Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909810 | XP_013470405.1 | 97.952 | 537 | 10 | 1 | 1 | 536 | 1 | 537 | 0.0 | 1089 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909810 | sp|O49696|ALMTC_ARATH | 53.005 | 549 | 209 | 8 | 22 | 536 | 27 | 560 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037280 | Msa0909810 | 0.819274 | 1.265858e-52 | -8.615850e-47 |
| Msa0045310 | Msa0909810 | 0.987954 | 3.699550e-172 | -8.615850e-47 |
| Msa0085450 | Msa0909810 | 0.800809 | 1.210734e-48 | -8.615850e-47 |
| Msa0087550 | Msa0909810 | 0.802876 | 4.556340e-49 | -8.615850e-47 |
| Msa0115620 | Msa0909810 | 0.859980 | 2.840944e-63 | -8.615850e-47 |
| Msa0657340 | Msa0909810 | 0.803701 | 3.074307e-49 | -8.615850e-47 |
| Msa0129640 | Msa0909810 | 0.829008 | 6.544488e-55 | -8.615850e-47 |
| Msa0178000 | Msa0909810 | 0.830291 | 3.189133e-55 | -8.615850e-47 |
| Msa0386890 | Msa0909810 | 0.815309 | 9.877374e-52 | -8.615850e-47 |
| Msa0458220 | Msa0909810 | 0.815823 | 7.586150e-52 | -8.615850e-47 |
| Msa0504700 | Msa0909810 | 0.812585 | 3.936479e-51 | -8.615850e-47 |
| Msa0524260 | Msa0909810 | 0.829976 | 3.806916e-55 | -8.615850e-47 |
| Msa0524370 | Msa0909810 | 0.815160 | 1.065867e-51 | -8.615850e-47 |
| Msa0873910 | Msa0909810 | 0.836827 | 7.446365e-57 | -8.615850e-47 |
| Msa0906680 | Msa0909810 | 0.802869 | 4.570525e-49 | -8.615850e-47 |
| Msa0909810 | Msa0975950 | 0.806227 | 9.112864e-50 | -8.615850e-47 |
| Msa0909810 | Msa0975960 | 0.842764 | 2.118845e-58 | -8.615850e-47 |
| Msa0909810 | Msa1364970 | 0.812000 | 5.282685e-51 | -8.615850e-47 |
| Msa0909810 | Msa1367460 | 0.824094 | 9.723918e-54 | -8.615850e-47 |
| Msa0909810 | Msa1368400 | 0.814521 | 1.476510e-51 | -8.615850e-47 |
| Msa0909810 | Msa1411370 | 0.837775 | 4.259792e-57 | -8.615850e-47 |
| Msa0909810 | Msa1412410 | 0.836396 | 9.588482e-57 | -8.615850e-47 |
| Msa0909810 | Msa1417600 | 0.806396 | 8.395702e-50 | -8.615850e-47 |
| Msa0909810 | Msa1427860 | 0.833309 | 5.743809e-56 | -8.615850e-47 |
| Msa0909810 | Msa1435550 | 0.803538 | 3.323596e-49 | -8.615850e-47 |
| Msa0909810 | Msa1439860 | 0.832743 | 7.941583e-56 | -8.615850e-47 |
| Msa0909810 | Msa1454360 | 0.964971 | 5.290919e-124 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909810 | MtrunA17_Chr1g0212291 | 97.952 | 537 | 10 | 1 | 1 | 536 | 1 | 537 | 0.0 | 1089 |
| Msa0909810 | MtrunA17_Chr1g0212201 | 80.863 | 533 | 96 | 2 | 4 | 534 | 7 | 535 | 0.0 | 904 |
| Msa0909810 | MtrunA17_Chr1g0212251 | 81.308 | 535 | 90 | 5 | 4 | 534 | 3 | 531 | 0.0 | 897 |
| Msa0909810 | MtrunA17_Chr4g0054741 | 59.665 | 538 | 198 | 6 | 1 | 534 | 11 | 533 | 0.0 | 604 |
| Msa0909810 | MtrunA17_Chr5g0400471 | 55.983 | 468 | 171 | 6 | 94 | 533 | 3 | 463 | 3.19e-168 | 484 |
| Msa0909810 | MtrunA17_Chr4g0054771 | 56.675 | 397 | 156 | 4 | 140 | 534 | 3 | 385 | 1.53e-147 | 429 |
| Msa0909810 | MtrunA17_Chr1g0188871 | 40.933 | 386 | 217 | 5 | 11 | 395 | 23 | 398 | 5.12e-97 | 302 |
| Msa0909810 | MtrunA17_Chr1g0188881 | 41.860 | 344 | 192 | 4 | 37 | 378 | 51 | 388 | 3.14e-93 | 293 |
| Msa0909810 | MtrunA17_Chr4g0025591 | 40.449 | 356 | 201 | 3 | 23 | 370 | 19 | 371 | 1.23e-85 | 273 |
| Msa0909810 | MtrunA17_Chr7g0267471 | 43.944 | 355 | 190 | 3 | 1 | 351 | 1 | 350 | 5.10e-84 | 269 |
| Msa0909810 | MtrunA17_Chr8g0390931 | 32.094 | 511 | 303 | 11 | 25 | 505 | 47 | 543 | 5.69e-79 | 258 |
| Msa0909810 | MtrunA17_Chr6g0484691 | 33.650 | 526 | 307 | 13 | 15 | 505 | 58 | 576 | 8.84e-79 | 258 |
| Msa0909810 | MtrunA17_Chr2g0321971 | 42.587 | 317 | 174 | 3 | 38 | 351 | 37 | 348 | 1.14e-78 | 254 |
| Msa0909810 | MtrunA17_Chr7g0259731 | 38.486 | 317 | 185 | 4 | 43 | 355 | 61 | 371 | 8.57e-75 | 243 |
| Msa0909810 | MtrunA17_Chr8g0390921 | 31.335 | 517 | 311 | 11 | 24 | 505 | 46 | 553 | 3.12e-72 | 241 |
| Msa0909810 | MtrunA17_Chr1g0210101 | 32.172 | 488 | 297 | 11 | 36 | 505 | 111 | 582 | 5.15e-71 | 238 |
| Msa0909810 | MtrunA17_Chr2g0321961 | 37.838 | 370 | 219 | 6 | 17 | 380 | 13 | 377 | 1.87e-69 | 229 |
| Msa0909810 | MtrunA17_Chr8g0390901 | 29.797 | 443 | 276 | 10 | 92 | 505 | 9 | 445 | 1.38e-59 | 204 |
| Msa0909810 | MtrunA17_Chr4g0054761 | 58.741 | 143 | 58 | 1 | 1 | 142 | 11 | 153 | 5.53e-36 | 131 |
| Msa0909810 | MtrunA17_Chr5g0400481 | 51.579 | 95 | 46 | 0 | 2 | 96 | 21 | 115 | 6.06e-27 | 105 |
| Msa0909810 | MtrunA17_Chr1g0209601 | 77.551 | 49 | 10 | 1 | 11 | 59 | 5 | 52 | 4.38e-18 | 78.2 |
| Msa0909810 | MtrunA17_Chr8g0390911 | 45.070 | 71 | 38 | 1 | 24 | 93 | 50 | 120 | 2.59e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909810 | AT4G17970.1 | 53.005 | 549 | 209 | 8 | 22 | 536 | 27 | 560 | 0.0 | 564 |
| Msa0909810 | AT5G46610.1 | 55.212 | 518 | 205 | 8 | 24 | 520 | 24 | 535 | 0.0 | 550 |
| Msa0909810 | AT5G46600.1 | 53.535 | 495 | 206 | 5 | 32 | 506 | 36 | 526 | 7.19e-179 | 514 |
| Msa0909810 | AT5G46610.2 | 51.351 | 518 | 201 | 9 | 24 | 520 | 24 | 511 | 8.74e-172 | 496 |
| Msa0909810 | AT5G46610.3 | 48.842 | 518 | 191 | 9 | 24 | 520 | 24 | 488 | 3.15e-156 | 455 |
| Msa0909810 | AT4G00910.1 | 35.232 | 474 | 245 | 6 | 34 | 505 | 54 | 467 | 4.92e-98 | 306 |
| Msa0909810 | AT1G08440.1 | 40.698 | 344 | 199 | 2 | 38 | 378 | 13 | 354 | 6.96e-80 | 259 |
| Msa0909810 | AT3G18440.1 | 31.621 | 506 | 305 | 10 | 32 | 505 | 73 | 569 | 1.53e-76 | 253 |
| Msa0909810 | AT3G11680.2 | 38.947 | 380 | 225 | 3 | 1 | 378 | 1 | 375 | 5.75e-76 | 248 |
| Msa0909810 | AT3G11680.1 | 38.992 | 377 | 223 | 3 | 4 | 378 | 2 | 373 | 4.16e-75 | 246 |
| Msa0909810 | AT1G18420.1 | 30.826 | 545 | 317 | 15 | 6 | 505 | 48 | 577 | 3.75e-73 | 243 |
| Msa0909810 | AT1G08430.1 | 38.329 | 347 | 206 | 3 | 38 | 378 | 13 | 357 | 6.91e-72 | 238 |
| Msa0909810 | AT2G27240.2 | 38.617 | 347 | 202 | 4 | 38 | 378 | 13 | 354 | 3.75e-70 | 233 |
| Msa0909810 | AT1G18420.2 | 30.830 | 506 | 299 | 13 | 39 | 505 | 1 | 494 | 2.12e-69 | 231 |
| Msa0909810 | AT2G27240.1 | 36.957 | 368 | 205 | 4 | 38 | 378 | 13 | 380 | 3.19e-68 | 228 |
| Msa0909810 | AT1G25480.1 | 30.980 | 510 | 318 | 12 | 15 | 505 | 47 | 541 | 4.28e-68 | 229 |
| Msa0909810 | AT2G17470.1 | 30.801 | 487 | 310 | 11 | 38 | 505 | 31 | 509 | 3.44e-67 | 226 |
| Msa0909810 | AT2G17470.2 | 30.801 | 487 | 310 | 11 | 38 | 505 | 53 | 531 | 3.91e-67 | 227 |
| Msa0909810 | AT1G68600.1 | 29.828 | 523 | 334 | 14 | 4 | 508 | 25 | 532 | 2.41e-64 | 219 |
| Msa0909810 | AT4G17585.1 | 58.571 | 70 | 24 | 2 | 22 | 90 | 27 | 92 | 1.68e-19 | 85.9 |
Find 89 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGGCGTTCTGGGAGTTT+TGG | 0.203211 | 6_2:+12889011 | None:intergenic |
| GTTTAGTGAAAAGGACAATT+TGG | 0.226534 | 6_2:-12891260 | Msa0909810:CDS |
| AACAGGCAATGCAAGCTAAT+TGG | 0.239706 | 6_2:-12890100 | Msa0909810:intron |
| TCATAATTCTTCTTTATATA+AGG | 0.249336 | 6_2:+12890656 | None:intergenic |
| CAATCTCAACGAAGCTTTAC+AGG | 0.257338 | 6_2:-12889112 | Msa0909810:CDS |
| TGTTTCATTGTTGTATCTAA+TGG | 0.262149 | 6_2:-12891172 | Msa0909810:CDS |
| GTGAATGACTTGCCTTCTTA+TGG | 0.265915 | 6_2:-12888625 | Msa0909810:CDS |
| AACTCTGTCAGCAGGATTAT+TGG | 0.276589 | 6_2:-12890943 | Msa0909810:CDS |
| CACTTCTTTGCTTGTGGAGA+TGG | 0.301215 | 6_2:-12888773 | Msa0909810:CDS |
| TGATACAATCATCAAATTAA+AGG | 0.304569 | 6_2:+12890607 | None:intergenic |
| ACCAGTTTGGAAATACAAAT+AGG | 0.312997 | 6_2:+12890498 | None:intergenic |
| GCTTCGTAGCACTTGTAAAT+AGG | 0.321095 | 6_2:+12890240 | None:intergenic |
| CCGGGAGTGCTCTTTCGATT+TGG | 0.334816 | 6_2:+12888915 | None:intergenic |
| CCCTATTTGTATTTCCAAAC+TGG | 0.338641 | 6_2:-12890499 | Msa0909810:CDS |
| AGAAGGGCAAGGACAGAAAA+AGG | 0.350270 | 6_2:-12888881 | Msa0909810:CDS |
| TGGCAGCTTCTTGAGTATCT+TGG | 0.350454 | 6_2:+12890074 | None:intergenic |
| TATGGATAATGTTGAAGAAT+TGG | 0.350765 | 6_2:-12888731 | Msa0909810:CDS |
| GTGTCTTCAGTCTGAAATTC+AGG | 0.356254 | 6_2:-12889973 | Msa0909810:intron |
| GATAAAGTGAAAAGATTTCC+AGG | 0.363299 | 6_2:-12891282 | Msa0909810:CDS |
| TAAGCCTTCAAGCTTTGATA+TGG | 0.366629 | 6_2:+12890451 | None:intergenic |
| AAAGGACTTAATAGAGGATT+AGG | 0.369561 | 6_2:-12890966 | Msa0909810:CDS |
| ATCAAAAGTACTAAAGGTTA+TGG | 0.379933 | 6_2:-12889184 | Msa0909810:CDS |
| TCTATTAAGTCCTTTGCATA+AGG | 0.384312 | 6_2:+12890974 | None:intergenic |
| AAAAGGACAATTTGGAAAGT+TGG | 0.395542 | 6_2:-12891252 | Msa0909810:CDS |
| ATGGATAATGTTGAAGAATT+GGG | 0.407626 | 6_2:-12888730 | Msa0909810:CDS |
| AGGTCTTCTCCTGACCAGTT+TGG | 0.409971 | 6_2:+12890485 | None:intergenic |
| CCAGTTTGGAAATACAAATA+GGG | 0.412732 | 6_2:+12890499 | None:intergenic |
| ATAAAGAAGAATTATGACTA+TGG | 0.417510 | 6_2:-12890650 | Msa0909810:CDS |
| GATTTCCAGGTTTAGTGAAA+AGG | 0.418815 | 6_2:-12891269 | Msa0909810:CDS |
| ACAGGCAATGCAAGCTAATT+GGG | 0.419732 | 6_2:-12890099 | Msa0909810:intron |
| CTTTCGATTTGGTTCCGACC+GGG | 0.421203 | 6_2:+12888926 | None:intergenic |
| TTTGTATTTCCAAACTGGTC+AGG | 0.429187 | 6_2:-12890494 | Msa0909810:CDS |
| GGCTTAGCCAACTCTATAGA+AGG | 0.433695 | 6_2:-12890434 | Msa0909810:intron |
| CATGACTGTGGTTGTGGTCA+TGG | 0.437773 | 6_2:-12891106 | Msa0909810:CDS |
| GTGGTTCATTCATTGAAAGT+TGG | 0.442918 | 6_2:-12891210 | Msa0909810:CDS |
| TGCTTTCACTTCTTTGCTTG+TGG | 0.442934 | 6_2:-12888779 | Msa0909810:CDS |
| CCAAATCGAAAGAGCACTCC+CGG | 0.448551 | 6_2:-12888915 | Msa0909810:CDS |
| TAATGGAACCATTGTACAAA+GGG | 0.453257 | 6_2:-12891155 | Msa0909810:CDS |
| GGCTGTCATGACTGTGGTTG+TGG | 0.457254 | 6_2:-12891112 | Msa0909810:CDS |
| ACGCTTGTTCCTTATGCTGT+TGG | 0.462988 | 6_2:+12889161 | None:intergenic |
| GGCAAAACTAGATCATGTTA+TGG | 0.464191 | 6_2:-12888749 | Msa0909810:CDS |
| TTGATATGGTGGATTTATGA+AGG | 0.464739 | 6_2:+12890465 | None:intergenic |
| TCCACCATATCAAAGCTTGA+AGG | 0.473767 | 6_2:-12890455 | Msa0909810:CDS |
| AGGTTATGGCCAACAGCATA+AGG | 0.474290 | 6_2:-12889170 | Msa0909810:CDS |
| GCCTTCAAGCTTTGATATGG+TGG | 0.475091 | 6_2:+12890454 | None:intergenic |
| TTATGCAAAGGACTTAATAG+AGG | 0.486073 | 6_2:-12890972 | Msa0909810:CDS |
| TTCTTTGCTTGTGGAGATGG+TGG | 0.486494 | 6_2:-12888770 | Msa0909810:CDS |
| ATTGTTGCCATGGGATCCTA+TGG | 0.488776 | 6_2:+12890054 | None:intergenic |
| AGAAGTATCAAAAGTACTAA+AGG | 0.492579 | 6_2:-12889190 | Msa0909810:CDS |
| TTTCCTATCCCTTTGTACAA+TGG | 0.496607 | 6_2:+12891147 | None:intergenic |
| AATAGCAACACCGATGCATA+TGG | 0.504570 | 6_2:+12890535 | None:intergenic |
| TCCCGGGAACTAACAAAAGA+AGG | 0.508227 | 6_2:-12888898 | Msa0909810:CDS |
| AAAGAAGTGAAAGCAGCAAA+AGG | 0.520550 | 6_2:+12888787 | None:intergenic |
| GATTGTTCGAGAGTGTTTCA+AGG | 0.521322 | 6_2:+12889130 | None:intergenic |
| TATAGATCGCGGATTGACCT+TGG | 0.524660 | 6_2:+12889240 | None:intergenic |
| GGATTAGGAACTCTGTCAGC+AGG | 0.527709 | 6_2:-12890951 | Msa0909810:CDS |
| GTGGTCATGGAGTTTACAGT+AGG | 0.539836 | 6_2:-12891093 | Msa0909810:intron |
| GAACCATTGTACAAAGGGAT+AGG | 0.540699 | 6_2:-12891150 | Msa0909810:CDS |
| TACTCTGCTCCTCCATAAGA+AGG | 0.541093 | 6_2:+12888613 | None:intergenic |
| TACACTGTCGTAGCACTGCA+TGG | 0.544060 | 6_2:-12889996 | Msa0909810:CDS |
| CAAAGATGATCCAAGAAAAG+TGG | 0.544252 | 6_2:-12891229 | Msa0909810:CDS |
| GTCATAGTCTTACTCAGTTG+TGG | 0.547431 | 6_2:+12888850 | None:intergenic |
| CACTTTAGAGAGTTCAGAGA+TGG | 0.548017 | 6_2:-12888697 | Msa0909810:CDS |
| TAAAAGTGATTATTGTTCCC+CGG | 0.551200 | 6_2:-12888944 | Msa0909810:CDS |
| ATTGTTCGAGAGTGTTTCAA+GGG | 0.555202 | 6_2:+12889131 | None:intergenic |
| TCTTTCGATTTGGTTCCGAC+CGG | 0.560225 | 6_2:+12888925 | None:intergenic |
| TTTCGATTTGGTTCCGACCG+GGG | 0.564436 | 6_2:+12888927 | None:intergenic |
| GTAGTGCTTCTGAGAACTCA+AGG | 0.566975 | 6_2:+12888809 | None:intergenic |
| AATGACTTGCCTTCTTATGG+AGG | 0.579796 | 6_2:-12888622 | Msa0909810:CDS |
| GCACTTGTAAATAGGATCCT+CGG | 0.579858 | 6_2:+12890248 | None:intergenic |
| AGTGATTATTGTTCCCCGGT+CGG | 0.585253 | 6_2:-12888940 | Msa0909810:CDS |
| GAGTATCTTGGAGATGCACC+TGG | 0.590500 | 6_2:-12890909 | Msa0909810:CDS |
| GAGCTTCTGCTACTTATGTG+AGG | 0.592460 | 6_2:-12890685 | Msa0909810:CDS |
| CGCGTCTCTACCATATGCAT+CGG | 0.595667 | 6_2:-12890545 | Msa0909810:CDS |
| CTAATGGAACCATTGTACAA+AGG | 0.603339 | 6_2:-12891156 | Msa0909810:CDS |
| GATACTCAAGAAGCTGCCAT+AGG | 0.605358 | 6_2:-12890070 | Msa0909810:CDS |
| TAATGATGCAGTTACTGTTG+TGG | 0.607091 | 6_2:-12890316 | Msa0909810:intron |
| CCCGGGAACTAACAAAAGAA+GGG | 0.610231 | 6_2:-12888897 | Msa0909810:CDS |
| ACACTGTCGTAGCACTGCAT+GGG | 0.611183 | 6_2:-12889995 | Msa0909810:CDS |
| GAAGCTGCCATAGGATCCCA+TGG | 0.613495 | 6_2:-12890061 | Msa0909810:CDS |
| GAACTAACAAAAGAAGGGCA+AGG | 0.617174 | 6_2:-12888892 | Msa0909810:CDS |
| TGGCAACAATATGCAAAAGT+CGG | 0.625675 | 6_2:-12890041 | Msa0909810:CDS |
| CAAATCGAAAGAGCACTCCC+GGG | 0.635370 | 6_2:-12888914 | Msa0909810:CDS |
| AAGAATCTTTGTATAGATCG+CGG | 0.642132 | 6_2:+12889229 | None:intergenic |
| CTCGAGCCTAGTAAAAGCTG+CGG | 0.662648 | 6_2:+12889063 | None:intergenic |
| TGTTGTGGCTGTCATGACTG+TGG | 0.668854 | 6_2:-12891118 | Msa0909810:CDS |
| AAATGAAGATGATTCATCCG+AGG | 0.672197 | 6_2:-12890265 | Msa0909810:CDS |
| AGCTCAAAATATTATCTACG+CGG | 0.698557 | 6_2:+12890579 | None:intergenic |
| TATGGCTCATGAAGACACCA+AGG | 0.726749 | 6_2:-12889257 | Msa0909810:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAATTCTTCTTTATATA+AGG | + | chr6_2:12889307-12889326 | None:intergenic | 15.0% |
| !!! | TATTATTTTCTTCAACAAAA+GGG | + | chr6_2:12889795-12889814 | None:intergenic | 15.0% |
| !!! | ATATTATTTTCTTCAACAAA+AGG | + | chr6_2:12889796-12889815 | None:intergenic | 15.0% |
| !! | AGAAAATAATATCATGAAAT+TGG | - | chr6_2:12889804-12889823 | Msa0909810:intron | 15.0% |
| !!! | TGTTATATTAAAGATTTTGA+GGG | + | chr6_2:12890173-12890192 | None:intergenic | 15.0% |
| !! | TACACATTTCATTATTAAAT+TGG | - | chr6_2:12890599-12890618 | Msa0909810:CDS | 15.0% |
| !! | ATAAAGAAGAATTATGACTA+TGG | - | chr6_2:12889310-12889329 | Msa0909810:intron | 20.0% |
| !! | TGATACAATCATCAAATTAA+AGG | + | chr6_2:12889356-12889375 | None:intergenic | 20.0% |
| !!! | TAATGATGAAAAAGCTTTTA+TGG | - | chr6_2:12889585-12889604 | Msa0909810:intron | 20.0% |
| !!! | AGGTACTAAATTATCTATTT+TGG | - | chr6_2:12890007-12890026 | Msa0909810:CDS | 20.0% |
| !!! | TTACTAGAAAAGTTTCTTTT+GGG | + | chr6_2:12890069-12890088 | None:intergenic | 20.0% |
| !!! | GCTTTTTATTTAGATTTTTG+AGG | + | chr6_2:12890143-12890162 | None:intergenic | 20.0% |
| !!! | GTGTTATATTAAAGATTTTG+AGG | + | chr6_2:12890174-12890193 | None:intergenic | 20.0% |
| !!! | TGAGCTTTTTTTAGTATTGT+TGG | + | chr6_2:12888628-12888647 | None:intergenic | 25.0% |
| ! | TGTTTCATTGTTGTATCTAA+TGG | - | chr6_2:12888788-12888807 | Msa0909810:CDS | 25.0% |
| ! | AATCATAATCAATACGTATG+AGG | + | chr6_2:12888956-12888975 | None:intergenic | 25.0% |
| !!! | GCATTTTTAATTGAGTATCT+TGG | - | chr6_2:12889039-12889058 | Msa0909810:CDS | 25.0% |
| ! | AATGGTTAAGCAAAACATTA+GGG | + | chr6_2:12889234-12889253 | None:intergenic | 25.0% |
| !! | TATTTTACCTTCTATAGAGT+TGG | + | chr6_2:12889536-12889555 | None:intergenic | 25.0% |
| ! | GTATCAATCTATATAACTGA+TGG | - | chr6_2:12889615-12889634 | Msa0909810:intron | 25.0% |
| ! | CTTATCATATAGAATTGAAC+AGG | - | chr6_2:12889843-12889862 | Msa0909810:intron | 25.0% |
| !! | GTTACTAGAAAAGTTTCTTT+TGG | + | chr6_2:12890070-12890089 | None:intergenic | 25.0% |
| !!! | TTTTCTAGTAACTAGAGAAT+GGG | - | chr6_2:12890078-12890097 | Msa0909810:CDS | 25.0% |
| ! | TCAGAAAAATTGCTTTAACA+TGG | - | chr6_2:12890388-12890407 | Msa0909810:intron | 25.0% |
| ! | GTTATGTTATTGATATCACA+TGG | - | chr6_2:12890470-12890489 | Msa0909810:CDS | 25.0% |
| !! | TCATTGATTATTATGTAGCT+AGG | - | chr6_2:12890516-12890535 | Msa0909810:CDS | 25.0% |
| ! | CGATATATGCATTTAACATA+TGG | - | chr6_2:12890685-12890704 | Msa0909810:CDS | 25.0% |
| !!! | AGAAGTATCAAAAGTACTAA+AGG | - | chr6_2:12890770-12890789 | Msa0909810:intron | 25.0% |
| !!! | ATCAAAAGTACTAAAGGTTA+TGG | - | chr6_2:12890776-12890795 | Msa0909810:intron | 25.0% |
| ! | TCATCAATCTTGAAAAAGTT+GGG | + | chr6_2:12890969-12890988 | None:intergenic | 25.0% |
| ! | TTCATCAATCTTGAAAAAGT+TGG | + | chr6_2:12890970-12890989 | None:intergenic | 25.0% |
| ! | TATGGATAATGTTGAAGAAT+TGG | - | chr6_2:12891229-12891248 | Msa0909810:CDS | 25.0% |
| ! | ATGGATAATGTTGAAGAATT+GGG | - | chr6_2:12891230-12891249 | Msa0909810:CDS | 25.0% |
| CTAAAAAAAGCTCAAGCTAT+TGG | - | chr6_2:12888634-12888653 | Msa0909810:CDS | 30.0% | |
| GATAAAGTGAAAAGATTTCC+AGG | - | chr6_2:12888678-12888697 | Msa0909810:CDS | 30.0% | |
| GTTTAGTGAAAAGGACAATT+TGG | - | chr6_2:12888700-12888719 | Msa0909810:CDS | 30.0% | |
| AAAAGGACAATTTGGAAAGT+TGG | - | chr6_2:12888708-12888727 | Msa0909810:CDS | 30.0% | |
| !! | AATGAATGAACCACTTTTCT+TGG | + | chr6_2:12888744-12888763 | None:intergenic | 30.0% |
| TAATGGAACCATTGTACAAA+GGG | - | chr6_2:12888805-12888824 | Msa0909810:CDS | 30.0% | |
| !! | TACGTATTGATTATGATTGC+AGG | - | chr6_2:12888958-12888977 | Msa0909810:CDS | 30.0% |
| !! | ACGTATTGATTATGATTGCA+GGG | - | chr6_2:12888959-12888978 | Msa0909810:CDS | 30.0% |
| TCTATTAAGTCCTTTGCATA+AGG | + | chr6_2:12888989-12889008 | None:intergenic | 30.0% | |
| TTATGCAAAGGACTTAATAG+AGG | - | chr6_2:12888988-12889007 | Msa0909810:CDS | 30.0% | |
| AAAGGACTTAATAGAGGATT+AGG | - | chr6_2:12888994-12889013 | Msa0909810:CDS | 30.0% | |
| CAATGGTTAAGCAAAACATT+AGG | + | chr6_2:12889235-12889254 | None:intergenic | 30.0% | |
| ! | CTAATGTTTTGCTTAACCAT+TGG | - | chr6_2:12889233-12889252 | Msa0909810:CDS | 30.0% |
| AGCTCAAAATATTATCTACG+CGG | + | chr6_2:12889384-12889403 | None:intergenic | 30.0% | |
| !! | CGTAGATAATATTTTGAGCT+TGG | - | chr6_2:12889384-12889403 | Msa0909810:intron | 30.0% |
| CCAGTTTGGAAATACAAATA+GGG | + | chr6_2:12889464-12889483 | None:intergenic | 30.0% | |
| ACCAGTTTGGAAATACAAAT+AGG | + | chr6_2:12889465-12889484 | None:intergenic | 30.0% | |
| !! | TTGATATGGTGGATTTATGA+AGG | + | chr6_2:12889498-12889517 | None:intergenic | 30.0% |
| !!! | TGTTTTAGACTCTAAAGCTA+AGG | - | chr6_2:12889743-12889762 | Msa0909810:intron | 30.0% |
| !! | CTTTTCTAGTAACTAGAGAA+TGG | - | chr6_2:12890077-12890096 | Msa0909810:CDS | 30.0% |
| ATAACTAGCTAGAGATATAG+TGG | + | chr6_2:12890350-12890369 | None:intergenic | 30.0% | |
| CAATAACATAACAGATTGAC+AGG | + | chr6_2:12890462-12890481 | None:intergenic | 30.0% | |
| !! | GCTATTGACTTCTCAATTAT+TGG | - | chr6_2:12890621-12890640 | Msa0909810:CDS | 30.0% |
| AAGAATCTTTGTATAGATCG+CGG | + | chr6_2:12890734-12890753 | None:intergenic | 30.0% | |
| TAAAAGTGATTATTGTTCCC+CGG | - | chr6_2:12891016-12891035 | Msa0909810:intron | 30.0% | |
| ! | TTCACAGCTGTATTCATTTT+TGG | + | chr6_2:12891320-12891339 | None:intergenic | 30.0% |
| GATTTCCAGGTTTAGTGAAA+AGG | - | chr6_2:12888691-12888710 | Msa0909810:CDS | 35.0% | |
| ! | ATTGTCCTTTTCACTAAACC+TGG | + | chr6_2:12888699-12888718 | None:intergenic | 35.0% |
| CAAAGATGATCCAAGAAAAG+TGG | - | chr6_2:12888731-12888750 | Msa0909810:CDS | 35.0% | |
| GTGGTTCATTCATTGAAAGT+TGG | - | chr6_2:12888750-12888769 | Msa0909810:CDS | 35.0% | |
| CTAATGGAACCATTGTACAA+AGG | - | chr6_2:12888804-12888823 | Msa0909810:CDS | 35.0% | |
| TTTCCTATCCCTTTGTACAA+TGG | + | chr6_2:12888816-12888835 | None:intergenic | 35.0% | |
| GATAGGAAAAAATGCTGTTG+TGG | - | chr6_2:12888827-12888846 | Msa0909810:CDS | 35.0% | |
| !! | CGTATTGATTATGATTGCAG+GGG | - | chr6_2:12888960-12888979 | Msa0909810:CDS | 35.0% |
| !! | GTATTGATTATGATTGCAGG+GGG | - | chr6_2:12888961-12888980 | Msa0909810:CDS | 35.0% |
| !!! | ATTTTTCGAGCGGTTTTCAT+TGG | - | chr6_2:12889078-12889097 | Msa0909810:CDS | 35.0% |
| !!! | GTTTTGAGTTTTCTGTCTTG+TGG | - | chr6_2:12889199-12889218 | Msa0909810:CDS | 35.0% |
| CTTAACCATTGGATCATTGT+TGG | - | chr6_2:12889244-12889263 | Msa0909810:CDS | 35.0% | |
| CAAAACCAACAATGATCCAA+TGG | + | chr6_2:12889252-12889271 | None:intergenic | 35.0% | |
| CCCTATTTGTATTTCCAAAC+TGG | - | chr6_2:12889461-12889480 | Msa0909810:intron | 35.0% | |
| TTTGTATTTCCAAACTGGTC+AGG | - | chr6_2:12889466-12889485 | Msa0909810:intron | 35.0% | |
| ! | TAAGCCTTCAAGCTTTGATA+TGG | + | chr6_2:12889512-12889531 | None:intergenic | 35.0% |
| TAATGATGCAGTTACTGTTG+TGG | - | chr6_2:12889644-12889663 | Msa0909810:intron | 35.0% | |
| AAATGAAGATGATTCATCCG+AGG | - | chr6_2:12889695-12889714 | Msa0909810:intron | 35.0% | |
| !! | ATATCATGAAATTGGTGCTG+TGG | - | chr6_2:12889812-12889831 | Msa0909810:intron | 35.0% |
| ! | CTTTTGCATATTGTTGCCAT+GGG | + | chr6_2:12889918-12889937 | None:intergenic | 35.0% |
| ! | ACTTTTGCATATTGTTGCCA+TGG | + | chr6_2:12889919-12889938 | None:intergenic | 35.0% |
| TGGCAACAATATGCAAAAGT+CGG | - | chr6_2:12889919-12889938 | Msa0909810:intron | 35.0% | |
| TAGAACTCTCATTGCATTCT+CGG | + | chr6_2:12890235-12890254 | None:intergenic | 35.0% | |
| ! | TGGTTCTGTAGCTTTCTATA+AGG | - | chr6_2:12890408-12890427 | Msa0909810:intron | 35.0% |
| !! | ATTGTTCGAGAGTGTTTCAA+GGG | + | chr6_2:12890832-12890851 | None:intergenic | 35.0% |
| ! | AAGGACAGAAAAAGGTTTTG+AGG | - | chr6_2:12891087-12891106 | Msa0909810:intron | 35.0% |
| AAAGAAGTGAAAGCAGCAAA+AGG | + | chr6_2:12891176-12891195 | None:intergenic | 35.0% | |
| GGCAAAACTAGATCATGTTA+TGG | - | chr6_2:12891211-12891230 | Msa0909810:CDS | 35.0% | |
| GAACCATTGTACAAAGGGAT+AGG | - | chr6_2:12888810-12888829 | Msa0909810:CDS | 40.0% | |
| TCATGGAGTTTACAGTAGGT+AGG | - | chr6_2:12888871-12888890 | Msa0909810:CDS | 40.0% | |
| AACTCTGTCAGCAGGATTAT+TGG | - | chr6_2:12889017-12889036 | Msa0909810:CDS | 40.0% | |
| !!! | GGTGCTGCAGTTTTTGTTTT+AGG | - | chr6_2:12889099-12889118 | Msa0909810:CDS | 40.0% |
| !!! | TGGATCATTGTTGGTTTTGC+AGG | - | chr6_2:12889253-12889272 | Msa0909810:intron | 40.0% |
| AATAGCAACACCGATGCATA+TGG | + | chr6_2:12889428-12889447 | None:intergenic | 40.0% | |
| TCCACCATATCAAAGCTTGA+AGG | - | chr6_2:12889505-12889524 | Msa0909810:intron | 40.0% | |
| GCACTTGTAAATAGGATCCT+CGG | + | chr6_2:12889715-12889734 | None:intergenic | 40.0% | |
| GCTTCGTAGCACTTGTAAAT+AGG | + | chr6_2:12889723-12889742 | None:intergenic | 40.0% | |
| AACAGGCAATGCAAGCTAAT+TGG | - | chr6_2:12889860-12889879 | Msa0909810:intron | 40.0% | |
| ACAGGCAATGCAAGCTAATT+GGG | - | chr6_2:12889861-12889880 | Msa0909810:intron | 40.0% | |
| ! | GTGTCTTCAGTCTGAAATTC+AGG | - | chr6_2:12889987-12890006 | Msa0909810:CDS | 40.0% |
| AACAGATTGACAGGTAACCT+TGG | + | chr6_2:12890453-12890472 | None:intergenic | 40.0% | |
| !! | GATTGTTCGAGAGTGTTTCA+AGG | + | chr6_2:12890833-12890852 | None:intergenic | 40.0% |
| CAATCTCAACGAAGCTTTAC+AGG | - | chr6_2:12890848-12890867 | Msa0909810:intron | 40.0% | |
| TTGAAAAAGTTGGGCGTTCT+GGG | + | chr6_2:12890960-12890979 | None:intergenic | 40.0% | |
| GAACTAACAAAAGAAGGGCA+AGG | - | chr6_2:12891068-12891087 | Msa0909810:intron | 40.0% | |
| ! | GTCATAGTCTTACTCAGTTG+TGG | + | chr6_2:12891113-12891132 | None:intergenic | 40.0% |
| TGCTTTCACTTCTTTGCTTG+TGG | - | chr6_2:12891181-12891200 | Msa0909810:CDS | 40.0% | |
| ! | CACTTTAGAGAGTTCAGAGA+TGG | - | chr6_2:12891263-12891282 | Msa0909810:CDS | 40.0% |
| ! | GTGAATGACTTGCCTTCTTA+TGG | - | chr6_2:12891335-12891354 | Msa0909810:CDS | 40.0% |
| ! | AATGACTTGCCTTCTTATGG+AGG | - | chr6_2:12891338-12891357 | Msa0909810:CDS | 40.0% |
| GTGGTCATGGAGTTTACAGT+AGG | - | chr6_2:12888867-12888886 | Msa0909810:CDS | 45.0% | |
| !!! | ACCTGGTCGTATTTTTCGAG+CGG | - | chr6_2:12889068-12889087 | Msa0909810:CDS | 45.0% |
| ! | TGAGTTTTCTGTCTTGTGGC+TGG | - | chr6_2:12889203-12889222 | Msa0909810:CDS | 45.0% |
| ! | GAGCTTCTGCTACTTATGTG+AGG | - | chr6_2:12889275-12889294 | Msa0909810:intron | 45.0% |
| ! | GCCTTCAAGCTTTGATATGG+TGG | + | chr6_2:12889509-12889528 | None:intergenic | 45.0% |
| GGCTTAGCCAACTCTATAGA+AGG | - | chr6_2:12889526-12889545 | Msa0909810:intron | 45.0% | |
| TGGCAGCTTCTTGAGTATCT+TGG | + | chr6_2:12889889-12889908 | None:intergenic | 45.0% | |
| GATACTCAAGAAGCTGCCAT+AGG | - | chr6_2:12889890-12889909 | Msa0909810:intron | 45.0% | |
| ATTGTTGCCATGGGATCCTA+TGG | + | chr6_2:12889909-12889928 | None:intergenic | 45.0% | |
| CATCTCATCATTGAGCTCCA+AGG | - | chr6_2:12890433-12890452 | Msa0909810:intron | 45.0% | |
| TATGGCTCATGAAGACACCA+AGG | - | chr6_2:12890703-12890722 | Msa0909810:intron | 45.0% | |
| ! | TATAGATCGCGGATTGACCT+TGG | + | chr6_2:12890723-12890742 | None:intergenic | 45.0% |
| AGGTTATGGCCAACAGCATA+AGG | - | chr6_2:12890790-12890809 | Msa0909810:intron | 45.0% | |
| ACGCTTGTTCCTTATGCTGT+TGG | + | chr6_2:12890802-12890821 | None:intergenic | 45.0% | |
| !!! | TGGGAGTTTTGGGGGTTATA+GGG | + | chr6_2:12890941-12890960 | None:intergenic | 45.0% |
| CTTGAAAAAGTTGGGCGTTC+TGG | + | chr6_2:12890961-12890980 | None:intergenic | 45.0% | |
| AGTGATTATTGTTCCCCGGT+CGG | - | chr6_2:12891020-12891039 | Msa0909810:intron | 45.0% | |
| !! | TCTTTCGATTTGGTTCCGAC+CGG | + | chr6_2:12891038-12891057 | None:intergenic | 45.0% |
| TCCCGGGAACTAACAAAAGA+AGG | - | chr6_2:12891062-12891081 | Msa0909810:intron | 45.0% | |
| ! | CCCTTCTTTTGTTAGTTCCC+GGG | + | chr6_2:12891066-12891085 | None:intergenic | 45.0% |
| CCCGGGAACTAACAAAAGAA+GGG | - | chr6_2:12891063-12891082 | Msa0909810:intron | 45.0% | |
| ! | GCCCTTCTTTTGTTAGTTCC+CGG | + | chr6_2:12891067-12891086 | None:intergenic | 45.0% |
| AGAAGGGCAAGGACAGAAAA+AGG | - | chr6_2:12891079-12891098 | Msa0909810:intron | 45.0% | |
| ! | GTAGTGCTTCTGAGAACTCA+AGG | + | chr6_2:12891154-12891173 | None:intergenic | 45.0% |
| CACTTCTTTGCTTGTGGAGA+TGG | - | chr6_2:12891187-12891206 | Msa0909810:CDS | 45.0% | |
| TTCTTTGCTTGTGGAGATGG+TGG | - | chr6_2:12891190-12891209 | Msa0909810:CDS | 45.0% | |
| TACTCTGCTCCTCCATAAGA+AGG | + | chr6_2:12891350-12891369 | None:intergenic | 45.0% | |
| TGTTGTGGCTGTCATGACTG+TGG | - | chr6_2:12888842-12888861 | Msa0909810:CDS | 50.0% | |
| CATGACTGTGGTTGTGGTCA+TGG | - | chr6_2:12888854-12888873 | Msa0909810:CDS | 50.0% | |
| GGATTAGGAACTCTGTCAGC+AGG | - | chr6_2:12889009-12889028 | Msa0909810:CDS | 50.0% | |
| GAGTATCTTGGAGATGCACC+TGG | - | chr6_2:12889051-12889070 | Msa0909810:CDS | 50.0% | |
| ACCGCTCGAAAAATACGACC+AGG | + | chr6_2:12889072-12889091 | None:intergenic | 50.0% | |
| CGCGTCTCTACCATATGCAT+CGG | - | chr6_2:12889415-12889434 | Msa0909810:intron | 50.0% | |
| AGGTCTTCTCCTGACCAGTT+TGG | + | chr6_2:12889478-12889497 | None:intergenic | 50.0% | |
| TACACTGTCGTAGCACTGCA+TGG | - | chr6_2:12889964-12889983 | Msa0909810:intron | 50.0% | |
| ACACTGTCGTAGCACTGCAT+GGG | - | chr6_2:12889965-12889984 | Msa0909810:intron | 50.0% | |
| ! | TCGCAACCGCAGCTTTTACT+AGG | - | chr6_2:12890891-12890910 | Msa0909810:CDS | 50.0% |
| CTCGAGCCTAGTAAAAGCTG+CGG | + | chr6_2:12890900-12890919 | None:intergenic | 50.0% | |
| !!! | CTGGGAGTTTTGGGGGTTAT+AGG | + | chr6_2:12890942-12890961 | None:intergenic | 50.0% |
| !!! | TTGGGCGTTCTGGGAGTTTT+GGG | + | chr6_2:12890951-12890970 | None:intergenic | 50.0% |
| !! | TTTCGATTTGGTTCCGACCG+GGG | + | chr6_2:12891036-12891055 | None:intergenic | 50.0% |
| !! | CTTTCGATTTGGTTCCGACC+GGG | + | chr6_2:12891037-12891056 | None:intergenic | 50.0% |
| !! | CCAAATCGAAAGAGCACTCC+CGG | - | chr6_2:12891045-12891064 | Msa0909810:intron | 50.0% |
| !! | CAAATCGAAAGAGCACTCCC+GGG | - | chr6_2:12891046-12891065 | Msa0909810:intron | 50.0% |
| GGCTGTCATGACTGTGGTTG+TGG | - | chr6_2:12888848-12888867 | Msa0909810:CDS | 55.0% | |
| GCAGGGGGAACCTTATGCAA+AGG | - | chr6_2:12888976-12888995 | Msa0909810:CDS | 55.0% | |
| GAAGCTGCCATAGGATCCCA+TGG | - | chr6_2:12889899-12889918 | Msa0909810:intron | 55.0% | |
| !!! | TGGGCGTTCTGGGAGTTTTG+GGG | + | chr6_2:12890950-12890969 | None:intergenic | 55.0% |
| !!! | GTTGGGCGTTCTGGGAGTTT+TGG | + | chr6_2:12890952-12890971 | None:intergenic | 55.0% |
| !! | CCGGGAGTGCTCTTTCGATT+TGG | + | chr6_2:12891048-12891067 | None:intergenic | 55.0% |
| !!! | GGGCGTTCTGGGAGTTTTGG+GGG | + | chr6_2:12890949-12890968 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 12888612 | 12891370 | 12888612 | ID=Msa0909810;Name=Msa0909810 |
| chr6_2 | mRNA | 12888612 | 12891370 | 12888612 | ID=Msa0909810-mRNA-1;Parent=Msa0909810;Name=Msa0909810-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|6|0|536 |
| chr6_2 | exon | 12891094 | 12891370 | 12891094 | ID=Msa0909810-mRNA-1:exon:2955;Parent=Msa0909810-mRNA-1 |
| chr6_2 | exon | 12890862 | 12891002 | 12890862 | ID=Msa0909810-mRNA-1:exon:2954;Parent=Msa0909810-mRNA-1 |
| chr6_2 | exon | 12890435 | 12890707 | 12890435 | ID=Msa0909810-mRNA-1:exon:2953;Parent=Msa0909810-mRNA-1 |
| chr6_2 | exon | 12890206 | 12890327 | 12890206 | ID=Msa0909810-mRNA-1:exon:2952;Parent=Msa0909810-mRNA-1 |
| chr6_2 | exon | 12889974 | 12890117 | 12889974 | ID=Msa0909810-mRNA-1:exon:2951;Parent=Msa0909810-mRNA-1 |
| chr6_2 | exon | 12888612 | 12889265 | 12888612 | ID=Msa0909810-mRNA-1:exon:2950;Parent=Msa0909810-mRNA-1 |
| chr6_2 | CDS | 12891094 | 12891370 | 12891094 | ID=Msa0909810-mRNA-1:cds;Parent=Msa0909810-mRNA-1 |
| chr6_2 | CDS | 12890862 | 12891002 | 12890862 | ID=Msa0909810-mRNA-1:cds;Parent=Msa0909810-mRNA-1 |
| chr6_2 | CDS | 12890435 | 12890707 | 12890435 | ID=Msa0909810-mRNA-1:cds;Parent=Msa0909810-mRNA-1 |
| chr6_2 | CDS | 12890206 | 12890327 | 12890206 | ID=Msa0909810-mRNA-1:cds;Parent=Msa0909810-mRNA-1 |
| chr6_2 | CDS | 12889974 | 12890117 | 12889974 | ID=Msa0909810-mRNA-1:cds;Parent=Msa0909810-mRNA-1 |
| chr6_2 | CDS | 12888612 | 12889265 | 12888612 | ID=Msa0909810-mRNA-1:cds;Parent=Msa0909810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
