AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0433630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433630 MtrunA17_Chr3g0139411 97.317 671 15 2 1 669 43 712 0.0 1340
Msa0433630 MtrunA17_Chr2g0331821 54.513 565 226 5 128 669 204 760 0.0 583
Msa0433630 MtrunA17_Chr4g0004471 53.468 447 196 4 226 667 117 556 2.12e-156 462
Msa0433630 MtrunA17_Chr8g0335341 28.634 454 289 9 234 663 279 721 6.12e-54 197
Msa0433630 MtrunA17_Chr5g0405741 28.903 474 290 9 208 657 181 631 4.85e-53 193
Msa0433630 MtrunA17_Chr7g0250681 28.728 456 290 6 228 663 401 841 1.78e-52 194
Msa0433630 MtrunA17_Chr2g0303521 29.247 465 300 9 212 659 179 631 4.70e-46 173
Msa0433630 MtrunA17_Chr1g0211271 26.945 527 330 13 172 668 236 737 4.08e-45 172
Msa0433630 MtrunA17_Chr4g0072011 28.614 332 214 8 234 548 337 662 1.19e-33 137
Msa0433630 MtrunA17_Chr3g0124841 24.009 454 307 7 234 658 456 900 3.55e-33 136
Msa0433630 MtrunA17_Chr3g0118401 26.695 472 259 16 155 547 218 681 3.62e-33 136
Msa0433630 MtrunA17_Chr5g0440551 27.184 412 218 11 232 591 308 689 9.88e-31 128
Msa0433630 MtrunA17_Chr5g0448571 25.060 419 276 7 245 654 367 756 1.04e-30 128
Msa0433630 MtrunA17_Chr3g0143731 23.007 439 287 10 231 657 280 679 3.07e-26 114
Msa0433630 MtrunA17_Chr2g0298171 26.437 348 211 9 232 545 532 868 2.03e-25 112
Msa0433630 MtrunA17_Chr3g0130761 24.217 351 250 5 315 658 434 775 6.07e-21 97.8
Msa0433630 MtrunA17_Chr8g0382551 26.695 236 117 9 172 367 218 437 4.53e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433630 AT5G25590.1 55.738 732 257 14 1 668 43 771 0.0 659
Msa0433630 AT1G52320.2 62.585 441 163 1 219 657 336 776 0.0 568
Msa0433630 AT1G52320.5 62.585 441 163 1 219 657 336 776 0.0 568
Msa0433630 AT1G52320.1 62.585 441 163 1 219 657 313 753 0.0 568
Msa0433630 AT1G52320.3 62.670 442 161 3 219 657 10 450 0.0 566
Msa0433630 AT1G52320.4 62.670 442 161 3 219 657 10 450 0.0 566
Msa0433630 AT1G02110.1 28.964 473 294 7 213 663 249 701 2.47e-57 206
Msa0433630 AT3G51290.3 29.730 444 284 5 234 665 202 629 6.88e-55 199
Msa0433630 AT3G51290.2 29.730 444 284 5 234 665 202 629 8.54e-55 201
Msa0433630 AT3G51290.1 29.279 444 280 6 234 665 202 623 2.71e-50 186
Msa0433630 AT3G60320.1 29.128 436 285 9 228 647 351 778 6.69e-47 178
Msa0433630 AT2G34670.2 28.539 445 278 10 233 657 250 674 3.51e-39 154
Msa0433630 AT2G27090.2 27.704 379 222 8 229 562 304 675 1.67e-36 146
Msa0433630 AT2G27090.1 27.704 379 222 8 229 562 304 675 1.67e-36 146
Msa0433630 AT1G21740.1 24.060 532 350 11 160 658 432 942 5.73e-33 136
Msa0433630 AT4G39790.1 27.851 456 249 17 134 535 167 596 2.07e-32 133
Msa0433630 AT1G77500.1 25.566 442 291 7 234 658 451 871 1.21e-31 132
Msa0433630 AT4G35240.4 26.364 330 216 6 236 551 423 739 1.75e-27 119
Msa0433630 AT4G35240.3 26.364 330 216 6 236 551 423 739 1.75e-27 119
Msa0433630 AT4G35240.2 24.208 442 278 8 236 657 423 827 1.96e-27 119
Msa0433630 AT4G35240.1 24.208 442 278 8 236 657 423 827 1.96e-27 119
Msa0433630 AT2G34670.1 27.193 456 255 17 119 529 121 544 1.02e-24 109
Msa0433630 AT2G19090.1 26.571 350 214 6 232 548 385 724 2.97e-24 108
Msa0433630 AT2G17110.1 25.079 315 224 3 236 538 313 627 8.89e-24 107
Msa0433630 AT4G30130.3 25.198 504 300 17 114 548 146 641 5.10e-23 104
Msa0433630 AT4G30130.1 25.198 504 300 17 114 548 146 641 5.10e-23 104
Msa0433630 AT1G20530.1 22.896 297 205 5 231 520 230 509 3.45e-20 95.5
Msa0433630 AT5G54480.1 23.358 411 268 12 254 657 345 715 4.44e-17 85.9
Msa0433630 AT4G30130.4 36.508 126 77 1 313 438 398 520 1.01e-14 77.8
Msa0433630 AT4G30130.2 36.508 126 77 1 313 438 398 520 1.01e-14 77.8

Find 185 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATGGATATGGATAATA+TGG 0.114095 3_2:-86082376 Msa0433630:CDS
GGGCTTGGATTGGTGGATTT+TGG 0.116448 3_2:+86080292 None:intergenic
GGCTTGGGATTATTTCTTTA+TGG 0.126467 3_2:-86082391 Msa0433630:CDS
AAACTTGTTGCTCTTGTTAT+TGG 0.151747 3_2:-86081162 Msa0433630:CDS
GGATTATTTCTTTATGGATA+TGG 0.176860 3_2:-86082385 Msa0433630:CDS
GCGCCACCTTCTCCTCCTTC+TGG 0.178874 3_2:-86082459 Msa0433630:CDS
CAAATTGTGACTCCCATTCT+TGG 0.206075 3_2:+86080430 None:intergenic
GTTCTAACCATCCTTAATTA+TGG 0.212748 3_2:-86079634 Msa0433630:three_prime_UTR
ATAACAAGAGCAACAAGTTT+TGG 0.264787 3_2:+86081165 None:intergenic
AAATGTGCTTTCCATAATTA+AGG 0.266395 3_2:+86079623 None:intergenic
AGAAACACATGCCACTGTTT+TGG 0.288622 3_2:-86081629 Msa0433630:CDS
GGTGAGAATGTTGATGTTAA+TGG 0.289655 3_2:-86082297 Msa0433630:CDS
CCCTTCGTTGTAAATGCTTC+TGG 0.304621 3_2:+86080082 None:intergenic
CTCAACTTTCTCCGGTGTCT+TGG 0.318035 3_2:+86082248 None:intergenic
TTCTAATTTCGCTGATGGTC+GGG 0.320744 3_2:-86081989 Msa0433630:CDS
ACAACTGAGAATCGCGAATA+TGG 0.320972 3_2:+86081190 None:intergenic
TCCAAAGGCGGTGGAGGTTT+AGG 0.322625 3_2:+86082690 None:intergenic
CGCCTTCGCCGCCGGTCATT+CGG 0.325221 3_2:-86082819 Msa0433630:five_prime_UTR
CGCCACCTTCTCCTCCTTCT+GGG 0.330101 3_2:-86082458 Msa0433630:CDS
AACTTGTTGCTCTTGTTATT+GGG 0.330220 3_2:-86081161 Msa0433630:intron
GGAGGAAGAGATGAAGTTAA+AGG 0.341872 3_2:-86080166 Msa0433630:CDS
TGAGGTTGATGTGTATAATA+AGG 0.342260 3_2:-86082229 Msa0433630:CDS
TCCTAAACCTCCACCGCCTT+TGG 0.343046 3_2:-86082691 Msa0433630:CDS
ATAATCCCAAGCCATGTTCT+TGG 0.359746 3_2:+86082401 None:intergenic
TGAGTTTAGAAGAGCAATTA+AGG 0.371298 3_2:-86082130 Msa0433630:CDS
AGAGAAGCCGGTGAGAAATT+AGG 0.374879 3_2:+86082636 None:intergenic
TCAACTTTCTCCGGTGTCTT+GGG 0.378191 3_2:+86082249 None:intergenic
GGCGGAAGAGGCGGTGGAGG+AGG 0.380266 3_2:+86082657 None:intergenic
GAACATATTCTCCCACATAT+TGG 0.386881 3_2:+86080572 None:intergenic
GATGCCGCCACCGCCTTTGC+CGG 0.392756 3_2:-86082427 Msa0433630:CDS
GCAGATTTCGCTAGCTCGTC+AGG 0.404088 3_2:+86080234 None:intergenic
ACGACCGCACCGTGCAGCTT+TGG 0.406384 3_2:-86080461 Msa0433630:CDS
TGATATTTCTCAAGATCATA+AGG 0.409383 3_2:-86080502 Msa0433630:CDS
GAAGAGGCGGTGGAGGAGGG+AGG 0.409543 3_2:+86082661 None:intergenic
GAGAAATATCAAGAGATTTG+AGG 0.419497 3_2:+86080514 None:intergenic
GAGAACTAAGAATCTGCATA+AGG 0.420407 3_2:+86082091 None:intergenic
TGAGCTCTTCCGCGCGCTAT+CGG 0.425047 3_2:-86079890 Msa0433630:CDS
GCTCGTAACGCCTTCGCCGC+CGG 0.434255 3_2:-86082827 Msa0433630:five_prime_UTR
CTAAGATGCTTGAAGCTACT+AGG 0.436626 3_2:-86082023 Msa0433630:CDS
ATCATCTCTTTCTAGATCAT+CGG 0.445892 3_2:+86080056 None:intergenic
CAAGCCATGTTCTTGGAATC+CGG 0.447999 3_2:+86082408 None:intergenic
GGTACCATTCTTCAAAAGCT+TGG 0.451334 3_2:+86080103 None:intergenic
TTGTTGAAGAGGTGGAAGAA+GGG 0.456126 3_2:-86082530 Msa0433630:CDS
ATTCTAATTTCGCTGATGGT+CGG 0.456595 3_2:-86081990 Msa0433630:CDS
CTTTCAGGATGGCCAATATG+TGG 0.463738 3_2:-86080584 Msa0433630:intron
GTGAGGATGCAGCTTAACTT+AGG 0.464738 3_2:+86079736 None:intergenic
GATAGCGCGCGGAAGAGCTC+AGG 0.466453 3_2:+86079892 None:intergenic
ACAAACTGCTTCTCCGAGAT+CGG 0.469741 3_2:+86080018 None:intergenic
AAGATCGGCGGTGGAATTAG+TGG 0.472783 3_2:-86082564 Msa0433630:CDS
TCATCTCTTTCTAGATCATC+GGG 0.475608 3_2:+86080057 None:intergenic
CGGATTCCAAGAACATGGCT+TGG 0.478452 3_2:-86082407 Msa0433630:CDS
TATCATTCTAATTTCGCTGA+TGG 0.478716 3_2:-86081994 Msa0433630:CDS
CCCTACACAACACTATCTTA+AGG 0.478827 3_2:+86079579 None:intergenic
CATTCAAGGGTGTATCCAAT+GGG 0.479178 3_2:-86081687 Msa0433630:CDS
ACATCCAAGCTCTTTATAGC+TGG 0.481961 3_2:-86080380 Msa0433630:CDS
TTGGAATCCGGCAAAGGCGG+TGG 0.482836 3_2:+86082420 None:intergenic
TAAAGAAGGGCTTGGATTGG+TGG 0.484719 3_2:+86080285 None:intergenic
GGATTCCAAGAACATGGCTT+GGG 0.486447 3_2:-86082406 Msa0433630:CDS
GAAATGTGAGGAAACTAGAA+AGG 0.486729 3_2:-86080142 Msa0433630:CDS
AAAACAAAATAATCTGTGTT+GGG 0.487035 3_2:-86083070 None:intergenic
CAAAACAAAATAATCTGTGT+TGG 0.487391 3_2:-86083071 None:intergenic
ATTGAACTTGAGAATGAGAA+GGG 0.489410 3_2:+86082956 None:intergenic
ATTGTTGAAGAGGTGGAAGA+AGG 0.490175 3_2:-86082531 Msa0433630:CDS
GATGAGATTGAGAATGAAGA+AGG 0.491897 3_2:-86082330 Msa0433630:CDS
ATTGCCCACGCTCAAGGTGG+TGG 0.492952 3_2:-86079823 Msa0433630:CDS
TTTGGAATGTAATCCAAGAA+TGG 0.494175 3_2:-86080443 Msa0433630:CDS
TTAGGCGGAAGAGGCGGTGG+AGG 0.494227 3_2:+86082654 None:intergenic
GAATCCGGCAAAGGCGGTGG+CGG 0.494775 3_2:+86082423 None:intergenic
ATTGCTCTTCTAAACTCAGC+AGG 0.495940 3_2:+86082135 None:intergenic
GGCGCCAGTGTTGAATCATT+AGG 0.496446 3_2:-86081297 Msa0433630:CDS
TTGGAATGTAATCCAAGAAT+GGG 0.497192 3_2:-86080442 Msa0433630:CDS
CAGTTACAGCACCGCAAGAT+CGG 0.497409 3_2:-86082579 Msa0433630:CDS
GGGAAGAGGTTCTTTGAATG+AGG 0.498151 3_2:-86082355 Msa0433630:CDS
AACCGAATGACCGGCGGCGA+AGG 0.499526 3_2:+86082817 None:intergenic
TCTAATTTCGCTGATGGTCG+GGG 0.499933 3_2:-86081988 Msa0433630:intron
AGAACTAAGAATCTGCATAA+GGG 0.500689 3_2:+86082092 None:intergenic
GGGAAAGGCGGTGATGCTGC+TGG 0.505470 3_2:-86082510 Msa0433630:CDS
AAATTAGGCGGAAGAGGCGG+TGG 0.507309 3_2:+86082651 None:intergenic
GATTCTTCCAAAGGCGGTGG+AGG 0.508145 3_2:+86082684 None:intergenic
TGCAAGTGATAACATGGAAT+CGG 0.508476 3_2:-86081711 Msa0433630:CDS
GCGGAAGAGGCGGTGGAGGA+GGG 0.508892 3_2:+86082658 None:intergenic
TTTATGGATATGGATAATAT+GGG 0.509779 3_2:-86082375 Msa0433630:CDS
AATCATGCCATGCATAAAGA+AGG 0.514400 3_2:+86080271 None:intergenic
TCTTGTGTGTAAATGACTTA+CGG 0.517302 3_2:+86081260 None:intergenic
AAAGACGATCATACTTCAGC+AGG 0.518195 3_2:-86080187 Msa0433630:CDS
CAGCACCGCAAGATCGGCGG+TGG 0.518911 3_2:-86082573 Msa0433630:CDS
GGTGAGAAATTAGGCGGAAG+AGG 0.523496 3_2:+86082645 None:intergenic
TGAGCCAGCTATAAAGAGCT+TGG 0.525015 3_2:+86080376 None:intergenic
AGGCACATAATTGAACACTT+AGG 0.530110 3_2:+86079599 None:intergenic
ACATCAACCTCAACTTTCTC+CGG 0.530753 3_2:+86082240 None:intergenic
GTGCTTTCCATAATTAAGGA+TGG 0.531625 3_2:+86079627 None:intergenic
TCATTCAAGGGTGTATCCAA+TGG 0.533090 3_2:-86081688 Msa0433630:CDS
TCCAAGCCCTTCTTTATGCA+TGG 0.533581 3_2:-86080278 Msa0433630:CDS
AAGTCGATTGCCCACGCTCA+AGG 0.535916 3_2:-86079829 Msa0433630:CDS
CCATGGCATAACCGAATGAC+CGG 0.539341 3_2:+86082808 None:intergenic
AACATGGAATCGGTCATTCA+AGG 0.539680 3_2:-86081701 Msa0433630:CDS
GGTGTATCCAATGGGGAGGG+TGG 0.541152 3_2:-86081679 Msa0433630:CDS
CCGGTCATTCGGTTATGCCA+TGG 0.542014 3_2:-86082808 Msa0433630:exon
GCCATGCATAAAGAAGGGCT+TGG 0.543280 3_2:+86080277 None:intergenic
CTTTATCACTGCAGAAAATG+AGG 0.543457 3_2:+86080206 None:intergenic
AATTGAACTTGAGAATGAGA+AGG 0.545352 3_2:+86082955 None:intergenic
GATATGGATAATATGGGAAG+AGG 0.547615 3_2:-86082369 Msa0433630:CDS
GGCGGTGGAATTAGTGGTGG+AGG 0.549912 3_2:-86082558 Msa0433630:CDS
GAGAGGACAGAAGAGAGAGA+AGG 0.550486 3_2:+86083024 None:intergenic
CCAGAAGCATTTACAACGAA+GGG 0.551600 3_2:-86080082 Msa0433630:CDS
ACAGAGCGTTTGAGAGAAGC+CGG 0.551771 3_2:+86082624 None:intergenic
GGATCAGAATGAAGAGGCGG+TGG 0.555414 3_2:+86082711 None:intergenic
TTTGGACAAGTTGTTAGCAT+GGG 0.555933 3_2:-86081611 Msa0433630:CDS
GCATAAAGAAGGGCTTGGAT+TGG 0.556125 3_2:+86080282 None:intergenic
AAGAGGCGGTGGAGGAGGGA+GGG 0.557539 3_2:+86082662 None:intergenic
TAATTCCACCGCCGATCTTG+CGG 0.558644 3_2:+86082568 None:intergenic
TGCTGTAACTGCAACGACAC+AGG 0.563887 3_2:+86082591 None:intergenic
AAATACAAACAATCCGATCT+CGG 0.564703 3_2:-86080031 Msa0433630:CDS
ACATGGAATCGGTCATTCAA+GGG 0.566506 3_2:-86081700 Msa0433630:CDS
TTCTTGGAATCCGGCAAAGG+CGG 0.566851 3_2:+86082417 None:intergenic
AGGGATTCTTCCAAAGGCGG+TGG 0.573076 3_2:+86082681 None:intergenic
AGTTTCGCCGTGAGCGTAGT+CGG 0.573795 3_2:+86082758 None:intergenic
TTTCAGGATGGCCAATATGT+GGG 0.579247 3_2:-86080583 Msa0433630:intron
AATGAAGAAGGTGAAATTGA+AGG 0.580423 3_2:-86082318 Msa0433630:CDS
ATTTGAGTGAAGAATGAGAA+TGG 0.580527 3_2:+86082986 None:intergenic
TATTGTTGATATGCAGTCGA+TGG 0.581443 3_2:-86081235 Msa0433630:CDS
GAAGAGGTGGAAGAAGGGAA+AGG 0.581945 3_2:-86082525 Msa0433630:CDS
GTATGCTGCTTTCTTGTGTG+AGG 0.582315 3_2:+86079719 None:intergenic
TGGAGGTGACATTGTTGAAG+AGG 0.585814 3_2:-86082541 Msa0433630:CDS
GAAACTCTATGAAGAAGTCA+AGG 0.586792 3_2:-86081584 Msa0433630:intron
CGCACCACCACCTTGAGCGT+GGG 0.587071 3_2:+86079819 None:intergenic
GAGGTGGAAGAAGGGAAAGG+CGG 0.588013 3_2:-86082522 Msa0433630:CDS
CCGCACCACCACCTTGAGCG+TGG 0.589202 3_2:+86079818 None:intergenic
GTAGTCGGAGAGAGCGGCGC+CGG 0.592343 3_2:+86082773 None:intergenic
GCCTTAAGATAGTGTTGTGT+AGG 0.592871 3_2:-86079580 Msa0433630:three_prime_UTR
GAGTCATGCAAGTGATAACA+TGG 0.593246 3_2:-86081717 Msa0433630:CDS
CTCCCAGAAGGAGGAGAAGG+TGG 0.593485 3_2:+86082456 None:intergenic
CAGAAGCATTTACAACGAAG+GGG 0.593582 3_2:-86080081 Msa0433630:CDS
AGGTGACATTGTTGAAGAGG+TGG 0.593877 3_2:-86082538 Msa0433630:CDS
GGTGCGGTCGTAATGATGCT+TGG 0.594455 3_2:+86080473 None:intergenic
GGACTCAACAGTTTCTGAAG+TGG 0.596338 3_2:-86081214 Msa0433630:CDS
GGTTAGAACCTACAAAGCTA+TGG 0.600579 3_2:+86079648 None:intergenic
TTACTCCCAGAAGGAGGAGA+AGG 0.601774 3_2:+86082453 None:intergenic
CCACGCTCAAGGTGGTGGTG+CGG 0.602808 3_2:-86079818 Msa0433630:CDS
ATGTTCTTGGAATCCGGCAA+AGG 0.605757 3_2:+86082414 None:intergenic
GAGTGAAGAATGAGAATGGT+TGG 0.606760 3_2:+86082990 None:intergenic
TCTTCCGCCTAATTTCTCAC+CGG 0.608905 3_2:-86082643 Msa0433630:CDS
ATCATGCCATGCATAAAGAA+GGG 0.611365 3_2:+86080272 None:intergenic
GAAGTTAAAGGAGAAATGTG+AGG 0.611782 3_2:-86080154 Msa0433630:CDS
AAACTAGAAAGGAATTCTTG+AGG 0.618185 3_2:-86080131 Msa0433630:CDS
GGCGGCGAAGGCGTTACGAG+CGG 0.618691 3_2:+86082829 None:intergenic
GGAGGGAGGGATTCTTCCAA+AGG 0.620699 3_2:+86082675 None:intergenic
CAAGGGTGTATCCAATGGGG+AGG 0.622313 3_2:-86081683 Msa0433630:CDS
GCTCTCTCCGACTACGCTCA+CGG 0.622545 3_2:-86082765 Msa0433630:CDS
ATCTGCATAAGGGTAACAGA+AGG 0.622988 3_2:+86082102 None:intergenic
ACCAGAAGCATTTACAACGA+AGG 0.625698 3_2:-86080083 Msa0433630:CDS
CTGAACAAGCAGAAGAAGCG+TGG 0.626103 3_2:-86081318 Msa0433630:CDS
GGCATCACTTTACTCCCAGA+AGG 0.626290 3_2:+86082444 None:intergenic
TTTGCCGGATTCCAAGAACA+TGG 0.627689 3_2:-86082412 Msa0433630:CDS
CCTTAAGATAGTGTTGTGTA+GGG 0.628462 3_2:-86079579 Msa0433630:three_prime_UTR
GACGATCATACTTCAGCAGG+AGG 0.629306 3_2:-86080184 Msa0433630:CDS
GGTTGGTGACAAAGAGAGAG+AGG 0.629558 3_2:+86083007 None:intergenic
ATCGGCGGTGGAATTAGTGG+TGG 0.630858 3_2:-86082561 Msa0433630:CDS
TGAGATTGAACCCAAGACAC+CGG 0.633573 3_2:-86082259 Msa0433630:CDS
GGAGCATGAACATGTACATG+AGG 0.635866 3_2:-86082208 Msa0433630:CDS
GATTACATTCCAAAGCTGCA+CGG 0.636378 3_2:+86080452 None:intergenic
CAAGACACCGGAGAAAGTTG+AGG 0.641109 3_2:-86082247 Msa0433630:CDS
TGAGGATGATGTGATAAGAG+AGG 0.648109 3_2:-86082190 Msa0433630:CDS
GTGAGCGTAGTCGGAGAGAG+CGG 0.649810 3_2:+86082767 None:intergenic
GAGAAATTAGGCGGAAGAGG+CGG 0.650849 3_2:+86082648 None:intergenic
ATCACTTTACTCCCAGAAGG+AGG 0.651215 3_2:+86082447 None:intergenic
GGTTTAGGATCAGAATGAAG+AGG 0.652248 3_2:+86082705 None:intergenic
TTACAGCACCGCAAGATCGG+CGG 0.652795 3_2:-86082576 Msa0433630:CDS
GAGAATGTTGATGTTAATGG+AGG 0.660500 3_2:-86082294 Msa0433630:CDS
TGATGTTAATGGAGGACATG+TGG 0.660982 3_2:-86082286 Msa0433630:CDS
AAGGGTGTATCCAATGGGGA+GGG 0.663838 3_2:-86081682 Msa0433630:CDS
TGTTAATGGAGGACATGTGG+AGG 0.675457 3_2:-86082283 Msa0433630:CDS
TGGCATAACCGAATGACCGG+CGG 0.678360 3_2:+86082811 None:intergenic
CATTCCAAAGCTGCACGGTG+CGG 0.678361 3_2:+86080457 None:intergenic
GAAGCCGGTGAGAAATTAGG+CGG 0.684519 3_2:+86082639 None:intergenic
GGGAGGGATTCTTCCAAAGG+CGG 0.689716 3_2:+86082678 None:intergenic
GTTTAGAAGAGCAATTAAGG+TGG 0.690000 3_2:-86082127 Msa0433630:CDS
GAGTATAATCCGATAGCGCG+CGG 0.690717 3_2:+86079881 None:intergenic
GGTGGCGCGTGAGAAGCGTG+AGG 0.695449 3_2:+86082474 None:intergenic
TGTAACTGCAACGACACAGG+CGG 0.699824 3_2:+86082594 None:intergenic
AGAAGCATTTACAACGAAGG+GGG 0.702303 3_2:-86080080 Msa0433630:CDS
TTAGGATCAGAATGAAGAGG+CGG 0.705551 3_2:+86082708 None:intergenic
TCGATTGCCCACGCTCAAGG+TGG 0.713047 3_2:-86079826 Msa0433630:CDS
TAACAACTTGTCCAAAACAG+TGG 0.715371 3_2:+86081618 None:intergenic
ATTCAAGGGTGTATCCAATG+GGG 0.730624 3_2:-86081686 Msa0433630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATAAGTGAAATTTTAAAA+AGG + chr3_2:86081248-86081267 None:intergenic 15.0%
!! ATATTCTATAAAATTGTAAG+TGG - chr3_2:86081741-86081760 Msa0433630:CDS 15.0%
!! TACAACATTAAAATAAACTT+CGG + chr3_2:86081854-86081873 None:intergenic 15.0%
!! TTTATGGATATGGATAATAT+GGG - chr3_2:86080263-86080282 Msa0433630:CDS 20.0%
!! ACTGAAGTTGAATAAAATAA+AGG + chr3_2:86080702-86080721 None:intergenic 20.0%
!!! CAACTAGAGTTTTAAAAAAA+AGG + chr3_2:86080807-86080826 None:intergenic 20.0%
!!! GAAAGTATAAATGTCAAAAA+TGG + chr3_2:86081093-86081112 None:intergenic 20.0%
!!! TAGAATATATTTTGCAACAT+CGG + chr3_2:86081729-86081748 None:intergenic 20.0%
!!! TAATAAAATGCTTTTCGATT+GGG + chr3_2:86081772-86081791 None:intergenic 20.0%
!!! ATAATAAAATGCTTTTCGAT+TGG + chr3_2:86081773-86081792 None:intergenic 20.0%
!! TTCCATTTTCTAACTCAAAA+TGG - chr3_2:86079705-86079724 Msa0433630:three_prime_UTR 25.0%
!! TCCATTTTCTAACTCAAAAT+GGG - chr3_2:86079706-86079725 Msa0433630:three_prime_UTR 25.0%
!! GGATTATTTCTTTATGGATA+TGG - chr3_2:86080253-86080272 Msa0433630:CDS 25.0%
! CTTTATGGATATGGATAATA+TGG - chr3_2:86080262-86080281 Msa0433630:CDS 25.0%
!!! GAGTTTTAAAAAAAAGGTCT+AGG + chr3_2:86080801-86080820 None:intergenic 25.0%
! ATCATTAGGAAAAACTAAAG+CGG - chr3_2:86081355-86081374 Msa0433630:CDS 25.0%
! CAAATATAGATTGAGAATCT+AGG + chr3_2:86081807-86081826 None:intergenic 25.0%
! TAAAATAAACTTCGGTATCT+AGG + chr3_2:86081846-86081865 None:intergenic 25.0%
!!! TTTTCAATTTGTTCTGGTAT+TGG - chr3_2:86081920-86081939 Msa0433630:intron 25.0%
! TGATGCAAAAAATAGAAACT+TGG + chr3_2:86081988-86082007 None:intergenic 25.0%
!!! TCTATTTTTTGCATCACAAA+TGG - chr3_2:86081992-86082011 Msa0433630:CDS 25.0%
! TGATATTTCTCAAGATCATA+AGG - chr3_2:86082136-86082155 Msa0433630:CDS 25.0%
! AAATGTGCTTTCCATAATTA+AGG + chr3_2:86083018-86083037 None:intergenic 25.0%
ATTTGAGTGAAGAATGAGAA+TGG + chr3_2:86079655-86079674 None:intergenic 30.0%
ATTGAACTTGAGAATGAGAA+GGG + chr3_2:86079685-86079704 None:intergenic 30.0%
AATTGAACTTGAGAATGAGA+AGG + chr3_2:86079686-86079705 None:intergenic 30.0%
!!! ACCCATTTTGAGTTAGAAAA+TGG + chr3_2:86079710-86079729 None:intergenic 30.0%
AATGAAGAAGGTGAAATTGA+AGG - chr3_2:86080320-86080339 Msa0433630:CDS 30.0%
!! TGAGGTTGATGTGTATAATA+AGG - chr3_2:86080409-86080428 Msa0433630:CDS 30.0%
TGAGTTTAGAAGAGCAATTA+AGG - chr3_2:86080508-86080527 Msa0433630:CDS 30.0%
AGAACTAAGAATCTGCATAA+GGG + chr3_2:86080549-86080568 None:intergenic 30.0%
TATCATTCTAATTTCGCTGA+TGG - chr3_2:86080644-86080663 Msa0433630:intron 30.0%
CAATTTGGATAATGACATCA+AGG + chr3_2:86080774-86080793 None:intergenic 30.0%
TGATGTCATTATCCAAATTG+CGG - chr3_2:86080774-86080793 Msa0433630:intron 30.0%
!!! GTTTAAGGTTTTTAGTTAGC+TGG - chr3_2:86080833-86080852 Msa0433630:intron 30.0%
AAAGCTAACTAACAAGATGA+AGG + chr3_2:86081115-86081134 None:intergenic 30.0%
!! TAACTTGTTGCTCTTAATGA+GGG - chr3_2:86081218-86081237 Msa0433630:CDS 30.0%
! TTTTCCTAATGATTCAACAC+TGG + chr3_2:86081348-86081367 None:intergenic 30.0%
TCTTGTGTGTAAATGACTTA+CGG + chr3_2:86081381-86081400 None:intergenic 30.0%
! ATAACAAGAGCAACAAGTTT+TGG + chr3_2:86081476-86081495 None:intergenic 30.0%
!! AAACTTGTTGCTCTTGTTAT+TGG - chr3_2:86081476-86081495 Msa0433630:intron 30.0%
!! AACTTGTTGCTCTTGTTATT+GGG - chr3_2:86081477-86081496 Msa0433630:intron 30.0%
CTAAGATATCAAATAAGCAC+AGG + chr3_2:86081545-86081564 None:intergenic 30.0%
GTGCTTATTTGATATCTTAG+TGG - chr3_2:86081545-86081564 Msa0433630:intron 30.0%
! TTGGTTAAAGGAAGTTTTCA+AGG + chr3_2:86081630-86081649 None:intergenic 30.0%
CTAACATTCAAGACTAATTC+AGG + chr3_2:86081683-86081702 None:intergenic 30.0%
TGTAAAGTGACACGATTATT+AGG + chr3_2:86081885-86081904 None:intergenic 30.0%
!! TCCTAGTTTTCAATTTGTTC+TGG - chr3_2:86081914-86081933 Msa0433630:intron 30.0%
ACCAGAACAAATTGAAAACT+AGG + chr3_2:86081918-86081937 None:intergenic 30.0%
! TTGGTGTGTTAGCAAAATTT+TGG + chr3_2:86081958-86081977 None:intergenic 30.0%
ATAGAAACTTGGTACTTGAT+TGG + chr3_2:86081977-86081996 None:intergenic 30.0%
TCAAGTAGATTCATGAATCA+TGG + chr3_2:86082031-86082050 None:intergenic 30.0%
GAATCTACTTGATTTCTTTC+AGG - chr3_2:86082039-86082058 Msa0433630:CDS 30.0%
GAGAAATATCAAGAGATTTG+AGG + chr3_2:86082127-86082146 None:intergenic 30.0%
! TTTGGAATGTAATCCAAGAA+TGG - chr3_2:86082195-86082214 Msa0433630:CDS 30.0%
TTGGAATGTAATCCAAGAAT+GGG - chr3_2:86082196-86082215 Msa0433630:CDS 30.0%
!!! GAGACGAGATTTTTTCTTTT+AGG + chr3_2:86082316-86082335 None:intergenic 30.0%
AAACTAGAAAGGAATTCTTG+AGG - chr3_2:86082507-86082526 Msa0433630:CDS 30.0%
!! AAAACCAAGCTTTTGAAGAA+TGG - chr3_2:86082531-86082550 Msa0433630:CDS 30.0%
ATCATCTCTTTCTAGATCAT+CGG + chr3_2:86082585-86082604 None:intergenic 30.0%
AAATACAAACAATCCGATCT+CGG - chr3_2:86082607-86082626 Msa0433630:CDS 30.0%
!!! AAATTTTGCCATAGCTTTGT+AGG - chr3_2:86082982-86083001 Msa0433630:five_prime_UTR 30.0%
GTTCTAACCATCCTTAATTA+TGG - chr3_2:86083004-86083023 Msa0433630:five_prime_UTR 30.0%
! CTTCACGCATTAAGTTTTTG+CGG + chr3_2:86079783-86079802 None:intergenic 35.0%
! GGCTTGGGATTATTTCTTTA+TGG - chr3_2:86080247-86080266 Msa0433630:CDS 35.0%
GATATGGATAATATGGGAAG+AGG - chr3_2:86080269-86080288 Msa0433630:CDS 35.0%
GATGAGATTGAGAATGAAGA+AGG - chr3_2:86080308-86080327 Msa0433630:CDS 35.0%
GGTGAGAATGTTGATGTTAA+TGG - chr3_2:86080341-86080360 Msa0433630:CDS 35.0%
GAGAATGTTGATGTTAATGG+AGG - chr3_2:86080344-86080363 Msa0433630:CDS 35.0%
GTTTAGAAGAGCAATTAAGG+TGG - chr3_2:86080511-86080530 Msa0433630:CDS 35.0%
GAGAACTAAGAATCTGCATA+AGG + chr3_2:86080550-86080569 None:intergenic 35.0%
ATTCTAATTTCGCTGATGGT+CGG - chr3_2:86080648-86080667 Msa0433630:intron 35.0%
!!! GTGACCAAAGTTTTAAATCG+CGG - chr3_2:86080736-86080755 Msa0433630:intron 35.0%
!!! TGACCAAAGTTTTAAATCGC+GGG - chr3_2:86080737-86080756 Msa0433630:intron 35.0%
CTCTAGTTGTGTGAAGTTTA+AGG - chr3_2:86080818-86080837 Msa0433630:intron 35.0%
! TGATTTGCAATGACATTAGC+AGG - chr3_2:86080878-86080897 Msa0433630:intron 35.0%
TGCAAGTGATAACATGGAAT+CGG - chr3_2:86080927-86080946 Msa0433630:intron 35.0%
TAACAACTTGTCCAAAACAG+TGG + chr3_2:86081023-86081042 None:intergenic 35.0%
! TTTTGGACAAGTTGTTAGCA+TGG - chr3_2:86081026-86081045 Msa0433630:intron 35.0%
TTTGGACAAGTTGTTAGCAT+GGG - chr3_2:86081027-86081046 Msa0433630:intron 35.0%
GAAACTCTATGAAGAAGTCA+AGG - chr3_2:86081054-86081073 Msa0433630:intron 35.0%
!! GTAACTTGTTGCTCTTAATG+AGG - chr3_2:86081217-86081236 Msa0433630:CDS 35.0%
TATTGTTGATATGCAGTCGA+TGG - chr3_2:86081403-86081422 Msa0433630:intron 35.0%
! TATTGGGTAAGTATTGCCAA+TGG - chr3_2:86081493-86081512 Msa0433630:intron 35.0%
! ATTGGGTAAGTATTGCCAAT+GGG - chr3_2:86081494-86081513 Msa0433630:intron 35.0%
! ATATCTCTTTGACTTCCCAT+TGG + chr3_2:86081512-86081531 None:intergenic 35.0%
!! GTTTTCAAGGAAGTTCACAA+CGG + chr3_2:86081617-86081636 None:intergenic 35.0%
! GAAATTTAGGACGTTGTCAT+TGG + chr3_2:86081649-86081668 None:intergenic 35.0%
GTCCTAAATTTCATGCTTGT+TGG - chr3_2:86081657-86081676 Msa0433630:CDS 35.0%
CTACTTGATTTCTTTCAGGA+TGG - chr3_2:86082043-86082062 Msa0433630:CDS 35.0%
GAACATATTCTCCCACATAT+TGG + chr3_2:86082069-86082088 None:intergenic 35.0%
!!! TCTTTTAGGTTGCTTTCGAT+GGG + chr3_2:86082302-86082321 None:intergenic 35.0%
!!! TTCTTTTAGGTTGCTTTCGA+TGG + chr3_2:86082303-86082322 None:intergenic 35.0%
ATCATGCCATGCATAAAGAA+GGG + chr3_2:86082369-86082388 None:intergenic 35.0%
AATCATGCCATGCATAAAGA+AGG + chr3_2:86082370-86082389 None:intergenic 35.0%
CTTTATCACTGCAGAAAATG+AGG + chr3_2:86082435-86082454 None:intergenic 35.0%
GAAGTTAAAGGAGAAATGTG+AGG - chr3_2:86082484-86082503 Msa0433630:CDS 35.0%
GAAATGTGAGGAAACTAGAA+AGG - chr3_2:86082496-86082515 Msa0433630:CDS 35.0%
TCATCTCTTTCTAGATCATC+GGG + chr3_2:86082584-86082603 None:intergenic 35.0%
GTGCTTTCCATAATTAAGGA+TGG + chr3_2:86083014-86083033 None:intergenic 35.0%
AGGCACATAATTGAACACTT+AGG + chr3_2:86083042-86083061 None:intergenic 35.0%
CCTTAAGATAGTGTTGTGTA+GGG - chr3_2:86083059-86083078 Msa0433630:five_prime_UTR 35.0%
GAGTGAAGAATGAGAATGGT+TGG + chr3_2:86079651-86079670 None:intergenic 40.0%
TTAGGATCAGAATGAAGAGG+CGG + chr3_2:86079933-86079952 None:intergenic 40.0%
! GGTTTAGGATCAGAATGAAG+AGG + chr3_2:86079936-86079955 None:intergenic 40.0%
ATTGTTGAAGAGGTGGAAGA+AGG - chr3_2:86080107-86080126 Msa0433630:CDS 40.0%
TTGTTGAAGAGGTGGAAGAA+GGG - chr3_2:86080108-86080127 Msa0433630:CDS 40.0%
ATAATCCCAAGCCATGTTCT+TGG + chr3_2:86080240-86080259 None:intergenic 40.0%
TGATGTTAATGGAGGACATG+TGG - chr3_2:86080352-86080371 Msa0433630:CDS 40.0%
ACATCAACCTCAACTTTCTC+CGG + chr3_2:86080401-86080420 None:intergenic 40.0%
TGAGGATGATGTGATAAGAG+AGG - chr3_2:86080448-86080467 Msa0433630:CDS 40.0%
ATTGCTCTTCTAAACTCAGC+AGG + chr3_2:86080506-86080525 None:intergenic 40.0%
ATCTGCATAAGGGTAACAGA+AGG + chr3_2:86080539-86080558 None:intergenic 40.0%
CTAAGATGCTTGAAGCTACT+AGG - chr3_2:86080615-86080634 Msa0433630:intron 40.0%
TTCTAATTTCGCTGATGGTC+GGG - chr3_2:86080649-86080668 Msa0433630:intron 40.0%
TTAGCTGGAATTGACATGCA+AGG - chr3_2:86080848-86080867 Msa0433630:intron 40.0%
GAGTCATGCAAGTGATAACA+TGG - chr3_2:86080921-86080940 Msa0433630:intron 40.0%
AACATGGAATCGGTCATTCA+AGG - chr3_2:86080937-86080956 Msa0433630:intron 40.0%
ACATGGAATCGGTCATTCAA+GGG - chr3_2:86080938-86080957 Msa0433630:intron 40.0%
! TCATTCAAGGGTGTATCCAA+TGG - chr3_2:86080950-86080969 Msa0433630:intron 40.0%
! CATTCAAGGGTGTATCCAAT+GGG - chr3_2:86080951-86080970 Msa0433630:intron 40.0%
! ATTCAAGGGTGTATCCAATG+GGG - chr3_2:86080952-86080971 Msa0433630:intron 40.0%
! AGAAACACATGCCACTGTTT+TGG - chr3_2:86081009-86081028 Msa0433630:intron 40.0%
TAGAAAACACGACAGTACAG+TGG + chr3_2:86081165-86081184 None:intergenic 40.0%
TTCACTTATTGTCGACAGCA+AGG - chr3_2:86081257-86081276 Msa0433630:CDS 40.0%
ACAACTGAGAATCGCGAATA+TGG + chr3_2:86081451-86081470 None:intergenic 40.0%
! AGGACGTTGTCATTGGTTAA+AGG + chr3_2:86081642-86081661 None:intergenic 40.0%
GGCCAACAAGCATGAAATTT+AGG + chr3_2:86081662-86081681 None:intergenic 40.0%
! TTGCAACATCGGTTACTACT+AGG + chr3_2:86081718-86081737 None:intergenic 40.0%
TTTCAGGATGGCCAATATGT+GGG - chr3_2:86082055-86082074 Msa0433630:CDS 40.0%
! GGTCTGTAACTATTTTCAGC+TGG + chr3_2:86082106-86082125 None:intergenic 40.0%
GATTACATTCCAAAGCTGCA+CGG + chr3_2:86082189-86082208 None:intergenic 40.0%
CAAATTGTGACTCCCATTCT+TGG + chr3_2:86082211-86082230 None:intergenic 40.0%
ACATCCAAGCTCTTTATAGC+TGG - chr3_2:86082258-86082277 Msa0433630:CDS 40.0%
AAAGACGATCATACTTCAGC+AGG - chr3_2:86082451-86082470 Msa0433630:CDS 40.0%
GGAGGAAGAGATGAAGTTAA+AGG - chr3_2:86082472-86082491 Msa0433630:CDS 40.0%
GGTACCATTCTTCAAAAGCT+TGG + chr3_2:86082538-86082557 None:intergenic 40.0%
!! ACCAGAAGCATTTACAACGA+AGG - chr3_2:86082555-86082574 Msa0433630:CDS 40.0%
!! CCAGAAGCATTTACAACGAA+GGG - chr3_2:86082556-86082575 Msa0433630:CDS 40.0%
!! CAGAAGCATTTACAACGAAG+GGG - chr3_2:86082557-86082576 Msa0433630:CDS 40.0%
!! AGAAGCATTTACAACGAAGG+GGG - chr3_2:86082558-86082577 Msa0433630:CDS 40.0%
GGTTAGAACCTACAAAGCTA+TGG + chr3_2:86082993-86083012 None:intergenic 40.0%
GCCTTAAGATAGTGTTGTGT+AGG - chr3_2:86083058-86083077 Msa0433630:five_prime_UTR 40.0%
CCCTACACAACACTATCTTA+AGG + chr3_2:86083062-86083081 None:intergenic 40.0%
TCTTCCGCCTAATTTCTCAC+CGG - chr3_2:86079995-86080014 Msa0433630:CDS 45.0%
AGAGAAGCCGGTGAGAAATT+AGG + chr3_2:86080005-86080024 None:intergenic 45.0%
TGGAGGTGACATTGTTGAAG+AGG - chr3_2:86080097-86080116 Msa0433630:CDS 45.0%
AGGTGACATTGTTGAAGAGG+TGG - chr3_2:86080100-86080119 Msa0433630:CDS 45.0%
ATCACTTTACTCCCAGAAGG+AGG + chr3_2:86080194-86080213 None:intergenic 45.0%
ATGTTCTTGGAATCCGGCAA+AGG + chr3_2:86080227-86080246 None:intergenic 45.0%
TTTGCCGGATTCCAAGAACA+TGG - chr3_2:86080226-86080245 Msa0433630:CDS 45.0%
CAAGCCATGTTCTTGGAATC+CGG + chr3_2:86080233-86080252 None:intergenic 45.0%
GGATTCCAAGAACATGGCTT+GGG - chr3_2:86080232-86080251 Msa0433630:CDS 45.0%
GGGAAGAGGTTCTTTGAATG+AGG - chr3_2:86080283-86080302 Msa0433630:CDS 45.0%
TGTTAATGGAGGACATGTGG+AGG - chr3_2:86080355-86080374 Msa0433630:CDS 45.0%
TGAGATTGAACCCAAGACAC+CGG - chr3_2:86080379-86080398 Msa0433630:CDS 45.0%
TCAACTTTCTCCGGTGTCTT+GGG + chr3_2:86080392-86080411 None:intergenic 45.0%
GGAGCATGAACATGTACATG+AGG - chr3_2:86080430-86080449 Msa0433630:CDS 45.0%
TCTAATTTCGCTGATGGTCG+GGG - chr3_2:86080650-86080669 Msa0433630:intron 45.0%
! GTGCCCGCGATTTAAAACTT+TGG + chr3_2:86080743-86080762 None:intergenic 45.0%
! AAAGGTCTAGGACCGCAATT+TGG + chr3_2:86080789-86080808 None:intergenic 45.0%
GGAATTGACATGCAAGGTTG+AGG - chr3_2:86080854-86080873 Msa0433630:intron 45.0%
! GGACTCAACAGTTTCTGAAG+TGG - chr3_2:86081424-86081443 Msa0433630:intron 45.0%
ATCGGTTACTACTAGGATGC+TGG + chr3_2:86081711-86081730 None:intergenic 45.0%
CTTTCAGGATGGCCAATATG+TGG - chr3_2:86082054-86082073 Msa0433630:CDS 45.0%
TGAGCCAGCTATAAAGAGCT+TGG + chr3_2:86082265-86082284 None:intergenic 45.0%
!!! ATTGGTGGATTTTGGGCTCT+TGG + chr3_2:86082341-86082360 None:intergenic 45.0%
!!! GGCTTGGATTGGTGGATTTT+GGG + chr3_2:86082348-86082367 None:intergenic 45.0%
! TAAAGAAGGGCTTGGATTGG+TGG + chr3_2:86082356-86082375 None:intergenic 45.0%
GCATAAAGAAGGGCTTGGAT+TGG + chr3_2:86082359-86082378 None:intergenic 45.0%
TCCAAGCCCTTCTTTATGCA+TGG - chr3_2:86082360-86082379 Msa0433630:CDS 45.0%
CCCTTCGTTGTAAATGCTTC+TGG + chr3_2:86082559-86082578 None:intergenic 45.0%
ACAAACTGCTTCTCCGAGAT+CGG + chr3_2:86082623-86082642 None:intergenic 45.0%
GTGAGGATGCAGCTTAACTT+AGG + chr3_2:86082905-86082924 None:intergenic 45.0%
!! GTATGCTGCTTTCTTGTGTG+AGG + chr3_2:86082922-86082941 None:intergenic 45.0%
GAGAGGACAGAAGAGAGAGA+AGG + chr3_2:86079617-86079636 None:intergenic 50.0%
!! GGTTGGTGACAAAGAGAGAG+AGG + chr3_2:86079634-86079653 None:intergenic 50.0%
CCATGGCATAACCGAATGAC+CGG + chr3_2:86079833-86079852 None:intergenic 50.0%
GCCATGGCTCTCAAAAACAC+CGG - chr3_2:86079846-86079865 Msa0433630:CDS 50.0%
GAGAAATTAGGCGGAAGAGG+CGG + chr3_2:86079993-86080012 None:intergenic 50.0%
GGTGAGAAATTAGGCGGAAG+AGG + chr3_2:86079996-86080015 None:intergenic 50.0%
GAAGCCGGTGAGAAATTAGG+CGG + chr3_2:86080002-86080021 None:intergenic 50.0%
! ACAGAGCGTTTGAGAGAAGC+CGG + chr3_2:86080017-86080036 None:intergenic 50.0%
TGTAACTGCAACGACACAGG+CGG + chr3_2:86080047-86080066 None:intergenic 50.0%
TGCTGTAACTGCAACGACAC+AGG + chr3_2:86080050-86080069 None:intergenic 50.0%
CAGTTACAGCACCGCAAGAT+CGG - chr3_2:86080059-86080078 Msa0433630:CDS 50.0%
TAATTCCACCGCCGATCTTG+CGG + chr3_2:86080073-86080092 None:intergenic 50.0%
AAGATCGGCGGTGGAATTAG+TGG - chr3_2:86080074-86080093 Msa0433630:CDS 50.0%
GAAGAGGTGGAAGAAGGGAA+AGG - chr3_2:86080113-86080132 Msa0433630:CDS 50.0%
TTACTCCCAGAAGGAGGAGA+AGG + chr3_2:86080188-86080207 None:intergenic 50.0%
GGCATCACTTTACTCCCAGA+AGG + chr3_2:86080197-86080216 None:intergenic 50.0%
TTCTTGGAATCCGGCAAAGG+CGG + chr3_2:86080224-86080243 None:intergenic 50.0%
CGGATTCCAAGAACATGGCT+TGG - chr3_2:86080231-86080250 Msa0433630:CDS 50.0%
CTCAACTTTCTCCGGTGTCT+TGG + chr3_2:86080393-86080412 None:intergenic 50.0%
CAAGACACCGGAGAAAGTTG+AGG - chr3_2:86080391-86080410 Msa0433630:CDS 50.0%
! AAGGGTGTATCCAATGGGGA+GGG - chr3_2:86080956-86080975 Msa0433630:intron 50.0%
! ATCTTTTCCACCCTCCCCAT+TGG + chr3_2:86080969-86080988 None:intergenic 50.0%
CTGAACAAGCAGAAGAAGCG+TGG - chr3_2:86081320-86081339 Msa0433630:CDS 50.0%
! GGCGCCAGTGTTGAATCATT+AGG - chr3_2:86081341-86081360 Msa0433630:CDS 50.0%
!!! GGGCTTGGATTGGTGGATTT+TGG + chr3_2:86082349-86082368 None:intergenic 50.0%
GCCATGCATAAAGAAGGGCT+TGG + chr3_2:86082364-86082383 None:intergenic 50.0%
GACGATCATACTTCAGCAGG+AGG - chr3_2:86082454-86082473 Msa0433630:CDS 50.0%
!!! GCAAGCGAGTTTTGAGACTC+TGG + chr3_2:86082727-86082746 None:intergenic 50.0%
GAGTATAATCCGATAGCGCG+CGG + chr3_2:86082760-86082779 None:intergenic 50.0%
TGGCATAACCGAATGACCGG+CGG + chr3_2:86079830-86079849 None:intergenic 55.0%
CCGGTCATTCGGTTATGCCA+TGG - chr3_2:86079830-86079849 Msa0433630:CDS 55.0%
!! GCCGGTGTTTTTGAGAGCCA+TGG + chr3_2:86079850-86079869 None:intergenic 55.0%
AGTTTCGCCGTGAGCGTAGT+CGG + chr3_2:86079883-86079902 None:intergenic 55.0%
GGATCAGAATGAAGAGGCGG+TGG + chr3_2:86079930-86079949 None:intergenic 55.0%
TCCTAAACCTCCACCGCCTT+TGG - chr3_2:86079947-86079966 Msa0433630:CDS 55.0%
TCCAAAGGCGGTGGAGGTTT+AGG + chr3_2:86079951-86079970 None:intergenic 55.0%
GATTCTTCCAAAGGCGGTGG+AGG + chr3_2:86079957-86079976 None:intergenic 55.0%
AGGGATTCTTCCAAAGGCGG+TGG + chr3_2:86079960-86079979 None:intergenic 55.0%
GGGAGGGATTCTTCCAAAGG+CGG + chr3_2:86079963-86079982 None:intergenic 55.0%
GGAGGGAGGGATTCTTCCAA+AGG + chr3_2:86079966-86079985 None:intergenic 55.0%
AAATTAGGCGGAAGAGGCGG+TGG + chr3_2:86079990-86080009 None:intergenic 55.0%
TTACAGCACCGCAAGATCGG+CGG - chr3_2:86080062-86080081 Msa0433630:CDS 55.0%
ATCGGCGGTGGAATTAGTGG+TGG - chr3_2:86080077-86080096 Msa0433630:CDS 55.0%
GAGGTGGAAGAAGGGAAAGG+CGG - chr3_2:86080116-86080135 Msa0433630:CDS 55.0%
! CAAGGGTGTATCCAATGGGG+AGG - chr3_2:86080955-86080974 Msa0433630:intron 55.0%
GGTGCGGTCGTAATGATGCT+TGG + chr3_2:86082168-86082187 None:intergenic 55.0%
CATTCCAAAGCTGCACGGTG+CGG + chr3_2:86082184-86082203 None:intergenic 55.0%
!! GGTGGATTTTGGGCTCTTGG+CGG + chr3_2:86082338-86082357 None:intergenic 55.0%
GCAGATTTCGCTAGCTCGTC+AGG + chr3_2:86082407-86082426 None:intergenic 55.0%
AAGTCGATTGCCCACGCTCA+AGG - chr3_2:86082809-86082828 Msa0433630:exon 55.0%
GTGAGCGTAGTCGGAGAGAG+CGG + chr3_2:86079874-86079893 None:intergenic 60.0%
GCTCTCTCCGACTACGCTCA+CGG - chr3_2:86079873-86079892 Msa0433630:CDS 60.0%
GGCGGTGGAATTAGTGGTGG+AGG - chr3_2:86080080-86080099 Msa0433630:CDS 60.0%
CGCCACCTTCTCCTCCTTCT+GGG - chr3_2:86080180-86080199 Msa0433630:CDS 60.0%
CTCCCAGAAGGAGGAGAAGG+TGG + chr3_2:86080185-86080204 None:intergenic 60.0%
TTGGAATCCGGCAAAGGCGG+TGG + chr3_2:86080221-86080240 None:intergenic 60.0%
GGTGTATCCAATGGGGAGGG+TGG - chr3_2:86080959-86080978 Msa0433630:intron 60.0%
TGAGCTCTTCCGCGCGCTAT+CGG - chr3_2:86082748-86082767 Msa0433630:CDS 60.0%
TCGATTGCCCACGCTCAAGG+TGG - chr3_2:86082812-86082831 Msa0433630:five_prime_UTR 60.0%
ATTGCCCACGCTCAAGGTGG+TGG - chr3_2:86082815-86082834 Msa0433630:five_prime_UTR 60.0%
AACCGAATGACCGGCGGCGA+AGG + chr3_2:86079824-86079843 None:intergenic 65.0%
AAGAGGCGGTGGAGGAGGGA+GGG + chr3_2:86079979-86079998 None:intergenic 65.0%
TTAGGCGGAAGAGGCGGTGG+AGG + chr3_2:86079987-86080006 None:intergenic 65.0%
GGGAAAGGCGGTGATGCTGC+TGG - chr3_2:86080128-86080147 Msa0433630:CDS 65.0%
GCGCCACCTTCTCCTCCTTC+TGG - chr3_2:86080179-86080198 Msa0433630:CDS 65.0%
GAATCCGGCAAAGGCGGTGG+CGG + chr3_2:86080218-86080237 None:intergenic 65.0%
ACGACCGCACCGTGCAGCTT+TGG - chr3_2:86082177-86082196 Msa0433630:CDS 65.0%
GATAGCGCGCGGAAGAGCTC+AGG + chr3_2:86082749-86082768 None:intergenic 65.0%
CGCACCACCACCTTGAGCGT+GGG + chr3_2:86082822-86082841 None:intergenic 65.0%
! CCACGCTCAAGGTGGTGGTG+CGG - chr3_2:86082820-86082839 Msa0433630:five_prime_UTR 65.0%
!! GGCGGCGAAGGCGTTACGAG+CGG + chr3_2:86079812-86079831 None:intergenic 70.0%
GCTCGTAACGCCTTCGCCGC+CGG - chr3_2:86079811-86079830 Msa0433630:exon 70.0%
CGCCTTCGCCGCCGGTCATT+CGG - chr3_2:86079819-86079838 Msa0433630:CDS 70.0%
GTAGTCGGAGAGAGCGGCGC+CGG + chr3_2:86079868-86079887 None:intergenic 70.0%
GAAGAGGCGGTGGAGGAGGG+AGG + chr3_2:86079980-86079999 None:intergenic 70.0%
GCGGAAGAGGCGGTGGAGGA+GGG + chr3_2:86079983-86080002 None:intergenic 70.0%
CAGCACCGCAAGATCGGCGG+TGG - chr3_2:86080065-86080084 Msa0433630:CDS 70.0%
! GGTGGCGCGTGAGAAGCGTG+AGG + chr3_2:86080167-86080186 None:intergenic 70.0%
GATGCCGCCACCGCCTTTGC+CGG - chr3_2:86080211-86080230 Msa0433630:CDS 70.0%
CCGCACCACCACCTTGAGCG+TGG + chr3_2:86082823-86082842 None:intergenic 70.0%
GGCGGAAGAGGCGGTGGAGG+AGG + chr3_2:86079984-86080003 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 86079574 86083086 86079574 ID=Msa0433630;Name=Msa0433630
chr3_2 mRNA 86079574 86083086 86079574 ID=Msa0433630-mRNA-1;Parent=Msa0433630;Name=Msa0433630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=275|1|1|1|1|1|4|239|669
chr3_2 exon 86079574 86080599 86079574 ID=Msa0433630-mRNA-1:exon:24784;Parent=Msa0433630-mRNA-1
chr3_2 exon 86081162 86081385 86081162 ID=Msa0433630-mRNA-1:exon:24783;Parent=Msa0433630-mRNA-1
chr3_2 exon 86081585 86081760 86081585 ID=Msa0433630-mRNA-1:exon:24782;Parent=Msa0433630-mRNA-1
chr3_2 exon 86081989 86083086 86081989 ID=Msa0433630-mRNA-1:exon:24781;Parent=Msa0433630-mRNA-1
chr3_2 five_prime_UTR 86082812 86083086 86082812 ID=Msa0433630-mRNA-1:five_prime_utr;Parent=Msa0433630-mRNA-1
chr3_2 CDS 86081989 86082811 86081989 ID=Msa0433630-mRNA-1:cds;Parent=Msa0433630-mRNA-1
chr3_2 CDS 86081585 86081760 86081585 ID=Msa0433630-mRNA-1:cds;Parent=Msa0433630-mRNA-1
chr3_2 CDS 86081162 86081385 86081162 ID=Msa0433630-mRNA-1:cds;Parent=Msa0433630-mRNA-1
chr3_2 CDS 86079813 86080599 86079813 ID=Msa0433630-mRNA-1:cds;Parent=Msa0433630-mRNA-1
chr3_2 three_prime_UTR 86079574 86079812 86079574 ID=Msa0433630-mRNA-1:three_prime_utr;Parent=Msa0433630-mRNA-1
Gene Sequence

>Msa0433630

ATGGCTCTCAAAAACACCGGCGCCGCTCTCTCCGACTACGCTCACGGCGAAACTCATCTCGACGACATTGAGCTTCATCCACCGCCTCTTCATTCTGATCCTAAACCTCCACCGCCTTTGGAAGAATCCCTCCCTCCTCCACCGCCTCTTCCGCCTAATTTCTCACCGGCTTCTCTCAAACGCTCTGTAACATTGCCGCCTGTGTCGTTGCAGTTACAGCACCGCAAGATCGGCGGTGGAATTAGTGGTGGAGGTGACATTGTTGAAGAGGTGGAAGAAGGGAAAGGCGGTGATGCTGCTGGACAAGTTCACGCGCCTCACGCTTCTCACGCGCCACCTTCTCCTCCTTCTGGGAGTAAAGTGATGCCGCCACCGCCTTTGCCGGATTCCAAGAACATGGCTTGGGATTATTTCTTTATGGATATGGATAATATGGGAAGAGGTTCTTTGAATGAGGAAGATGAGATTGAGAATGAAGAAGGTGAAATTGAAGGTGAGAATGTTGATGTTAATGGAGGACATGTGGAGGATGAGATTGAACCCAAGACACCGGAGAAAGTTGAGGTTGATGTGTATAATAAGGAGCATGAACATGTACATGAGGATGATGTGATAAGAGAGGCTACACATATTATTGAACATTCTAAAACTGCTCCTGCTGAGTTTAGAAGAGCAATTAAGGTGGTTCCTTCTGTTACCCTTATGCAGATTCTTAGTTCTCTTGATGATCATTTTCTTAAAGCTTCTGAGACTGCTCAAGATGTTTCTAAGATGCTTGAAGCTACTAGGTTGCATTATCATTCTAATTTCGCTGATGGTCGGGGTCACATTGATCATTCTGCTAGAGTCATGCAAGTGATAACATGGAATCGGTCATTCAAGGGTGTATCCAATGGGGAGGGTGGAAAAGATGATTTTGATTCTGAAGATAAAGAAACACATGCCACTGTTTTGGACAAGTTGTTAGCATGGGAAAAGAAACTCTATGAAGAAGTCAAGCAAGGTGAGCTTATGAAGTTTGAATATCAAAGAAAAGTTGCAATTCTGAACAAGCAGAAGAAGCGTGGCGCCAGTGTTGAATCATTAGGAAAAACTAAAGCGGCCGTAAGTCATTTACACACAAGATATATTGTTGATATGCAGTCGATGGACTCAACAGTTTCTGAAGTGGACCATATTCGCGATTCTCAGTTGTATCCAAAACTTGTTGCTCTTGTTATTGGGATGGCCAATATGTGGGAGAATATGTTCATGCATCATGACAGCCAGCTGAAAATAGTTACAGACCTCAAATCTCTTGATATTTCTCAAGATCATAAGGAAACAACCAAGCATCATTACGACCGCACCGTGCAGCTTTGGAATGTAATCCAAGAATGGGAGTCACAATTTGAGAAGCTTGTGACTCAACAGAAGCATTACATCCAAGCTCTTTATAGCTGGCTCAAGTTAAATCTCATTCCCATCGAAAGCAACCTAAAAGAAAAAATCTCGTCTCCGCCAAGAGCCCAAAATCCACCAATCCAAGCCCTTCTTTATGCATGGCATGATTATCTCGACAAGCTTCCTGACGAGCTAGCGAAATCTGCTATTACCTCATTTTCTGCAGTGATAAAGACGATCATACTTCAGCAGGAGGAAGAGATGAAGTTAAAGGAGAAATGTGAGGAAACTAGAAAGGAATTCTTGAGGAAAAACCAAGCTTTTGAAGAATGGTACCAGAAGCATTTACAACGAAGGGGGCCCGATGATCTAGAAAGAGATGATGTAAATACAAACAATCCGATCTCGGAGAAGCAGTTTGTCGTTGAGAGCTTGAAGAAGAGATTAGAAGAAGAAACTGAATCTCACAAAAAATTGTGTGTTCAAGTAAGAGAGAAATCACTCCAGAGTCTCAAAACTCGCTTGCCTGAGCTCTTCCGCGCGCTATCGGATTATACTCATGCGTGTTCTGATGCTTATGAGAAACTGAAGTCGATTGCCCACGCTCAAGGTGGTGGTGCGGCGTGA
Protein sequence

>Msa0433630

MALKNTGAALSDYAHGETHLDDIELHPPPLHSDPKPPPPLEESLPPPPPLPPNFSPASLKRSVTLPPVSLQLQHRKIGGGISGGGDIVEEVEEGKGGDAAGQVHAPHASHAPPSPPSGSKVMPPPPLPDSKNMAWDYFFMDMDNMGRGSLNEEDEIENEEGEIEGENVDVNGGHVEDEIEPKTPEKVEVDVYNKEHEHVHEDDVIREATHIIEHSKTAPAEFRRAIKVVPSVTLMQILSSLDDHFLKASETAQDVSKMLEATRLHYHSNFADGRGHIDHSARVMQVITWNRSFKGVSNGEGGKDDFDSEDKETHATVLDKLLAWEKKLYEEVKQGELMKFEYQRKVAILNKQKKRGASVESLGKTKAAVSHLHTRYIVDMQSMDSTVSEVDHIRDSQLYPKLVALVIGMANMWENMFMHHDSQLKIVTDLKSLDISQDHKETTKHHYDRTVQLWNVIQEWESQFEKLVTQQKHYIQALYSWLKLNLIPIESNLKEKISSPPRAQNPPIQALLYAWHDYLDKLPDELAKSAITSFSAVIKTIILQQEEEMKLKEKCEETRKEFLRKNQAFEEWYQKHLQRRGPDDLERDDVNTNNPISEKQFVVESLKKRLEEETESHKKLCVQVREKSLQSLKTRLPELFRALSDYTHACSDAYEKLKSIAHAQGGGAA*