Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638930 | AES90604.1 | 99.083 | 109 | 1 | 0 | 1 | 109 | 1 | 109 | 3.76e-68 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638930 | G7JV56 | 99.083 | 109 | 1 | 0 | 1 | 109 | 1 | 109 | 1.79e-68 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101810 | Msa0638930 | 0.836512 | 8.958286e-57 | -8.615850e-47 |
| Msa0101820 | Msa0638930 | 0.818110 | 2.325026e-52 | -8.615850e-47 |
| Msa0626090 | Msa0638930 | -0.813190 | 2.901919e-51 | -8.615850e-47 |
| Msa0638930 | Msa0640510 | 0.816084 | 6.634631e-52 | -8.615850e-47 |
| Msa0638930 | Msa0697090 | 0.898116 | 7.267934e-77 | -8.615850e-47 |
| Msa0638930 | Msa0735660 | -0.805271 | 1.446842e-49 | -8.615850e-47 |
| Msa0638930 | Msa0753720 | -0.813849 | 2.078787e-51 | -8.615850e-47 |
| Msa0638930 | Msa0766630 | -0.814800 | 1.280847e-51 | -8.615850e-47 |
| Msa0638930 | Msa0773540 | -0.820136 | 8.044040e-53 | -8.615850e-47 |
| Msa0638930 | Msa0802470 | 0.813046 | 3.120213e-51 | -8.615850e-47 |
| Msa0638930 | Msa0810220 | -0.805257 | 1.457039e-49 | -8.615850e-47 |
| Msa0638930 | Msa0843780 | 0.810160 | 1.323637e-50 | -8.615850e-47 |
| Msa0638930 | Msa0927290 | -0.817837 | 2.680751e-52 | -8.615850e-47 |
| Msa0638930 | Msa0997080 | -0.817019 | 4.096448e-52 | -8.615850e-47 |
| Msa0638930 | Msa1007150 | 0.818809 | 1.614394e-52 | -8.615850e-47 |
| Msa0638930 | Msa1035310 | -0.835123 | 2.014985e-56 | -8.615850e-47 |
| Msa0638930 | Msa1075080 | 0.822880 | 1.869349e-53 | -8.615850e-47 |
| Msa0638930 | Msa1075220 | 0.837062 | 6.488646e-57 | -8.615850e-47 |
| Msa0638930 | Msa1079430 | -0.832735 | 7.976813e-56 | -8.615850e-47 |
| Msa0638930 | Msa1116130 | 0.801738 | 7.816467e-49 | -8.615850e-47 |
| Msa0638930 | Msa1116440 | -0.842051 | 3.273766e-58 | -8.615850e-47 |
| Msa0638930 | Msa1121490 | -0.802693 | 4.970099e-49 | -8.615850e-47 |
| Msa0638930 | Msa1137570 | -0.804655 | 1.946679e-49 | -8.615850e-47 |
| Msa0638930 | Msa1139000 | 0.816423 | 5.573437e-52 | -8.615850e-47 |
| Msa0638930 | Msa1144720 | 0.829559 | 4.810680e-55 | -8.615850e-47 |
| Msa0638930 | Msa1162550 | 0.810882 | 9.238718e-51 | -8.615850e-47 |
| Msa0638930 | Msa1179770 | -0.812434 | 4.247771e-51 | -8.615850e-47 |
| Msa0638930 | Msa1239720 | -0.828543 | 8.482300e-55 | -8.615850e-47 |
| Msa0638930 | Msa1284680 | -0.800842 | 1.192273e-48 | -8.615850e-47 |
| Msa0638930 | Msa1307070 | -0.824784 | 6.689035e-54 | -8.615850e-47 |
| Msa0638930 | Msa1316200 | -0.829970 | 3.819918e-55 | -8.615850e-47 |
| Msa0638930 | Msa1373430 | 0.808690 | 2.736514e-50 | -8.615850e-47 |
| Msa0638930 | Msa1379850 | -0.824444 | 8.044055e-54 | -8.615850e-47 |
| Msa0638930 | Msa1384330 | -0.824750 | 6.814774e-54 | -8.615850e-47 |
| Msa0638930 | Msa1388510 | -0.815568 | 8.646979e-52 | -8.615850e-47 |
| Msa0638930 | Msa1451620 | 0.840452 | 8.622235e-58 | -8.615850e-47 |
| Msa0133980 | Msa0638930 | 0.801061 | 1.075335e-48 | -8.615850e-47 |
| Msa0183010 | Msa0638930 | 0.805133 | 1.546394e-49 | -8.615850e-47 |
| Msa0215320 | Msa0638930 | 0.802217 | 6.228683e-49 | -8.615850e-47 |
| Msa0223410 | Msa0638930 | 0.813725 | 2.213171e-51 | -8.615850e-47 |
| Msa0230640 | Msa0638930 | 0.807966 | 3.904914e-50 | -8.615850e-47 |
| Msa0381600 | Msa0638930 | 0.810670 | 1.027207e-50 | -8.615850e-47 |
| Msa0389320 | Msa0638930 | -0.825047 | 5.799346e-54 | -8.615850e-47 |
| Msa0436370 | Msa0638930 | -0.823083 | 1.676571e-53 | -8.615850e-47 |
| Msa0469940 | Msa0638930 | 0.818093 | 2.346471e-52 | -8.615850e-47 |
| Msa0285450 | Msa0638930 | -0.809845 | 1.547293e-50 | -8.615850e-47 |
| Msa0313560 | Msa0638930 | -0.808419 | 3.125676e-50 | -8.615850e-47 |
| Msa0344690 | Msa0638930 | 0.822419 | 2.392884e-53 | -8.615850e-47 |
| Msa0354800 | Msa0638930 | 0.863098 | 3.171334e-64 | -8.615850e-47 |
| Msa0532350 | Msa0638930 | -0.806810 | 6.866651e-50 | -8.615850e-47 |
| Msa0542480 | Msa0638930 | -0.827192 | 1.791458e-54 | -8.615850e-47 |
| Msa0555720 | Msa0638930 | -0.805414 | 1.350401e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638930 | MtrunA17_Chr4g0049721 | 80.814 | 172 | 2 | 1 | 1 | 172 | 1 | 141 | 1.62e-60 | 184 |
| Msa0638930 | MtrunA17_Chr2g0279691 | 43.046 | 151 | 45 | 4 | 25 | 168 | 47 | 163 | 4.45e-23 | 89.7 |
| Msa0638930 | MtrunA17_Chr2g0279681 | 41.818 | 110 | 48 | 3 | 50 | 143 | 2 | 111 | 1.76e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638930 | AT5G09570.1 | 46.857 | 175 | 50 | 4 | 1 | 170 | 1 | 137 | 5.85e-45 | 145 |
| Msa0638930 | AT5G64400.1 | 54.032 | 124 | 24 | 2 | 47 | 170 | 52 | 142 | 3.79e-31 | 110 |
| Msa0638930 | AT5G64400.3 | 69.444 | 72 | 20 | 1 | 40 | 111 | 1 | 70 | 1.43e-21 | 85.1 |
| Msa0638930 | AT5G64400.2 | 69.231 | 65 | 18 | 1 | 47 | 111 | 52 | 114 | 4.10e-17 | 74.7 |
Find 77 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAGACAAATAAAATTTAT+TGG | 0.160648 | 4_3:-34556713 | None:intergenic |
| TTTATGGCAGGTATGGCTTT+TGG | 0.258248 | 4_3:+34555488 | Msa0638930:intron |
| GCACCGACTTCAAGCTCTTT+TGG | 0.290138 | 4_3:+34555611 | Msa0638930:CDS |
| TTCTTTAAACATCTGAAGAT+TGG | 0.314777 | 4_3:+34556990 | Msa0638930:three_prime_UTR |
| GCCTTGTAAAAGTTAAGTTT+TGG | 0.324210 | 4_3:-34557067 | None:intergenic |
| TAACTGCTCTAGGCATGTTT+TGG | 0.334364 | 4_3:+34556626 | Msa0638930:exon |
| AGAAAACTTGGAAATGGTCT+TGG | 0.392994 | 4_3:-34554262 | None:intergenic |
| GGCGGTATTCTTAGTGGCAT+TGG | 0.395537 | 4_3:+34555362 | Msa0638930:CDS |
| AACCCTAGAAAACTTGGAAA+TGG | 0.396000 | 4_3:-34554268 | None:intergenic |
| CTAGCATATCCATGTAAAAC+TGG | 0.399015 | 4_3:-34556565 | None:intergenic |
| ACAGGCTGCTAACATTGATA+TGG | 0.417889 | 4_3:+34556030 | Msa0638930:intron |
| CGTGTTCCCATTCGTTTATC+CGG | 0.419406 | 4_3:-34554231 | None:intergenic |
| CTGCTAATAAAGACGGCAAT+AGG | 0.432341 | 4_3:-34556865 | None:intergenic |
| GTTGGTCTGGATTGACTTTG+TGG | 0.434691 | 4_3:-34556892 | None:intergenic |
| TATATTCTATGAAGTTGGTC+TGG | 0.441285 | 4_3:-34556905 | None:intergenic |
| TATTTAAACCCTAGAAAACT+TGG | 0.442628 | 4_3:-34554274 | None:intergenic |
| CAGGGCCGTGGATGCTGTTG+TGG | 0.451033 | 4_3:+34555532 | Msa0638930:CDS |
| ACCATGGCACGCCGTAGCTC+CGG | 0.466038 | 4_3:+34554379 | Msa0638930:exon |
| GAAAACTTGGAAATGGTCTT+GGG | 0.469304 | 4_3:-34554261 | None:intergenic |
| CCACCACTCTGAGGATTAGC+TGG | 0.472443 | 4_3:-34555338 | None:intergenic |
| AACTACTGCTTCATGTTGAA+TGG | 0.473377 | 4_3:-34555564 | None:intergenic |
| TGCAATGGCACACAGGGCCG+TGG | 0.474780 | 4_3:+34555520 | Msa0638930:CDS |
| GTTTGTTACTCTGTCTAAGA+TGG | 0.478212 | 4_3:+34556658 | Msa0638930:three_prime_UTR |
| CGTGGTGCAGCACGTGGAGC+TGG | 0.485293 | 4_3:-34555141 | None:intergenic |
| GCAAGTATATTCTATGAAGT+TGG | 0.493959 | 4_3:-34556910 | None:intergenic |
| GGTGGCGGCGGTATTCTTAG+TGG | 0.495349 | 4_3:+34555356 | Msa0638930:CDS |
| TTCATAGAATATACTTGCTG+TGG | 0.505655 | 4_3:+34556915 | Msa0638930:three_prime_UTR |
| AATGAGTATGTAACTGCTCT+AGG | 0.511721 | 4_3:+34556616 | Msa0638930:exon |
| TAGATTATTCGAGTAAGATC+CGG | 0.518003 | 4_3:+34554212 | None:intergenic |
| TACTGTAAAATCTTTCAAAG+TGG | 0.518542 | 4_3:-34556107 | None:intergenic |
| GCTGCACCACGTCCTGCTCC+AGG | 0.519152 | 4_3:+34555153 | Msa0638930:CDS |
| TCATTTAAGATCATTGCTGT+TGG | 0.525819 | 4_3:-34556076 | None:intergenic |
| TCCGGAGCTACGGCGTGCCA+TGG | 0.527864 | 4_3:-34554380 | None:intergenic |
| AAAGAGCTTGAAGTCGGTGC+AGG | 0.533911 | 4_3:-34555608 | None:intergenic |
| CTCTGAGGATTAGCTGGAGG+AGG | 0.538286 | 4_3:-34555332 | None:intergenic |
| CTAATAAAGACGGCAATAGG+AGG | 0.552348 | 4_3:-34556862 | None:intergenic |
| GCTGTTGGTTGCATTTCAGA+AGG | 0.554729 | 4_3:-34556061 | None:intergenic |
| AGGACCCACAACAGCATCCA+CGG | 0.556091 | 4_3:-34555537 | None:intergenic |
| TAAGATCCGGATAAACGAAT+GGG | 0.557734 | 4_3:+34554225 | Msa0638930:five_prime_UTR |
| GCTAATCCTCAGAGTGGTGG+CGG | 0.558257 | 4_3:+34555341 | Msa0638930:CDS |
| GCAGGACGTGGTGCAGCACG+TGG | 0.561238 | 4_3:-34555147 | None:intergenic |
| AAATCAAAACATGCTAAACC+AGG | 0.561285 | 4_3:-34556814 | None:intergenic |
| TGCATGCAATATTCATTCAA+AGG | 0.562704 | 4_3:+34555640 | Msa0638930:CDS |
| AGGGCCGTGGATGCTGTTGT+GGG | 0.564421 | 4_3:+34555533 | Msa0638930:CDS |
| TGGAAGTGCAATGGCACACA+GGG | 0.567260 | 4_3:+34555514 | Msa0638930:CDS |
| GAACGTTACCTCCGGAGCTA+CGG | 0.573066 | 4_3:-34554390 | None:intergenic |
| CATTAATATATACCTGGAGC+AGG | 0.580772 | 4_3:-34555165 | None:intergenic |
| TAGAATATACTTGCTGTGGG+TGG | 0.581323 | 4_3:+34556919 | Msa0638930:three_prime_UTR |
| ACATGAAGCAGTAGTTAATG+AGG | 0.581873 | 4_3:+34555571 | Msa0638930:CDS |
| AATCCTCAGAGTGGTGGCGG+CGG | 0.582840 | 4_3:+34555344 | Msa0638930:CDS |
| TATATACCTGGAGCAGGACG+TGG | 0.583895 | 4_3:-34555159 | None:intergenic |
| TCATAGAATATACTTGCTGT+GGG | 0.585331 | 4_3:+34556916 | Msa0638930:three_prime_UTR |
| ATTGGTTCAACCATTGCTCA+AGG | 0.588907 | 4_3:+34555380 | Msa0638930:CDS |
| CTGGAAGTGCAATGGCACAC+AGG | 0.589957 | 4_3:+34555513 | Msa0638930:CDS |
| GATGGATACAACTGCTTGTG+TGG | 0.592085 | 4_3:+34556676 | Msa0638930:three_prime_UTR |
| CGGCGTGCCATGGTTGTCGA+AGG | 0.593977 | 4_3:-34554370 | None:intergenic |
| GCTTGACATACCTTGAGCAA+TGG | 0.600932 | 4_3:-34555390 | None:intergenic |
| GTAAGATCCGGATAAACGAA+TGG | 0.604032 | 4_3:+34554224 | Msa0638930:five_prime_UTR |
| ATGGCACGCCGTAGCTCCGG+AGG | 0.604368 | 4_3:+34554382 | Msa0638930:CDS |
| GAAGATTGGATAACATCCGT+GGG | 0.607233 | 4_3:+34557004 | Msa0638930:three_prime_UTR |
| TGCTGATCTCAGTTCCGTAG+TGG | 0.607249 | 4_3:-34556538 | None:intergenic |
| AAATTTACCTTCGACAACCA+TGG | 0.610496 | 4_3:+34554363 | Msa0638930:exon |
| TGGACAGCTGCTAATAAAGA+CGG | 0.613721 | 4_3:-34556872 | None:intergenic |
| TGAAGATTGGATAACATCCG+TGG | 0.618885 | 4_3:+34557003 | Msa0638930:three_prime_UTR |
| CCAGCTAATCCTCAGAGTGG+TGG | 0.634085 | 4_3:+34555338 | Msa0638930:CDS |
| CTGCCAAAAGAGCTTGAAGT+CGG | 0.641855 | 4_3:-34555614 | None:intergenic |
| TTGCAGTGCATCAACCACTA+CGG | 0.648457 | 4_3:+34556524 | Msa0638930:intron |
| AATAAGTCTTTAGCACCCCA+CGG | 0.652465 | 4_3:-34557020 | None:intergenic |
| GAGCAGTTACATACTCATTG+TGG | 0.664410 | 4_3:-34556612 | None:intergenic |
| AATCAAAACATGCTAAACCA+GGG | 0.666601 | 4_3:-34556813 | None:intergenic |
| CCACTCTGAGGATTAGCTGG+AGG | 0.669248 | 4_3:-34555335 | None:intergenic |
| GATTAGCTGGAGGAGGAGCG+TGG | 0.675718 | 4_3:-34555325 | None:intergenic |
| CCTCCAGCTAATCCTCAGAG+TGG | 0.682091 | 4_3:+34555335 | Msa0638930:CDS |
| ATACCGCCGCCACCACTCTG+AGG | 0.688047 | 4_3:-34555347 | None:intergenic |
| AAACGAAGGAGTAATAATCG+CGG | 0.716789 | 4_3:-34554326 | None:intergenic |
| GCTTCATGTTGAATGGTGCG+AGG | 0.729803 | 4_3:-34555557 | None:intergenic |
| AAGATTGGATAACATCCGTG+GGG | 0.764004 | 4_3:+34557005 | Msa0638930:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATTGTAACGATAAT+AGG | - | chr4_3:34554453-34554472 | None:intergenic | 15.0% |
| !!! | TTTTGAAAAATTGTGTATTT+TGG | + | chr4_3:34554548-34554567 | Msa0638930:intron | 15.0% |
| !!! | TTTATTTTAAATTGCTGTAT+TGG | + | chr4_3:34554721-34554740 | Msa0638930:intron | 15.0% |
| !!! | TTATTTTAAATTGCTGTATT+GGG | + | chr4_3:34554722-34554741 | Msa0638930:intron | 15.0% |
| !! | TTCAATCTAAGTATAAATTA+GGG | - | chr4_3:34554781-34554800 | None:intergenic | 15.0% |
| !! | ATTCAATCTAAGTATAAATT+AGG | - | chr4_3:34554782-34554801 | None:intergenic | 15.0% |
| !! | AAATCTTAAATAGTAGTTAT+TGG | + | chr4_3:34555722-34555741 | Msa0638930:intron | 15.0% |
| !! | AATTATGTTTGTATTCATAT+TGG | + | chr4_3:34556263-34556282 | Msa0638930:intron | 15.0% |
| !!! | TGATTTTTTTTCAATTATTG+TGG | + | chr4_3:34556831-34556850 | Msa0638930:three_prime_UTR | 15.0% |
| !! | AATACAACATAAAACTGAAA+GGG | - | chr4_3:34554476-34554495 | None:intergenic | 20.0% |
| !! | AAATACAACATAAAACTGAA+AGG | - | chr4_3:34554477-34554496 | None:intergenic | 20.0% |
| !! | AATAAAATAACAGATATCCA+AGG | - | chr4_3:34554707-34554726 | None:intergenic | 20.0% |
| !! | AATAAAAGTAAACCATTCAT+CGG | - | chr4_3:34555049-34555068 | None:intergenic | 20.0% |
| !! | ATACTACATTAATATATACC+TGG | - | chr4_3:34555174-34555193 | None:intergenic | 20.0% |
| !! | TTGTCTAAATAAGATATTGT+GGG | + | chr4_3:34555254-34555273 | Msa0638930:intron | 20.0% |
| !!! | TGAATGAAATTTTCATTTTC+TGG | + | chr4_3:34555447-34555466 | Msa0638930:intron | 20.0% |
| !! | TGGTACTAAATTTCAATTTA+TGG | + | chr4_3:34555472-34555491 | Msa0638930:intron | 20.0% |
| !!! | TATTTAAGATTTAAACCAAC+AGG | - | chr4_3:34555714-34555733 | None:intergenic | 20.0% |
| !!! | AGTTGAAAACAAATCTTTTA+AGG | - | chr4_3:34555807-34555826 | None:intergenic | 20.0% |
| !! | ATAATTAAGATCATAGTTGT+TGG | - | chr4_3:34556224-34556243 | None:intergenic | 20.0% |
| !!! | TCCAATAAATTTTATTTGTC+TGG | + | chr4_3:34556712-34556731 | Msa0638930:three_prime_UTR | 20.0% |
| !! | ACCAGACAAATAAAATTTAT+TGG | - | chr4_3:34556716-34556735 | None:intergenic | 20.0% |
| !!! | ATTGATACTTGAAAGTTTTT+TGG | + | chr4_3:34556780-34556799 | Msa0638930:three_prime_UTR | 20.0% |
| ! | TATTTAAACCCTAGAAAACT+TGG | - | chr4_3:34554277-34554296 | None:intergenic | 25.0% |
| ! | GCTAAAATAACTACGAAAAA+TGG | - | chr4_3:34554607-34554626 | None:intergenic | 25.0% |
| ! | GCAAAGCAAAAAATATCTAA+AGG | - | chr4_3:34554681-34554700 | None:intergenic | 25.0% |
| ! | TGTGTATTCAATACTTGATA+TGG | + | chr4_3:34554829-34554848 | Msa0638930:intron | 25.0% |
| ! | TAATGTTATGATAATAGCTC+TGG | + | chr4_3:34554876-34554895 | Msa0638930:intron | 25.0% |
| ! | GTTATAGTTTAGTAGGTTAT+TGG | + | chr4_3:34554900-34554919 | Msa0638930:intron | 25.0% |
| !!! | CAAAGTGAAATTTTGATTGT+TGG | + | chr4_3:34554964-34554983 | Msa0638930:intron | 25.0% |
| ! | CACAAAGAAAGAAAACAATA+GGG | - | chr4_3:34555104-34555123 | None:intergenic | 25.0% |
| ! | ACACAAAGAAAGAAAACAAT+AGG | - | chr4_3:34555105-34555124 | None:intergenic | 25.0% |
| !! | ATTGTTTTCTTTCTTTGTGT+AGG | + | chr4_3:34555105-34555124 | Msa0638930:intron | 25.0% |
| !! | CAATATCTTATTTAGACAAC+AGG | - | chr4_3:34555253-34555272 | None:intergenic | 25.0% |
| ! | GTTGTCTAAATAAGATATTG+TGG | + | chr4_3:34555253-34555272 | Msa0638930:intron | 25.0% |
| ! | TGTCTAAATAAGATATTGTG+GGG | + | chr4_3:34555255-34555274 | Msa0638930:intron | 25.0% |
| !!! | GAAATTTTCATTTTCTGGTT+TGG | + | chr4_3:34555452-34555471 | Msa0638930:intron | 25.0% |
| ! | ACTAAATTTCAATTTATGGC+AGG | + | chr4_3:34555476-34555495 | Msa0638930:intron | 25.0% |
| !!! | GATTTGTTTTCAACTTTGAA+AGG | + | chr4_3:34555812-34555831 | Msa0638930:intron | 25.0% |
| !!! | TCTTCTAATGTTTTGAAAAC+CGG | + | chr4_3:34555852-34555871 | Msa0638930:intron | 25.0% |
| ! | TACTGTAAAATCTTTCAAAG+TGG | - | chr4_3:34556110-34556129 | None:intergenic | 25.0% |
| !!! | CTGTTTCTTTTCTTTTTGTA+AGG | + | chr4_3:34556195-34556214 | Msa0638930:intron | 25.0% |
| ! | AAAATTTCTCAATGACAACA+AGG | - | chr4_3:34556459-34556478 | None:intergenic | 25.0% |
| ! | TTCTTTAAACATCTGAAGAT+TGG | + | chr4_3:34556990-34557009 | Msa0638930:three_prime_UTR | 25.0% |
| !! | CCTTGTAAAAGTTAAGTTTT+GGG | - | chr4_3:34557069-34557088 | None:intergenic | 25.0% |
| TAGAAGCTGAAAAAAAACGA+AGG | - | chr4_3:34554343-34554362 | None:intergenic | 30.0% | |
| ! | TTTCGCATACTATCTTTTCT+AGG | + | chr4_3:34554495-34554514 | Msa0638930:intron | 30.0% |
| ! | TTCGCATACTATCTTTTCTA+GGG | + | chr4_3:34554496-34554515 | Msa0638930:intron | 30.0% |
| !!! | CTTTTCTAGGGTTTTCTTTT+CGG | + | chr4_3:34554508-34554527 | Msa0638930:intron | 30.0% |
| GATTCATAACTTCCCATAAT+CGG | - | chr4_3:34554642-34554661 | None:intergenic | 30.0% | |
| !!! | ATTTTTTGCTTTGCATTCCT+TGG | + | chr4_3:34554687-34554706 | Msa0638930:intron | 30.0% |
| !!! | GTGAAATTTTGATTGTTGGT+TGG | + | chr4_3:34554968-34554987 | Msa0638930:intron | 30.0% |
| !! | ATAACAATAAAAGAAGCACC+AGG | - | chr4_3:34555077-34555096 | None:intergenic | 30.0% |
| !! | GTTTTCGTGTTTTTTAGCAA+AGG | - | chr4_3:34555212-34555231 | None:intergenic | 30.0% |
| !!! | TAAATGTTGCTTTTGCGTAT+TGG | + | chr4_3:34555417-34555436 | Msa0638930:intron | 30.0% |
| ATTTCAATTTATGGCAGGTA+TGG | + | chr4_3:34555481-34555500 | Msa0638930:intron | 30.0% | |
| TGCATGCAATATTCATTCAA+AGG | + | chr4_3:34555640-34555659 | Msa0638930:CDS | 30.0% | |
| TAGGAAAACAACATACATCT+TGG | - | chr4_3:34555670-34555689 | None:intergenic | 30.0% | |
| !!! | TGTATGTTGTTTTCCTAGTT+CGG | + | chr4_3:34555673-34555692 | Msa0638930:intron | 30.0% |
| TTATTGCTTGAAATTCCTGT+TGG | + | chr4_3:34555696-34555715 | Msa0638930:intron | 30.0% | |
| TACTGTAAAGTCTTTCAAAC+TGG | - | chr4_3:34555969-34555988 | None:intergenic | 30.0% | |
| AAACCTGCAAATACTATAAC+AGG | + | chr4_3:34556012-34556031 | Msa0638930:intron | 30.0% | |
| ! | TCATTTAAGATCATTGCTGT+TGG | - | chr4_3:34556079-34556098 | None:intergenic | 30.0% |
| AATCAAAACATGCTAAACCA+GGG | - | chr4_3:34556816-34556835 | None:intergenic | 30.0% | |
| AAATCAAAACATGCTAAACC+AGG | - | chr4_3:34556817-34556836 | None:intergenic | 30.0% | |
| ! | TATATTCTATGAAGTTGGTC+TGG | - | chr4_3:34556908-34556927 | None:intergenic | 30.0% |
| GCAAGTATATTCTATGAAGT+TGG | - | chr4_3:34556913-34556932 | None:intergenic | 30.0% | |
| ! | TTCATAGAATATACTTGCTG+TGG | + | chr4_3:34556915-34556934 | Msa0638930:three_prime_UTR | 30.0% |
| !! | TCATAGAATATACTTGCTGT+GGG | + | chr4_3:34556916-34556935 | Msa0638930:three_prime_UTR | 30.0% |
| ! | CCCAAAACTTAACTTTTACA+AGG | + | chr4_3:34557066-34557085 | Msa0638930:three_prime_UTR | 30.0% |
| ! | GCCTTGTAAAAGTTAAGTTT+TGG | - | chr4_3:34557070-34557089 | None:intergenic | 30.0% |
| TAAGATCCGGATAAACGAAT+GGG | + | chr4_3:34554225-34554244 | Msa0638930:five_prime_UTR | 35.0% | |
| GAAAACTTGGAAATGGTCTT+GGG | - | chr4_3:34554264-34554283 | None:intergenic | 35.0% | |
| AGAAAACTTGGAAATGGTCT+TGG | - | chr4_3:34554265-34554284 | None:intergenic | 35.0% | |
| ! | AGACCATTTCCAAGTTTTCT+AGG | + | chr4_3:34554265-34554284 | Msa0638930:five_prime_UTR | 35.0% |
| ! | GACCATTTCCAAGTTTTCTA+GGG | + | chr4_3:34554266-34554285 | Msa0638930:five_prime_UTR | 35.0% |
| AACCCTAGAAAACTTGGAAA+TGG | - | chr4_3:34554271-34554290 | None:intergenic | 35.0% | |
| !!! | AATCGCGGAATAGAGTTTTT+TGG | - | chr4_3:34554314-34554333 | None:intergenic | 35.0% |
| AAACGAAGGAGTAATAATCG+CGG | - | chr4_3:34554329-34554348 | None:intergenic | 35.0% | |
| AAATTTACCTTCGACAACCA+TGG | + | chr4_3:34554363-34554382 | Msa0638930:exon | 35.0% | |
| TGATTCTCTTCTCCGATTAT+GGG | + | chr4_3:34554627-34554646 | Msa0638930:intron | 35.0% | |
| !! | TGTATTGGGTTGTTTTGTTG+TGG | + | chr4_3:34554736-34554755 | Msa0638930:intron | 35.0% |
| !! | GATTTGTTGATGCATGTGTT+TGG | + | chr4_3:34554851-34554870 | Msa0638930:intron | 35.0% |
| !! | CTCTGGAGTTATAGTTTAGT+AGG | + | chr4_3:34554893-34554912 | Msa0638930:intron | 35.0% |
| !! | GTTGGTTGGTTTGATCAATA+TGG | + | chr4_3:34554982-34555001 | Msa0638930:intron | 35.0% |
| !! | GTTTACTTTTATTCTCTGCC+TGG | + | chr4_3:34555056-34555075 | Msa0638930:intron | 35.0% |
| CATTAATATATACCTGGAGC+AGG | - | chr4_3:34555168-34555187 | None:intergenic | 35.0% | |
| AACTACTGCTTCATGTTGAA+TGG | - | chr4_3:34555567-34555586 | None:intergenic | 35.0% | |
| ACATGAAGCAGTAGTTAATG+AGG | + | chr4_3:34555571-34555590 | Msa0638930:CDS | 35.0% | |
| TTTCAAGCAATAACCGAACT+AGG | - | chr4_3:34555689-34555708 | None:intergenic | 35.0% | |
| ! | TTTGAGATCATCATAGCTGT+TGG | - | chr4_3:34555935-34555954 | None:intergenic | 35.0% |
| ! | TATGACCTTGCCTTTGTTAT+TGG | + | chr4_3:34556322-34556341 | Msa0638930:intron | 35.0% |
| !! | ATGACCTTGCCTTTGTTATT+GGG | + | chr4_3:34556323-34556342 | Msa0638930:intron | 35.0% |
| GTTAACAGTCCCAATAACAA+AGG | - | chr4_3:34556335-34556354 | None:intergenic | 35.0% | |
| CTAGCATATCCATGTAAAAC+TGG | - | chr4_3:34556568-34556587 | None:intergenic | 35.0% | |
| AATGAGTATGTAACTGCTCT+AGG | + | chr4_3:34556616-34556635 | Msa0638930:exon | 35.0% | |
| ! | GTTTGTTACTCTGTCTAAGA+TGG | + | chr4_3:34556658-34556677 | Msa0638930:three_prime_UTR | 35.0% |
| GTAAGATCCGGATAAACGAA+TGG | + | chr4_3:34554224-34554243 | Msa0638930:five_prime_UTR | 40.0% | |
| CTGATTCTCTTCTCCGATTA+TGG | + | chr4_3:34554626-34554645 | Msa0638930:intron | 40.0% | |
| !! | ATTGGGTTGTTTTGTTGTGG+AGG | + | chr4_3:34554739-34554758 | Msa0638930:intron | 40.0% |
| !! | TTCATCGGTTCACTTGAGAT+CGG | - | chr4_3:34555034-34555053 | None:intergenic | 40.0% |
| ATCTCAAGTGAACCGATGAA+TGG | + | chr4_3:34555034-34555053 | Msa0638930:intron | 40.0% | |
| ! | ATTGGTTCAACCATTGCTCA+AGG | + | chr4_3:34555380-34555399 | Msa0638930:CDS | 40.0% |
| ! | TTTATGGCAGGTATGGCTTT+TGG | + | chr4_3:34555488-34555507 | Msa0638930:intron | 40.0% |
| ! | TTATGGCAGGTATGGCTTTT+GGG | + | chr4_3:34555489-34555508 | Msa0638930:intron | 40.0% |
| AAACCGGCAAACACTATAAC+AGG | + | chr4_3:34555868-34555887 | Msa0638930:intron | 40.0% | |
| ! | GCTGTTGGTTGTCTTTCAAA+AGG | - | chr4_3:34555920-34555939 | None:intergenic | 40.0% |
| CAGCCTGTTATAGTATTTGC+AGG | - | chr4_3:34556018-34556037 | None:intergenic | 40.0% | |
| ACAGGCTGCTAACATTGATA+TGG | + | chr4_3:34556030-34556049 | Msa0638930:intron | 40.0% | |
| AAACCAACAGACGCTATAAC+AGG | + | chr4_3:34556153-34556172 | Msa0638930:intron | 40.0% | |
| ! | TCCAGAGTTCTTTTTGCACT+CGG | - | chr4_3:34556591-34556610 | None:intergenic | 40.0% |
| GAGCAGTTACATACTCATTG+TGG | - | chr4_3:34556615-34556634 | None:intergenic | 40.0% | |
| !! | TAACTGCTCTAGGCATGTTT+TGG | + | chr4_3:34556626-34556645 | Msa0638930:exon | 40.0% |
| !! | TTTTTGGTCTCAAACTTCCC+TGG | + | chr4_3:34556796-34556815 | Msa0638930:three_prime_UTR | 40.0% |
| CTAATAAAGACGGCAATAGG+AGG | - | chr4_3:34556865-34556884 | None:intergenic | 40.0% | |
| CTGCTAATAAAGACGGCAAT+AGG | - | chr4_3:34556868-34556887 | None:intergenic | 40.0% | |
| TGGACAGCTGCTAATAAAGA+CGG | - | chr4_3:34556875-34556894 | None:intergenic | 40.0% | |
| !! | TAGAATATACTTGCTGTGGG+TGG | + | chr4_3:34556919-34556938 | Msa0638930:three_prime_UTR | 40.0% |
| TGAAGATTGGATAACATCCG+TGG | + | chr4_3:34557003-34557022 | Msa0638930:three_prime_UTR | 40.0% | |
| GAAGATTGGATAACATCCGT+GGG | + | chr4_3:34557004-34557023 | Msa0638930:three_prime_UTR | 40.0% | |
| AAGATTGGATAACATCCGTG+GGG | + | chr4_3:34557005-34557024 | Msa0638930:three_prime_UTR | 40.0% | |
| AATAAGTCTTTAGCACCCCA+CGG | - | chr4_3:34557023-34557042 | None:intergenic | 40.0% | |
| !!! | AAGTTTTGGGCACTAATCTG+TGG | - | chr4_3:34557056-34557075 | None:intergenic | 40.0% |
| CGTGTTCCCATTCGTTTATC+CGG | - | chr4_3:34554234-34554253 | None:intergenic | 45.0% | |
| !!! | GAGTTTTTTGGTCGTGCGAA+TGG | - | chr4_3:34554302-34554321 | None:intergenic | 45.0% |
| TGAGATGAGAACGTTACCTC+CGG | - | chr4_3:34554401-34554420 | None:intergenic | 45.0% | |
| GCTTGACATACCTTGAGCAA+TGG | - | chr4_3:34555393-34555412 | None:intergenic | 45.0% | |
| !!! | TTTTGGGACTGGAAGTGCAA+TGG | + | chr4_3:34555505-34555524 | Msa0638930:CDS | 45.0% |
| CTGCCAAAAGAGCTTGAAGT+CGG | - | chr4_3:34555617-34555636 | None:intergenic | 45.0% | |
| CAGCCTGTTATAGTGTTTGC+CGG | - | chr4_3:34555874-34555893 | None:intergenic | 45.0% | |
| ACAGGCTGCTAACATTGCTA+TGG | + | chr4_3:34555886-34555905 | Msa0638930:intron | 45.0% | |
| ! | GCTGTTGGTTGCATTTCAGA+AGG | - | chr4_3:34556064-34556083 | None:intergenic | 45.0% |
| CAGTCCCAATAACAAAGGCA+AGG | - | chr4_3:34556330-34556349 | None:intergenic | 45.0% | |
| TTGCAGTGCATCAACCACTA+CGG | + | chr4_3:34556524-34556543 | Msa0638930:intron | 45.0% | |
| ! | CAGCAAGTGCCAGTTTTACA+TGG | + | chr4_3:34556556-34556575 | Msa0638930:CDS | 45.0% |
| GATGGATACAACTGCTTGTG+TGG | + | chr4_3:34556676-34556695 | Msa0638930:three_prime_UTR | 45.0% | |
| ! | GTTGGTCTGGATTGACTTTG+TGG | - | chr4_3:34556895-34556914 | None:intergenic | 45.0% |
| TATATACCTGGAGCAGGACG+TGG | - | chr4_3:34555162-34555181 | None:intergenic | 50.0% | |
| GGCGGTATTCTTAGTGGCAT+TGG | + | chr4_3:34555362-34555381 | Msa0638930:CDS | 50.0% | |
| ! | TGGAAGTGCAATGGCACACA+GGG | + | chr4_3:34555514-34555533 | Msa0638930:CDS | 50.0% |
| GCTTCATGTTGAATGGTGCG+AGG | - | chr4_3:34555560-34555579 | None:intergenic | 50.0% | |
| AAAGAGCTTGAAGTCGGTGC+AGG | - | chr4_3:34555611-34555630 | None:intergenic | 50.0% | |
| !!! | GCACCGACTTCAAGCTCTTT+TGG | + | chr4_3:34555611-34555630 | Msa0638930:CDS | 50.0% |
| CAGCCTGTTATAGCGTCTGT+TGG | - | chr4_3:34556159-34556178 | None:intergenic | 50.0% | |
| TGCTGATCTCAGTTCCGTAG+TGG | - | chr4_3:34556541-34556560 | None:intergenic | 50.0% | |
| GCCGAGTGCAAAAAGAACTC+TGG | + | chr4_3:34556587-34556606 | Msa0638930:CDS | 50.0% | |
| GAACGTTACCTCCGGAGCTA+CGG | - | chr4_3:34554393-34554412 | None:intergenic | 55.0% | |
| !! | CTCTGAGGATTAGCTGGAGG+AGG | - | chr4_3:34555335-34555354 | None:intergenic | 55.0% |
| !! | CCACTCTGAGGATTAGCTGG+AGG | - | chr4_3:34555338-34555357 | None:intergenic | 55.0% |
| CCTCCAGCTAATCCTCAGAG+TGG | + | chr4_3:34555335-34555354 | Msa0638930:CDS | 55.0% | |
| ! | CCACCACTCTGAGGATTAGC+TGG | - | chr4_3:34555341-34555360 | None:intergenic | 55.0% |
| CCAGCTAATCCTCAGAGTGG+TGG | + | chr4_3:34555338-34555357 | Msa0638930:CDS | 55.0% | |
| GCTAATCCTCAGAGTGGTGG+CGG | + | chr4_3:34555341-34555360 | Msa0638930:CDS | 55.0% | |
| !!! | GCAGGTATGGCTTTTGGGAC+TGG | + | chr4_3:34555494-34555513 | Msa0638930:intron | 55.0% |
| ! | CTGGAAGTGCAATGGCACAC+AGG | + | chr4_3:34555513-34555532 | Msa0638930:CDS | 55.0% |
| AGGACCCACAACAGCATCCA+CGG | - | chr4_3:34555540-34555559 | None:intergenic | 55.0% | |
| ! | GATTAGCTGGAGGAGGAGCG+TGG | - | chr4_3:34555328-34555347 | None:intergenic | 60.0% |
| !! | AATCCTCAGAGTGGTGGCGG+CGG | + | chr4_3:34555344-34555363 | Msa0638930:CDS | 60.0% |
| ! | GGTGGCGGCGGTATTCTTAG+TGG | + | chr4_3:34555356-34555375 | Msa0638930:CDS | 60.0% |
| AGGGCCGTGGATGCTGTTGT+GGG | + | chr4_3:34555533-34555552 | Msa0638930:CDS | 60.0% | |
| CGGCGTGCCATGGTTGTCGA+AGG | - | chr4_3:34554373-34554392 | None:intergenic | 65.0% | |
| ACCATGGCACGCCGTAGCTC+CGG | + | chr4_3:34554379-34554398 | Msa0638930:exon | 65.0% | |
| ATACCGCCGCCACCACTCTG+AGG | - | chr4_3:34555350-34555369 | None:intergenic | 65.0% | |
| TGCAATGGCACACAGGGCCG+TGG | + | chr4_3:34555520-34555539 | Msa0638930:CDS | 65.0% | |
| CAGGGCCGTGGATGCTGTTG+TGG | + | chr4_3:34555532-34555551 | Msa0638930:CDS | 65.0% | |
| TCCGGAGCTACGGCGTGCCA+TGG | - | chr4_3:34554383-34554402 | None:intergenic | 70.0% | |
| ATGGCACGCCGTAGCTCCGG+AGG | + | chr4_3:34554382-34554401 | Msa0638930:CDS | 70.0% | |
| CGTGGTGCAGCACGTGGAGC+TGG | - | chr4_3:34555144-34555163 | None:intergenic | 70.0% | |
| GCAGGACGTGGTGCAGCACG+TGG | - | chr4_3:34555150-34555169 | None:intergenic | 70.0% | |
| GCTGCACCACGTCCTGCTCC+AGG | + | chr4_3:34555153-34555172 | Msa0638930:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 34554222 | 34557119 | 34554222 | ID=Msa0638930;Name=Msa0638930 |
| chr4_3 | mRNA | 34554222 | 34557119 | 34554222 | ID=Msa0638930-mRNA-1;Parent=Msa0638930;Name=Msa0638930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=160|0.6|0.83|0.83|1|1|6|491|172 |
| chr4_3 | exon | 34554222 | 34554403 | 34554222 | ID=Msa0638930-mRNA-1:exon:7950;Parent=Msa0638930-mRNA-1 |
| chr4_3 | exon | 34555127 | 34555174 | 34555127 | ID=Msa0638930-mRNA-1:exon:7951;Parent=Msa0638930-mRNA-1 |
| chr4_3 | exon | 34555321 | 34555401 | 34555321 | ID=Msa0638930-mRNA-1:exon:7952;Parent=Msa0638930-mRNA-1 |
| chr4_3 | exon | 34555498 | 34555673 | 34555498 | ID=Msa0638930-mRNA-1:exon:7953;Parent=Msa0638930-mRNA-1 |
| chr4_3 | exon | 34556034 | 34556126 | 34556034 | ID=Msa0638930-mRNA-1:exon:7954;Parent=Msa0638930-mRNA-1 |
| chr4_3 | exon | 34556530 | 34557119 | 34556530 | ID=Msa0638930-mRNA-1:exon:7955;Parent=Msa0638930-mRNA-1 |
| chr4_3 | five_prime_UTR | 34554222 | 34554381 | 34554222 | ID=Msa0638930-mRNA-1:five_prime_utr;Parent=Msa0638930-mRNA-1 |
| chr4_3 | CDS | 34554382 | 34554403 | 34554382 | ID=Msa0638930-mRNA-1:cds;Parent=Msa0638930-mRNA-1 |
| chr4_3 | CDS | 34555127 | 34555174 | 34555127 | ID=Msa0638930-mRNA-1:cds;Parent=Msa0638930-mRNA-1 |
| chr4_3 | CDS | 34555321 | 34555401 | 34555321 | ID=Msa0638930-mRNA-1:cds;Parent=Msa0638930-mRNA-1 |
| chr4_3 | CDS | 34555498 | 34555673 | 34555498 | ID=Msa0638930-mRNA-1:cds;Parent=Msa0638930-mRNA-1 |
| chr4_3 | CDS | 34556034 | 34556126 | 34556034 | ID=Msa0638930-mRNA-1:cds;Parent=Msa0638930-mRNA-1 |
| chr4_3 | CDS | 34556530 | 34556628 | 34556530 | ID=Msa0638930-mRNA-1:cds;Parent=Msa0638930-mRNA-1 |
| chr4_3 | three_prime_UTR | 34556629 | 34557119 | 34556629 | ID=Msa0638930-mRNA-1:three_prime_utr;Parent=Msa0638930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
