Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102260 | sp|Q0WSY2|FPP4_ARATH | 51.135 | 1101 | 396 | 20 | 1 | 1078 | 1 | 982 | 0.0 | 917 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102260 | A0A072VFI4 | 98.242 | 1081 | 19 | 0 | 1 | 1081 | 1 | 1081 | 0.0 | 2176 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102260 | Msa0353500 | 0.814726 | 1.330086e-51 | -8.615850e-47 |
| Msa0102260 | Msa0400420 | 0.810032 | 1.409863e-50 | -8.615850e-47 |
| Msa0102260 | Msa0619010 | 0.804656 | 1.945713e-49 | -8.615850e-47 |
| Msa0102260 | Msa0705570 | 0.800318 | 1.524527e-48 | -8.615850e-47 |
| Msa0102260 | Msa1268080 | 0.973297 | 3.435408e-136 | -8.615850e-47 |
| Msa0102260 | Msa1268100 | 0.965738 | 5.384947e-125 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102260 | MtrunA17_Chr1g0156371 | 98.242 | 1081 | 19 | 0 | 1 | 1081 | 1 | 1081 | 0.0 | 2176 |
| Msa0102260 | MtrunA17_Chr3g0142411 | 69.937 | 1111 | 289 | 9 | 1 | 1081 | 1 | 1096 | 0.0 | 1452 |
| Msa0102260 | MtrunA17_Chr5g0405291 | 49.412 | 510 | 222 | 7 | 1 | 503 | 1 | 481 | 1.26e-125 | 402 |
| Msa0102260 | MtrunA17_Chr5g0405291 | 34.591 | 318 | 168 | 9 | 798 | 1081 | 455 | 766 | 3.26e-35 | 144 |
| Msa0102260 | MtrunA17_Chr4g0053121 | 36.255 | 502 | 265 | 8 | 1 | 500 | 1 | 449 | 3.24e-65 | 240 |
| Msa0102260 | MtrunA17_Chr1g0159951 | 42.489 | 233 | 109 | 2 | 67 | 299 | 136 | 343 | 1.22e-41 | 165 |
| Msa0102260 | MtrunA17_Chr8g0384881 | 39.216 | 306 | 146 | 7 | 1 | 299 | 1 | 273 | 1.56e-40 | 159 |
| Msa0102260 | MtrunA17_Chr3g0130811 | 40.708 | 226 | 111 | 3 | 74 | 299 | 55 | 257 | 6.29e-34 | 140 |
| Msa0102260 | MtrunA17_Chr5g0401911 | 33.716 | 261 | 143 | 4 | 1 | 260 | 1 | 232 | 8.07e-29 | 124 |
| Msa0102260 | MtrunA17_Chr4g0044561 | 31.507 | 365 | 227 | 8 | 142 | 500 | 86 | 433 | 2.40e-28 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102260 | AT1G19835.6 | 51.135 | 1101 | 396 | 20 | 1 | 1078 | 1 | 982 | 0.0 | 917 |
| Msa0102260 | AT1G19835.5 | 51.135 | 1101 | 396 | 20 | 1 | 1078 | 1 | 982 | 0.0 | 917 |
| Msa0102260 | AT1G19835.3 | 51.135 | 1101 | 396 | 20 | 1 | 1078 | 1 | 982 | 0.0 | 917 |
| Msa0102260 | AT1G19835.1 | 51.135 | 1101 | 396 | 20 | 1 | 1078 | 1 | 982 | 0.0 | 917 |
| Msa0102260 | AT1G19835.4 | 51.135 | 1101 | 396 | 20 | 1 | 1078 | 1 | 982 | 0.0 | 917 |
| Msa0102260 | AT1G19835.2 | 51.135 | 1101 | 396 | 20 | 1 | 1078 | 1 | 982 | 0.0 | 917 |
| Msa0102260 | AT1G47900.2 | 48.819 | 1143 | 424 | 25 | 1 | 1076 | 1 | 1049 | 0.0 | 889 |
| Msa0102260 | AT1G47900.3 | 48.734 | 1145 | 424 | 26 | 1 | 1076 | 1 | 1051 | 0.0 | 885 |
| Msa0102260 | AT1G47900.1 | 48.734 | 1145 | 424 | 26 | 1 | 1076 | 1 | 1051 | 0.0 | 885 |
| Msa0102260 | AT4G36120.2 | 52.174 | 506 | 220 | 5 | 3 | 498 | 4 | 497 | 8.10e-152 | 478 |
| Msa0102260 | AT4G36120.1 | 52.174 | 506 | 220 | 5 | 3 | 498 | 4 | 497 | 8.10e-152 | 478 |
| Msa0102260 | AT2G23360.1 | 36.276 | 521 | 246 | 14 | 1 | 515 | 1 | 441 | 6.57e-66 | 240 |
| Msa0102260 | AT3G05270.3 | 38.206 | 301 | 139 | 8 | 1 | 299 | 1 | 256 | 3.66e-37 | 149 |
| Msa0102260 | AT3G05270.2 | 38.206 | 301 | 139 | 8 | 1 | 299 | 1 | 256 | 3.66e-37 | 149 |
| Msa0102260 | AT3G05270.1 | 38.206 | 301 | 139 | 8 | 1 | 299 | 1 | 256 | 3.66e-37 | 149 |
| Msa0102260 | AT1G77580.4 | 39.474 | 228 | 103 | 3 | 71 | 298 | 24 | 216 | 1.58e-33 | 139 |
| Msa0102260 | AT1G77580.2 | 39.474 | 228 | 103 | 3 | 71 | 298 | 58 | 250 | 1.67e-33 | 139 |
| Msa0102260 | AT1G77580.3 | 39.474 | 228 | 103 | 3 | 71 | 298 | 58 | 250 | 1.67e-33 | 139 |
| Msa0102260 | AT1G77580.1 | 39.474 | 228 | 103 | 3 | 71 | 298 | 24 | 216 | 2.05e-33 | 138 |
| Msa0102260 | AT1G21810.3 | 36.190 | 210 | 92 | 1 | 89 | 298 | 13 | 180 | 2.00e-27 | 119 |
| Msa0102260 | AT1G21810.1 | 36.190 | 210 | 92 | 1 | 89 | 298 | 13 | 180 | 2.00e-27 | 119 |
| Msa0102260 | AT2G24470.1 | 56.338 | 71 | 31 | 0 | 162 | 232 | 22 | 92 | 8.89e-17 | 77.0 |
| Msa0102260 | AT3G19370.3 | 42.991 | 107 | 61 | 0 | 196 | 302 | 156 | 262 | 1.66e-15 | 82.0 |
| Msa0102260 | AT3G19370.1 | 42.991 | 107 | 61 | 0 | 196 | 302 | 156 | 262 | 1.66e-15 | 82.0 |
| Msa0102260 | AT3G19370.2 | 42.991 | 107 | 61 | 0 | 196 | 302 | 156 | 262 | 1.66e-15 | 82.0 |
Find 242 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATAGGTAGTTTGGGTTTA+AGG | 0.086185 | 1_3:+9022117 | None:intergenic |
| TCAGTTCATGTTCTTCTTTC+AGG | 0.092243 | 1_3:+9020453 | None:intergenic |
| TCCACCTGATCCTGCAAATT+TGG | 0.097144 | 1_3:+9017572 | None:intergenic |
| TCTTGATCTGTCTCATTTCT+TGG | 0.164294 | 1_3:-9018767 | Msa0102260:CDS |
| ATAAAATATATTACCATTAA+AGG | 0.171660 | 1_3:-9016933 | Msa0102260:three_prime_UTR |
| AAGGATGATCCTGAAGATTT+TGG | 0.192360 | 1_3:-9019027 | Msa0102260:CDS |
| TTCATATGGATGGGAGATTT+TGG | 0.201783 | 1_3:+9019672 | None:intergenic |
| ATTTAATATCCTTGGTTATA+AGG | 0.215009 | 1_3:-9018725 | Msa0102260:CDS |
| GTCTTATTGTTTGAAGTAAA+TGG | 0.215951 | 1_3:+9019387 | None:intergenic |
| ATAAAAGAAATAATAATAAA+TGG | 0.216535 | 1_3:+9022095 | None:intergenic |
| TAATAACCGCACCCCTTTAA+TGG | 0.221743 | 1_3:+9016920 | None:intergenic |
| TGGGAGGATTGTGTAGTTAA+AGG | 0.221849 | 1_3:-9017193 | Msa0102260:three_prime_UTR |
| ACTTAGCAAACTTCAAATTT+TGG | 0.228892 | 1_3:-9019733 | Msa0102260:CDS |
| AATAAATGGGATAGGTAGTT+TGG | 0.232707 | 1_3:+9022109 | None:intergenic |
| AAGACCATAGTCATTGTTAA+AGG | 0.235685 | 1_3:+9016998 | None:intergenic |
| CAAGCAATTGGACAAGATTA+AGG | 0.237668 | 1_3:-9020402 | Msa0102260:CDS |
| CAGAAAACTCCTCCATCTTT+TGG | 0.257130 | 1_3:+9018839 | None:intergenic |
| TTGCTGCATAGCCTGTATTT+TGG | 0.257557 | 1_3:+9019631 | None:intergenic |
| ATTGCGAATTTCAAGCTCTT+TGG | 0.257885 | 1_3:+9020160 | None:intergenic |
| TTGAAGTTTGCTAAGTGTTT+TGG | 0.260849 | 1_3:+9019740 | None:intergenic |
| AATATGACTCTACAGAAATT+TGG | 0.262881 | 1_3:+9020872 | None:intergenic |
| TGATACTCCATGTGATAAAA+AGG | 0.263448 | 1_3:-9019046 | Msa0102260:CDS |
| GAAAGTCTTGGCCGAGATTA+TGG | 0.264945 | 1_3:-9019972 | Msa0102260:CDS |
| TTTGGCTGTATATGCTTTCA+TGG | 0.269714 | 1_3:+9019649 | None:intergenic |
| GTCAATGTTTACAAATATAA+AGG | 0.271113 | 1_3:+9017078 | None:intergenic |
| CTGCTTGCCAAGAAGATATA+TGG | 0.272289 | 1_3:+9017691 | None:intergenic |
| GGCTACACGGTAATGATATT+TGG | 0.284416 | 1_3:-9017264 | Msa0102260:three_prime_UTR |
| AGAATGTGATTGTGATATTA+AGG | 0.293253 | 1_3:+9022165 | None:intergenic |
| TACAAAACATATACCTGTTT+GGG | 0.302469 | 1_3:+9021434 | None:intergenic |
| GCTATCAATCCCACGGGGAC+TGG | 0.303633 | 1_3:+9019236 | None:intergenic |
| CTACAAAACATATACCTGTT+TGG | 0.304368 | 1_3:+9021433 | None:intergenic |
| TGAGAAAGTTGCTGCTGAAT+TGG | 0.315843 | 1_3:-9021480 | Msa0102260:CDS |
| GACTTTGTAGGCTTGTGATT+TGG | 0.317402 | 1_3:+9017422 | None:intergenic |
| CTAGAGGTGGAGAAATTTGC+TGG | 0.321649 | 1_3:-9019444 | Msa0102260:CDS |
| GATAGGTAGTTTGGGTTTAA+GGG | 0.328132 | 1_3:+9022118 | None:intergenic |
| CCACCTGATCCTGCAAATTT+GGG | 0.328853 | 1_3:+9017573 | None:intergenic |
| CTTTCCTTTAACAATGACTA+TGG | 0.328961 | 1_3:-9017002 | Msa0102260:three_prime_UTR |
| TTTAATATCCTTGGTTATAA+GGG | 0.333038 | 1_3:-9018724 | Msa0102260:CDS |
| GGCTCTGTCTAGGTCCTTGC+AGG | 0.333327 | 1_3:-9020315 | Msa0102260:CDS |
| TAAAATATATTACCATTAAA+GGG | 0.336309 | 1_3:-9016932 | Msa0102260:three_prime_UTR |
| TTTATTATAATAGTAGTAGA+AGG | 0.339584 | 1_3:-9022268 | Msa0102260:five_prime_UTR |
| ACTGTCAGTGTTTGAATCTA+TGG | 0.340845 | 1_3:-9019184 | Msa0102260:CDS |
| CTATCAATCCCACGGGGACT+GGG | 0.341097 | 1_3:+9019237 | None:intergenic |
| GACAGTCTCTGAAATATTAC+AGG | 0.341977 | 1_3:-9017058 | Msa0102260:three_prime_UTR |
| AGAAAAGAATGCTGACGAAT+TGG | 0.344363 | 1_3:-9019511 | Msa0102260:CDS |
| CAGGAAACCATATATCTTCT+TGG | 0.344485 | 1_3:-9017698 | Msa0102260:CDS |
| GATGAAGAGGCTGACTTTGT+AGG | 0.345777 | 1_3:+9017410 | None:intergenic |
| TAATGAAATTCAGACTAAAA+AGG | 0.347824 | 1_3:-9017854 | Msa0102260:intron |
| GAAACTGAACCAAAATCTTC+AGG | 0.348387 | 1_3:+9019018 | None:intergenic |
| CCTTCTGCTGATTACTTGTC+TGG | 0.348966 | 1_3:+9019700 | None:intergenic |
| GCATACACTCAGAAGGTTCT+TGG | 0.355846 | 1_3:+9018974 | None:intergenic |
| ACCTCGGAGCCCAAATTTGC+AGG | 0.363025 | 1_3:-9017582 | Msa0102260:CDS |
| GGAGGAGGTGGCAGTGGTAG+TGG | 0.363382 | 1_3:+9022186 | None:intergenic |
| GAGATGGACGGAGCTAGTTT+TGG | 0.363929 | 1_3:-9017551 | Msa0102260:CDS |
| GAACATGTTTAATATCCTTC+AGG | 0.376801 | 1_3:+9019136 | None:intergenic |
| CTCGGATATATCATCTTTGC+TGG | 0.377440 | 1_3:+9019326 | None:intergenic |
| ATCATTACCATCTTCAGAAA+TGG | 0.383278 | 1_3:+9019599 | None:intergenic |
| TGAGGACTAGAAGGTTTAAC+AGG | 0.386914 | 1_3:+9019927 | None:intergenic |
| TGGATGGTGTACAGGAGATA+TGG | 0.388288 | 1_3:+9017442 | None:intergenic |
| GATAAATACCAAGGAAGCTT+TGG | 0.391489 | 1_3:-9020740 | Msa0102260:CDS |
| AGCTGAAGTTAAATCACAAT+TGG | 0.392320 | 1_3:-9018383 | Msa0102260:CDS |
| CTTAATCTTGTCCAATTGCT+TGG | 0.394678 | 1_3:+9020403 | None:intergenic |
| GTTCTCCATGGAGGACTTTG+AGG | 0.394789 | 1_3:-9018506 | Msa0102260:CDS |
| GAAAAGAATGCTGACGAATT+GGG | 0.401808 | 1_3:-9019510 | Msa0102260:CDS |
| ATATGCTTTCATGGTTCATA+TGG | 0.402247 | 1_3:+9019658 | None:intergenic |
| ATATTCACGTCTGACGGGTT+TGG | 0.402685 | 1_3:-9020854 | Msa0102260:CDS |
| ACTGTAGCAAACTTGCTTCA+TGG | 0.403189 | 1_3:+9018794 | None:intergenic |
| GATCCCATTGGTTCTGTTTG+AGG | 0.404007 | 1_3:+9017653 | None:intergenic |
| ACAGAAATTTGGACATGGTT+CGG | 0.410753 | 1_3:+9020883 | None:intergenic |
| CACGACTTCGTGTTGTTCCT+TGG | 0.413839 | 1_3:-9018913 | Msa0102260:CDS |
| GAGATCTCATGAAGCAGCTT+TGG | 0.414919 | 1_3:-9018203 | Msa0102260:CDS |
| ATAAATGGGATAGGTAGTTT+GGG | 0.415676 | 1_3:+9022110 | None:intergenic |
| AAAACGTAACAGCGAATTGC+AGG | 0.418739 | 1_3:-9019781 | Msa0102260:CDS |
| TTCATTTGTGCAAGTGCAGC+AGG | 0.425188 | 1_3:+9020005 | None:intergenic |
| CTGATAATGCGGCTCTGTCT+AGG | 0.427732 | 1_3:-9020325 | Msa0102260:CDS |
| GAAACTGACTGCTGAGGATC+AGG | 0.428547 | 1_3:-9020525 | Msa0102260:CDS |
| TAAAAGAAATAATAATAAAT+GGG | 0.430471 | 1_3:+9022096 | None:intergenic |
| TTCTCTTTCACATGATTCTA+CGG | 0.433391 | 1_3:+9020217 | None:intergenic |
| TTTCTGTCTTCATTCGTAGA+TGG | 0.433666 | 1_3:+9018254 | None:intergenic |
| GATGTCAAATTTCCATCATC+AGG | 0.434545 | 1_3:+9018559 | None:intergenic |
| AATCCTGAGGTTCCTGATGA+TGG | 0.437920 | 1_3:-9018571 | Msa0102260:CDS |
| AGCTGCTAACAAGCAGCATA+TGG | 0.446965 | 1_3:-9020105 | Msa0102260:CDS |
| AAGGAAAAGAATACAACATA+TGG | 0.447308 | 1_3:+9017112 | None:intergenic |
| GAATTCAGATTTAATATCCT+TGG | 0.447868 | 1_3:-9018733 | Msa0102260:CDS |
| TGCATCTAATCAACCCAAAC+AGG | 0.451553 | 1_3:-9021447 | Msa0102260:intron |
| GAGAGGGTGCCATGAATGTC+TGG | 0.451979 | 1_3:-9017171 | Msa0102260:three_prime_UTR |
| AAGTGTTTGTAAAATGCAAA+GGG | 0.452367 | 1_3:+9017501 | None:intergenic |
| CGAGAAGTTGTGCCGAGTCT+TGG | 0.454331 | 1_3:-9019572 | Msa0102260:CDS |
| TCAATTTCGTTAAATCATGA+AGG | 0.454908 | 1_3:+9017221 | None:intergenic |
| AGCCAAGCGTCTCCTGCTGC+AGG | 0.455284 | 1_3:-9019270 | Msa0102260:CDS |
| CATACACTCAGAAGGTTCTT+GGG | 0.458195 | 1_3:+9018975 | None:intergenic |
| AGAACATGAACTGAAAATAC+AGG | 0.458759 | 1_3:-9020444 | Msa0102260:CDS |
| TCAATGTTTACAAATATAAA+GGG | 0.460293 | 1_3:+9017079 | None:intergenic |
| GCTTTCATGGTTCATATGGA+TGG | 0.462160 | 1_3:+9019662 | None:intergenic |
| CTTGTATCTAATGTTGTACA+TGG | 0.462364 | 1_3:-9017138 | Msa0102260:three_prime_UTR |
| GCAATCTTATCTATGCAATC+AGG | 0.462519 | 1_3:+9018679 | None:intergenic |
| TATCCTTGGTTATAAGGGTA+TGG | 0.463385 | 1_3:-9018719 | Msa0102260:CDS |
| AGCATATACAGCCAAAATAC+AGG | 0.468052 | 1_3:-9019642 | Msa0102260:CDS |
| AGTGAAGACATATGAAGAAA+AGG | 0.470909 | 1_3:-9020824 | Msa0102260:CDS |
| ATTGTGATTTGAGTGAGATA+TGG | 0.475292 | 1_3:-9021549 | Msa0102260:exon |
| TGAAAAGTTAGCCGAGTGTC+AGG | 0.477083 | 1_3:-9017717 | Msa0102260:CDS |
| AAAGGCAGAAGCAGAAGCTT+TGG | 0.478071 | 1_3:-9020582 | Msa0102260:CDS |
| AAATTCTCCAGGCTGGGAAA+AGG | 0.482919 | 1_3:-9020600 | Msa0102260:intron |
| TTTCCATCATCAGGAACCTC+AGG | 0.483685 | 1_3:+9018568 | None:intergenic |
| TATCAATCCCACGGGGACTG+GGG | 0.484881 | 1_3:+9019238 | None:intergenic |
| AAGCAATTGGACAAGATTAA+GGG | 0.485157 | 1_3:-9020401 | Msa0102260:CDS |
| AACTTCAGCTAGAAGTTGCT+CGG | 0.486763 | 1_3:+9018396 | None:intergenic |
| GAATTTCAGCTACAGAGTCT+TGG | 0.486988 | 1_3:+9019088 | None:intergenic |
| ACTTTGAACAGGAACTTCTC+AGG | 0.487308 | 1_3:-9020355 | Msa0102260:CDS |
| TATAATAGTAGTAGAAGGTA+AGG | 0.488217 | 1_3:-9022263 | Msa0102260:five_prime_UTR |
| GGGGCTGGTGATCCTGCAGC+AGG | 0.488978 | 1_3:+9019258 | None:intergenic |
| GCTGCTGAATTGGACTCTGC+TGG | 0.489054 | 1_3:-9021470 | Msa0102260:CDS |
| ATGATCTCCATTTCTGAAGA+TGG | 0.489920 | 1_3:-9019606 | Msa0102260:CDS |
| GAGCCCAAATTTGCAGGATC+AGG | 0.490198 | 1_3:-9017576 | Msa0102260:CDS |
| TTTAACGAAATTGAGCTTGT+GGG | 0.494026 | 1_3:-9017212 | Msa0102260:three_prime_UTR |
| ATATCATTACCAGACATTCA+TGG | 0.495064 | 1_3:+9017162 | None:intergenic |
| GGAGAGAAATGAGGACTAGA+AGG | 0.495341 | 1_3:+9019918 | None:intergenic |
| TCATGAAGGGGTTCGCAACC+TGG | 0.497052 | 1_3:+9017235 | None:intergenic |
| TTGTGATTTGGATGGTGTAC+AGG | 0.497419 | 1_3:+9017434 | None:intergenic |
| ATATTCTCGAGGGAGAAATC+AGG | 0.498205 | 1_3:+9019891 | None:intergenic |
| TCAGAAGCTGGCACATCGAC+GGG | 0.504799 | 1_3:+9019066 | None:intergenic |
| TTCTAGTCCTCATTTCTCTC+CGG | 0.504915 | 1_3:-9019916 | Msa0102260:CDS |
| GTAGCTGAAGAGGCTGTCTC+AGG | 0.506912 | 1_3:-9020700 | Msa0102260:intron |
| TATTAAGGAGGAGGTGGCAG+TGG | 0.507195 | 1_3:+9022180 | None:intergenic |
| TTAGTTCAAGAAAATTCGTC+GGG | 0.507234 | 1_3:-9018640 | Msa0102260:CDS |
| ATATGGATAGAAGATGGCCT+TGG | 0.509231 | 1_3:-9021532 | Msa0102260:CDS |
| ATCCTGCAGCAGGAGACGCT+TGG | 0.510537 | 1_3:+9019268 | None:intergenic |
| AAAGTGTTTGTAAAATGCAA+AGG | 0.511679 | 1_3:+9017500 | None:intergenic |
| TAGGATACGGAACTTTGAAC+AGG | 0.511809 | 1_3:-9020366 | Msa0102260:CDS |
| TTCACGTCTGACGGGTTTGG+AGG | 0.513254 | 1_3:-9020851 | Msa0102260:CDS |
| ATCACTTGAAACACGTGCAC+AGG | 0.515281 | 1_3:-9018296 | Msa0102260:CDS |
| CAGTGAAGATTCATGATATG+AGG | 0.516624 | 1_3:-9017285 | Msa0102260:three_prime_UTR |
| CACAATTGGCTTCTGCTCAA+AGG | 0.517000 | 1_3:-9018369 | Msa0102260:CDS |
| CCCAAATTTGCAGGATCAGG+TGG | 0.517045 | 1_3:-9017573 | Msa0102260:CDS |
| ATTCTTGATTGAAGATCTGC+TGG | 0.518048 | 1_3:+9019207 | None:intergenic |
| CTTTCATGGTTCATATGGAT+GGG | 0.519994 | 1_3:+9019663 | None:intergenic |
| AAGTTTGAGTCATTATCTGA+TGG | 0.520066 | 1_3:+9017470 | None:intergenic |
| TATAAAGGGAAACAATGAAA+AGG | 0.521693 | 1_3:+9017093 | None:intergenic |
| CAGCAAATTTCTCCACCTCT+AGG | 0.522984 | 1_3:+9019445 | None:intergenic |
| CTCATATCATGAATCTTCAC+TGG | 0.524069 | 1_3:+9017286 | None:intergenic |
| ATCAATCCCACGGGGACTGG+GGG | 0.524378 | 1_3:+9019239 | None:intergenic |
| AGAGAAAGAGAAGGCAATTG+TGG | 0.526170 | 1_3:-9018473 | Msa0102260:CDS |
| ATCGAGTTTCGCCATAATCT+CGG | 0.528105 | 1_3:+9019961 | None:intergenic |
| TTGTAGGCTTGTGATTTGGA+TGG | 0.529818 | 1_3:+9017426 | None:intergenic |
| AGGAACCTCAGGATTAGAGC+AGG | 0.530360 | 1_3:+9018579 | None:intergenic |
| AGCTTCTTCCACTCCTACAC+CGG | 0.531327 | 1_3:-9017387 | Msa0102260:CDS |
| AATGATATTTGGACAGCACC+AGG | 0.531907 | 1_3:-9017253 | Msa0102260:three_prime_UTR |
| TGCACTTGCACAAATGAAGC+TGG | 0.533816 | 1_3:-9020000 | Msa0102260:CDS |
| GAGTCATATTCACGTCTGAC+GGG | 0.534329 | 1_3:-9020859 | Msa0102260:CDS |
| TCGGGAGAGAGATATCAAAA+TGG | 0.535384 | 1_3:-9018622 | Msa0102260:CDS |
| AGATGGTATAAGCCAAAAGA+TGG | 0.536768 | 1_3:-9018851 | Msa0102260:CDS |
| ATCAGAAGCTGGCACATCGA+CGG | 0.537438 | 1_3:+9019065 | None:intergenic |
| ACTGACTTCAGATACATCAT+TGG | 0.542121 | 1_3:+9019350 | None:intergenic |
| GAAATAATAATAAATGGGAT+AGG | 0.542754 | 1_3:+9022101 | None:intergenic |
| AGTGGAAGAAGCTGATGAAG+AGG | 0.542780 | 1_3:+9017397 | None:intergenic |
| TTTGCAGGATCAGGTGGAGA+TGG | 0.543626 | 1_3:-9017567 | Msa0102260:CDS |
| GTTCATGATATATCTTCTGA+TGG | 0.544329 | 1_3:-9018874 | Msa0102260:CDS |
| AATTAGAGGCTGAGTGTCAA+AGG | 0.544913 | 1_3:-9020061 | Msa0102260:CDS |
| ATTTAACGAAATTGAGCTTG+TGG | 0.545126 | 1_3:-9017213 | Msa0102260:three_prime_UTR |
| CAATTTCGTTAAATCATGAA+GGG | 0.545399 | 1_3:+9017222 | None:intergenic |
| CAATTCCTCAAAGTCCTCCA+TGG | 0.546558 | 1_3:+9018501 | None:intergenic |
| AAAGGTTACGTGGTCTAGTA+CGG | 0.546735 | 1_3:-9020043 | Msa0102260:CDS |
| AAGAAAAGAACATGAGTATG+AGG | 0.546898 | 1_3:-9020136 | Msa0102260:CDS |
| GCATCCTCAAACAGAACCAA+TGG | 0.547812 | 1_3:-9017657 | Msa0102260:CDS |
| GGAATTTCTGTATATTCTCG+AGG | 0.548279 | 1_3:+9019880 | None:intergenic |
| CATGCATTTGAGTTGAGTCT+CGG | 0.550144 | 1_3:+9018333 | None:intergenic |
| TACAGAGCGCTTATTGACAA+TGG | 0.550529 | 1_3:-9019838 | Msa0102260:CDS |
| ATTGAGATTAGAGAAAGAGA+AGG | 0.551379 | 1_3:-9018482 | Msa0102260:CDS |
| ACATGCTAAAGTAGCTGAAG+AGG | 0.551814 | 1_3:-9020710 | Msa0102260:CDS |
| GTTAGTTCAAGAAAATTCGT+CGG | 0.552800 | 1_3:-9018641 | Msa0102260:CDS |
| CCAGACAAGTAATCAGCAGA+AGG | 0.556259 | 1_3:-9019700 | Msa0102260:CDS |
| CTGTCATTGCTTCTCTGCCA+AGG | 0.558008 | 1_3:+9018896 | None:intergenic |
| GTGATCTTGAGGCTAGGATA+CGG | 0.560014 | 1_3:-9020379 | Msa0102260:CDS |
| GGAGACGCTTGGCTTTGCAA+TGG | 0.560591 | 1_3:+9019279 | None:intergenic |
| AAAAGAATCTGCTAAAACCT+CGG | 0.562481 | 1_3:+9017354 | None:intergenic |
| AGCAGCTTTGGCAAAGTGCA+AGG | 0.562788 | 1_3:-9018191 | Msa0102260:CDS |
| AGTGAGATATGGATAGAAGA+TGG | 0.564925 | 1_3:-9021538 | Msa0102260:exon |
| TTGTGATATTAAGGAGGAGG+TGG | 0.568207 | 1_3:+9022174 | None:intergenic |
| GATATATCTTCTGATGGAGA+TGG | 0.568592 | 1_3:-9018868 | Msa0102260:CDS |
| TTCAGCTACAGAGTCTTGGA+TGG | 0.569854 | 1_3:+9019092 | None:intergenic |
| TGTGCAAGTGCAGCAGGACC+AGG | 0.570936 | 1_3:+9020011 | None:intergenic |
| TGCCGCAAAAGCTCAATGAC+CGG | 0.572380 | 1_3:+9017316 | None:intergenic |
| TCCTGCAAATTTGGGCTCCG+AGG | 0.575513 | 1_3:+9017581 | None:intergenic |
| AAGCTGGAAGTTGAAAGTCT+TGG | 0.575557 | 1_3:-9019984 | Msa0102260:CDS |
| GACTAAGAAGTTAGAACTGA+TGG | 0.576324 | 1_3:-9019475 | Msa0102260:CDS |
| CATCCTCAAACAGAACCAAT+GGG | 0.577158 | 1_3:-9017656 | Msa0102260:CDS |
| TCACATGGAGTATCAGAAGC+TGG | 0.577531 | 1_3:+9019054 | None:intergenic |
| CAAGATTAAGGGTGATCTTG+AGG | 0.577662 | 1_3:-9020390 | Msa0102260:CDS |
| TTGATCATAGGAGAGAGACT+TGG | 0.578161 | 1_3:-9017750 | Msa0102260:intron |
| ATATTACCATTAAAGGGGTG+CGG | 0.579062 | 1_3:-9016926 | Msa0102260:three_prime_UTR |
| ATGGCTAAGGATGCTGATGT+AGG | 0.582211 | 1_3:-9019165 | Msa0102260:CDS |
| AAATCTGTCATTTATGACCA+TGG | 0.582897 | 1_3:+9016962 | None:intergenic |
| GTTTGAAGTAAATGGCAAAG+AGG | 0.583585 | 1_3:+9019395 | None:intergenic |
| GGAGGTGGCAGTGGTAGTGG+TGG | 0.585882 | 1_3:+9022189 | None:intergenic |
| TGCTAACAAGCAGCATATGG+AGG | 0.587476 | 1_3:-9020102 | Msa0102260:CDS |
| GAATTTCTGTATATTCTCGA+GGG | 0.588350 | 1_3:+9019881 | None:intergenic |
| TGAAAAGCTATCAATCCCAC+GGG | 0.590101 | 1_3:+9019230 | None:intergenic |
| CACGTCACAAAAGTTCTCCA+TGG | 0.591616 | 1_3:-9018518 | Msa0102260:CDS |
| CAGGTCTGCTGCTGATAATG+CGG | 0.592535 | 1_3:-9020336 | Msa0102260:CDS |
| CAGGATCAGGTGGAGATGGA+CGG | 0.595264 | 1_3:-9017563 | Msa0102260:CDS |
| GTGAAAAGCTATCAATCCCA+CGG | 0.595662 | 1_3:+9019229 | None:intergenic |
| CATGTTAGAGCGCTCCTGCA+AGG | 0.598974 | 1_3:+9020301 | None:intergenic |
| TCACTGTACATAGATCCCAT+TGG | 0.599900 | 1_3:+9017641 | None:intergenic |
| TGATTGTGATATTAAGGAGG+AGG | 0.600565 | 1_3:+9022171 | None:intergenic |
| TCGAGGGAGAAATCAGGCAC+CGG | 0.602488 | 1_3:+9019897 | None:intergenic |
| CAATCCCTGCTCTAATCCTG+AGG | 0.602697 | 1_3:-9018584 | Msa0102260:CDS |
| AACGAAATTGAGCTTGTGGG+AGG | 0.602754 | 1_3:-9017209 | Msa0102260:three_prime_UTR |
| TTAAGGGTGATCTTGAGGCT+AGG | 0.602821 | 1_3:-9020385 | Msa0102260:CDS |
| AGCTAGAAGAACAATTGCAA+AGG | 0.604021 | 1_3:-9018168 | Msa0102260:intron |
| ATATATGGTTTCCTGACACT+CGG | 0.607908 | 1_3:+9017706 | None:intergenic |
| CGAGACTCAACTCAAATGCA+TGG | 0.608379 | 1_3:-9018332 | Msa0102260:CDS |
| TCAGGCACCGGAGAGAAATG+AGG | 0.609792 | 1_3:+9019909 | None:intergenic |
| AAAATATATTACCATTAAAG+GGG | 0.611457 | 1_3:-9016931 | Msa0102260:three_prime_UTR |
| AGAGTCATATTCACGTCTGA+CGG | 0.613924 | 1_3:-9020860 | Msa0102260:CDS |
| CAGACAAGTAATCAGCAGAA+GGG | 0.615118 | 1_3:-9019699 | Msa0102260:CDS |
| AGTGTTTGAATCTATGGCTA+AGG | 0.616003 | 1_3:-9019178 | Msa0102260:CDS |
| GGATTGTGTAGTTAAAGGAG+AGG | 0.616290 | 1_3:-9017188 | Msa0102260:three_prime_UTR |
| TGACGAATTGGGCAAATCTG+AGG | 0.616648 | 1_3:-9019499 | Msa0102260:CDS |
| GATCAGGCGTCACAGTTAGA+CGG | 0.617015 | 1_3:-9020509 | Msa0102260:CDS |
| AATTTCGTTAAATCATGAAG+GGG | 0.620082 | 1_3:+9017223 | None:intergenic |
| GTTATCTGCATACACTCAGA+AGG | 0.621671 | 1_3:+9018967 | None:intergenic |
| GCTAACAAGCAGCATATGGA+GGG | 0.621875 | 1_3:-9020101 | Msa0102260:CDS |
| TATTGCTGTCGACCAAGACT+CGG | 0.624331 | 1_3:+9019560 | None:intergenic |
| GATTGTGTAGTTAAAGGAGA+GGG | 0.634854 | 1_3:-9017187 | Msa0102260:three_prime_UTR |
| ATGTGATTGTGATATTAAGG+AGG | 0.635332 | 1_3:+9022168 | None:intergenic |
| GATGGATGACTTCCTAGAGG+TGG | 0.638572 | 1_3:-9019457 | Msa0102260:CDS |
| TTTCCATACCCTTATAACCA+AGG | 0.638601 | 1_3:+9018716 | None:intergenic |
| ATTCATGATATGAGGCTACA+CGG | 0.641736 | 1_3:-9017277 | Msa0102260:three_prime_UTR |
| TGGTATAAGCCAAAAGATGG+AGG | 0.642588 | 1_3:-9018848 | Msa0102260:CDS |
| GGAACCTCAGGATTAGAGCA+GGG | 0.651732 | 1_3:+9018580 | None:intergenic |
| AGAAAAGGTTCAGACACTTG+AGG | 0.656387 | 1_3:-9020809 | Msa0102260:CDS |
| GCTTCACAGAGCATCAACCT+CGG | 0.657044 | 1_3:-9017598 | Msa0102260:CDS |
| TGATGTAGGTAAGATCCTGA+AGG | 0.658649 | 1_3:-9019151 | Msa0102260:CDS |
| AAACACAGAGATAAATACCA+AGG | 0.669689 | 1_3:-9020749 | Msa0102260:CDS |
| TCTTTCGAAACTGACTGCTG+AGG | 0.670642 | 1_3:-9020531 | Msa0102260:CDS |
| ATTATGGCGAAACTCGATTG+CGG | 0.684534 | 1_3:-9019956 | Msa0102260:CDS |
| ACTCTACAGAAATTTGGACA+TGG | 0.687126 | 1_3:+9020878 | None:intergenic |
| ACTGATGGATGACTTCCTAG+AGG | 0.703699 | 1_3:-9019460 | Msa0102260:CDS |
| GCTGAGTGTCAAAGGTTACG+TGG | 0.710643 | 1_3:-9020053 | Msa0102260:CDS |
| AGTGTTTGTAAAATGCAAAG+GGG | 0.712425 | 1_3:+9017502 | None:intergenic |
| GTCACAAAAGTTCTCCATGG+AGG | 0.731979 | 1_3:-9018515 | Msa0102260:CDS |
| GAAAAGCTATCAATCCCACG+GGG | 0.825805 | 1_3:+9019231 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTAATTATTATTATTTGT+TGG | - | chr1_3:9017188-9017207 | Msa0102260:three_prime_UTR | 10.0% |
| !! | ATAAAATATATTACCATTAA+AGG | - | chr1_3:9022247-9022266 | Msa0102260:five_prime_UTR | 10.0% |
| !! | TAAAATATATTACCATTAAA+GGG | - | chr1_3:9022248-9022267 | Msa0102260:five_prime_UTR | 10.0% |
| !! | TTTATTATAATAGTAGTAGA+AGG | - | chr1_3:9016912-9016931 | Msa0102260:three_prime_UTR | 15.0% |
| !! | GTACAATTATAGTAATTTAA+GGG | - | chr1_3:9017325-9017344 | Msa0102260:exon | 15.0% |
| !! | TTTGGTTATTATAATCAAAT+GGG | + | chr1_3:9017352-9017371 | None:intergenic | 15.0% |
| !! | ATTTGGTTATTATAATCAAA+TGG | + | chr1_3:9017353-9017372 | None:intergenic | 15.0% |
| !!! | TTTGTTTTGACTTTTATATA+AGG | - | chr1_3:9017575-9017594 | Msa0102260:CDS | 15.0% |
| !!! | CTTGCTTTTTTTTTTTTATT+CGG | - | chr1_3:9018191-9018210 | Msa0102260:CDS | 15.0% |
| !! | TAAAAAAATTGCTAAATTAG+AGG | - | chr1_3:9019105-9019124 | Msa0102260:CDS | 15.0% |
| !!! | TAAGAAATTCATTATCTTTT+TGG | + | chr1_3:9019324-9019343 | None:intergenic | 15.0% |
| !! | TTCTTAGATTTCTATTTAAA+TGG | + | chr1_3:9021398-9021417 | None:intergenic | 15.0% |
| !! | TCAATGTTTACAAATATAAA+GGG | + | chr1_3:9022104-9022123 | None:intergenic | 15.0% |
| !! | AAAATATATTACCATTAAAG+GGG | - | chr1_3:9022249-9022268 | Msa0102260:five_prime_UTR | 15.0% |
| !! | GAAATAATAATAAATGGGAT+AGG | + | chr1_3:9017082-9017101 | None:intergenic | 20.0% |
| !! | GGTACAATTATAGTAATTTA+AGG | - | chr1_3:9017324-9017343 | Msa0102260:exon | 20.0% |
| !!! | GTGAATTTTTGAAACATAAA+AGG | - | chr1_3:9017546-9017565 | Msa0102260:CDS | 20.0% |
| !! | ATTTCATATAAGAAAATGAC+TGG | - | chr1_3:9017883-9017902 | Msa0102260:intron | 20.0% |
| !!! | AGATTCAAGTATTTTTCATT+TGG | - | chr1_3:9017911-9017930 | Msa0102260:intron | 20.0% |
| !! | AAAAAAAAAAGCAAGACAAA+TGG | + | chr1_3:9018186-9018205 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTATTCGGCAATA+TGG | - | chr1_3:9018199-9018218 | Msa0102260:CDS | 20.0% |
| !! | ATTTAATATCCTTGGTTATA+AGG | - | chr1_3:9020455-9020474 | Msa0102260:CDS | 20.0% |
| !! | TTTAATATCCTTGGTTATAA+GGG | - | chr1_3:9020456-9020475 | Msa0102260:CDS | 20.0% |
| !! | TAATGAAATTCAGACTAAAA+AGG | - | chr1_3:9021326-9021345 | Msa0102260:intron | 20.0% |
| !!! | TGAATTATTTTCTTGATCAT+AGG | - | chr1_3:9021418-9021437 | Msa0102260:intron | 20.0% |
| !! | GTCAATGTTTACAAATATAA+AGG | + | chr1_3:9022105-9022124 | None:intergenic | 20.0% |
| ! | TATAATAGTAGTAGAAGGTA+AGG | - | chr1_3:9016917-9016936 | Msa0102260:three_prime_UTR | 25.0% |
| !!! | GATTTTTGGGAATTAGAATT+AGG | + | chr1_3:9016963-9016982 | None:intergenic | 25.0% |
| ! | AGAATGTGATTGTGATATTA+AGG | + | chr1_3:9017018-9017037 | None:intergenic | 25.0% |
| !!! | ATTTGTTGGTTTTGTGTTTT+TGG | - | chr1_3:9017202-9017221 | Msa0102260:three_prime_UTR | 25.0% |
| ! | TTTCTCTTGTGTAATGTATA+TGG | - | chr1_3:9017516-9017535 | Msa0102260:CDS | 25.0% |
| !!! | GTGTTTTTTTTTGTTGTAGA+AGG | - | chr1_3:9017600-9017619 | Msa0102260:CDS | 25.0% |
| ! | TACAAAACATATACCTGTTT+GGG | + | chr1_3:9017749-9017768 | None:intergenic | 25.0% |
| ! | TGATACGTTGAATTTAATCA+CGG | + | chr1_3:9017811-9017830 | None:intergenic | 25.0% |
| ! | TTCATAGGGTATATGTTTAT+TGG | - | chr1_3:9017859-9017878 | Msa0102260:CDS | 25.0% |
| !! | TTCTGCTTAATTTTTATGCA+TGG | - | chr1_3:9017942-9017961 | Msa0102260:intron | 25.0% |
| ! | CAAAACTTGAAATGTTAACA+AGG | + | chr1_3:9017968-9017987 | None:intergenic | 25.0% |
| !!! | AAGTTTTGAAGAACAATTTC+TGG | - | chr1_3:9017980-9017999 | Msa0102260:intron | 25.0% |
| ! | TAATGTACTAATCATAAACC+CGG | + | chr1_3:9018068-9018087 | None:intergenic | 25.0% |
| ! | AATATGACTCTACAGAAATT+TGG | + | chr1_3:9018311-9018330 | None:intergenic | 25.0% |
| ! | ATTTGAACAGAACTTTAACT+CGG | + | chr1_3:9018564-9018583 | None:intergenic | 25.0% |
| !! | ACTTAGCAAACTTCAAATTT+TGG | - | chr1_3:9019447-9019466 | Msa0102260:CDS | 25.0% |
| !! | GTCTTATTGTTTGAAGTAAA+TGG | + | chr1_3:9019796-9019815 | None:intergenic | 25.0% |
| ! | GAATTCAGATTTAATATCCT+TGG | - | chr1_3:9020447-9020466 | Msa0102260:CDS | 25.0% |
| !!! | TCTTGAACTAACTTATTTTC+AGG | + | chr1_3:9020531-9020550 | None:intergenic | 25.0% |
| ! | ACTTACACATGATATGATAT+TGG | + | chr1_3:9021050-9021069 | None:intergenic | 25.0% |
| ! | CTAATAGACAAAGTAACAAA+AGG | + | chr1_3:9021285-9021304 | None:intergenic | 25.0% |
| !!! | CTTTTGTTACTTTGTCTATT+AGG | - | chr1_3:9021283-9021302 | Msa0102260:intron | 25.0% |
| ! | AAGTGTTTGTAAAATGCAAA+GGG | + | chr1_3:9021682-9021701 | None:intergenic | 25.0% |
| !! | AAAGTGTTTGTAAAATGCAA+AGG | + | chr1_3:9021683-9021702 | None:intergenic | 25.0% |
| !! | TTTTCATCAAAAGGAAAAAC+CGG | - | chr1_3:9021845-9021864 | Msa0102260:intron | 25.0% |
| ! | AATTTCGTTAAATCATGAAG+GGG | + | chr1_3:9021960-9021979 | None:intergenic | 25.0% |
| ! | CAATTTCGTTAAATCATGAA+GGG | + | chr1_3:9021961-9021980 | None:intergenic | 25.0% |
| ! | TCAATTTCGTTAAATCATGA+AGG | + | chr1_3:9021962-9021981 | None:intergenic | 25.0% |
| ! | AAGGAAAAGAATACAACATA+TGG | + | chr1_3:9022071-9022090 | None:intergenic | 25.0% |
| ! | TATAAAGGGAAACAATGAAA+AGG | + | chr1_3:9022090-9022109 | None:intergenic | 25.0% |
| !!! | TCTTTTAAAAGTTGTAACCA+TGG | - | chr1_3:9022201-9022220 | Msa0102260:five_prime_UTR | 25.0% |
| ATGTGATTGTGATATTAAGG+AGG | + | chr1_3:9017015-9017034 | None:intergenic | 30.0% | |
| ATAAATGGGATAGGTAGTTT+GGG | + | chr1_3:9017073-9017092 | None:intergenic | 30.0% | |
| AATAAATGGGATAGGTAGTT+TGG | + | chr1_3:9017074-9017093 | None:intergenic | 30.0% | |
| TTGGATGATGATATAAAGAG+AGG | - | chr1_3:9017221-9017240 | Msa0102260:three_prime_UTR | 30.0% | |
| TTAGATCTTGAAGATCACAT+TGG | - | chr1_3:9017259-9017278 | Msa0102260:three_prime_UTR | 30.0% | |
| AGAAATGATTACATGCACTA+AGG | + | chr1_3:9017465-9017484 | None:intergenic | 30.0% | |
| ATTGTGATTTGAGTGAGATA+TGG | - | chr1_3:9017631-9017650 | Msa0102260:CDS | 30.0% | |
| !!! | TCAGATGATTTTTTCTTCCA+AGG | + | chr1_3:9017668-9017687 | None:intergenic | 30.0% |
| CTACAAAACATATACCTGTT+TGG | + | chr1_3:9017750-9017769 | None:intergenic | 30.0% | |
| TTGACACTTCTAATAGTGTT+CGG | - | chr1_3:9017772-9017791 | Msa0102260:intron | 30.0% | |
| !! | AGTTTCTTACTTTTCTGCTA+TGG | - | chr1_3:9018028-9018047 | Msa0102260:intron | 30.0% |
| !!! | TATGGCCTTTTTTTTAATCC+CGG | - | chr1_3:9018046-9018065 | Msa0102260:intron | 30.0% |
| TAAACCCGGGATTAAAAAAA+AGG | + | chr1_3:9018054-9018073 | None:intergenic | 30.0% | |
| AATGTACTAATCATAAACCC+GGG | + | chr1_3:9018067-9018086 | None:intergenic | 30.0% | |
| ATTATGAAGCATACTAGATG+CGG | - | chr1_3:9018084-9018103 | Msa0102260:intron | 30.0% | |
| TTTAGATATGTGTTTGTGTG+TGG | - | chr1_3:9018113-9018132 | Msa0102260:intron | 30.0% | |
| TTAGATATGTGTTTGTGTGT+GGG | - | chr1_3:9018114-9018133 | Msa0102260:intron | 30.0% | |
| ! | AGACAAATGGAGTATTAGTT+AGG | + | chr1_3:9018173-9018192 | None:intergenic | 30.0% |
| AGTGAAGACATATGAAGAAA+AGG | - | chr1_3:9018356-9018375 | Msa0102260:CDS | 30.0% | |
| AAACACAGAGATAAATACCA+AGG | - | chr1_3:9018431-9018450 | Msa0102260:CDS | 30.0% | |
| AAAGGAAACACTATACATCA+AGG | + | chr1_3:9018533-9018552 | None:intergenic | 30.0% | |
| TTTAACTCGGGAAACAAAAA+AGG | + | chr1_3:9018551-9018570 | None:intergenic | 30.0% | |
| TTTGAACAGAACTTTAACTC+GGG | + | chr1_3:9018563-9018582 | None:intergenic | 30.0% | |
| AGAACATGAACTGAAAATAC+AGG | - | chr1_3:9018736-9018755 | Msa0102260:CDS | 30.0% | |
| AAGCAATTGGACAAGATTAA+GGG | - | chr1_3:9018779-9018798 | Msa0102260:CDS | 30.0% | |
| TTCTCTTTCACATGATTCTA+CGG | + | chr1_3:9018966-9018985 | None:intergenic | 30.0% | |
| AAGAAAAGAACATGAGTATG+AGG | - | chr1_3:9019044-9019063 | Msa0102260:CDS | 30.0% | |
| GAATTTCTGTATATTCTCGA+GGG | + | chr1_3:9019302-9019321 | None:intergenic | 30.0% | |
| !!! | TTGAAGTTTGCTAAGTGTTT+TGG | + | chr1_3:9019443-9019462 | None:intergenic | 30.0% |
| ATATGCTTTCATGGTTCATA+TGG | + | chr1_3:9019525-9019544 | None:intergenic | 30.0% | |
| ATCATTACCATCTTCAGAAA+TGG | + | chr1_3:9019584-9019603 | None:intergenic | 30.0% | |
| !! | ATTCTTTTCTTTTGGGAGTT+GGG | + | chr1_3:9019659-9019678 | None:intergenic | 30.0% |
| ! | TTCAAATCACTCTTCTTTTC+AGG | + | chr1_3:9019880-9019899 | None:intergenic | 30.0% |
| GAACATGTTTAATATCCTTC+AGG | + | chr1_3:9020047-9020066 | None:intergenic | 30.0% | |
| TGATACTCCATGTGATAAAA+AGG | - | chr1_3:9020134-9020153 | Msa0102260:CDS | 30.0% | |
| GTTCATGATATATCTTCTGA+TGG | - | chr1_3:9020306-9020325 | Msa0102260:CDS | 30.0% | |
| !! | AACTAACTTATTTTCAGGCA+GGG | + | chr1_3:9020526-9020545 | None:intergenic | 30.0% |
| GTTAGTTCAAGAAAATTCGT+CGG | - | chr1_3:9020539-9020558 | Msa0102260:CDS | 30.0% | |
| TTAGTTCAAGAAAATTCGTC+GGG | - | chr1_3:9020540-9020559 | Msa0102260:CDS | 30.0% | |
| ATTGAGATTAGAGAAAGAGA+AGG | - | chr1_3:9020698-9020717 | Msa0102260:intron | 30.0% | |
| AGCTGAAGTTAAATCACAAT+TGG | - | chr1_3:9020797-9020816 | Msa0102260:CDS | 30.0% | |
| CATAGTAAGTTAATGTTAGC+AGG | + | chr1_3:9021196-9021215 | None:intergenic | 30.0% | |
| GGAGGAATTAGAAATAGAAT+TGG | + | chr1_3:9021264-9021283 | None:intergenic | 30.0% | |
| ATAGACAAAGTAACAAAAGG+AGG | + | chr1_3:9021282-9021301 | None:intergenic | 30.0% | |
| GCTTTCTATTTGAATGGAAT+CGG | + | chr1_3:9021359-9021378 | None:intergenic | 30.0% | |
| !!! | CTAGTTTTGGTTTTATGCAA+AGG | - | chr1_3:9021642-9021661 | Msa0102260:intron | 30.0% |
| AGTGTTTGTAAAATGCAAAG+GGG | + | chr1_3:9021681-9021700 | None:intergenic | 30.0% | |
| AAGTTTGAGTCATTATCTGA+TGG | + | chr1_3:9021713-9021732 | None:intergenic | 30.0% | |
| AAAAGAATCTGCTAAAACCT+CGG | + | chr1_3:9021829-9021848 | None:intergenic | 30.0% | |
| ! | AGCAGATTCTTTTCATCAAA+AGG | - | chr1_3:9021836-9021855 | Msa0102260:intron | 30.0% |
| ATTTAACGAAATTGAGCTTG+TGG | - | chr1_3:9021967-9021986 | Msa0102260:intron | 30.0% | |
| TTTAACGAAATTGAGCTTGT+GGG | - | chr1_3:9021968-9021987 | Msa0102260:intron | 30.0% | |
| ATATCATTACCAGACATTCA+TGG | + | chr1_3:9022021-9022040 | None:intergenic | 30.0% | |
| CTTGTATCTAATGTTGTACA+TGG | - | chr1_3:9022042-9022061 | Msa0102260:intron | 30.0% | |
| CTTTCCTTTAACAATGACTA+TGG | - | chr1_3:9022178-9022197 | Msa0102260:five_prime_UTR | 30.0% | |
| AAGACCATAGTCATTGTTAA+AGG | + | chr1_3:9022185-9022204 | None:intergenic | 30.0% | |
| ! | AAATCTGTCATTTATGACCA+TGG | + | chr1_3:9022221-9022240 | None:intergenic | 30.0% |
| ! | GGTGGCTAAGAAAGATTTTT+GGG | + | chr1_3:9016976-9016995 | None:intergenic | 35.0% |
| ! | TGGTGGCTAAGAAAGATTTT+TGG | + | chr1_3:9016977-9016996 | None:intergenic | 35.0% |
| TGATTGTGATATTAAGGAGG+AGG | + | chr1_3:9017012-9017031 | None:intergenic | 35.0% | |
| ! | GATAGGTAGTTTGGGTTTAA+GGG | + | chr1_3:9017065-9017084 | None:intergenic | 35.0% |
| AAACAGAGAAGGGTAGAATT+TGG | + | chr1_3:9017370-9017389 | None:intergenic | 35.0% | |
| GAAATGCAACAAACAGAGAA+GGG | + | chr1_3:9017380-9017399 | None:intergenic | 35.0% | |
| TGAAATGCAACAAACAGAGA+AGG | + | chr1_3:9017381-9017400 | None:intergenic | 35.0% | |
| AGTGAGATATGGATAGAAGA+TGG | - | chr1_3:9017642-9017661 | Msa0102260:CDS | 35.0% | |
| !!! | ATGGCCTTTTTTTTAATCCC+GGG | - | chr1_3:9018047-9018066 | Msa0102260:intron | 35.0% |
| TTATGAAGCATACTAGATGC+GGG | - | chr1_3:9018085-9018104 | Msa0102260:intron | 35.0% | |
| GGGATTTGAACTTGCATAAT+TGG | - | chr1_3:9018134-9018153 | Msa0102260:intron | 35.0% | |
| ACAGAAATTTGGACATGGTT+CGG | + | chr1_3:9018300-9018319 | None:intergenic | 35.0% | |
| ACTCTACAGAAATTTGGACA+TGG | + | chr1_3:9018305-9018324 | None:intergenic | 35.0% | |
| GATAAATACCAAGGAAGCTT+TGG | - | chr1_3:9018440-9018459 | Msa0102260:CDS | 35.0% | |
| !! | TTGTTTTACCAAAGCTTCCT+TGG | + | chr1_3:9018451-9018470 | None:intergenic | 35.0% |
| AAGTTCTGTTCAAATTCTCC+AGG | - | chr1_3:9018569-9018588 | Msa0102260:CDS | 35.0% | |
| TCAGTTCATGTTCTTCTTTC+AGG | + | chr1_3:9018730-9018749 | None:intergenic | 35.0% | |
| !! | CAATTGCTTGGTTTTTGCAA+GGG | + | chr1_3:9018768-9018787 | None:intergenic | 35.0% |
| CTTAATCTTGTCCAATTGCT+TGG | + | chr1_3:9018780-9018799 | None:intergenic | 35.0% | |
| CAAGCAATTGGACAAGATTA+AGG | - | chr1_3:9018778-9018797 | Msa0102260:CDS | 35.0% | |
| ATTGCGAATTTCAAGCTCTT+TGG | + | chr1_3:9019023-9019042 | None:intergenic | 35.0% | |
| GGAATTTCTGTATATTCTCG+AGG | + | chr1_3:9019303-9019322 | None:intergenic | 35.0% | |
| !! | CTTCAAATTTTGGAAGCACA+AGG | - | chr1_3:9019457-9019476 | Msa0102260:CDS | 35.0% |
| ! | TTCATATGGATGGGAGATTT+TGG | + | chr1_3:9019511-9019530 | None:intergenic | 35.0% |
| CTTTCATGGTTCATATGGAT+GGG | + | chr1_3:9019520-9019539 | None:intergenic | 35.0% | |
| TTTGGCTGTATATGCTTTCA+TGG | + | chr1_3:9019534-9019553 | None:intergenic | 35.0% | |
| AGCATATACAGCCAAAATAC+AGG | - | chr1_3:9019538-9019557 | Msa0102260:CDS | 35.0% | |
| ! | ATGATCTCCATTTCTGAAGA+TGG | - | chr1_3:9019574-9019593 | Msa0102260:CDS | 35.0% |
| !! | CATTCTTTTCTTTTGGGAGT+TGG | + | chr1_3:9019660-9019679 | None:intergenic | 35.0% |
| ! | CGTCAGCATTCTTTTCTTTT+GGG | + | chr1_3:9019666-9019685 | None:intergenic | 35.0% |
| ! | TCGTCAGCATTCTTTTCTTT+TGG | + | chr1_3:9019667-9019686 | None:intergenic | 35.0% |
| AGAAAAGAATGCTGACGAAT+TGG | - | chr1_3:9019669-9019688 | Msa0102260:CDS | 35.0% | |
| GAAAAGAATGCTGACGAATT+GGG | - | chr1_3:9019670-9019689 | Msa0102260:CDS | 35.0% | |
| GACTAAGAAGTTAGAACTGA+TGG | - | chr1_3:9019705-9019724 | Msa0102260:CDS | 35.0% | |
| ! | GTTTGAAGTAAATGGCAAAG+AGG | + | chr1_3:9019788-9019807 | None:intergenic | 35.0% |
| ! | ACTGACTTCAGATACATCAT+TGG | + | chr1_3:9019833-9019852 | None:intergenic | 35.0% |
| ATTCTTGATTGAAGATCTGC+TGG | + | chr1_3:9019976-9019995 | None:intergenic | 35.0% | |
| ACTGTCAGTGTTTGAATCTA+TGG | - | chr1_3:9019996-9020015 | Msa0102260:CDS | 35.0% | |
| AGTGTTTGAATCTATGGCTA+AGG | - | chr1_3:9020002-9020021 | Msa0102260:CDS | 35.0% | |
| ! | GGATCATCCTTTTTATCACA+TGG | + | chr1_3:9020144-9020163 | None:intergenic | 35.0% |
| ! | AAGGATGATCCTGAAGATTT+TGG | - | chr1_3:9020153-9020172 | Msa0102260:CDS | 35.0% |
| GAAACTGAACCAAAATCTTC+AGG | + | chr1_3:9020165-9020184 | None:intergenic | 35.0% | |
| GATATATCTTCTGATGGAGA+TGG | - | chr1_3:9020312-9020331 | Msa0102260:CDS | 35.0% | |
| AGATGGTATAAGCCAAAAGA+TGG | - | chr1_3:9020329-9020348 | Msa0102260:CDS | 35.0% | |
| TCTTGATCTGTCTCATTTCT+TGG | - | chr1_3:9020413-9020432 | Msa0102260:CDS | 35.0% | |
| TATCCTTGGTTATAAGGGTA+TGG | - | chr1_3:9020461-9020480 | Msa0102260:CDS | 35.0% | |
| TTTCCATACCCTTATAACCA+AGG | + | chr1_3:9020467-9020486 | None:intergenic | 35.0% | |
| GCAATCTTATCTATGCAATC+AGG | + | chr1_3:9020504-9020523 | None:intergenic | 35.0% | |
| !! | GAACTAACTTATTTTCAGGC+AGG | + | chr1_3:9020527-9020546 | None:intergenic | 35.0% |
| GATGTCAAATTTCCATCATC+AGG | + | chr1_3:9020624-9020643 | None:intergenic | 35.0% | |
| TTTCTGTCTTCATTCGTAGA+TGG | + | chr1_3:9020929-9020948 | None:intergenic | 35.0% | |
| AGCTAGAAGAACAATTGCAA+AGG | - | chr1_3:9021012-9021031 | Msa0102260:intron | 35.0% | |
| TAAATTCCACTGTTGTGAAC+AGG | + | chr1_3:9021116-9021135 | None:intergenic | 35.0% | |
| CACAACAGTGGAATTTATGT+TGG | - | chr1_3:9021119-9021138 | Msa0102260:intron | 35.0% | |
| TGGTTTGAGTAAGAAAACGT+AGG | - | chr1_3:9021139-9021158 | Msa0102260:intron | 35.0% | |
| TTCTATTTGAATGGAATCGG+TGG | + | chr1_3:9021356-9021375 | None:intergenic | 35.0% | |
| TTCCATTCAAATAGAAAGCC+AGG | - | chr1_3:9021360-9021379 | Msa0102260:intron | 35.0% | |
| AAATGGAATTAAATCCAGCC+TGG | + | chr1_3:9021381-9021400 | None:intergenic | 35.0% | |
| ATATATGGTTTCCTGACACT+CGG | + | chr1_3:9021477-9021496 | None:intergenic | 35.0% | |
| CAGGAAACCATATATCTTCT+TGG | - | chr1_3:9021482-9021501 | Msa0102260:CDS | 35.0% | |
| !!! | TTTTGGTTTTATGCAAAGGC+AGG | - | chr1_3:9021646-9021665 | Msa0102260:intron | 35.0% |
| !!! | TTTGGTTTTATGCAAAGGCA+GGG | - | chr1_3:9021647-9021666 | Msa0102260:intron | 35.0% |
| CTCATATCATGAATCTTCAC+TGG | + | chr1_3:9021897-9021916 | None:intergenic | 35.0% | |
| CAGTGAAGATTCATGATATG+AGG | - | chr1_3:9021895-9021914 | Msa0102260:intron | 35.0% | |
| ATTCATGATATGAGGCTACA+CGG | - | chr1_3:9021903-9021922 | Msa0102260:intron | 35.0% | |
| GATTGTGTAGTTAAAGGAGA+GGG | - | chr1_3:9021993-9022012 | Msa0102260:intron | 35.0% | |
| !! | GACAGTCTCTGAAATATTAC+AGG | - | chr1_3:9022122-9022141 | Msa0102260:five_prime_UTR | 35.0% |
| ATATTACCATTAAAGGGGTG+CGG | - | chr1_3:9022254-9022273 | Msa0102260:five_prime_UTR | 35.0% | |
| TTGTGATATTAAGGAGGAGG+TGG | + | chr1_3:9017009-9017028 | None:intergenic | 40.0% | |
| ! | GGATAGGTAGTTTGGGTTTA+AGG | + | chr1_3:9017066-9017085 | None:intergenic | 40.0% |
| TGCACTAAGGTGAATAGTGT+CGG | + | chr1_3:9017452-9017471 | None:intergenic | 40.0% | |
| ATATGGATAGAAGATGGCCT+TGG | - | chr1_3:9017648-9017667 | Msa0102260:CDS | 40.0% | |
| TGAGAAAGTTGCTGCTGAAT+TGG | - | chr1_3:9017700-9017719 | Msa0102260:CDS | 40.0% | |
| TGCATCTAATCAACCCAAAC+AGG | - | chr1_3:9017733-9017752 | Msa0102260:CDS | 40.0% | |
| CAACGTATCAGTGTTATGTC+CGG | - | chr1_3:9017821-9017840 | Msa0102260:intron | 40.0% | |
| TGTCTGTGTCAATGCTTCAT+AGG | - | chr1_3:9017844-9017863 | Msa0102260:intron | 40.0% | |
| GTCTGTGTCAATGCTTCATA+GGG | - | chr1_3:9017845-9017864 | Msa0102260:intron | 40.0% | |
| !! | TTGCTTTTGCTTATGCAAGC+AGG | - | chr1_3:9018260-9018279 | Msa0102260:CDS | 40.0% |
| AGAGTCATATTCACGTCTGA+CGG | - | chr1_3:9018320-9018339 | Msa0102260:CDS | 40.0% | |
| AGAAAAGGTTCAGACACTTG+AGG | - | chr1_3:9018371-9018390 | Msa0102260:CDS | 40.0% | |
| ACATGCTAAAGTAGCTGAAG+AGG | - | chr1_3:9018470-9018489 | Msa0102260:CDS | 40.0% | |
| !! | CCAATTGCTTGGTTTTTGCA+AGG | + | chr1_3:9018769-9018788 | None:intergenic | 40.0% |
| CCTTGCAAAAACCAAGCAAT+TGG | - | chr1_3:9018766-9018785 | Msa0102260:CDS | 40.0% | |
| CAAGATTAAGGGTGATCTTG+AGG | - | chr1_3:9018790-9018809 | Msa0102260:CDS | 40.0% | |
| TAGGATACGGAACTTTGAAC+AGG | - | chr1_3:9018814-9018833 | Msa0102260:CDS | 40.0% | |
| ACTTTGAACAGGAACTTCTC+AGG | - | chr1_3:9018825-9018844 | Msa0102260:CDS | 40.0% | |
| TGAAGAAAAAGCTCATGCTG+AGG | - | chr1_3:9018916-9018935 | Msa0102260:CDS | 40.0% | |
| AATTAGAGGCTGAGTGTCAA+AGG | - | chr1_3:9019119-9019138 | Msa0102260:CDS | 40.0% | |
| AAAGGTTACGTGGTCTAGTA+CGG | - | chr1_3:9019137-9019156 | Msa0102260:CDS | 40.0% | |
| CTAGTACGGAAAAAGTTACC+TGG | - | chr1_3:9019151-9019170 | Msa0102260:CDS | 40.0% | |
| AAGCTGGAAGTTGAAAGTCT+TGG | - | chr1_3:9019196-9019215 | Msa0102260:CDS | 40.0% | |
| ATCGAGTTTCGCCATAATCT+CGG | + | chr1_3:9019222-9019241 | None:intergenic | 40.0% | |
| ATTATGGCGAAACTCGATTG+CGG | - | chr1_3:9019224-9019243 | Msa0102260:CDS | 40.0% | |
| TGAGGACTAGAAGGTTTAAC+AGG | + | chr1_3:9019256-9019275 | None:intergenic | 40.0% | |
| TTCTAGTCCTCATTTCTCTC+CGG | - | chr1_3:9019264-9019283 | Msa0102260:CDS | 40.0% | |
| ATATTCTCGAGGGAGAAATC+AGG | + | chr1_3:9019292-9019311 | None:intergenic | 40.0% | |
| ! | TACAGAGCGCTTATTGACAA+TGG | - | chr1_3:9019342-9019361 | Msa0102260:CDS | 40.0% |
| AAAACGTAACAGCGAATTGC+AGG | - | chr1_3:9019399-9019418 | Msa0102260:CDS | 40.0% | |
| CAGACAAGTAATCAGCAGAA+GGG | - | chr1_3:9019481-9019500 | Msa0102260:CDS | 40.0% | |
| GCTTTCATGGTTCATATGGA+TGG | + | chr1_3:9019521-9019540 | None:intergenic | 40.0% | |
| ! | TTGCTGCATAGCCTGTATTT+TGG | + | chr1_3:9019552-9019571 | None:intergenic | 40.0% |
| CTCGGATATATCATCTTTGC+TGG | + | chr1_3:9019857-9019876 | None:intergenic | 40.0% | |
| !! | ATCACTCTTCTTTTCAGGCT+CGG | + | chr1_3:9019875-9019894 | None:intergenic | 40.0% |
| TGAAAAGCTATCAATCCCAC+GGG | + | chr1_3:9019953-9019972 | None:intergenic | 40.0% | |
| GTGAAAAGCTATCAATCCCA+CGG | + | chr1_3:9019954-9019973 | None:intergenic | 40.0% | |
| TGATGTAGGTAAGATCCTGA+AGG | - | chr1_3:9020029-9020048 | Msa0102260:CDS | 40.0% | |
| GAATTTCAGCTACAGAGTCT+TGG | + | chr1_3:9020095-9020114 | None:intergenic | 40.0% | |
| CATACACTCAGAAGGTTCTT+GGG | + | chr1_3:9020208-9020227 | None:intergenic | 40.0% | |
| GTTATCTGCATACACTCAGA+AGG | + | chr1_3:9020216-9020235 | None:intergenic | 40.0% | |
| TGGTATAAGCCAAAAGATGG+AGG | - | chr1_3:9020332-9020351 | Msa0102260:CDS | 40.0% | |
| ! | CAGAAAACTCCTCCATCTTT+TGG | + | chr1_3:9020344-9020363 | None:intergenic | 40.0% |
| ! | ACTGTAGCAAACTTGCTTCA+TGG | + | chr1_3:9020389-9020408 | None:intergenic | 40.0% |
| TCGGGAGAGAGATATCAAAA+TGG | - | chr1_3:9020558-9020577 | Msa0102260:CDS | 40.0% | |
| AGAGAAAGAGAAGGCAATTG+TGG | - | chr1_3:9020707-9020726 | Msa0102260:CDS | 40.0% | |
| AACTTCAGCTAGAAGTTGCT+CGG | + | chr1_3:9020787-9020806 | None:intergenic | 40.0% | |
| !! | CATGCATTTGAGTTGAGTCT+CGG | + | chr1_3:9020850-9020869 | None:intergenic | 40.0% |
| ! | AGCCTGGCTTTCTATTTGAA+TGG | + | chr1_3:9021365-9021384 | None:intergenic | 40.0% |
| ATTCAAATAGAAAGCCAGGC+TGG | - | chr1_3:9021364-9021383 | Msa0102260:intron | 40.0% | |
| TTGATCATAGGAGAGAGACT+TGG | - | chr1_3:9021430-9021449 | Msa0102260:intron | 40.0% | |
| CTGCTTGCCAAGAAGATATA+TGG | + | chr1_3:9021492-9021511 | None:intergenic | 40.0% | |
| CATCCTCAAACAGAACCAAT+GGG | - | chr1_3:9021524-9021543 | Msa0102260:CDS | 40.0% | |
| TCACTGTACATAGATCCCAT+TGG | + | chr1_3:9021542-9021561 | None:intergenic | 40.0% | |
| ! | GTACAGTGAGAAGCTTTTGA+AGG | - | chr1_3:9021553-9021572 | Msa0102260:five_prime_UTR | 40.0% |
| !! | GAGAAGCTTTTGAAGGTTGA+AGG | - | chr1_3:9021560-9021579 | Msa0102260:five_prime_UTR | 40.0% |
| ! | TTGTGATTTGGATGGTGTAC+AGG | + | chr1_3:9021749-9021768 | None:intergenic | 40.0% |
| ! | TTGTAGGCTTGTGATTTGGA+TGG | + | chr1_3:9021757-9021776 | None:intergenic | 40.0% |
| GACTTTGTAGGCTTGTGATT+TGG | + | chr1_3:9021761-9021780 | None:intergenic | 40.0% | |
| GGCTACACGGTAATGATATT+TGG | - | chr1_3:9021916-9021935 | Msa0102260:intron | 40.0% | |
| AATGATATTTGGACAGCACC+AGG | - | chr1_3:9021927-9021946 | Msa0102260:intron | 40.0% | |
| TGGGAGGATTGTGTAGTTAA+AGG | - | chr1_3:9021987-9022006 | Msa0102260:intron | 40.0% | |
| GGATTGTGTAGTTAAAGGAG+AGG | - | chr1_3:9021992-9022011 | Msa0102260:intron | 40.0% | |
| TAATAACCGCACCCCTTTAA+TGG | + | chr1_3:9022263-9022282 | None:intergenic | 40.0% | |
| GTCTCACACTTTGAACGCAT+TGG | - | chr1_3:9017303-9017322 | Msa0102260:three_prime_UTR | 45.0% | |
| ! | ACTAAGGTGAATAGTGTCGG+CGG | + | chr1_3:9017449-9017468 | None:intergenic | 45.0% |
| !! | TGAAGCATTGACACAGACAC+CGG | + | chr1_3:9017843-9017862 | None:intergenic | 45.0% |
| GAGTCATATTCACGTCTGAC+GGG | - | chr1_3:9018321-9018340 | Msa0102260:CDS | 45.0% | |
| !! | ATATTCACGTCTGACGGGTT+TGG | - | chr1_3:9018326-9018345 | Msa0102260:CDS | 45.0% |
| TCTGTTCAAATTCTCCAGGC+TGG | - | chr1_3:9018573-9018592 | Msa0102260:CDS | 45.0% | |
| CTGTTCAAATTCTCCAGGCT+GGG | - | chr1_3:9018574-9018593 | Msa0102260:CDS | 45.0% | |
| AAATTCTCCAGGCTGGGAAA+AGG | - | chr1_3:9018580-9018599 | Msa0102260:CDS | 45.0% | |
| AAAGGCAGAAGCAGAAGCTT+TGG | - | chr1_3:9018598-9018617 | Msa0102260:CDS | 45.0% | |
| TCTTTCGAAACTGACTGCTG+AGG | - | chr1_3:9018649-9018668 | Msa0102260:CDS | 45.0% | |
| TTAAGGGTGATCTTGAGGCT+AGG | - | chr1_3:9018795-9018814 | Msa0102260:CDS | 45.0% | |
| GTGATCTTGAGGCTAGGATA+CGG | - | chr1_3:9018801-9018820 | Msa0102260:CDS | 45.0% | |
| AGCTGCTAACAAGCAGCATA+TGG | - | chr1_3:9019075-9019094 | Msa0102260:CDS | 45.0% | |
| TGCTAACAAGCAGCATATGG+AGG | - | chr1_3:9019078-9019097 | Msa0102260:CDS | 45.0% | |
| GCTAACAAGCAGCATATGGA+GGG | - | chr1_3:9019079-9019098 | Msa0102260:CDS | 45.0% | |
| TTCATTTGTGCAAGTGCAGC+AGG | + | chr1_3:9019178-9019197 | None:intergenic | 45.0% | |
| TGCACTTGCACAAATGAAGC+TGG | - | chr1_3:9019180-9019199 | Msa0102260:CDS | 45.0% | |
| GAAAGTCTTGGCCGAGATTA+TGG | - | chr1_3:9019208-9019227 | Msa0102260:CDS | 45.0% | |
| GGAGAGAAATGAGGACTAGA+AGG | + | chr1_3:9019265-9019284 | None:intergenic | 45.0% | |
| ! | CCTTCTGCTGATTACTTGTC+TGG | + | chr1_3:9019483-9019502 | None:intergenic | 45.0% |
| CCAGACAAGTAATCAGCAGA+AGG | - | chr1_3:9019480-9019499 | Msa0102260:CDS | 45.0% | |
| TATTGCTGTCGACCAAGACT+CGG | + | chr1_3:9019623-9019642 | None:intergenic | 45.0% | |
| TGACGAATTGGGCAAATCTG+AGG | - | chr1_3:9019681-9019700 | Msa0102260:CDS | 45.0% | |
| ! | ACTGATGGATGACTTCCTAG+AGG | - | chr1_3:9019720-9019739 | Msa0102260:CDS | 45.0% |
| CAGCAAATTTCTCCACCTCT+AGG | + | chr1_3:9019738-9019757 | None:intergenic | 45.0% | |
| CTAGAGGTGGAGAAATTTGC+TGG | - | chr1_3:9019736-9019755 | Msa0102260:CDS | 45.0% | |
| GAAAAGCTATCAATCCCACG+GGG | + | chr1_3:9019952-9019971 | None:intergenic | 45.0% | |
| ATGGCTAAGGATGCTGATGT+AGG | - | chr1_3:9020015-9020034 | Msa0102260:CDS | 45.0% | |
| TTCAGCTACAGAGTCTTGGA+TGG | + | chr1_3:9020091-9020110 | None:intergenic | 45.0% | |
| ! | TCACATGGAGTATCAGAAGC+TGG | + | chr1_3:9020129-9020148 | None:intergenic | 45.0% |
| GCATACACTCAGAAGGTTCT+TGG | + | chr1_3:9020209-9020228 | None:intergenic | 45.0% | |
| AATCCTGAGGTTCCTGATGA+TGG | - | chr1_3:9020609-9020628 | Msa0102260:intron | 45.0% | |
| TTTCCATCATCAGGAACCTC+AGG | + | chr1_3:9020615-9020634 | None:intergenic | 45.0% | |
| CACGTCACAAAAGTTCTCCA+TGG | - | chr1_3:9020662-9020681 | Msa0102260:intron | 45.0% | |
| GTCACAAAAGTTCTCCATGG+AGG | - | chr1_3:9020665-9020684 | Msa0102260:intron | 45.0% | |
| CAATTCCTCAAAGTCCTCCA+TGG | + | chr1_3:9020682-9020701 | None:intergenic | 45.0% | |
| ! | CACAATTGGCTTCTGCTCAA+AGG | - | chr1_3:9020811-9020830 | Msa0102260:CDS | 45.0% |
| CGAGACTCAACTCAAATGCA+TGG | - | chr1_3:9020848-9020867 | Msa0102260:CDS | 45.0% | |
| GAGATCTCATGAAGCAGCTT+TGG | - | chr1_3:9020977-9020996 | Msa0102260:intron | 45.0% | |
| CATAATCCATTCCTACTCGC+AGG | - | chr1_3:9021090-9021109 | Msa0102260:intron | 45.0% | |
| TGAAAAGTTAGCCGAGTGTC+AGG | - | chr1_3:9021463-9021482 | Msa0102260:CDS | 45.0% | |
| GCATCCTCAAACAGAACCAA+TGG | - | chr1_3:9021523-9021542 | Msa0102260:CDS | 45.0% | |
| !! | GATCCCATTGGTTCTGTTTG+AGG | + | chr1_3:9021530-9021549 | None:intergenic | 45.0% |
| CCACCTGATCCTGCAAATTT+GGG | + | chr1_3:9021610-9021629 | None:intergenic | 45.0% | |
| TCCACCTGATCCTGCAAATT+TGG | + | chr1_3:9021611-9021630 | None:intergenic | 45.0% | |
| TGGATGGTGTACAGGAGATA+TGG | + | chr1_3:9021741-9021760 | None:intergenic | 45.0% | |
| ! | GATGAAGAGGCTGACTTTGT+AGG | + | chr1_3:9021773-9021792 | None:intergenic | 45.0% |
| AGTGGAAGAAGCTGATGAAG+AGG | + | chr1_3:9021786-9021805 | None:intergenic | 45.0% | |
| ! | ATGTTTTTCCGGTGTAGGAG+TGG | + | chr1_3:9021804-9021823 | None:intergenic | 45.0% |
| ACTCCTACACCGGAAAAACA+TGG | - | chr1_3:9021803-9021822 | Msa0102260:intron | 45.0% | |
| ! | AAACCTCGGCCATGTTTTTC+CGG | + | chr1_3:9021815-9021834 | None:intergenic | 45.0% |
| ! | AACCGGTCATTGAGCTTTTG+CGG | - | chr1_3:9021862-9021881 | Msa0102260:intron | 45.0% |
| ! | ATTGAGCTTTTGCGGCATAC+AGG | - | chr1_3:9021870-9021889 | Msa0102260:intron | 45.0% |
| AACGAAATTGAGCTTGTGGG+AGG | - | chr1_3:9021971-9021990 | Msa0102260:intron | 45.0% | |
| !! | TAAAAGAAATAATAATAAAT+GGG | + | chr1_3:9017087-9017106 | None:intergenic | 5.0% |
| !! | ATAAAAGAAATAATAATAAA+TGG | + | chr1_3:9017088-9017107 | None:intergenic | 5.0% |
| TATTAAGGAGGAGGTGGCAG+TGG | + | chr1_3:9017003-9017022 | None:intergenic | 50.0% | |
| GAAACTGACTGCTGAGGATC+AGG | - | chr1_3:9018655-9018674 | Msa0102260:CDS | 50.0% | |
| GATCAGGCGTCACAGTTAGA+CGG | - | chr1_3:9018671-9018690 | Msa0102260:CDS | 50.0% | |
| ! | CAGGTCTGCTGCTGATAATG+CGG | - | chr1_3:9018844-9018863 | Msa0102260:CDS | 50.0% |
| ! | CTGATAATGCGGCTCTGTCT+AGG | - | chr1_3:9018855-9018874 | Msa0102260:CDS | 50.0% |
| GCTGAGTGTCAAAGGTTACG+TGG | - | chr1_3:9019127-9019146 | Msa0102260:CDS | 50.0% | |
| GATGGATGACTTCCTAGAGG+TGG | - | chr1_3:9019723-9019742 | Msa0102260:CDS | 50.0% | |
| ATCAGAAGCTGGCACATCGA+CGG | + | chr1_3:9020118-9020137 | None:intergenic | 50.0% | |
| ! | CACGACTTCGTGTTGTTCCT+TGG | - | chr1_3:9020267-9020286 | Msa0102260:CDS | 50.0% |
| CTGTCATTGCTTCTCTGCCA+AGG | + | chr1_3:9020287-9020306 | None:intergenic | 50.0% | |
| CAATCCCTGCTCTAATCCTG+AGG | - | chr1_3:9020596-9020615 | Msa0102260:intron | 50.0% | |
| GGAACCTCAGGATTAGAGCA+GGG | + | chr1_3:9020603-9020622 | None:intergenic | 50.0% | |
| AGGAACCTCAGGATTAGAGC+AGG | + | chr1_3:9020604-9020623 | None:intergenic | 50.0% | |
| GTTCTCCATGGAGGACTTTG+AGG | - | chr1_3:9020674-9020693 | Msa0102260:intron | 50.0% | |
| ! | AGCAGCTTTGGCAAAGTGCA+AGG | - | chr1_3:9020989-9021008 | Msa0102260:intron | 50.0% |
| ! | GCTTCACAGAGCATCAACCT+CGG | - | chr1_3:9021582-9021601 | Msa0102260:intron | 50.0% |
| GAGCCCAAATTTGCAGGATC+AGG | - | chr1_3:9021604-9021623 | Msa0102260:intron | 50.0% | |
| CCCAAATTTGCAGGATCAGG+TGG | - | chr1_3:9021607-9021626 | Msa0102260:intron | 50.0% | |
| TTTGCAGGATCAGGTGGAGA+TGG | - | chr1_3:9021613-9021632 | Msa0102260:intron | 50.0% | |
| !! | GAGATGGACGGAGCTAGTTT+TGG | - | chr1_3:9021629-9021648 | Msa0102260:intron | 50.0% |
| AGCTTCTTCCACTCCTACAC+CGG | - | chr1_3:9021793-9021812 | Msa0102260:intron | 50.0% | |
| TGCCGCAAAAGCTCAATGAC+CGG | + | chr1_3:9021867-9021886 | None:intergenic | 50.0% | |
| !! | AAGGTGAATAGTGTCGGCGG+TGG | + | chr1_3:9017446-9017465 | None:intergenic | 55.0% |
| GCTGCTGAATTGGACTCTGC+TGG | - | chr1_3:9017710-9017729 | Msa0102260:CDS | 55.0% | |
| !! | TTCACGTCTGACGGGTTTGG+AGG | - | chr1_3:9018329-9018348 | Msa0102260:CDS | 55.0% |
| GTAGCTGAAGAGGCTGTCTC+AGG | - | chr1_3:9018480-9018499 | Msa0102260:CDS | 55.0% | |
| ! | CATGTTAGAGCGCTCCTGCA+AGG | + | chr1_3:9018882-9018901 | None:intergenic | 55.0% |
| !! | TCAGGCACCGGAGAGAAATG+AGG | + | chr1_3:9019274-9019293 | None:intergenic | 55.0% |
| TCGAGGGAGAAATCAGGCAC+CGG | + | chr1_3:9019286-9019305 | None:intergenic | 55.0% | |
| CGAGAAGTTGTGCCGAGTCT+TGG | - | chr1_3:9019608-9019627 | Msa0102260:CDS | 55.0% | |
| !! | GGAGACGCTTGGCTTTGCAA+TGG | + | chr1_3:9019904-9019923 | None:intergenic | 55.0% |
| TATCAATCCCACGGGGACTG+GGG | + | chr1_3:9019945-9019964 | None:intergenic | 55.0% | |
| CTATCAATCCCACGGGGACT+GGG | + | chr1_3:9019946-9019965 | None:intergenic | 55.0% | |
| TCAGAAGCTGGCACATCGAC+GGG | + | chr1_3:9020117-9020136 | None:intergenic | 55.0% | |
| AACAGGCCTGCGAGTAGGAA+TGG | + | chr1_3:9021099-9021118 | None:intergenic | 55.0% | |
| TTGTGAACAGGCCTGCGAGT+AGG | + | chr1_3:9021104-9021123 | None:intergenic | 55.0% | |
| ACCTCGGAGCCCAAATTTGC+AGG | - | chr1_3:9021598-9021617 | Msa0102260:intron | 55.0% | |
| TCCTGCAAATTTGGGCTCCG+AGG | + | chr1_3:9021602-9021621 | None:intergenic | 55.0% | |
| CAGGATCAGGTGGAGATGGA+CGG | - | chr1_3:9021617-9021636 | Msa0102260:intron | 55.0% | |
| ! | CGGCCATGTTTTTCCGGTGT+AGG | + | chr1_3:9021809-9021828 | None:intergenic | 55.0% |
| ACACCGGAAAAACATGGCCG+AGG | - | chr1_3:9021809-9021828 | Msa0102260:intron | 55.0% | |
| TCATGAAGGGGTTCGCAACC+TGG | + | chr1_3:9021948-9021967 | None:intergenic | 55.0% | |
| !! | GAGAGGGTGCCATGAATGTC+TGG | - | chr1_3:9022009-9022028 | Msa0102260:intron | 55.0% |
| ! | GCTTCTGCCTTTTCCCAGCC+TGG | + | chr1_3:9018590-9018609 | None:intergenic | 60.0% |
| GGCTCTGTCTAGGTCCTTGC+AGG | - | chr1_3:9018865-9018884 | Msa0102260:CDS | 60.0% | |
| TGTGCAAGTGCAGCAGGACC+AGG | + | chr1_3:9019172-9019191 | None:intergenic | 60.0% | |
| ATCCTGCAGCAGGAGACGCT+TGG | + | chr1_3:9019915-9019934 | None:intergenic | 60.0% | |
| ATCAATCCCACGGGGACTGG+GGG | + | chr1_3:9019944-9019963 | None:intergenic | 60.0% | |
| GCTATCAATCCCACGGGGAC+TGG | + | chr1_3:9019947-9019966 | None:intergenic | 60.0% | |
| CGCAGGCCTGTTCACAACAG+TGG | - | chr1_3:9021107-9021126 | Msa0102260:intron | 60.0% | |
| !! | GGAGGTGGCAGTGGTAGTGG+TGG | + | chr1_3:9016994-9017013 | None:intergenic | 65.0% |
| GGAGGAGGTGGCAGTGGTAG+TGG | + | chr1_3:9016997-9017016 | None:intergenic | 65.0% | |
| AGCCAAGCGTCTCCTGCTGC+AGG | - | chr1_3:9019910-9019929 | Msa0102260:CDS | 65.0% | |
| ! | GGGGCTGGTGATCCTGCAGC+AGG | + | chr1_3:9019925-9019944 | None:intergenic | 70.0% |
| TCACCAGCCCCCAGTCCCCG+TGG | - | chr1_3:9019934-9019953 | Msa0102260:CDS | 75.0% | |
| CACCAGCCCCCAGTCCCCGT+GGG | - | chr1_3:9019935-9019954 | Msa0102260:CDS | 75.0% | |
| ATCCCACGGGGACTGGGGGC+TGG | + | chr1_3:9019940-9019959 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 9016907 | 9022295 | 9016907 | ID=Msa0102260;Name=Msa0102260 |
| chr1_3 | mRNA | 9016907 | 9022295 | 9016907 | ID=Msa0102260-mRNA-1;Parent=Msa0102260;Name=Msa0102260-mRNA-1;_AED=0.07;_eAED=0.07;_QI=253|1|1|1|0.8|0.66|6|421|1081 |
| chr1_3 | exon | 9016907 | 9017762 | 9016907 | ID=Msa0102260-mRNA-1:exon:3633;Parent=Msa0102260-mRNA-1 |
| chr1_3 | exon | 9017855 | 9017897 | 9017855 | ID=Msa0102260-mRNA-1:exon:3632;Parent=Msa0102260-mRNA-1 |
| chr1_3 | exon | 9018169 | 9020611 | 9018169 | ID=Msa0102260-mRNA-1:exon:3631;Parent=Msa0102260-mRNA-1 |
| chr1_3 | exon | 9020701 | 9020920 | 9020701 | ID=Msa0102260-mRNA-1:exon:3630;Parent=Msa0102260-mRNA-1 |
| chr1_3 | exon | 9021448 | 9021583 | 9021448 | ID=Msa0102260-mRNA-1:exon:3629;Parent=Msa0102260-mRNA-1 |
| chr1_3 | exon | 9022074 | 9022295 | 9022074 | ID=Msa0102260-mRNA-1:exon:3628;Parent=Msa0102260-mRNA-1 |
| chr1_3 | five_prime_UTR | 9022074 | 9022295 | 9022074 | ID=Msa0102260-mRNA-1:five_prime_utr;Parent=Msa0102260-mRNA-1 |
| chr1_3 | five_prime_UTR | 9021553 | 9021583 | 9021553 | ID=Msa0102260-mRNA-1:five_prime_utr;Parent=Msa0102260-mRNA-1 |
| chr1_3 | CDS | 9021448 | 9021552 | 9021448 | ID=Msa0102260-mRNA-1:cds;Parent=Msa0102260-mRNA-1 |
| chr1_3 | CDS | 9020701 | 9020920 | 9020701 | ID=Msa0102260-mRNA-1:cds;Parent=Msa0102260-mRNA-1 |
| chr1_3 | CDS | 9018169 | 9020611 | 9018169 | ID=Msa0102260-mRNA-1:cds;Parent=Msa0102260-mRNA-1 |
| chr1_3 | CDS | 9017855 | 9017897 | 9017855 | ID=Msa0102260-mRNA-1:cds;Parent=Msa0102260-mRNA-1 |
| chr1_3 | CDS | 9017328 | 9017762 | 9017328 | ID=Msa0102260-mRNA-1:cds;Parent=Msa0102260-mRNA-1 |
| chr1_3 | three_prime_UTR | 9016907 | 9017327 | 9016907 | ID=Msa0102260-mRNA-1:three_prime_utr;Parent=Msa0102260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
