Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115620 | XP_013470405.1 | 97.952 | 537 | 10 | 1 | 1 | 536 | 1 | 537 | 0.0 | 1087 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115620 | sp|O49696|ALMTC_ARATH | 53.005 | 549 | 209 | 8 | 22 | 536 | 27 | 560 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115620 | A0A072VSQ7 | 97.952 | 537 | 10 | 1 | 1 | 536 | 1 | 537 | 0.0 | 1087 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045310 | Msa0115620 | 0.867091 | 1.766921e-65 | -8.615850e-47 |
| Msa0115620 | Msa0129640 | 0.801516 | 8.677571e-49 | -8.615850e-47 |
| Msa0115620 | Msa0873910 | 0.819319 | 1.236080e-52 | -8.615850e-47 |
| Msa0115620 | Msa0909810 | 0.859980 | 2.840944e-63 | -8.615850e-47 |
| Msa0115620 | Msa0975960 | 0.819626 | 1.052417e-52 | -8.615850e-47 |
| Msa0115620 | Msa1412410 | 0.805876 | 1.079972e-49 | -8.615850e-47 |
| Msa0115620 | Msa1427860 | 0.804288 | 2.321265e-49 | -8.615850e-47 |
| Msa0115620 | Msa1454360 | 0.854989 | 8.520192e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115620 | MtrunA17_Chr1g0212291 | 97.952 | 537 | 10 | 1 | 1 | 536 | 1 | 537 | 0.0 | 1087 |
| Msa0115620 | MtrunA17_Chr1g0212201 | 81.051 | 533 | 95 | 2 | 4 | 534 | 7 | 535 | 0.0 | 903 |
| Msa0115620 | MtrunA17_Chr1g0212251 | 80.935 | 535 | 92 | 5 | 4 | 534 | 3 | 531 | 0.0 | 895 |
| Msa0115620 | MtrunA17_Chr4g0054741 | 59.294 | 538 | 200 | 6 | 1 | 534 | 11 | 533 | 0.0 | 601 |
| Msa0115620 | MtrunA17_Chr5g0400471 | 55.769 | 468 | 172 | 6 | 94 | 533 | 3 | 463 | 7.88e-168 | 483 |
| Msa0115620 | MtrunA17_Chr4g0054771 | 56.171 | 397 | 158 | 4 | 140 | 534 | 3 | 385 | 1.48e-146 | 426 |
| Msa0115620 | MtrunA17_Chr1g0188871 | 40.933 | 386 | 217 | 5 | 11 | 395 | 23 | 398 | 4.90e-97 | 302 |
| Msa0115620 | MtrunA17_Chr1g0188881 | 41.860 | 344 | 192 | 4 | 37 | 378 | 51 | 388 | 2.45e-93 | 293 |
| Msa0115620 | MtrunA17_Chr4g0025591 | 40.449 | 356 | 201 | 3 | 23 | 370 | 19 | 371 | 1.38e-85 | 273 |
| Msa0115620 | MtrunA17_Chr7g0267471 | 43.944 | 355 | 190 | 3 | 1 | 351 | 1 | 350 | 5.98e-84 | 268 |
| Msa0115620 | MtrunA17_Chr2g0321971 | 42.587 | 317 | 174 | 3 | 38 | 351 | 37 | 348 | 1.09e-78 | 254 |
| Msa0115620 | MtrunA17_Chr6g0484691 | 33.207 | 527 | 308 | 12 | 15 | 505 | 58 | 576 | 4.85e-78 | 256 |
| Msa0115620 | MtrunA17_Chr8g0390931 | 31.898 | 511 | 304 | 11 | 25 | 505 | 47 | 543 | 5.20e-78 | 256 |
| Msa0115620 | MtrunA17_Chr7g0259731 | 38.486 | 317 | 185 | 4 | 43 | 355 | 61 | 371 | 9.13e-75 | 243 |
| Msa0115620 | MtrunA17_Chr8g0390921 | 30.545 | 514 | 319 | 10 | 24 | 505 | 46 | 553 | 2.90e-71 | 238 |
| Msa0115620 | MtrunA17_Chr1g0210101 | 32.172 | 488 | 297 | 11 | 36 | 505 | 111 | 582 | 9.94e-71 | 237 |
| Msa0115620 | MtrunA17_Chr2g0321961 | 37.838 | 370 | 219 | 6 | 17 | 380 | 13 | 377 | 2.31e-69 | 229 |
| Msa0115620 | MtrunA17_Chr8g0390901 | 28.864 | 440 | 284 | 9 | 92 | 505 | 9 | 445 | 1.16e-58 | 202 |
| Msa0115620 | MtrunA17_Chr4g0054761 | 58.741 | 143 | 58 | 1 | 1 | 142 | 11 | 153 | 5.53e-36 | 131 |
| Msa0115620 | MtrunA17_Chr5g0400481 | 51.579 | 95 | 46 | 0 | 2 | 96 | 21 | 115 | 6.06e-27 | 105 |
| Msa0115620 | MtrunA17_Chr1g0209601 | 77.551 | 49 | 10 | 1 | 11 | 59 | 5 | 52 | 4.38e-18 | 78.2 |
| Msa0115620 | MtrunA17_Chr8g0390911 | 45.070 | 71 | 38 | 1 | 24 | 93 | 50 | 120 | 2.66e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115620 | AT4G17970.1 | 53.005 | 549 | 209 | 8 | 22 | 536 | 27 | 560 | 0.0 | 565 |
| Msa0115620 | AT5G46610.1 | 55.212 | 518 | 205 | 8 | 24 | 520 | 24 | 535 | 0.0 | 550 |
| Msa0115620 | AT5G46600.1 | 53.131 | 495 | 208 | 4 | 32 | 506 | 36 | 526 | 1.27e-179 | 516 |
| Msa0115620 | AT5G46610.2 | 51.351 | 518 | 201 | 9 | 24 | 520 | 24 | 511 | 4.22e-172 | 496 |
| Msa0115620 | AT5G46610.3 | 48.842 | 518 | 191 | 9 | 24 | 520 | 24 | 488 | 2.09e-156 | 456 |
| Msa0115620 | AT4G00910.1 | 35.021 | 474 | 246 | 7 | 34 | 505 | 54 | 467 | 8.98e-97 | 302 |
| Msa0115620 | AT1G08440.1 | 40.698 | 344 | 199 | 2 | 38 | 378 | 13 | 354 | 7.66e-80 | 259 |
| Msa0115620 | AT3G18440.1 | 31.225 | 506 | 307 | 9 | 32 | 505 | 73 | 569 | 2.14e-76 | 253 |
| Msa0115620 | AT3G11680.2 | 38.947 | 380 | 225 | 3 | 1 | 378 | 1 | 375 | 5.88e-76 | 248 |
| Msa0115620 | AT3G11680.1 | 38.992 | 377 | 223 | 3 | 4 | 378 | 2 | 373 | 4.03e-75 | 246 |
| Msa0115620 | AT1G18420.1 | 30.755 | 543 | 320 | 14 | 6 | 505 | 48 | 577 | 1.08e-72 | 242 |
| Msa0115620 | AT1G08430.1 | 38.329 | 347 | 206 | 3 | 38 | 378 | 13 | 357 | 6.77e-72 | 238 |
| Msa0115620 | AT2G27240.2 | 38.617 | 347 | 202 | 4 | 38 | 378 | 13 | 354 | 3.07e-70 | 233 |
| Msa0115620 | AT1G18420.2 | 30.754 | 504 | 302 | 12 | 39 | 505 | 1 | 494 | 5.88e-69 | 230 |
| Msa0115620 | AT1G25480.1 | 30.980 | 510 | 318 | 12 | 15 | 505 | 47 | 541 | 1.60e-68 | 230 |
| Msa0115620 | AT2G27240.1 | 36.957 | 368 | 205 | 4 | 38 | 378 | 13 | 380 | 3.12e-68 | 228 |
| Msa0115620 | AT2G17470.1 | 30.801 | 487 | 310 | 11 | 38 | 505 | 31 | 509 | 1.11e-66 | 225 |
| Msa0115620 | AT2G17470.2 | 30.801 | 487 | 310 | 11 | 38 | 505 | 53 | 531 | 1.75e-66 | 225 |
| Msa0115620 | AT1G68600.1 | 29.693 | 522 | 336 | 13 | 4 | 508 | 25 | 532 | 2.41e-64 | 219 |
| Msa0115620 | AT4G17585.1 | 58.571 | 70 | 24 | 2 | 22 | 90 | 27 | 92 | 1.94e-19 | 85.5 |
Find 85 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGGCGTTCTGGGAGTTT+TGG | 0.203211 | 1_3:+34526942 | None:intergenic |
| GTTTAGTGAAAAGGACAATT+TGG | 0.226534 | 1_3:-34529183 | Msa0115620:CDS |
| AACAGGCAATGCAAGCTAAT+TGG | 0.239706 | 1_3:-34528029 | Msa0115620:intron |
| TCATAATTCTTCTTTATATA+AGG | 0.249336 | 1_3:+34528585 | None:intergenic |
| CAATCTCAACGAAGCTTTAC+AGG | 0.257338 | 1_3:-34527043 | Msa0115620:CDS |
| TGTTTCATTGTTGTATCTAA+TGG | 0.262149 | 1_3:-34529095 | Msa0115620:CDS |
| GTGAATGACTTGCCTTCTTA+TGG | 0.265915 | 1_3:-34526556 | Msa0115620:CDS |
| AACTCTGTCAGCAGGATTAT+TGG | 0.276589 | 1_3:-34528872 | Msa0115620:CDS |
| CACTTCTTTGCTTGTGGAGA+TGG | 0.301215 | 1_3:-34526704 | Msa0115620:CDS |
| TGATACAATCATCAAATTAA+AGG | 0.304569 | 1_3:+34528536 | None:intergenic |
| ACCAGTTTGGAAATACAAAT+AGG | 0.312997 | 1_3:+34528427 | None:intergenic |
| GCTTCGTAGCACTTGTAAAT+AGG | 0.321095 | 1_3:+34528169 | None:intergenic |
| AGAAGGGCAAGGACAGAAAA+AGG | 0.332877 | 1_3:-34526812 | Msa0115620:CDS |
| CCGGGAGTGCTCTTTCGATT+TGG | 0.334816 | 1_3:+34526846 | None:intergenic |
| CCCTATTTGTATTTCCAAAC+TGG | 0.338641 | 1_3:-34528428 | Msa0115620:CDS |
| TGGCAGCTTCTTGAGTATCT+TGG | 0.350454 | 1_3:+34528003 | None:intergenic |
| TATGGATAATGTTGAAGAAT+TGG | 0.350765 | 1_3:-34526662 | Msa0115620:CDS |
| GTGTCTTCAGTCTGAAATTC+AGG | 0.356254 | 1_3:-34527902 | Msa0115620:intron |
| GATAAAGTGAAAAGATTTCC+AGG | 0.363299 | 1_3:-34529205 | Msa0115620:CDS |
| TAAGCCTTCAAGCTTTGATA+TGG | 0.366629 | 1_3:+34528380 | None:intergenic |
| AAAGGACTTAATAGAGGATT+AGG | 0.369561 | 1_3:-34528895 | Msa0115620:CDS |
| ATCAAAAGTACTAAAGGTTA+TGG | 0.379933 | 1_3:-34527115 | Msa0115620:CDS |
| TCTATTAAGTCCTTTGCATA+AGG | 0.384312 | 1_3:+34528903 | None:intergenic |
| AAAAGGACAATTTGGAAAGT+TGG | 0.395542 | 1_3:-34529175 | Msa0115620:CDS |
| ATGGATAATGTTGAAGAATT+GGG | 0.407626 | 1_3:-34526661 | Msa0115620:CDS |
| AGGTCTTCTCCTGACCAGTT+TGG | 0.409971 | 1_3:+34528414 | None:intergenic |
| CCAGTTTGGAAATACAAATA+GGG | 0.412732 | 1_3:+34528428 | None:intergenic |
| ATAAAGAAGAATTATGACTA+TGG | 0.417510 | 1_3:-34528579 | Msa0115620:CDS |
| GATTTCCAGGTTTAGTGAAA+AGG | 0.418815 | 1_3:-34529192 | Msa0115620:CDS |
| ACAGGCAATGCAAGCTAATT+GGG | 0.419732 | 1_3:-34528028 | Msa0115620:intron |
| TTTGTATTTCCAAACTGGTC+AGG | 0.429187 | 1_3:-34528423 | Msa0115620:CDS |
| GGCTTAGCCAACTCTATAGA+AGG | 0.433695 | 1_3:-34528363 | Msa0115620:intron |
| CATGACTGTGGTTGTGGTCA+TGG | 0.437773 | 1_3:-34529029 | Msa0115620:CDS |
| GTGGTTCATTCATTGAAAGT+TGG | 0.442918 | 1_3:-34529133 | Msa0115620:CDS |
| TGCTTTCACTTCTTTGCTTG+TGG | 0.442934 | 1_3:-34526710 | Msa0115620:CDS |
| CCAAATCGAAAGAGCACTCC+CGG | 0.448551 | 1_3:-34526846 | Msa0115620:CDS |
| TAATGGAACCATTGTACAAA+GGG | 0.453257 | 1_3:-34529078 | Msa0115620:CDS |
| TAAAAGTGATTATTGTTCTC+CGG | 0.455465 | 1_3:-34526875 | Msa0115620:CDS |
| GGCTGTCATGACTGTGGTTG+TGG | 0.457254 | 1_3:-34529035 | Msa0115620:CDS |
| ACGCTTGTTCCTTATGCTGT+TGG | 0.462988 | 1_3:+34527092 | None:intergenic |
| GGCAAAACTAGATCATGTTA+TGG | 0.464191 | 1_3:-34526680 | Msa0115620:CDS |
| TTGATATGGTGGATTTATGA+AGG | 0.464739 | 1_3:+34528394 | None:intergenic |
| TCCACCATATCAAAGCTTGA+AGG | 0.473767 | 1_3:-34528384 | Msa0115620:CDS |
| AGGTTATGGCCAACAGCATA+AGG | 0.474290 | 1_3:-34527101 | Msa0115620:CDS |
| GCCTTCAAGCTTTGATATGG+TGG | 0.475091 | 1_3:+34528383 | None:intergenic |
| TTATGCAAAGGACTTAATAG+AGG | 0.486073 | 1_3:-34528901 | Msa0115620:CDS |
| TTCTTTGCTTGTGGAGATGG+TGG | 0.486494 | 1_3:-34526701 | Msa0115620:CDS |
| ATTGTTGCCATGGGATCCTA+TGG | 0.488776 | 1_3:+34527983 | None:intergenic |
| AGAAGTATCAAAAGTACTAA+AGG | 0.492579 | 1_3:-34527121 | Msa0115620:CDS |
| TTTCCTATCCCTTTGTACAA+TGG | 0.496607 | 1_3:+34529070 | None:intergenic |
| AATAGCAACACCGATGCATA+TGG | 0.504570 | 1_3:+34528464 | None:intergenic |
| AAAGAAGTGAAAGCAGCAAA+AGG | 0.520550 | 1_3:+34526718 | None:intergenic |
| CGTAGATAATATCTTGAGCT+TGG | 0.520859 | 1_3:-34528505 | Msa0115620:CDS |
| GATTGTTCGAGAGTGTTTCA+AGG | 0.521322 | 1_3:+34527061 | None:intergenic |
| TATAGATCGCGGATTGACCT+TGG | 0.524660 | 1_3:+34527171 | None:intergenic |
| GGATTAGGAACTCTGTCAGC+AGG | 0.527709 | 1_3:-34528880 | Msa0115620:CDS |
| GTGGTCATGGAGTTTACAGT+AGG | 0.539836 | 1_3:-34529016 | Msa0115620:intron |
| GAACCATTGTACAAAGGGAT+AGG | 0.540699 | 1_3:-34529073 | Msa0115620:CDS |
| TACTCTGCTCCTCCATAAGA+AGG | 0.541093 | 1_3:+34526544 | None:intergenic |
| TACACTGTCGTAGCACTGCA+TGG | 0.544060 | 1_3:-34527925 | Msa0115620:CDS |
| CAAAGATGATCCAAGAAAAG+TGG | 0.544252 | 1_3:-34529152 | Msa0115620:CDS |
| GTCATAGTCTTACTCAGTTG+TGG | 0.547431 | 1_3:+34526781 | None:intergenic |
| CACTTTAGAGAGTTCAGAGA+TGG | 0.548017 | 1_3:-34526628 | Msa0115620:CDS |
| ATTGTTCGAGAGTGTTTCAA+GGG | 0.555202 | 1_3:+34527062 | None:intergenic |
| GTAGTGCTTCTGAGAACTCA+AGG | 0.566975 | 1_3:+34526740 | None:intergenic |
| AATGACTTGCCTTCTTATGG+AGG | 0.579796 | 1_3:-34526553 | Msa0115620:CDS |
| GCACTTGTAAATAGGATCCT+CGG | 0.579858 | 1_3:+34528177 | None:intergenic |
| AGTGATTATTGTTCTCCGGT+CGG | 0.586137 | 1_3:-34526871 | Msa0115620:CDS |
| GAGTATCTTGGAGATGCACC+TGG | 0.590500 | 1_3:-34528838 | Msa0115620:CDS |
| GAGCTTCTGCTACTTATGTG+AGG | 0.592460 | 1_3:-34528614 | Msa0115620:CDS |
| CGCGTCTCTACCATATGCAT+CGG | 0.595667 | 1_3:-34528474 | Msa0115620:CDS |
| CTAATGGAACCATTGTACAA+AGG | 0.603339 | 1_3:-34529079 | Msa0115620:CDS |
| GATACTCAAGAAGCTGCCAT+AGG | 0.605358 | 1_3:-34527999 | Msa0115620:CDS |
| TAATGATGCAGTTACTGTTG+TGG | 0.607091 | 1_3:-34528245 | Msa0115620:intron |
| ACACTGTCGTAGCACTGCAT+GGG | 0.611183 | 1_3:-34527924 | Msa0115620:CDS |
| GAAGCTGCCATAGGATCCCA+TGG | 0.613495 | 1_3:-34527990 | Msa0115620:CDS |
| TGGCAACAATATGCAAAAGT+CGG | 0.625675 | 1_3:-34527970 | Msa0115620:CDS |
| TCTTTCGATTTGGTTCCGAC+CGG | 0.628402 | 1_3:+34526856 | None:intergenic |
| CAAATCGAAAGAGCACTCCC+GGG | 0.635370 | 1_3:-34526845 | Msa0115620:CDS |
| AAGAATCTTTGTATAGATCG+CGG | 0.642132 | 1_3:+34527160 | None:intergenic |
| CTCGAGCCTAGTAAAAGCTG+CGG | 0.662648 | 1_3:+34526994 | None:intergenic |
| TGTTGTGGCTGTCATGACTG+TGG | 0.668854 | 1_3:-34529041 | Msa0115620:CDS |
| AAATGAAGATGATTCATCCG+AGG | 0.672197 | 1_3:-34528194 | Msa0115620:CDS |
| AGCTCAAGATATTATCTACG+CGG | 0.726421 | 1_3:+34528508 | None:intergenic |
| TATGGCTCATGAAGACACCA+AGG | 0.726749 | 1_3:-34527188 | Msa0115620:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAATTCTTCTTTATATA+AGG | + | chr1_3:34527232-34527251 | None:intergenic | 15.0% |
| !! | CTAATAATTAATGATGAAAA+AGG | - | chr1_3:34527502-34527521 | Msa0115620:intron | 15.0% |
| !!! | TATTATTTTCTTCAACAAAA+GGG | + | chr1_3:34527720-34527739 | None:intergenic | 15.0% |
| !!! | ATATTATTTTCTTCAACAAA+AGG | + | chr1_3:34527721-34527740 | None:intergenic | 15.0% |
| !! | AGAAAATAATATCATGAAAT+TGG | - | chr1_3:34527729-34527748 | Msa0115620:intron | 15.0% |
| !!! | AGTTATATTAAAGATTTTGA+GGG | + | chr1_3:34528098-34528117 | None:intergenic | 15.0% |
| !! | TACACATTTCATTATTAAAT+TGG | - | chr1_3:34528522-34528541 | Msa0115620:CDS | 15.0% |
| !! | ATAAAGAAGAATTATGACTA+TGG | - | chr1_3:34527235-34527254 | Msa0115620:intron | 20.0% |
| !! | TGATACAATCATCAAATTAA+AGG | + | chr1_3:34527281-34527300 | None:intergenic | 20.0% |
| !!! | TAATGATGAAAAAGGTTTTA+TGG | - | chr1_3:34527510-34527529 | Msa0115620:intron | 20.0% |
| !!! | AGGTACTAAATTATCTATTT+TGG | - | chr1_3:34527932-34527951 | Msa0115620:CDS | 20.0% |
| !!! | TTACTAGAAAAGTTTCTTTT+GGG | + | chr1_3:34527994-34528013 | None:intergenic | 20.0% |
| !!! | GCTTTTTATTTAGATTTTTG+AGG | + | chr1_3:34528068-34528087 | None:intergenic | 20.0% |
| !!! | GAGTTATATTAAAGATTTTG+AGG | + | chr1_3:34528099-34528118 | None:intergenic | 20.0% |
| !!! | TGAGCTTTTTTTAGTATTGT+TGG | + | chr1_3:34526559-34526578 | None:intergenic | 25.0% |
| ! | TGTTTCATTGTTGTATCTAA+TGG | - | chr1_3:34526719-34526738 | Msa0115620:CDS | 25.0% |
| ! | AATCATAATCAATACGTATG+AGG | + | chr1_3:34526881-34526900 | None:intergenic | 25.0% |
| !!! | GCATTTTTAATTGAGTATCT+TGG | - | chr1_3:34526964-34526983 | Msa0115620:CDS | 25.0% |
| ! | AATGGTTAAGCAAAACATTA+GGG | + | chr1_3:34527159-34527178 | None:intergenic | 25.0% |
| !! | TATTTTACCTTCTATAGAGT+TGG | + | chr1_3:34527461-34527480 | None:intergenic | 25.0% |
| ! | GTATCAATCTATATAACTGA+TGG | - | chr1_3:34527540-34527559 | Msa0115620:intron | 25.0% |
| ! | CTTATCATATAGAATTGAAC+AGG | - | chr1_3:34527768-34527787 | Msa0115620:intron | 25.0% |
| !! | GTTACTAGAAAAGTTTCTTT+TGG | + | chr1_3:34527995-34528014 | None:intergenic | 25.0% |
| !!! | TTTTCTAGTAACTAGAGAAT+GGG | - | chr1_3:34528003-34528022 | Msa0115620:CDS | 25.0% |
| ! | TCAGAAAAATTGCTTTAACT+TGG | - | chr1_3:34528311-34528330 | Msa0115620:intron | 25.0% |
| ! | GTTATGTTATTGATATCACA+TGG | - | chr1_3:34528393-34528412 | Msa0115620:CDS | 25.0% |
| !! | TCATTGATTATTATGTAGCT+AGG | - | chr1_3:34528439-34528458 | Msa0115620:CDS | 25.0% |
| ! | CGATATATGCATTTAACATA+TGG | - | chr1_3:34528608-34528627 | Msa0115620:CDS | 25.0% |
| !!! | AGAAGTATCAAAAGTACTAA+AGG | - | chr1_3:34528693-34528712 | Msa0115620:intron | 25.0% |
| !!! | ATCAAAAGTACTAAAGGTTA+TGG | - | chr1_3:34528699-34528718 | Msa0115620:intron | 25.0% |
| ! | TCATCAATCTTGAAAAAGTT+GGG | + | chr1_3:34528892-34528911 | None:intergenic | 25.0% |
| ! | TTCATCAATCTTGAAAAAGT+TGG | + | chr1_3:34528893-34528912 | None:intergenic | 25.0% |
| ! | TAAAAGTGATTATTGTTCTC+CGG | - | chr1_3:34528939-34528958 | Msa0115620:intron | 25.0% |
| ! | TATGGATAATGTTGAAGAAT+TGG | - | chr1_3:34529152-34529171 | Msa0115620:CDS | 25.0% |
| ! | ATGGATAATGTTGAAGAATT+GGG | - | chr1_3:34529153-34529172 | Msa0115620:CDS | 25.0% |
| CTAAAAAAAGCTCAAGCTAT+TGG | - | chr1_3:34526565-34526584 | Msa0115620:CDS | 30.0% | |
| GATAAAGTGAAAAGATTTCC+AGG | - | chr1_3:34526609-34526628 | Msa0115620:CDS | 30.0% | |
| GTTTAGTGAAAAGGACAATT+TGG | - | chr1_3:34526631-34526650 | Msa0115620:CDS | 30.0% | |
| AAAAGGACAATTTGGAAAGT+TGG | - | chr1_3:34526639-34526658 | Msa0115620:CDS | 30.0% | |
| !! | AATGAATGAACCACTTTTCT+TGG | + | chr1_3:34526675-34526694 | None:intergenic | 30.0% |
| TAATGGAACCATTGTACAAA+GGG | - | chr1_3:34526736-34526755 | Msa0115620:CDS | 30.0% | |
| !! | TACGTATTGATTATGATTGC+AGG | - | chr1_3:34526883-34526902 | Msa0115620:CDS | 30.0% |
| !! | ACGTATTGATTATGATTGCA+GGG | - | chr1_3:34526884-34526903 | Msa0115620:CDS | 30.0% |
| TCTATTAAGTCCTTTGCATA+AGG | + | chr1_3:34526914-34526933 | None:intergenic | 30.0% | |
| TTATGCAAAGGACTTAATAG+AGG | - | chr1_3:34526913-34526932 | Msa0115620:CDS | 30.0% | |
| AAAGGACTTAATAGAGGATT+AGG | - | chr1_3:34526919-34526938 | Msa0115620:CDS | 30.0% | |
| CAATGGTTAAGCAAAACATT+AGG | + | chr1_3:34527160-34527179 | None:intergenic | 30.0% | |
| ! | CTAATGTTTTGCTTAACCAT+TGG | - | chr1_3:34527158-34527177 | Msa0115620:CDS | 30.0% |
| CCAGTTTGGAAATACAAATA+GGG | + | chr1_3:34527389-34527408 | None:intergenic | 30.0% | |
| ACCAGTTTGGAAATACAAAT+AGG | + | chr1_3:34527390-34527409 | None:intergenic | 30.0% | |
| !! | TTGATATGGTGGATTTATGA+AGG | + | chr1_3:34527423-34527442 | None:intergenic | 30.0% |
| !!! | TGTTTTAGACTCTAAAGCTA+AGG | - | chr1_3:34527668-34527687 | Msa0115620:intron | 30.0% |
| !! | CTTTTCTAGTAACTAGAGAA+TGG | - | chr1_3:34528002-34528021 | Msa0115620:CDS | 30.0% |
| ATAACTAGCTAGAGATATAG+TGG | + | chr1_3:34528273-34528292 | None:intergenic | 30.0% | |
| !! | TGGTTCTGTAGCTTTTTATA+AGG | - | chr1_3:34528331-34528350 | Msa0115620:intron | 30.0% |
| CAATAACATAACAGATTGAC+AGG | + | chr1_3:34528385-34528404 | None:intergenic | 30.0% | |
| !! | GCTATTGACTTCTCAATTAT+TGG | - | chr1_3:34528544-34528563 | Msa0115620:CDS | 30.0% |
| AAGAATCTTTGTATAGATCG+CGG | + | chr1_3:34528657-34528676 | None:intergenic | 30.0% | |
| ! | TTCACAGCTGTATTCATTTT+TGG | + | chr1_3:34529243-34529262 | None:intergenic | 30.0% |
| GATTTCCAGGTTTAGTGAAA+AGG | - | chr1_3:34526622-34526641 | Msa0115620:CDS | 35.0% | |
| ! | ATTGTCCTTTTCACTAAACC+TGG | + | chr1_3:34526630-34526649 | None:intergenic | 35.0% |
| CAAAGATGATCCAAGAAAAG+TGG | - | chr1_3:34526662-34526681 | Msa0115620:CDS | 35.0% | |
| GTGGTTCATTCATTGAAAGT+TGG | - | chr1_3:34526681-34526700 | Msa0115620:CDS | 35.0% | |
| CTAATGGAACCATTGTACAA+AGG | - | chr1_3:34526735-34526754 | Msa0115620:CDS | 35.0% | |
| TTTCCTATCCCTTTGTACAA+TGG | + | chr1_3:34526747-34526766 | None:intergenic | 35.0% | |
| GATAGGAAAAAATGCTGTTG+TGG | - | chr1_3:34526758-34526777 | Msa0115620:CDS | 35.0% | |
| !! | CGTATTGATTATGATTGCAG+GGG | - | chr1_3:34526885-34526904 | Msa0115620:CDS | 35.0% |
| !! | GTATTGATTATGATTGCAGG+GGG | - | chr1_3:34526886-34526905 | Msa0115620:CDS | 35.0% |
| !!! | ATTTTTCGAGCGGTTTTCAT+TGG | - | chr1_3:34527003-34527022 | Msa0115620:CDS | 35.0% |
| !!! | GTTTTGAGTTTTCTGTCTTG+TGG | - | chr1_3:34527124-34527143 | Msa0115620:CDS | 35.0% |
| CTTAACCATTGGATCATTGT+TGG | - | chr1_3:34527169-34527188 | Msa0115620:CDS | 35.0% | |
| CAAAACCAACAATGATCCAA+TGG | + | chr1_3:34527177-34527196 | None:intergenic | 35.0% | |
| AGCTCAAGATATTATCTACG+CGG | + | chr1_3:34527309-34527328 | None:intergenic | 35.0% | |
| CGTAGATAATATCTTGAGCT+TGG | - | chr1_3:34527309-34527328 | Msa0115620:intron | 35.0% | |
| CCCTATTTGTATTTCCAAAC+TGG | - | chr1_3:34527386-34527405 | Msa0115620:intron | 35.0% | |
| TTTGTATTTCCAAACTGGTC+AGG | - | chr1_3:34527391-34527410 | Msa0115620:intron | 35.0% | |
| ! | TAAGCCTTCAAGCTTTGATA+TGG | + | chr1_3:34527437-34527456 | None:intergenic | 35.0% |
| TAATGATGCAGTTACTGTTG+TGG | - | chr1_3:34527569-34527588 | Msa0115620:intron | 35.0% | |
| AAATGAAGATGATTCATCCG+AGG | - | chr1_3:34527620-34527639 | Msa0115620:intron | 35.0% | |
| ! | CTTTTGCATATTGTTGCCAT+GGG | + | chr1_3:34527843-34527862 | None:intergenic | 35.0% |
| ! | ACTTTTGCATATTGTTGCCA+TGG | + | chr1_3:34527844-34527863 | None:intergenic | 35.0% |
| TGGCAACAATATGCAAAAGT+CGG | - | chr1_3:34527844-34527863 | Msa0115620:intron | 35.0% | |
| TAGAACTCTCATTGCATTCT+CGG | + | chr1_3:34528158-34528177 | None:intergenic | 35.0% | |
| !! | ATTGTTCGAGAGTGTTTCAA+GGG | + | chr1_3:34528755-34528774 | None:intergenic | 35.0% |
| GAACTAAAAAAAGAAGGGCA+AGG | - | chr1_3:34528991-34529010 | Msa0115620:intron | 35.0% | |
| ! | AAGGACAGAAAAAGGTTTTG+AGG | - | chr1_3:34529010-34529029 | Msa0115620:intron | 35.0% |
| AAAGAAGTGAAAGCAGCAAA+AGG | + | chr1_3:34529099-34529118 | None:intergenic | 35.0% | |
| GGCAAAACTAGATCATGTTA+TGG | - | chr1_3:34529134-34529153 | Msa0115620:CDS | 35.0% | |
| GAACCATTGTACAAAGGGAT+AGG | - | chr1_3:34526741-34526760 | Msa0115620:CDS | 40.0% | |
| TCATGGAGTTTACAGTAGGT+AGG | - | chr1_3:34526802-34526821 | Msa0115620:CDS | 40.0% | |
| AACTCTGTCAGCAGGATTAT+TGG | - | chr1_3:34526942-34526961 | Msa0115620:CDS | 40.0% | |
| !!! | GGTGCTGCAGTTTTTGTTTT+AGG | - | chr1_3:34527024-34527043 | Msa0115620:CDS | 40.0% |
| !!! | TGGATCATTGTTGGTTTTGC+AGG | - | chr1_3:34527178-34527197 | Msa0115620:intron | 40.0% |
| AATAGCAACACCGATGCATA+TGG | + | chr1_3:34527353-34527372 | None:intergenic | 40.0% | |
| TCCACCATATCAAAGCTTGA+AGG | - | chr1_3:34527430-34527449 | Msa0115620:intron | 40.0% | |
| GCACTTGTAAATAGGATCCT+CGG | + | chr1_3:34527640-34527659 | None:intergenic | 40.0% | |
| GCTTCGTAGCACTTGTAAAT+AGG | + | chr1_3:34527648-34527667 | None:intergenic | 40.0% | |
| AACAGGCAATGCAAGCTAAT+TGG | - | chr1_3:34527785-34527804 | Msa0115620:intron | 40.0% | |
| ACAGGCAATGCAAGCTAATT+GGG | - | chr1_3:34527786-34527805 | Msa0115620:intron | 40.0% | |
| ! | GTGTCTTCAGTCTGAAATTC+AGG | - | chr1_3:34527912-34527931 | Msa0115620:CDS | 40.0% |
| AACAGATTGACAGGTAACCT+TGG | + | chr1_3:34528376-34528395 | None:intergenic | 40.0% | |
| !! | GATTGTTCGAGAGTGTTTCA+AGG | + | chr1_3:34528756-34528775 | None:intergenic | 40.0% |
| CAATCTCAACGAAGCTTTAC+AGG | - | chr1_3:34528771-34528790 | Msa0115620:intron | 40.0% | |
| TTGAAAAAGTTGGGCGTTCT+GGG | + | chr1_3:34528883-34528902 | None:intergenic | 40.0% | |
| AGTGATTATTGTTCTCCGGT+CGG | - | chr1_3:34528943-34528962 | Msa0115620:intron | 40.0% | |
| TCCCGGGAACTAAAAAAAGA+AGG | - | chr1_3:34528985-34529004 | Msa0115620:intron | 40.0% | |
| !!! | CCCTTCTTTTTTTAGTTCCC+GGG | + | chr1_3:34528989-34529008 | None:intergenic | 40.0% |
| CCCGGGAACTAAAAAAAGAA+GGG | - | chr1_3:34528986-34529005 | Msa0115620:intron | 40.0% | |
| !!! | GCCCTTCTTTTTTTAGTTCC+CGG | + | chr1_3:34528990-34529009 | None:intergenic | 40.0% |
| ! | GTCATAGTCTTACTCAGTTG+TGG | + | chr1_3:34529036-34529055 | None:intergenic | 40.0% |
| TGCTTTCACTTCTTTGCTTG+TGG | - | chr1_3:34529104-34529123 | Msa0115620:CDS | 40.0% | |
| ! | CACTTTAGAGAGTTCAGAGA+TGG | - | chr1_3:34529186-34529205 | Msa0115620:CDS | 40.0% |
| ! | GTGAATGACTTGCCTTCTTA+TGG | - | chr1_3:34529258-34529277 | Msa0115620:CDS | 40.0% |
| ! | AATGACTTGCCTTCTTATGG+AGG | - | chr1_3:34529261-34529280 | Msa0115620:CDS | 40.0% |
| GTGGTCATGGAGTTTACAGT+AGG | - | chr1_3:34526798-34526817 | Msa0115620:CDS | 45.0% | |
| !!! | ACCTGGTCGTATTTTTCGAG+CGG | - | chr1_3:34526993-34527012 | Msa0115620:CDS | 45.0% |
| ! | TGAGTTTTCTGTCTTGTGGC+TGG | - | chr1_3:34527128-34527147 | Msa0115620:CDS | 45.0% |
| ! | GAGCTTCTGCTACTTATGTG+AGG | - | chr1_3:34527200-34527219 | Msa0115620:intron | 45.0% |
| ! | GCCTTCAAGCTTTGATATGG+TGG | + | chr1_3:34527434-34527453 | None:intergenic | 45.0% |
| GGCTTAGCCAACTCTATAGA+AGG | - | chr1_3:34527451-34527470 | Msa0115620:intron | 45.0% | |
| TGGCAGCTTCTTGAGTATCT+TGG | + | chr1_3:34527814-34527833 | None:intergenic | 45.0% | |
| GATACTCAAGAAGCTGCCAT+AGG | - | chr1_3:34527815-34527834 | Msa0115620:intron | 45.0% | |
| ATTGTTGCCATGGGATCCTA+TGG | + | chr1_3:34527834-34527853 | None:intergenic | 45.0% | |
| CATCTCATCATTGAGCTCCA+AGG | - | chr1_3:34528356-34528375 | Msa0115620:intron | 45.0% | |
| TATGGCTCATGAAGACACCA+AGG | - | chr1_3:34528626-34528645 | Msa0115620:intron | 45.0% | |
| ! | TATAGATCGCGGATTGACCT+TGG | + | chr1_3:34528646-34528665 | None:intergenic | 45.0% |
| AGGTTATGGCCAACAGCATA+AGG | - | chr1_3:34528713-34528732 | Msa0115620:intron | 45.0% | |
| ACGCTTGTTCCTTATGCTGT+TGG | + | chr1_3:34528725-34528744 | None:intergenic | 45.0% | |
| !!! | TGGGAGTTTTGGGGGTTATA+GGG | + | chr1_3:34528864-34528883 | None:intergenic | 45.0% |
| CTTGAAAAAGTTGGGCGTTC+TGG | + | chr1_3:34528884-34528903 | None:intergenic | 45.0% | |
| !! | TCTTTCGATTTGGTTCCGAC+CGG | + | chr1_3:34528961-34528980 | None:intergenic | 45.0% |
| AGAAGGGCAAGGACAGAAAA+AGG | - | chr1_3:34529002-34529021 | Msa0115620:intron | 45.0% | |
| ! | GTAGTGCTTCTGAGAACTCA+AGG | + | chr1_3:34529077-34529096 | None:intergenic | 45.0% |
| CACTTCTTTGCTTGTGGAGA+TGG | - | chr1_3:34529110-34529129 | Msa0115620:CDS | 45.0% | |
| TTCTTTGCTTGTGGAGATGG+TGG | - | chr1_3:34529113-34529132 | Msa0115620:CDS | 45.0% | |
| TACTCTGCTCCTCCATAAGA+AGG | + | chr1_3:34529273-34529292 | None:intergenic | 45.0% | |
| TGTTGTGGCTGTCATGACTG+TGG | - | chr1_3:34526773-34526792 | Msa0115620:CDS | 50.0% | |
| CATGACTGTGGTTGTGGTCA+TGG | - | chr1_3:34526785-34526804 | Msa0115620:CDS | 50.0% | |
| GGATTAGGAACTCTGTCAGC+AGG | - | chr1_3:34526934-34526953 | Msa0115620:CDS | 50.0% | |
| GAGTATCTTGGAGATGCACC+TGG | - | chr1_3:34526976-34526995 | Msa0115620:CDS | 50.0% | |
| ACCGCTCGAAAAATACGACC+AGG | + | chr1_3:34526997-34527016 | None:intergenic | 50.0% | |
| CGCGTCTCTACCATATGCAT+CGG | - | chr1_3:34527340-34527359 | Msa0115620:intron | 50.0% | |
| AGGTCTTCTCCTGACCAGTT+TGG | + | chr1_3:34527403-34527422 | None:intergenic | 50.0% | |
| TACACTGTCGTAGCACTGCA+TGG | - | chr1_3:34527889-34527908 | Msa0115620:intron | 50.0% | |
| ACACTGTCGTAGCACTGCAT+GGG | - | chr1_3:34527890-34527909 | Msa0115620:intron | 50.0% | |
| ! | TCGCAACCGCAGCTTTTACT+AGG | - | chr1_3:34528814-34528833 | Msa0115620:CDS | 50.0% |
| CTCGAGCCTAGTAAAAGCTG+CGG | + | chr1_3:34528823-34528842 | None:intergenic | 50.0% | |
| !!! | CTGGGAGTTTTGGGGGTTAT+AGG | + | chr1_3:34528865-34528884 | None:intergenic | 50.0% |
| !!! | TTGGGCGTTCTGGGAGTTTT+GGG | + | chr1_3:34528874-34528893 | None:intergenic | 50.0% |
| !! | CCAAATCGAAAGAGCACTCC+CGG | - | chr1_3:34528968-34528987 | Msa0115620:intron | 50.0% |
| !! | CAAATCGAAAGAGCACTCCC+GGG | - | chr1_3:34528969-34528988 | Msa0115620:intron | 50.0% |
| GGCTGTCATGACTGTGGTTG+TGG | - | chr1_3:34526779-34526798 | Msa0115620:CDS | 55.0% | |
| GCAGGGGGAACCTTATGCAA+AGG | - | chr1_3:34526901-34526920 | Msa0115620:CDS | 55.0% | |
| GAAGCTGCCATAGGATCCCA+TGG | - | chr1_3:34527824-34527843 | Msa0115620:intron | 55.0% | |
| !!! | TGGGCGTTCTGGGAGTTTTG+GGG | + | chr1_3:34528873-34528892 | None:intergenic | 55.0% |
| !!! | GTTGGGCGTTCTGGGAGTTT+TGG | + | chr1_3:34528875-34528894 | None:intergenic | 55.0% |
| !! | CCGGGAGTGCTCTTTCGATT+TGG | + | chr1_3:34528971-34528990 | None:intergenic | 55.0% |
| !!! | GGGCGTTCTGGGAGTTTTGG+GGG | + | chr1_3:34528872-34528891 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 34526543 | 34529293 | 34526543 | ID=Msa0115620;Name=Msa0115620 |
| chr1_3 | mRNA | 34526543 | 34529293 | 34526543 | ID=Msa0115620-mRNA-1;Parent=Msa0115620;Name=Msa0115620-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|6|0|536 |
| chr1_3 | exon | 34529017 | 34529293 | 34529017 | ID=Msa0115620-mRNA-1:exon:10915;Parent=Msa0115620-mRNA-1 |
| chr1_3 | exon | 34528791 | 34528931 | 34528791 | ID=Msa0115620-mRNA-1:exon:10914;Parent=Msa0115620-mRNA-1 |
| chr1_3 | exon | 34528364 | 34528636 | 34528364 | ID=Msa0115620-mRNA-1:exon:10913;Parent=Msa0115620-mRNA-1 |
| chr1_3 | exon | 34528135 | 34528256 | 34528135 | ID=Msa0115620-mRNA-1:exon:10912;Parent=Msa0115620-mRNA-1 |
| chr1_3 | exon | 34527903 | 34528046 | 34527903 | ID=Msa0115620-mRNA-1:exon:10911;Parent=Msa0115620-mRNA-1 |
| chr1_3 | exon | 34526543 | 34527196 | 34526543 | ID=Msa0115620-mRNA-1:exon:10910;Parent=Msa0115620-mRNA-1 |
| chr1_3 | CDS | 34529017 | 34529293 | 34529017 | ID=Msa0115620-mRNA-1:cds;Parent=Msa0115620-mRNA-1 |
| chr1_3 | CDS | 34528791 | 34528931 | 34528791 | ID=Msa0115620-mRNA-1:cds;Parent=Msa0115620-mRNA-1 |
| chr1_3 | CDS | 34528364 | 34528636 | 34528364 | ID=Msa0115620-mRNA-1:cds;Parent=Msa0115620-mRNA-1 |
| chr1_3 | CDS | 34528135 | 34528256 | 34528135 | ID=Msa0115620-mRNA-1:cds;Parent=Msa0115620-mRNA-1 |
| chr1_3 | CDS | 34527903 | 34528046 | 34527903 | ID=Msa0115620-mRNA-1:cds;Parent=Msa0115620-mRNA-1 |
| chr1_3 | CDS | 34526543 | 34527196 | 34526543 | ID=Msa0115620-mRNA-1:cds;Parent=Msa0115620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
