+AGG | 0.728537 | 1_2:-74439821 | Msa0092140:CDS |
| TCCTCAGAGGATCATCACGG+TGG | 0.751052 | 1_2:+74434068 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTAAAAACAAAAAAAA+GGG | + | chr1_2:74434215-74434234 | None:intergenic | 10.0% |
| !! | ATGAATTAAAAACAAAAAAA+AGG | + | chr1_2:74434216-74434235 | None:intergenic | 10.0% |
| !!! | TTGTTTTTAATTCATTTATT+TGG | - | chr1_2:74434221-74434240 | Msa0092140:CDS | 10.0% |
| !!! | TGTTTTTAATTCATTTATTT+GGG | - | chr1_2:74434222-74434241 | Msa0092140:CDS | 10.0% |
| !! | TAATCATATATAGATAATTT+AGG | + | chr1_2:74435357-74435376 | None:intergenic | 10.0% |
| !! | ATTAAATATAAGAAAATCTT+GGG | - | chr1_2:74435615-74435634 | Msa0092140:intron | 10.0% |
| !! | CCATAAAATAAAATAAAAAA+TGG | + | chr1_2:74437130-74437149 | None:intergenic | 10.0% |
| !!! | CCATTTTTTATTTTATTTTA+TGG | - | chr1_2:74437127-74437146 | Msa0092140:intron | 10.0% |
| !! | AAATGAATTATTACATTATT+AGG | - | chr1_2:74437754-74437773 | Msa0092140:intron | 10.0% |
| !!! | TACTTTTCATTTTTAAATTA+CGG | - | chr1_2:74438308-74438327 | Msa0092140:intron | 10.0% |
| !!! | TTTATGAAAATAACATTTTA+GGG | + | chr1_2:74439175-74439194 | None:intergenic | 10.0% |
| !!! | TTTTATGAAAATAACATTTT+AGG | + | chr1_2:74439176-74439195 | None:intergenic | 10.0% |
| !!! | TTTTAGATTTGTAAATAAAA+CGG | + | chr1_2:74440235-74440254 | None:intergenic | 10.0% |
| !!! | TTTTATGAATTTCTAGAATT+TGG | - | chr1_2:74434398-74434417 | Msa0092140:intron | 15.0% |
| !!! | ATGTTTTAAATGTTAACTTT+TGG | - | chr1_2:74434549-74434568 | Msa0092140:intron | 15.0% |
| !! | ATTTATTCAATTATTGTAAC+CGG | - | chr1_2:74434983-74435002 | Msa0092140:intron | 15.0% |
| !! | TAATATGGTTCTTTATATAA+TGG | - | chr1_2:74435081-74435100 | Msa0092140:intron | 15.0% |
| !! | AAAACATAATAGCTTAAAAT+GGG | + | chr1_2:74435441-74435460 | None:intergenic | 15.0% |
| !! | AAAAACATAATAGCTTAAAA+TGG | + | chr1_2:74435442-74435461 | None:intergenic | 15.0% |
| !! | GATTAAATATAAGAAAATCT+TGG | - | chr1_2:74435614-74435633 | Msa0092140:intron | 15.0% |
| !! | TATTATATTGATATTGATAG+CGG | - | chr1_2:74436204-74436223 | Msa0092140:intron | 15.0% |
| !!! | TCATAGTAATATTTACTTTT+TGG | - | chr1_2:74436661-74436680 | Msa0092140:intron | 15.0% |
| !!! | CATAGTAATATTTACTTTTT+GGG | - | chr1_2:74436662-74436681 | Msa0092140:intron | 15.0% |
| !!! | TTTTATTTTATGGATGTTAT+AGG | - | chr1_2:74437137-74437156 | Msa0092140:intron | 15.0% |
| !! | CTAAAATATTATCTACATTT+AGG | + | chr1_2:74437525-74437544 | None:intergenic | 15.0% |
| !!! | ATATTTTTCACTAATCAATT+TGG | + | chr1_2:74438657-74438676 | None:intergenic | 15.0% |
| !! | AAAATGACTAATAAAAACTA+AGG | - | chr1_2:74438720-74438739 | Msa0092140:intron | 15.0% |
| !! | GATTATGTAATGTTATATTA+TGG | + | chr1_2:74438812-74438831 | None:intergenic | 15.0% |
| !! | ATCATCATACATTAATTATT+AGG | - | chr1_2:74438829-74438848 | Msa0092140:intron | 15.0% |
| !!! | TACTTTTCTTTTTCAAATTA+CGG | + | chr1_2:74439107-74439126 | None:intergenic | 15.0% |
| !!! | ATTTTTAATTGCTATGAATA+TGG | + | chr1_2:74441117-74441136 | None:intergenic | 15.0% |
| !! | AAATAATAATAATTCAGCAA+TGG | + | chr1_2:74441155-74441174 | None:intergenic | 15.0% |
| !!! | TTTTTTGGAAAAACAGAATA+AGG | + | chr1_2:74433730-74433749 | None:intergenic | 20.0% |
| !!! | TTCTTGATATTGATTATTCT+GGG | - | chr1_2:74433789-74433808 | Msa0092140:three_prime_UTR | 20.0% |
| !! | ATCAAGATTAAATGCAAATT+GGG | + | chr1_2:74433928-74433947 | None:intergenic | 20.0% |
| !! | AATCAAGATTAAATGCAAAT+TGG | + | chr1_2:74433929-74433948 | None:intergenic | 20.0% |
| !!! | TTAGATTGTGAATTTTTGTT+GGG | - | chr1_2:74433950-74433969 | Msa0092140:three_prime_UTR | 20.0% |
| !!! | GTTGATTTTTTTTTTCATGT+TGG | - | chr1_2:74434420-74434439 | Msa0092140:intron | 20.0% |
| !! | GATATTATCTGAACTATTTA+GGG | - | chr1_2:74434461-74434480 | Msa0092140:intron | 20.0% |
| !!! | TTTTTTTTGTTATCAGTTAG+TGG | - | chr1_2:74434735-74434754 | Msa0092140:CDS | 20.0% |
| !!! | AAGCTATTATGTTTTTTCTT+TGG | - | chr1_2:74435446-74435465 | Msa0092140:intron | 20.0% |
| !!! | ACAAGATTCTATCATTTTTT+CGG | + | chr1_2:74436033-74436052 | None:intergenic | 20.0% |
| !!! | TCTTTATTTATATCAAAGAC+AGG | + | chr1_2:74436428-74436447 | None:intergenic | 20.0% |
| !!! | TACAAAATGAAGTCTTTTAA+AGG | + | chr1_2:74437008-74437027 | None:intergenic | 20.0% |
| !! | AGCAATTATTAAGCAATATA+AGG | + | chr1_2:74437421-74437440 | None:intergenic | 20.0% |
| !! | AACTAAAACAATATCAAACT+TGG | - | chr1_2:74437553-74437572 | Msa0092140:intron | 20.0% |
| !! | CAAAATATATTGAGATCAAT+GGG | + | chr1_2:74437590-74437609 | None:intergenic | 20.0% |
| !! | ACAAAATATATTGAGATCAA+TGG | + | chr1_2:74437591-74437610 | None:intergenic | 20.0% |
| !!! | ATATTTTTCTTCTTTGCTTA+GGG | - | chr1_2:74437616-74437635 | Msa0092140:intron | 20.0% |
| !!! | GTTTCTTGTTTATTAGAAAT+TGG | - | chr1_2:74438153-74438172 | Msa0092140:intron | 20.0% |
| !!! | ATCCAAATTATTTAAGATGA+TGG | + | chr1_2:74438467-74438486 | None:intergenic | 20.0% |
| !!! | TAAAAACTAAGGTTTGTTTT+TGG | - | chr1_2:74438731-74438750 | Msa0092140:intron | 20.0% |
| !!! | TGAAGGTTTTGAATTAAAAT+GGG | + | chr1_2:74438782-74438801 | None:intergenic | 20.0% |
| !!! | TTGAAGGTTTTGAATTAAAA+TGG | + | chr1_2:74438783-74438802 | None:intergenic | 20.0% |
| !! | TATATTATGGAAAAACTTGA+AGG | + | chr1_2:74438799-74438818 | None:intergenic | 20.0% |
| !!! | TTACGTGCTTTTATAAAAAT+AGG | - | chr1_2:74439260-74439279 | Msa0092140:intron | 20.0% |
| !! | CTCTTTAAATATGAATAATC+TGG | + | chr1_2:74439360-74439379 | None:intergenic | 20.0% |
| !!! | TTGTTGTTTTACATTTTTGT+TGG | - | chr1_2:74439596-74439615 | Msa0092140:intron | 20.0% |
| !! | TTATGTGAAAAAACATGAAA+TGG | + | chr1_2:74440125-74440144 | None:intergenic | 20.0% |
| !! | ATATTTACAAATGGTAAACA+AGG | + | chr1_2:74440172-74440191 | None:intergenic | 20.0% |
| !! | CTAGTACAAATATTTACAAA+TGG | + | chr1_2:74440181-74440200 | None:intergenic | 20.0% |
| !!! | TGTTCTTCATTTCTAAATTT+TGG | - | chr1_2:74440698-74440717 | Msa0092140:five_prime_UTR | 20.0% |
| !! | ATATTAATGAATTACCATTG+AGG | - | chr1_2:74440777-74440796 | Msa0092140:five_prime_UTR | 20.0% |
| ! | TCAATATCAAGAACAACAAA+GGG | + | chr1_2:74433782-74433801 | None:intergenic | 25.0% |
| ! | ATCAATATCAAGAACAACAA+AGG | + | chr1_2:74433783-74433802 | None:intergenic | 25.0% |
| !! | GTTCTTGATATTGATTATTC+TGG | - | chr1_2:74433788-74433807 | Msa0092140:three_prime_UTR | 25.0% |
| ! | TCAAGATTAAATGCAAATTG+GGG | + | chr1_2:74433927-74433946 | None:intergenic | 25.0% |
| !! | GTTAGATTGTGAATTTTTGT+TGG | - | chr1_2:74433949-74433968 | Msa0092140:three_prime_UTR | 25.0% |
| !!! | GTTAGGATTTTTATTGATTC+AGG | - | chr1_2:74433994-74434013 | Msa0092140:three_prime_UTR | 25.0% |
| ! | CTGTTGAAAATCAATCAATT+TGG | - | chr1_2:74434026-74434045 | Msa0092140:exon | 25.0% |
| !! | ATTTGAAGGTGATTTTATCA+TGG | - | chr1_2:74434100-74434119 | Msa0092140:CDS | 25.0% |
| ! | TTTAAACTTGGAAGGAAAAT+TGG | - | chr1_2:74434143-74434162 | Msa0092140:CDS | 25.0% |
| ! | TTAAACTTGGAAGGAAAATT+GGG | - | chr1_2:74434144-74434163 | Msa0092140:CDS | 25.0% |
| !!! | TTGGTTCTAGATGTATTATT+AGG | - | chr1_2:74434439-74434458 | Msa0092140:intron | 25.0% |
| ! | GGATATTATCTGAACTATTT+AGG | - | chr1_2:74434460-74434479 | Msa0092140:intron | 25.0% |
| ! | ATATCATTTATCGAAGGAAA+TGG | - | chr1_2:74434518-74434537 | Msa0092140:intron | 25.0% |
| !! | AATGTTAACTTTTGGTCAAT+AGG | - | chr1_2:74434557-74434576 | Msa0092140:intron | 25.0% |
| ! | AAACTGTATATGATTCTTCA+AGG | - | chr1_2:74434871-74434890 | Msa0092140:intron | 25.0% |
| ! | TTGGCGAAAGTTATTTAATA+TGG | - | chr1_2:74435066-74435085 | Msa0092140:intron | 25.0% |
| !! | AAAAAACAAACAAAAGTGTG+AGG | + | chr1_2:74435124-74435143 | None:intergenic | 25.0% |
| ! | TTTAATTCCTTTGTCTATTG+TGG | - | chr1_2:74435285-74435304 | Msa0092140:intron | 25.0% |
| ! | TTAATTCCTTTGTCTATTGT+GGG | - | chr1_2:74435286-74435305 | Msa0092140:intron | 25.0% |
| ! | ACCTAGAAAAGAATTATGAT+AGG | - | chr1_2:74435383-74435402 | Msa0092140:CDS | 25.0% |
| ! | CCTAGAAAAGAATTATGATA+GGG | - | chr1_2:74435384-74435403 | Msa0092140:CDS | 25.0% |
| !! | TGTCATATATTTTCTTGTGT+GGG | - | chr1_2:74435507-74435526 | Msa0092140:intron | 25.0% |
| ! | AGAGTCTAAATAGGAATAAA+TGG | - | chr1_2:74435548-74435567 | Msa0092140:intron | 25.0% |
| ! | TTCAGTTATTTGTGTTTGAA+AGG | - | chr1_2:74435830-74435849 | Msa0092140:intron | 25.0% |
| !!! | AACATCAACTTTTTTTACCA+GGG | + | chr1_2:74436082-74436101 | None:intergenic | 25.0% |
| !!! | TAACATCAACTTTTTTTACC+AGG | + | chr1_2:74436083-74436102 | None:intergenic | 25.0% |
| !!! | AACTTAGGATTTTAAAGGAA+AGG | + | chr1_2:74436586-74436605 | None:intergenic | 25.0% |
| ! | ATGAAAATAAGCAAAATGAC+TGG | + | chr1_2:74436611-74436630 | None:intergenic | 25.0% |
| !! | TATTTTCATATCACGTCTAT+TGG | - | chr1_2:74436622-74436641 | Msa0092140:intron | 25.0% |
| !!! | AGTAATATTTACTTTTTGGG+AGG | - | chr1_2:74436665-74436684 | Msa0092140:intron | 25.0% |
| !!! | GTAATATTTACTTTTTGGGA+GGG | - | chr1_2:74436666-74436685 | Msa0092140:CDS | 25.0% |
| ! | TCAGTTTATTAATTTCATCG+TGG | - | chr1_2:74436878-74436897 | Msa0092140:intron | 25.0% |
| ! | ATGTTATAATTAGCACTGTA+TGG | + | chr1_2:74436912-74436931 | None:intergenic | 25.0% |
| !!! | AGTCTTTTAAAGGATACAAA+CGG | + | chr1_2:74436998-74437017 | None:intergenic | 25.0% |
| !! | AAAGCAATTGGTTTCTTTAA+GGG | - | chr1_2:74437043-74437062 | Msa0092140:CDS | 25.0% |
| !!! | CAGTCGATTATATTTAGTTT+TGG | + | chr1_2:74437230-74437249 | None:intergenic | 25.0% |
| !!! | GGTTTTGTGATCATAATTTT+AGG | - | chr1_2:74437352-74437371 | Msa0092140:intron | 25.0% |
| !! | TTTGTGATCATAATTTTAGG+AGG | - | chr1_2:74437355-74437374 | Msa0092140:intron | 25.0% |
| !!! | TTGTGATCATAATTTTAGGA+GGG | - | chr1_2:74437356-74437375 | Msa0092140:intron | 25.0% |
| ! | TTAGGTTAAGCTAAACAATT+AGG | - | chr1_2:74437386-74437405 | Msa0092140:CDS | 25.0% |
| !!! | TGTTATGCCATTTTTTTTAC+TGG | - | chr1_2:74437490-74437509 | Msa0092140:intron | 25.0% |
| ! | GTGATTTCCAGTAAAAAAAA+TGG | + | chr1_2:74437500-74437519 | None:intergenic | 25.0% |
| !! | GATATTTTTCTTCTTTGCTT+AGG | - | chr1_2:74437615-74437634 | Msa0092140:intron | 25.0% |
| ! | ATATACTAATTGTGTGATTG+TGG | - | chr1_2:74437793-74437812 | Msa0092140:intron | 25.0% |
| ! | TAATGTATTTCTTAAGAGGA+AGG | - | chr1_2:74437864-74437883 | Msa0092140:intron | 25.0% |
| ! | AGCCATCATCTTAAATAATT+TGG | - | chr1_2:74438462-74438481 | Msa0092140:intron | 25.0% |
| !!! | CATTTTGGTCTCTAAATATA+TGG | - | chr1_2:74438550-74438569 | Msa0092140:intron | 25.0% |
| ! | AAGCAACTTTCAAAAATTAG+TGG | - | chr1_2:74439010-74439029 | Msa0092140:intron | 25.0% |
| ! | AGCAACTTTCAAAAATTAGT+GGG | - | chr1_2:74439011-74439030 | Msa0092140:intron | 25.0% |
| ! | AATAAATTAAGTGTGATCAG+TGG | + | chr1_2:74439062-74439081 | None:intergenic | 25.0% |
| !! | TGCATTTTCCACATTATTTT+GGG | + | chr1_2:74439420-74439439 | None:intergenic | 25.0% |
| !! | ATGCATTTTCCACATTATTT+TGG | + | chr1_2:74439421-74439440 | None:intergenic | 25.0% |
| !! | AGTATATTTTGCTGGAAATT+CGG | - | chr1_2:74439443-74439462 | Msa0092140:intron | 25.0% |
| !!! | AATTTGACTATGTTTTTGAC+TGG | - | chr1_2:74439506-74439525 | Msa0092140:CDS | 25.0% |
| ! | AGCTGAATAAGAATGAAATT+CGG | - | chr1_2:74439725-74439744 | Msa0092140:CDS | 25.0% |
| ! | GGTAAACAAGGTAAAAAAAA+GGG | + | chr1_2:74440160-74440179 | None:intergenic | 25.0% |
| ! | TGGTAAACAAGGTAAAAAAA+AGG | + | chr1_2:74440161-74440180 | None:intergenic | 25.0% |
| !!! | ATCTTTTGTTTCTTTCCATA+AGG | + | chr1_2:74440745-74440764 | None:intergenic | 25.0% |
| !! | AAACAAAAGATTCAAGTTCA+TGG | - | chr1_2:74440754-74440773 | Msa0092140:five_prime_UTR | 25.0% |
| !! | ATTTAAAGCAACGAATGATA+TGG | - | chr1_2:74441065-74441084 | Msa0092140:five_prime_UTR | 25.0% |
| CAAAAGTAGTTTCACAAGTT+TGG | + | chr1_2:74433659-74433678 | None:intergenic | 30.0% | |
| TTGGAAAAACAGAATAAGGT+AGG | + | chr1_2:74433726-74433745 | None:intergenic | 30.0% | |
| !! | ATTGATTATTCTGGGATGAT+TGG | - | chr1_2:74433797-74433816 | Msa0092140:three_prime_UTR | 30.0% |
| !!! | ATGATTGGTTTTGGTTCTTT+TGG | - | chr1_2:74433812-74433831 | Msa0092140:three_prime_UTR | 30.0% |
| !!! | TGATTGGTTTTGGTTCTTTT+GGG | - | chr1_2:74433813-74433832 | Msa0092140:three_prime_UTR | 30.0% |
| TGAATAATTCCTCATTCATG+AGG | - | chr1_2:74433869-74433888 | Msa0092140:three_prime_UTR | 30.0% | |
| CAAGATTAAATGCAAATTGG+GGG | + | chr1_2:74433926-74433945 | None:intergenic | 30.0% | |
| ! | TTGTGAATTTTTGTTGGGTT+TGG | - | chr1_2:74433955-74433974 | Msa0092140:three_prime_UTR | 30.0% |
| !! | GTGAATTTTGGAAGAAAGTT+AGG | - | chr1_2:74433977-74433996 | Msa0092140:three_prime_UTR | 30.0% |
| TTTGAATTTGTCCACAATCA+AGG | - | chr1_2:74434065-74434084 | Msa0092140:CDS | 30.0% | |
| TTGAATTTGTCCACAATCAA+GGG | - | chr1_2:74434066-74434085 | Msa0092140:CDS | 30.0% | |
| TTTATCATGGATCATGTGAT+TGG | - | chr1_2:74434113-74434132 | Msa0092140:CDS | 30.0% | |
| ATTGGTGGAAAGTTTAAACT+TGG | - | chr1_2:74434131-74434150 | Msa0092140:CDS | 30.0% | |
| TCAGCTGTTAATATACAAAC+TGG | - | chr1_2:74434297-74434316 | Msa0092140:intron | 30.0% | |
| TGTTAATATACAAACTGGAG+AGG | - | chr1_2:74434302-74434321 | Msa0092140:intron | 30.0% | |
| TCTTGAAATGAGATGTGAAA+TGG | - | chr1_2:74434592-74434611 | Msa0092140:intron | 30.0% | |
| !! | TTTTTGTTATCAGTTAGTGG+TGG | - | chr1_2:74434738-74434757 | Msa0092140:CDS | 30.0% |
| TTGAATAAATCTTCCAGACT+GGG | + | chr1_2:74434973-74434992 | None:intergenic | 30.0% | |
| ATTGAATAAATCTTCCAGAC+TGG | + | chr1_2:74434974-74434993 | None:intergenic | 30.0% | |
| AGACAGACTTACTAATTGAT+CGG | + | chr1_2:74435040-74435059 | None:intergenic | 30.0% | |
| ! | CCTCTATCAAACTTTTCAAA+AGG | + | chr1_2:74435321-74435340 | None:intergenic | 30.0% |
| !! | CCTTTTGAAAAGTTTGATAG+AGG | - | chr1_2:74435318-74435337 | Msa0092140:CDS | 30.0% |
| AAAAGTTTGATAGAGGAGTA+TGG | - | chr1_2:74435325-74435344 | Msa0092140:CDS | 30.0% | |
| ! | AAAGTTTGATAGAGGAGTAT+GGG | - | chr1_2:74435326-74435345 | Msa0092140:CDS | 30.0% |
| ! | CCCTATCATAATTCTTTTCT+AGG | + | chr1_2:74435387-74435406 | None:intergenic | 30.0% |
| CTATAGACAAGTATAACACA+TGG | - | chr1_2:74435410-74435429 | Msa0092140:CDS | 30.0% | |
| ! | CTGTCATATATTTTCTTGTG+TGG | - | chr1_2:74435506-74435525 | Msa0092140:intron | 30.0% |
| CATAGTTGAAGAGTCTAAAT+AGG | - | chr1_2:74435539-74435558 | Msa0092140:intron | 30.0% | |
| GTATGACCTGAATATTAAGA+GGG | - | chr1_2:74435669-74435688 | Msa0092140:intron | 30.0% | |
| TATGACCTGAATATTAAGAG+GGG | - | chr1_2:74435670-74435689 | Msa0092140:intron | 30.0% | |
| ATATTCCCCTCTTAATATTC+AGG | + | chr1_2:74435678-74435697 | None:intergenic | 30.0% | |
| GAATATTAAGAGGGGAATAT+TGG | - | chr1_2:74435678-74435697 | Msa0092140:intron | 30.0% | |
| TGGAGAAAGATATAAATCGT+AGG | - | chr1_2:74435775-74435794 | Msa0092140:intron | 30.0% | |
| ! | ATTTCCTTCAAACTTTTGAG+AGG | + | chr1_2:74435858-74435877 | None:intergenic | 30.0% |
| ! | TTTAGAGATGAGAATTTTGC+AGG | - | chr1_2:74435905-74435924 | Msa0092140:intron | 30.0% |
| ! | TTAGAGATGAGAATTTTGCA+GGG | - | chr1_2:74435906-74435925 | Msa0092140:intron | 30.0% |
| GAAAAGATATGATTGTGCAA+TGG | - | chr1_2:74435946-74435965 | Msa0092140:intron | 30.0% | |
| ! | TAGTTTTTGACAGAATGCAA+CGG | - | chr1_2:74436343-74436362 | Msa0092140:intron | 30.0% |
| !!! | CATTTGATTCGTGGTTTTAA+TGG | - | chr1_2:74436369-74436388 | Msa0092140:intron | 30.0% |
| !! | GTTTTAATGGTTGTGTAGTT+TGG | - | chr1_2:74436382-74436401 | Msa0092140:intron | 30.0% |
| ! | TTGTGTAGTTTGGATGATTT+TGG | - | chr1_2:74436392-74436411 | Msa0092140:intron | 30.0% |
| TACCCATTATAATGAGTCTT+CGG | - | chr1_2:74436450-74436469 | Msa0092140:intron | 30.0% | |
| ATGACATCAAAATACAAGCT+TGG | - | chr1_2:74436479-74436498 | Msa0092140:intron | 30.0% | |
| TGGTTGAGTAACATTTGAAT+TGG | - | chr1_2:74436499-74436518 | Msa0092140:intron | 30.0% | |
| ! | TGGTGAACTTAGGATTTTAA+AGG | + | chr1_2:74436591-74436610 | None:intergenic | 30.0% |
| CAACTCAACATTATACTCAA+GGG | + | chr1_2:74436788-74436807 | None:intergenic | 30.0% | |
| TATAATTAGCACTGTATGGT+TGG | + | chr1_2:74436908-74436927 | None:intergenic | 30.0% | |
| ! | CAAAGCAATTGGTTTCTTTA+AGG | - | chr1_2:74437042-74437061 | Msa0092140:CDS | 30.0% |
| GTGCTAATGTATTTCTTAAG+AGG | - | chr1_2:74437860-74437879 | Msa0092140:intron | 30.0% | |
| CAAGTCATAATTACCTCTAT+TGG | + | chr1_2:74438046-74438065 | None:intergenic | 30.0% | |
| AAAAAAAAACTGACAGATGC+AGG | + | chr1_2:74438073-74438092 | None:intergenic | 30.0% | |
| AATATTTCAATCACACTCAG+TGG | - | chr1_2:74438388-74438407 | Msa0092140:intron | 30.0% | |
| GATGTACAATACTAACTTAG+AGG | - | chr1_2:74438506-74438525 | Msa0092140:intron | 30.0% | |
| AAGCATTCCTAAAGATGTTA+TGG | + | chr1_2:74438918-74438937 | None:intergenic | 30.0% | |
| ! | ATAACATCTTTAGGAATGCT+TGG | - | chr1_2:74438917-74438936 | Msa0092140:intron | 30.0% |
| GCAACTTTCAAAAATTAGTG+GGG | - | chr1_2:74439012-74439031 | Msa0092140:intron | 30.0% | |
| !!! | ATAACATTTTAGGGTGTGTT+TGG | + | chr1_2:74439166-74439185 | None:intergenic | 30.0% |
| ! | AGATTTTACATGAGACAGAA+GGG | + | chr1_2:74439214-74439233 | None:intergenic | 30.0% |
| ! | AAGATTTTACATGAGACAGA+AGG | + | chr1_2:74439215-74439234 | None:intergenic | 30.0% |
| AAGTATGATACAAACTCAGA+GGG | + | chr1_2:74439303-74439322 | None:intergenic | 30.0% | |
| ACATACCTTCTCGAATAAAA+AGG | + | chr1_2:74439395-74439414 | None:intergenic | 30.0% | |
| GTATGTTACCCAAAATAATG+TGG | - | chr1_2:74439409-74439428 | Msa0092140:intron | 30.0% | |
| ! | ATGCATTCAGTATATTTTGC+TGG | - | chr1_2:74439435-74439454 | Msa0092140:intron | 30.0% |
| ! | ATCTTTTGTGCTTTATGTAC+TGG | + | chr1_2:74439686-74439705 | None:intergenic | 30.0% |
| ! | TTCATGCTATTTGTTTCAGT+TGG | - | chr1_2:74439881-74439900 | Msa0092140:intron | 30.0% |
| ! | TCATGCTATTTGTTTCAGTT+GGG | - | chr1_2:74439882-74439901 | Msa0092140:intron | 30.0% |
| !! | ATATCGAGTTGAATTGTGTT+GGG | + | chr1_2:74440443-74440462 | None:intergenic | 30.0% |
| ! | TGGATATGCAATGTTATTTG+TGG | - | chr1_2:74440972-74440991 | Msa0092140:five_prime_UTR | 30.0% |
| ACAGTGAATGTAGTTTAACA+AGG | - | chr1_2:74441015-74441034 | Msa0092140:five_prime_UTR | 30.0% | |
| TTCACAAGTTTGGAGATGAA+CGG | + | chr1_2:74433649-74433668 | None:intergenic | 35.0% | |
| GAATAAGGTAGGAAAAGAGA+AGG | + | chr1_2:74433715-74433734 | None:intergenic | 35.0% | |
| !!! | TATTCTGGGATGATTGGTTT+TGG | - | chr1_2:74433803-74433822 | Msa0092140:three_prime_UTR | 35.0% |
| !!! | GATTGGTTTTGGTTCTTTTG+GGG | - | chr1_2:74433814-74433833 | Msa0092140:three_prime_UTR | 35.0% |
| TTGAAACATCCTCATGAATG+AGG | + | chr1_2:74433881-74433900 | None:intergenic | 35.0% | |
| !!! | TTGTTGGGTTTGGTGAATTT+TGG | - | chr1_2:74433965-74433984 | Msa0092140:three_prime_UTR | 35.0% |
| TTGTGGACAAATTCAAACAG+AGG | + | chr1_2:74434062-74434081 | None:intergenic | 35.0% | |
| GGGCTGAATTCAATATTTGA+AGG | - | chr1_2:74434086-74434105 | Msa0092140:CDS | 35.0% | |
| GTGGAAAGTTTAAACTTGGA+AGG | - | chr1_2:74434135-74434154 | Msa0092140:CDS | 35.0% | |
| ! | AAAATTGGGAGTGGTTCTTT+TGG | - | chr1_2:74434158-74434177 | Msa0092140:CDS | 35.0% |
| !! | TCTTTTGGAGAGCTCTATTT+AGG | - | chr1_2:74434173-74434192 | Msa0092140:CDS | 35.0% |
| TAATATACAAACTGGAGAGG+AGG | - | chr1_2:74434305-74434324 | Msa0092140:intron | 35.0% | |
| CTTGCGATATCATTTATCGA+AGG | - | chr1_2:74434512-74434531 | Msa0092140:intron | 35.0% | |
| ! | GTTAACTTTTGGTCAATAGG+TGG | - | chr1_2:74434560-74434579 | Msa0092140:intron | 35.0% |
| TCCAATTTCCAATTGTCTCA+CGG | - | chr1_2:74434786-74434805 | Msa0092140:CDS | 35.0% | |
| GGTTCTGTCAAAAATATTCC+AGG | - | chr1_2:74434807-74434826 | Msa0092140:intron | 35.0% | |
| CTGTATATGATTCTTCAAGG+AGG | - | chr1_2:74434874-74434893 | Msa0092140:intron | 35.0% | |
| GTTGAATACATGCATTCAAG+AGG | - | chr1_2:74435156-74435175 | Msa0092140:CDS | 35.0% | |
| !! | AATTGTCTGGCTTTATGTCT+CGG | + | chr1_2:74435191-74435210 | None:intergenic | 35.0% |
| ! | AAAGCCAGACAATTTTCTGA+TGG | - | chr1_2:74435197-74435216 | Msa0092140:CDS | 35.0% |
| ! | AAGCCAGACAATTTTCTGAT+GGG | - | chr1_2:74435198-74435217 | Msa0092140:CDS | 35.0% |
| ATTGAACCCACAATAGACAA+AGG | + | chr1_2:74435295-74435314 | None:intergenic | 35.0% | |
| AGACAAGTATAACACATGGT+AGG | - | chr1_2:74435414-74435433 | Msa0092140:CDS | 35.0% | |
| GACAAGTATAACACATGGTA+GGG | - | chr1_2:74435415-74435434 | Msa0092140:CDS | 35.0% | |
| ATGTTCTTACTAGCATATCC+AGG | - | chr1_2:74435475-74435494 | Msa0092140:intron | 35.0% | |
| !! | ATTTTCTTGTGTGGGTTGTA+TGG | - | chr1_2:74435515-74435534 | Msa0092140:intron | 35.0% |
| GGTATGACCTGAATATTAAG+AGG | - | chr1_2:74435668-74435687 | Msa0092140:intron | 35.0% | |
| TATTAAGAGGGGAATATTGG+AGG | - | chr1_2:74435681-74435700 | Msa0092140:intron | 35.0% | |
| CATATTAATGCCACAACACA+AGG | - | chr1_2:74435705-74435724 | Msa0092140:intron | 35.0% | |
| CTTGGTATGATAGATTCAAG+GGG | + | chr1_2:74435744-74435763 | None:intergenic | 35.0% | |
| GCTTGGTATGATAGATTCAA+GGG | + | chr1_2:74435745-74435764 | None:intergenic | 35.0% | |
| ! | TTCAAGTGAGTTGGATGAAA+TGG | - | chr1_2:74435799-74435818 | Msa0092140:intron | 35.0% |
| AAACACTTGACTTCTCTTGT+TGG | + | chr1_2:74435887-74435906 | None:intergenic | 35.0% | |
| ! | TAGAGATGAGAATTTTGCAG+GGG | - | chr1_2:74435907-74435926 | Msa0092140:intron | 35.0% |
| ! | TGTAAATTCGTAGTCTTGAC+AGG | + | chr1_2:74435979-74435998 | None:intergenic | 35.0% |
| ! | TGTTTTTCCTACTCTCTCTT+GGG | + | chr1_2:74436003-74436022 | None:intergenic | 35.0% |
| AGAATCTTGTCTAACATGTG+AGG | - | chr1_2:74436043-74436062 | Msa0092140:intron | 35.0% | |
| TGCTTGATTGCACTATGTAA+CGG | + | chr1_2:74436264-74436283 | None:intergenic | 35.0% | |
| TGCCGAAGACTCATTATAAT+GGG | + | chr1_2:74436455-74436474 | None:intergenic | 35.0% | |
| ATGCCGAAGACTCATTATAA+TGG | + | chr1_2:74436456-74436475 | None:intergenic | 35.0% | |
| GAAAAACTCAAGGACAAACA+TGG | + | chr1_2:74436538-74436557 | None:intergenic | 35.0% | |
| GAGTACTCTTGAAAAACTCA+AGG | + | chr1_2:74436548-74436567 | None:intergenic | 35.0% | |
| AGCGTAAGTCATTGAACTAA+AGG | + | chr1_2:74436701-74436720 | None:intergenic | 35.0% | |
| TTTCCTAAATTTGTCGTGCA+GGG | + | chr1_2:74436754-74436773 | None:intergenic | 35.0% | |
| ATTTCCTAAATTTGTCGTGC+AGG | + | chr1_2:74436755-74436774 | None:intergenic | 35.0% | |
| CCAACTCAACATTATACTCA+AGG | + | chr1_2:74436789-74436808 | None:intergenic | 35.0% | |
| CCTTGAGTATAATGTTGAGT+TGG | - | chr1_2:74436786-74436805 | Msa0092140:intron | 35.0% | |
| ! | TTTGACATGTGCACACATTT+TGG | - | chr1_2:74436831-74436850 | Msa0092140:intron | 35.0% |
| ! | CATTTTATCGTGTTAACGCT+AGG | + | chr1_2:74436961-74436980 | None:intergenic | 35.0% |
| GGATACAAACGGTTAAGTTT+AGG | + | chr1_2:74436987-74437006 | None:intergenic | 35.0% | |
| ! | TCATTTTGTAGTCTCCTTGT+TGG | - | chr1_2:74437018-74437037 | Msa0092140:intron | 35.0% |
| ! | CAATTGGTTTCTTTAAGGGT+GGG | - | chr1_2:74437047-74437066 | Msa0092140:CDS | 35.0% |
| !!! | GATCCCTATATTTTTTCGCA+AGG | + | chr1_2:74437301-74437320 | None:intergenic | 35.0% |
| !! | TTTTAGGAGGGAGCAATATT+AGG | - | chr1_2:74437368-74437387 | Msa0092140:intron | 35.0% |
| TGAGATCAATGGGAATTTGT+GGG | + | chr1_2:74437580-74437599 | None:intergenic | 35.0% | |
| TTGAGATCAATGGGAATTTG+TGG | + | chr1_2:74437581-74437600 | None:intergenic | 35.0% | |
| AGGGAAAATAAGAACCTTAC+AGG | - | chr1_2:74437635-74437654 | Msa0092140:intron | 35.0% | |
| AAATAAGAACCTTACAGGCA+CGG | - | chr1_2:74437640-74437659 | Msa0092140:intron | 35.0% | |
| ! | CGGTAAGTGATATTTTATGC+TGG | - | chr1_2:74437697-74437716 | Msa0092140:intron | 35.0% |
| !! | ATGCTGGTTTGTTACTTTCT+CGG | - | chr1_2:74437713-74437732 | Msa0092140:intron | 35.0% |
| TACTAATTGTGTGATTGTGG+TGG | - | chr1_2:74437796-74437815 | Msa0092140:intron | 35.0% | |
| ATGCAATAGTGCTCAATAAC+TGG | + | chr1_2:74438133-74438152 | None:intergenic | 35.0% | |
| CAGTTGAATGCAGGAAATAT+AGG | + | chr1_2:74438226-74438245 | None:intergenic | 35.0% | |
| CATTCAACTGTTAGCACTTA+GGG | - | chr1_2:74438236-74438255 | Msa0092140:intron | 35.0% | |
| TAGCCAGAAACTTTGAATAG+TGG | - | chr1_2:74438413-74438432 | Msa0092140:intron | 35.0% | |
| AGCCAGAAACTTTGAATAGT+GGG | - | chr1_2:74438414-74438433 | Msa0092140:intron | 35.0% | |
| !! | AGCCAAGCGTTTTTGTTTAA+AGG | - | chr1_2:74438890-74438909 | Msa0092140:intron | 35.0% |
| AGCCTTTAAACAAAAACGCT+TGG | + | chr1_2:74438895-74438914 | None:intergenic | 35.0% | |
| AAAGGCTCCATAACATCTTT+AGG | - | chr1_2:74438908-74438927 | Msa0092140:intron | 35.0% | |
| AAATTAAGTGTGATCAGTGG+CGG | + | chr1_2:74439059-74439078 | None:intergenic | 35.0% | |
| GAAGTATGATACAAACTCAG+AGG | + | chr1_2:74439304-74439323 | None:intergenic | 35.0% | |
| CTTCTCGAATAAAAAGGTCT+CGG | + | chr1_2:74439389-74439408 | None:intergenic | 35.0% | |
| ! | ATATTTTGCTGGAAATTCGG+TGG | - | chr1_2:74439446-74439465 | Msa0092140:intron | 35.0% |
| CATAAAGCACAAAAGATTCC+AGG | - | chr1_2:74439689-74439708 | Msa0092140:CDS | 35.0% | |
| ATCATCATAAGTCCTATGTC+TGG | + | chr1_2:74439999-74440018 | None:intergenic | 35.0% | |
| ! | ACATAGGACTTATGATGATG+TGG | - | chr1_2:74440000-74440019 | Msa0092140:intron | 35.0% |
| !! | TGAGAATGTTGTTTCCTGTT+TGG | - | chr1_2:74440077-74440096 | Msa0092140:intron | 35.0% |
| !! | CATATCGAGTTGAATTGTGT+TGG | + | chr1_2:74440444-74440463 | None:intergenic | 35.0% |
| CAACACAATTCAACTCGATA+TGG | - | chr1_2:74440442-74440461 | Msa0092140:intron | 35.0% | |
| !! | ATTTGGCTTTGATGATACCA+TGG | + | chr1_2:74440485-74440504 | None:intergenic | 35.0% |
| ACTATCAGGAAGTAATCTCA+AGG | - | chr1_2:74440664-74440683 | Msa0092140:five_prime_UTR | 35.0% | |
| CTATCAGGAAGTAATCTCAA+GGG | - | chr1_2:74440665-74440684 | Msa0092140:five_prime_UTR | 35.0% | |
| !! | TTTCTAAATTTTGGCACACC+TGG | - | chr1_2:74440707-74440726 | Msa0092140:five_prime_UTR | 35.0% |
| !! | TTCTAAATTTTGGCACACCT+GGG | - | chr1_2:74440708-74440727 | Msa0092140:five_prime_UTR | 35.0% |
| AATTACCATTGAGGTCACAA+TGG | - | chr1_2:74440786-74440805 | Msa0092140:five_prime_UTR | 35.0% | |
| !! | AATCTTCTGAAGCAATCTGA+GGG | + | chr1_2:74440840-74440859 | None:intergenic | 35.0% |
| !! | AAATCTTCTGAAGCAATCTG+AGG | + | chr1_2:74440841-74440860 | None:intergenic | 35.0% |
| !! | TTGAGTTGTAGCAAGTTTTG+TGG | - | chr1_2:74440952-74440971 | Msa0092140:five_prime_UTR | 35.0% |
| !! | AGGAAAAGAGAAGGTATCTG+TGG | + | chr1_2:74433706-74433725 | None:intergenic | 40.0% |
| !!! | TTTTGGTTCTTTTGGGGTGA+AGG | - | chr1_2:74433820-74433839 | Msa0092140:three_prime_UTR | 40.0% |
| GGACAAATTCAAACAGAGGA+AGG | + | chr1_2:74434058-74434077 | None:intergenic | 40.0% | |
| TTGAATTCAGCCCTTGATTG+TGG | + | chr1_2:74434079-74434098 | None:intergenic | 40.0% | |
| ATCATGGATCATGTGATTGG+TGG | - | chr1_2:74434116-74434135 | Msa0092140:CDS | 40.0% | |
| TTGGTCAATAGGTGGATGAT+TGG | - | chr1_2:74434568-74434587 | Msa0092140:intron | 40.0% | |
| AGCTGCAAAACAGAATTGTG+AGG | + | chr1_2:74434632-74434651 | None:intergenic | 40.0% | |
| ACCGTGAGACAATTGGAAAT+TGG | + | chr1_2:74434790-74434809 | None:intergenic | 40.0% | |
| TTTGACTCATAGTGAAGCTG+TGG | + | chr1_2:74434853-74434872 | None:intergenic | 40.0% | |
| ATGATTCTTCAAGGAGGAAC+TGG | - | chr1_2:74434880-74434899 | Msa0092140:intron | 40.0% | |
| ! | AACTCCAAACCATTTGAGGT+GGG | + | chr1_2:74434911-74434930 | None:intergenic | 40.0% |
| ! | CTCAAATGGTTTGGAGTTGA+GGG | - | chr1_2:74434913-74434932 | Msa0092140:intron | 40.0% |
| CCGACTTCAAAGTGAATTTC+CGG | + | chr1_2:74435005-74435024 | None:intergenic | 40.0% | |
| !! | CCGGAAATTCACTTTGAAGT+CGG | - | chr1_2:74435002-74435021 | Msa0092140:intron | 40.0% |
| AGTAAGTCTGTCTGTCAAGT+TGG | - | chr1_2:74435047-74435066 | Msa0092140:CDS | 40.0% | |
| TTCTTACTAGCATATCCAGG+AGG | - | chr1_2:74435478-74435497 | Msa0092140:intron | 40.0% | |
| ! | ACATTTGTTGAGTCCCACAT+TGG | - | chr1_2:74435641-74435660 | Msa0092140:intron | 40.0% |
| GGTCATACCATATCCAATGT+GGG | + | chr1_2:74435657-74435676 | None:intergenic | 40.0% | |
| AGGTCATACCATATCCAATG+TGG | + | chr1_2:74435658-74435677 | None:intergenic | 40.0% | |
| CGCTTGGTATGATAGATTCA+AGG | + | chr1_2:74435746-74435765 | None:intergenic | 40.0% | |
| ATCGTAGGATTCAAGTGAGT+TGG | - | chr1_2:74435790-74435809 | Msa0092140:intron | 40.0% | |
| GGTACCTCTCAAAAGTTTGA+AGG | - | chr1_2:74435851-74435870 | Msa0092140:intron | 40.0% | |
| TTTACAACCCAAGAGAGAGT+AGG | - | chr1_2:74435993-74436012 | Msa0092140:intron | 40.0% | |
| ! | GTGTTTTTCCTACTCTCTCT+TGG | + | chr1_2:74436004-74436023 | None:intergenic | 40.0% |
| ! | CTGTTGCTCAGTTCTTTTCA+AGG | + | chr1_2:74436110-74436129 | None:intergenic | 40.0% |
| TCAAGGACAAACATGGAAAC+AGG | + | chr1_2:74436531-74436550 | None:intergenic | 40.0% | |
| !! | GGATTTTAAAGGAAAGGTCC+AGG | + | chr1_2:74436580-74436599 | None:intergenic | 40.0% |
| GCAAAATGACTGGTGAACTT+AGG | + | chr1_2:74436601-74436620 | None:intergenic | 40.0% | |
| GCATGCAAGTGACTTTATGT+TGG | - | chr1_2:74436853-74436872 | Msa0092140:CDS | 40.0% | |
| TCCTTGTTGGTCAAAGCAAT+TGG | - | chr1_2:74437031-74437050 | Msa0092140:CDS | 40.0% | |
| ACCAATTGCTTTGACCAACA+AGG | + | chr1_2:74437035-74437054 | None:intergenic | 40.0% | |
| ! | GCAATTGGTTTCTTTAAGGG+TGG | - | chr1_2:74437046-74437065 | Msa0092140:CDS | 40.0% |
| GGTGGGAATTTCTTAATCGT+TGG | - | chr1_2:74437064-74437083 | Msa0092140:intron | 40.0% | |
| CACACTCTGTATCTCATTTC+AGG | - | chr1_2:74437256-74437275 | Msa0092140:intron | 40.0% | |
| TCGGCCTTGCGAAAAAATAT+AGG | - | chr1_2:74437294-74437313 | Msa0092140:intron | 40.0% | |
| CGGCCTTGCGAAAAAATATA+GGG | - | chr1_2:74437295-74437314 | Msa0092140:intron | 40.0% | |
| ATAGGGATCTTCAGACTCAT+AGG | - | chr1_2:74437312-74437331 | Msa0092140:intron | 40.0% | |
| GATCACAAAACCAACCTGTA+CGG | + | chr1_2:74437344-74437363 | None:intergenic | 40.0% | |
| TGGCATAACAGCCTGTTAAA+GGG | + | chr1_2:74437480-74437499 | None:intergenic | 40.0% | |
| ATGGCATAACAGCCTGTTAA+AGG | + | chr1_2:74437481-74437500 | None:intergenic | 40.0% | |
| !! | TCACTTACCGATTCCAAGAT+GGG | + | chr1_2:74437687-74437706 | None:intergenic | 40.0% |
| !! | ATCACTTACCGATTCCAAGA+TGG | + | chr1_2:74437688-74437707 | None:intergenic | 40.0% |
| !! | GGTTTGTTACTTTCTCGGTT+AGG | - | chr1_2:74437718-74437737 | Msa0092140:intron | 40.0% |
| !!! | TTTCCTTTTTCAGTCTTCCC+TGG | - | chr1_2:74437954-74437973 | Msa0092140:intron | 40.0% |
| CGATAAAATCAGTGAGACGA+AGG | - | chr1_2:74438012-74438031 | Msa0092140:intron | 40.0% | |
| !! | GAAGGTATCAACTCCAATAG+AGG | - | chr1_2:74438030-74438049 | Msa0092140:intron | 40.0% |
| AAGTGCTAACAGTTGAATGC+AGG | + | chr1_2:74438235-74438254 | None:intergenic | 40.0% | |
| GCATTCAACTGTTAGCACTT+AGG | - | chr1_2:74438235-74438254 | Msa0092140:intron | 40.0% | |
| ! | TGTGTTTGGATGGAGTGTTT+AGG | - | chr1_2:74438259-74438278 | Msa0092140:intron | 40.0% |
| ! | TTTGGATGGAGTGTTTAGGA+GGG | - | chr1_2:74438263-74438282 | Msa0092140:intron | 40.0% |
| GCCAGAAACTTTGAATAGTG+GGG | - | chr1_2:74438415-74438434 | Msa0092140:intron | 40.0% | |
| CCAGAAACTTTGAATAGTGG+GGG | - | chr1_2:74438416-74438435 | Msa0092140:intron | 40.0% | |
| CTCAACACTTTCTGTTGTGT+TGG | + | chr1_2:74438864-74438883 | None:intergenic | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr1_2:74439148-74439167 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr1_2:74439152-74439171 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | + | chr1_2:74439158-74439177 | None:intergenic | 40.0% | |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | + | chr1_2:74439159-74439178 | None:intergenic | 40.0% |
| ! | CGAGACCTTTTTATTCGAGA+AGG | - | chr1_2:74439387-74439406 | Msa0092140:intron | 40.0% |
| ! | TTGAAGTATCCACAGAGTAG+TGG | - | chr1_2:74439535-74439554 | Msa0092140:CDS | 40.0% |
| ! | TTTTTGTTGGTCGCTTACTG+TGG | - | chr1_2:74439609-74439628 | Msa0092140:intron | 40.0% |
| TTTCAGTTGGGAGAGAGATT+CGG | - | chr1_2:74439894-74439913 | Msa0092140:intron | 40.0% | |
| GAGATTCGGGAGAAATTATC+TGG | - | chr1_2:74439908-74439927 | Msa0092140:intron | 40.0% | |
| AACGTCTTGTCAAACCAAAC+AGG | + | chr1_2:74440094-74440113 | None:intergenic | 40.0% | |
| TCATCAAAGCCAAATTCCTC+AGG | - | chr1_2:74440490-74440509 | Msa0092140:intron | 40.0% | |
| GCTTGTTTCGTATCATACAC+AGG | + | chr1_2:74440577-74440596 | None:intergenic | 40.0% | |
| ! | AAGCAACTTTTGCTCGCAAT+GGG | - | chr1_2:74440593-74440612 | Msa0092140:exon | 40.0% |
| ! | GAGATTACTTCCTGATAGTG+AGG | + | chr1_2:74440663-74440682 | None:intergenic | 40.0% |
| ATAAGGCTTCTTGAAATCCC+AGG | + | chr1_2:74440728-74440747 | None:intergenic | 40.0% | |
| TGGGATTTCAAGAAGCCTTA+TGG | - | chr1_2:74440727-74440746 | Msa0092140:five_prime_UTR | 40.0% | |
| AGGGGATCTAGAAATGATGT+CGG | + | chr1_2:74440821-74440840 | None:intergenic | 40.0% | |
| !! | ATCTTCTGAAGCAATCTGAG+GGG | + | chr1_2:74440839-74440858 | None:intergenic | 40.0% |
| !! | AACGAATGATATGGTGCTGT+AGG | - | chr1_2:74441074-74441093 | Msa0092140:five_prime_UTR | 40.0% |
| ACAAGTTTGGAGATGAACGG+AGG | + | chr1_2:74433646-74433665 | None:intergenic | 45.0% | |
| TTGGGGTGAAGGAATGTAGT+TGG | - | chr1_2:74433831-74433850 | Msa0092140:three_prime_UTR | 45.0% | |
| CTTGGAAGGAAAATTGGGAG+TGG | - | chr1_2:74434149-74434168 | Msa0092140:CDS | 45.0% | |
| TATACAAACTGGAGAGGAGG+TGG | - | chr1_2:74434308-74434327 | Msa0092140:intron | 45.0% | |
| CGCAAGCATGCTCAATTTCA+TGG | + | chr1_2:74434498-74434517 | None:intergenic | 45.0% | |
| TGACAGAACCGTGAGACAAT+TGG | + | chr1_2:74434797-74434816 | None:intergenic | 45.0% | |
| ! | ACTCCAAACCATTTGAGGTG+GGG | + | chr1_2:74434910-74434929 | None:intergenic | 45.0% |
| CAACTCCAAACCATTTGAGG+TGG | + | chr1_2:74434912-74434931 | None:intergenic | 45.0% | |
| CCTCAACTCCAAACCATTTG+AGG | + | chr1_2:74434915-74434934 | None:intergenic | 45.0% | |
| ! | CCTCAAATGGTTTGGAGTTG+AGG | - | chr1_2:74434912-74434931 | Msa0092140:intron | 45.0% |
| ! | TGAGGGAGAGTACAATGTCA+TGG | - | chr1_2:74434930-74434949 | Msa0092140:intron | 45.0% |
| AGGCCCATCAGAAAATTGTC+TGG | + | chr1_2:74435204-74435223 | None:intergenic | 45.0% | |
| !! | GACAATTTTCTGATGGGCCT+CGG | - | chr1_2:74435204-74435223 | Msa0092140:intron | 45.0% |
| !! | CTTGATTTGCTTTACGTCCG+AGG | + | chr1_2:74435224-74435243 | None:intergenic | 45.0% |
| TATATGACAGCGTTACCTCC+TGG | + | chr1_2:74435496-74435515 | None:intergenic | 45.0% | |
| GTTGAGTCCCACATTGGATA+TGG | - | chr1_2:74435647-74435666 | Msa0092140:intron | 45.0% | |
| AAACTGTGCACCTTGTGTTG+TGG | + | chr1_2:74435718-74435737 | None:intergenic | 45.0% | |
| CAACACAAGGTGCACAGTTT+CGG | - | chr1_2:74435718-74435737 | Msa0092140:intron | 45.0% | |
| CATACCAAGCGACGAAGAAA+TGG | - | chr1_2:74435755-74435774 | Msa0092140:intron | 45.0% | |
| TTCTCCATTTCTTCGTCGCT+TGG | + | chr1_2:74435762-74435781 | None:intergenic | 45.0% | |
| ! | AGAATTTTGCAGGGGATGAG+TGG | - | chr1_2:74435915-74435934 | Msa0092140:intron | 45.0% |
| GAGGAGTCTAATAGAAACCC+TGG | - | chr1_2:74436062-74436081 | Msa0092140:intron | 45.0% | |
| GCAGGGATCTATGCTATGAA+CGG | + | chr1_2:74436737-74436756 | None:intergenic | 45.0% | |
| GATCCCTGCACGACAAATTT+AGG | - | chr1_2:74436748-74436767 | Msa0092140:intron | 45.0% | |
| !! | CAGGTGTATGCCATTGACTT+CGG | - | chr1_2:74437275-74437294 | Msa0092140:intron | 45.0% |
| CGCATTTGCATCCCTTTAAC+AGG | - | chr1_2:74437466-74437485 | Msa0092140:intron | 45.0% | |
| GTCAACACCCATCTTGGAAT+CGG | - | chr1_2:74437677-74437696 | Msa0092140:intron | 45.0% | |
| ACAAAGTCGAAGGGATGATC+TGG | - | chr1_2:74437823-74437842 | Msa0092140:intron | 45.0% | |
| ! | AGGGATGATCTGGAATCTCT+TGG | - | chr1_2:74437833-74437852 | Msa0092140:intron | 45.0% |
| TTGCCAGGGAAGACTGAAAA+AGG | + | chr1_2:74437960-74437979 | None:intergenic | 45.0% | |
| !! | TTTTTCAGTCTTCCCTGGCA+AGG | - | chr1_2:74437959-74437978 | Msa0092140:intron | 45.0% |
| GTTAGCACTTAGGGTGTGTT+TGG | - | chr1_2:74438245-74438264 | Msa0092140:intron | 45.0% | |
| ! | GTTTGGATGGAGTGTTTAGG+AGG | - | chr1_2:74438262-74438281 | Msa0092140:intron | 45.0% |
| ! | TTGGATGGAGTGTTTAGGAG+GGG | - | chr1_2:74438264-74438283 | Msa0092140:intron | 45.0% |
| CCCCCACTATTCAAAGTTTC+TGG | + | chr1_2:74438419-74438438 | None:intergenic | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr1_2:74439147-74439166 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr1_2:74439149-74439168 | None:intergenic | 45.0% | |
| GAGACAGAAGGGAAATGAAG+AGG | + | chr1_2:74439203-74439222 | None:intergenic | 45.0% | |
| TGTCCTCAAACCTCAACGAA+CGG | + | chr1_2:74439335-74439354 | None:intergenic | 45.0% | |
| TGGTTGTTGTAACGACAGCA+TGG | - | chr1_2:74439629-74439648 | Msa0092140:intron | 45.0% | |
| CTGTCACAGCACATATTAGC+AGG | + | chr1_2:74439754-74439773 | None:intergenic | 45.0% | |
| TTCAGTTGGGAGAGAGATTC+GGG | - | chr1_2:74439895-74439914 | Msa0092140:intron | 45.0% | |
| ! | TTGTTGAAGCATTCACCCAG+AGG | - | chr1_2:74439936-74439955 | Msa0092140:intron | 45.0% |
| GCAAATTCTAGCCCTCATCA+CGG | - | chr1_2:74439965-74439984 | Msa0092140:intron | 45.0% | |
| AAGCAGTTCAAGAAGAGCCA+TGG | - | chr1_2:74440465-74440484 | Msa0092140:intron | 45.0% | |
| GAATGGTCACCTGAGGAATT+TGG | + | chr1_2:74440502-74440521 | None:intergenic | 45.0% | |
| AATTCCTCAGGTGACCATTC+TGG | - | chr1_2:74440502-74440521 | Msa0092140:intron | 45.0% | |
| ! | CAAGCAACTTTTGCTCGCAA+TGG | - | chr1_2:74440592-74440611 | Msa0092140:exon | 45.0% |
| TCATGCCATTGTGACCTCAA+TGG | + | chr1_2:74440794-74440813 | None:intergenic | 45.0% | |
| GGGGATCTAGAAATGATGTC+GGG | + | chr1_2:74440820-74440839 | None:intergenic | 45.0% | |
| !!! | TAAAAATGATATTTTTTTTT+TGG | + | chr1_2:74433745-74433764 | None:intergenic | 5.0% |
| TGGAGATGAACGGAGGAAGT+GGG | + | chr1_2:74433639-74433658 | None:intergenic | 50.0% | |
| TTGGAGATGAACGGAGGAAG+TGG | + | chr1_2:74433640-74433659 | None:intergenic | 50.0% | |
| TGTGGTGTGCTGGATGAAAG+AGG | + | chr1_2:74433688-74433707 | None:intergenic | 50.0% | |
| !! | AGAAGGTATCTGTGGTGTGC+TGG | + | chr1_2:74433698-74433717 | None:intergenic | 50.0% |
| TCCAGGAATCTGTGAAGACC+AGG | - | chr1_2:74434824-74434843 | Msa0092140:intron | 50.0% | |
| ATAGTGAAGCTGTGGATGCC+TGG | + | chr1_2:74434845-74434864 | None:intergenic | 50.0% | |
| ATCCCCCACCTCAAATGGTT+TGG | - | chr1_2:74434904-74434923 | Msa0092140:intron | 50.0% | |
| ! | CTCCAAACCATTTGAGGTGG+GGG | + | chr1_2:74434909-74434928 | None:intergenic | 50.0% |
| GTCATGGTCATCGACCTTCT+TGG | - | chr1_2:74434946-74434965 | Msa0092140:intron | 50.0% | |
| CAAGCAACTGCAAGCTAGTC+AGG | - | chr1_2:74436278-74436297 | Msa0092140:intron | 50.0% | |
| ! | CAACGGCGTCATTTGATTCG+TGG | - | chr1_2:74436360-74436379 | Msa0092140:intron | 50.0% |
| ! | AGAGTACTCTCACTTCGTCC+TGG | - | chr1_2:74436559-74436578 | Msa0092140:intron | 50.0% |
| TTTCGCAAGGCCGAAGTCAA+TGG | + | chr1_2:74437288-74437307 | None:intergenic | 50.0% | |
| CTCATAGGCACATACCGTAC+AGG | - | chr1_2:74437327-74437346 | Msa0092140:intron | 50.0% | |
| TAGGCACATACCGTACAGGT+TGG | - | chr1_2:74437331-74437350 | Msa0092140:intron | 50.0% | |
| GCAAGTGTCAACACCCATCT+TGG | - | chr1_2:74437671-74437690 | Msa0092140:intron | 50.0% | |
| TGGTGGCAGAACAAAGTCGA+AGG | - | chr1_2:74437813-74437832 | Msa0092140:intron | 50.0% | |
| GGTGGCAGAACAAAGTCGAA+GGG | - | chr1_2:74437814-74437833 | Msa0092140:intron | 50.0% | |
| GCACTTAGGGTGTGTTTGGA+TGG | - | chr1_2:74438249-74438268 | Msa0092140:intron | 50.0% | |
| ! | ATGGAGTGTTTAGGAGGGGA+GGG | - | chr1_2:74438268-74438287 | Msa0092140:intron | 50.0% |
| TGGATTGAGGGTTTAGGAGG+GGG | + | chr1_2:74439146-74439165 | None:intergenic | 50.0% | |
| TCCACTATTGCCGTTCGTTG+AGG | - | chr1_2:74439322-74439341 | Msa0092140:intron | 50.0% | |
| ACCTCAACGAACGGCAATAG+TGG | + | chr1_2:74439326-74439345 | None:intergenic | 50.0% | |
| TTGCCGTTCGTTGAGGTTTG+AGG | - | chr1_2:74439329-74439348 | Msa0092140:intron | 50.0% | |
| TCGGTGGTTGTGAATTGACG+TGG | - | chr1_2:74439462-74439481 | Msa0092140:intron | 50.0% | |
| CGGTGGTTGTGAATTGACGT+GGG | - | chr1_2:74439463-74439482 | Msa0092140:intron | 50.0% | |
| TTGTAACGACAGCATGGCAC+TGG | - | chr1_2:74439635-74439654 | Msa0092140:intron | 50.0% | |
| CAGCTGAAAGACAACAGACC+TGG | + | chr1_2:74439710-74439729 | None:intergenic | 50.0% | |
| AGAATTTGCGCGGTTCCTCT+GGG | + | chr1_2:74439954-74439973 | None:intergenic | 50.0% | |
| TAGAATTTGCGCGGTTCCTC+TGG | + | chr1_2:74439955-74439974 | None:intergenic | 50.0% | |
| GATGAGGGCTAGAATTTGCG+CGG | + | chr1_2:74439964-74439983 | None:intergenic | 50.0% | |
| TGGTGTGTTCACCGTGATGA+GGG | + | chr1_2:74439979-74439998 | None:intergenic | 50.0% | |
| ACGGTGAACACACCAGACAT+AGG | - | chr1_2:74439984-74440003 | Msa0092140:intron | 50.0% | |
| TGAACTCTATGTGCGCCAGA+TGG | + | chr1_2:74440553-74440572 | None:intergenic | 50.0% | |
| AGCTCCTCAGAGGATCATCA+CGG | + | chr1_2:74440633-74440652 | None:intergenic | 50.0% | |
| ! | GCTTTGAGCTCCTCACTATC+AGG | - | chr1_2:74440650-74440669 | Msa0092140:five_prime_UTR | 50.0% |
| !! | CGGAGGAAGTGGGTCTTGTT+TGG | + | chr1_2:74433629-74433648 | None:intergenic | 55.0% |
| AGAGGAGGTGGCTGTTAAGC+TGG | - | chr1_2:74434320-74434339 | Msa0092140:intron | 55.0% | |
| ! | GCCTGGTCTTCACAGATTCC+TGG | + | chr1_2:74434828-74434847 | None:intergenic | 55.0% |
| CTGGAATCCCCCACCTCAAA+TGG | - | chr1_2:74434899-74434918 | Msa0092140:intron | 55.0% | |
| CTTCCAGACTGGGTCCAAGA+AGG | + | chr1_2:74434963-74434982 | None:intergenic | 55.0% | |
| TCTTCCCTGGCAAGGACTGA+GGG | - | chr1_2:74437967-74437986 | Msa0092140:intron | 55.0% | |
| ! | GATGGAGTGTTTAGGAGGGG+AGG | - | chr1_2:74438267-74438286 | Msa0092140:intron | 55.0% |
| ! | TGGAGTGTTTAGGAGGGGAG+GGG | - | chr1_2:74438269-74438288 | Msa0092140:intron | 55.0% |
| TGTTTAGGAGGGGAGGGGAA+GGG | - | chr1_2:74438274-74438293 | Msa0092140:intron | 55.0% | |
| GGGGCACAGATAGCTTAACG+TGG | - | chr1_2:74439031-74439050 | Msa0092140:intron | 55.0% | |
| TGAGGGTTTAGGAGGGGGAA+GGG | + | chr1_2:74439141-74439160 | None:intergenic | 55.0% | |
| TTGAGGGTTTAGGAGGGGGA+AGG | + | chr1_2:74439142-74439161 | None:intergenic | 55.0% | |
| !! | GACGTGGGCATTGATCATGC+AGG | - | chr1_2:74439478-74439497 | Msa0092140:CDS | 55.0% |
| CTAGAGCTGCCACTACTCTG+TGG | + | chr1_2:74439547-74439566 | None:intergenic | 55.0% | |
| ! | CAGAGTAGTGGCAGCTCTAG+AGG | - | chr1_2:74439547-74439566 | Msa0092140:CDS | 55.0% |
| !! | GTAGTGGCAGCTCTAGAGGA+CGG | - | chr1_2:74439551-74439570 | Msa0092140:CDS | 55.0% |
| !! | TAGTGGCAGCTCTAGAGGAC+GGG | - | chr1_2:74439552-74439571 | Msa0092140:intron | 55.0% |
| CTGGTGTGTTCACCGTGATG+AGG | + | chr1_2:74439980-74439999 | None:intergenic | 55.0% | |
| AGGTGACCATTCTGGCAGGA+TGG | - | chr1_2:74440510-74440529 | Msa0092140:intron | 55.0% | |
| TTGTGGCCATCCTGCCAGAA+TGG | + | chr1_2:74440519-74440538 | None:intergenic | 55.0% | |
| CTCTATGTGCGCCAGATGGA+CGG | + | chr1_2:74440549-74440568 | None:intergenic | 55.0% | |
| GCTCGCAATGGGTCTATGAG+AGG | - | chr1_2:74440604-74440623 | Msa0092140:five_prime_UTR | 55.0% | |
| TCCTCAGAGGATCATCACGG+TGG | + | chr1_2:74440630-74440649 | None:intergenic | 55.0% | |
| AGGAGCTCAAAGCTCCTCAG+AGG | + | chr1_2:74440643-74440662 | None:intergenic | 55.0% | |
| CGACCTTCTTGGACCCAGTC+TGG | - | chr1_2:74434957-74434976 | Msa0092140:intron | 60.0% | |
| CATAGCGTGCCGTGCCTGTA+AGG | + | chr1_2:74437652-74437671 | None:intergenic | 60.0% | |
| GTCTTCCCTGGCAAGGACTG+AGG | - | chr1_2:74437966-74437985 | Msa0092140:intron | 60.0% | |
| GTGTTTAGGAGGGGAGGGGA+AGG | - | chr1_2:74438273-74438292 | Msa0092140:intron | 60.0% | |
| GTTTAGGAGGGGGAAGGGAG+GGG | + | chr1_2:74439136-74439155 | None:intergenic | 60.0% | |
| GGTTTAGGAGGGGGAAGGGA+GGG | + | chr1_2:74439137-74439156 | None:intergenic | 60.0% | |
| !! | ACGACAGCATGGCACTGGCA+AGG | - | chr1_2:74439640-74439659 | Msa0092140:intron | 60.0% |
| CCTGCCAGAATGGTCACCTG+AGG | + | chr1_2:74440509-74440528 | None:intergenic | 60.0% | |
| CCTCAGGTGACCATTCTGGC+AGG | - | chr1_2:74440506-74440525 | Msa0092140:intron | 60.0% | |
| TCTGGCAGGATGGCCACAAG+TGG | - | chr1_2:74440520-74440539 | Msa0092140:intron | 60.0% | |
| CTGGCAGGATGGCCACAAGT+GGG | - | chr1_2:74440521-74440540 | Msa0092140:intron | 60.0% | |
| TGGCAGGATGGCCACAAGTG+GGG | - | chr1_2:74440522-74440541 | Msa0092140:intron | 60.0% | |
| GCCACCGTGATGATCCTCTG+AGG | - | chr1_2:74440626-74440645 | Msa0092140:five_prime_UTR | 60.0% | |
| CCAGCCCTCAGTCCTTGCCA+GGG | + | chr1_2:74437974-74437993 | None:intergenic | 65.0% | |
| TCCAGCCCTCAGTCCTTGCC+AGG | + | chr1_2:74437975-74437994 | None:intergenic | 65.0% | |
| TTAGGAGGGGAGGGGAAGGG+AGG | - | chr1_2:74438277-74438296 | Msa0092140:intron | 65.0% | |
| TAGGAGGGGAGGGGAAGGGA+GGG | - | chr1_2:74438278-74438297 | Msa0092140:intron | 65.0% | |
| GGGTTTAGGAGGGGGAAGGG+AGG | + | chr1_2:74439138-74439157 | None:intergenic | 65.0% | |
| GGCAGGATGGCCACAAGTGG+GGG | - | chr1_2:74440523-74440542 | Msa0092140:CDS | 65.0% | |
| AGATGGACGGCCCCCACTTG+TGG | + | chr1_2:74440536-74440555 | None:intergenic | 65.0% | |
| ACAAGTGGGGGCCGTCCATC+TGG | - | chr1_2:74440535-74440554 | Msa0092140:CDS | 65.0% | |
| CCCTGGCAAGGACTGAGGGC+TGG | - | chr1_2:74437971-74437990 | Msa0092140:intron | 70.0% | |
| AGGAGGGGAGGGGAAGGGAG+GGG | - | chr1_2:74438279-74438298 | Msa0092140:intron | 70.0% | |
| AGGAGGGGGAAGGGAGGGGA+GGG | + | chr1_2:74439132-74439151 | None:intergenic | 70.0% | |
| TAGGAGGGGGAAGGGAGGGG+AGG | + | chr1_2:74439133-74439152 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 74433541 | 74441176 | 74433541 | ID=Msa0092140;Name=Msa0092140 |
| chr1_2 | mRNA | 74433541 | 74441176 | 74433541 | ID=Msa0092140-mRNA-1;Parent=Msa0092140;Name=Msa0092140-mRNA-1;_AED=0.09;_eAED=0.09;_QI=578|1|1|1|1|1|13|498|448 |
| chr1_2 | exon | 74433541 | 74434284 | 74433541 | ID=Msa0092140-mRNA-1:exon:26244;Parent=Msa0092140-mRNA-1 |
| chr1_2 | exon | 74434696 | 74434817 | 74434696 | ID=Msa0092140-mRNA-1:exon:26243;Parent=Msa0092140-mRNA-1 |
| chr1_2 | exon | 74435007 | 74435070 | 74435007 | ID=Msa0092140-mRNA-1:exon:26242;Parent=Msa0092140-mRNA-1 |
| chr1_2 | exon | 74435144 | 74435217 | 74435144 | ID=Msa0092140-mRNA-1:exon:26241;Parent=Msa0092140-mRNA-1 |
| chr1_2 | exon | 74435309 | 74435435 | 74435309 | ID=Msa0092140-mRNA-1:exon:26240;Parent=Msa0092140-mRNA-1 |
| chr1_2 | exon | 74436666 | 74436750 | 74436666 | ID=Msa0092140-mRNA-1:exon:26239;Parent=Msa0092140-mRNA-1 |
| chr1_2 | exon | 74436832 | 74436895 | 74436832 | ID=Msa0092140-mRNA-1:exon:26238;Parent=Msa0092140-mRNA-1 |
| chr1_2 | exon | 74437019 | 74437080 | 74437019 | ID=Msa0092140-mRNA-1:exon:26237;Parent=Msa0092140-mRNA-1 |
| chr1_2 | exon | 74437369 | 74437439 | 74437369 | ID=Msa0092140-mRNA-1:exon:26236;Parent=Msa0092140-mRNA-1 |
| chr1_2 | exon | 74439475 | 74439570 | 74439475 | ID=Msa0092140-mRNA-1:exon:26235;Parent=Msa0092140-mRNA-1 |
| chr1_2 | exon | 74439670 | 74439888 | 74439670 | ID=Msa0092140-mRNA-1:exon:26234;Parent=Msa0092140-mRNA-1 |
| chr1_2 | exon | 74440376 | 74440416 | 74440376 | ID=Msa0092140-mRNA-1:exon:26233;Parent=Msa0092140-mRNA-1 |
| chr1_2 | exon | 74440523 | 74441176 | 74440523 | ID=Msa0092140-mRNA-1:exon:26232;Parent=Msa0092140-mRNA-1 |
| chr1_2 | five_prime_UTR | 74440599 | 74441176 | 74440599 | ID=Msa0092140-mRNA-1:five_prime_utr;Parent=Msa0092140-mRNA-1 |
| chr1_2 | CDS | 74440523 | 74440598 | 74440523 | ID=Msa0092140-mRNA-1:cds;Parent=Msa0092140-mRNA-1 |
| chr1_2 | CDS | 74440376 | 74440416 | 74440376 | ID=Msa0092140-mRNA-1:cds;Parent=Msa0092140-mRNA-1 |
| chr1_2 | CDS | 74439670 | 74439888 | 74439670 | ID=Msa0092140-mRNA-1:cds;Parent=Msa0092140-mRNA-1 |
| chr1_2 | CDS | 74439475 | 74439570 | 74439475 | ID=Msa0092140-mRNA-1:cds;Parent=Msa0092140-mRNA-1 |
| chr1_2 | CDS | 74437369 | 74437439 | 74437369 | ID=Msa0092140-mRNA-1:cds;Parent=Msa0092140-mRNA-1 |
| chr1_2 | CDS | 74437019 | 74437080 | 74437019 | ID=Msa0092140-mRNA-1:cds;Parent=Msa0092140-mRNA-1 |
| chr1_2 | CDS | 74436832 | 74436895 | 74436832 | ID=Msa0092140-mRNA-1:cds;Parent=Msa0092140-mRNA-1 |
| chr1_2 | CDS | 74436666 | 74436750 | 74436666 | ID=Msa0092140-mRNA-1:cds;Parent=Msa0092140-mRNA-1 |
| chr1_2 | CDS | 74435309 | 74435435 | 74435309 | ID=Msa0092140-mRNA-1:cds;Parent=Msa0092140-mRNA-1 |
| chr1_2 | CDS | 74435144 | 74435217 | 74435144 | ID=Msa0092140-mRNA-1:cds;Parent=Msa0092140-mRNA-1 |
| chr1_2 | CDS | 74435007 | 74435070 | 74435007 | ID=Msa0092140-mRNA-1:cds;Parent=Msa0092140-mRNA-1 |
| chr1_2 | CDS | 74434696 | 74434817 | 74434696 | ID=Msa0092140-mRNA-1:cds;Parent=Msa0092140-mRNA-1 |
| chr1_2 | CDS | 74434039 | 74434284 | 74434039 | ID=Msa0092140-mRNA-1:cds;Parent=Msa0092140-mRNA-1 |
| chr1_2 | three_prime_UTR | 74433541 | 74434038 | 74433541 | ID=Msa0092140-mRNA-1:three_prime_utr;Parent=Msa0092140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
