Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454360 | sp|O49696|ALMTC_ARATH | 53.005 | 549 | 209 | 8 | 22 | 536 | 27 | 560 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454360 | A0A072VSQ7 | 97.765 | 537 | 11 | 1 | 1 | 536 | 1 | 537 | 0.0 | 1088 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037280 | Msa1454360 | 0.816109 | 6.551283e-52 | -8.615850e-47 |
| Msa0045310 | Msa1454360 | 0.976221 | 2.056792e-141 | -8.615850e-47 |
| Msa0115620 | Msa1454360 | 0.854989 | 8.520192e-62 | -8.615850e-47 |
| Msa1364970 | Msa1454360 | 0.803315 | 3.697178e-49 | -8.615850e-47 |
| Msa1367460 | Msa1454360 | 0.813248 | 2.817991e-51 | -8.615850e-47 |
| Msa1368400 | Msa1454360 | 0.803562 | 3.286239e-49 | -8.615850e-47 |
| Msa1411370 | Msa1454360 | 0.821852 | 3.238903e-53 | -8.615850e-47 |
| Msa1412410 | Msa1454360 | 0.823434 | 1.387898e-53 | -8.615850e-47 |
| Msa1427860 | Msa1454360 | 0.820231 | 7.651144e-53 | -8.615850e-47 |
| Msa1439860 | Msa1454360 | 0.817024 | 4.086029e-52 | -8.615850e-47 |
| Msa0129640 | Msa1454360 | 0.814358 | 1.604473e-51 | -8.615850e-47 |
| Msa0178000 | Msa1454360 | 0.809825 | 1.562644e-50 | -8.615850e-47 |
| Msa0386890 | Msa1454360 | 0.804306 | 2.301677e-49 | -8.615850e-47 |
| Msa0524260 | Msa1454360 | 0.817092 | 3.944591e-52 | -8.615850e-47 |
| Msa0524370 | Msa1454360 | 0.801619 | 8.267138e-49 | -8.615850e-47 |
| Msa0873910 | Msa1454360 | 0.817649 | 2.955408e-52 | -8.615850e-47 |
| Msa0906680 | Msa1454360 | 0.800394 | 1.471203e-48 | -8.615850e-47 |
| Msa0909810 | Msa1454360 | 0.964971 | 5.290919e-124 | -8.615850e-47 |
| Msa0975950 | Msa1454360 | 0.821545 | 3.814207e-53 | -8.615850e-47 |
| Msa0975960 | Msa1454360 | 0.820196 | 7.793651e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454360 | MtrunA17_Chr1g0212291 | 97.765 | 537 | 11 | 1 | 1 | 536 | 1 | 537 | 0.0 | 1088 |
| Msa1454360 | MtrunA17_Chr1g0212201 | 81.051 | 533 | 95 | 2 | 4 | 534 | 7 | 535 | 0.0 | 905 |
| Msa1454360 | MtrunA17_Chr1g0212251 | 81.495 | 535 | 89 | 5 | 4 | 534 | 3 | 531 | 0.0 | 899 |
| Msa1454360 | MtrunA17_Chr4g0054741 | 59.665 | 538 | 198 | 6 | 1 | 534 | 11 | 533 | 0.0 | 604 |
| Msa1454360 | MtrunA17_Chr5g0400471 | 55.983 | 468 | 171 | 6 | 94 | 533 | 3 | 463 | 3.68e-168 | 484 |
| Msa1454360 | MtrunA17_Chr4g0054771 | 56.675 | 397 | 156 | 4 | 140 | 534 | 3 | 385 | 1.61e-147 | 429 |
| Msa1454360 | MtrunA17_Chr1g0188871 | 40.415 | 386 | 219 | 4 | 11 | 395 | 23 | 398 | 1.18e-96 | 301 |
| Msa1454360 | MtrunA17_Chr1g0188881 | 41.860 | 344 | 192 | 4 | 37 | 378 | 51 | 388 | 3.27e-93 | 293 |
| Msa1454360 | MtrunA17_Chr4g0025591 | 40.449 | 356 | 201 | 3 | 23 | 370 | 19 | 371 | 1.00e-85 | 273 |
| Msa1454360 | MtrunA17_Chr7g0267471 | 43.662 | 355 | 191 | 3 | 1 | 351 | 1 | 350 | 1.01e-83 | 268 |
| Msa1454360 | MtrunA17_Chr8g0390931 | 32.094 | 511 | 303 | 11 | 25 | 505 | 47 | 543 | 5.06e-79 | 258 |
| Msa1454360 | MtrunA17_Chr2g0321971 | 42.587 | 317 | 174 | 3 | 38 | 351 | 37 | 348 | 1.34e-78 | 254 |
| Msa1454360 | MtrunA17_Chr6g0484691 | 33.460 | 526 | 308 | 13 | 15 | 505 | 58 | 576 | 1.92e-78 | 258 |
| Msa1454360 | MtrunA17_Chr7g0259731 | 38.486 | 317 | 185 | 4 | 43 | 355 | 61 | 371 | 8.57e-75 | 243 |
| Msa1454360 | MtrunA17_Chr8g0390921 | 31.335 | 517 | 311 | 11 | 24 | 505 | 46 | 553 | 3.54e-72 | 240 |
| Msa1454360 | MtrunA17_Chr1g0210101 | 32.172 | 488 | 297 | 11 | 36 | 505 | 111 | 582 | 5.90e-71 | 238 |
| Msa1454360 | MtrunA17_Chr2g0321961 | 37.568 | 370 | 220 | 6 | 17 | 380 | 13 | 377 | 4.49e-69 | 229 |
| Msa1454360 | MtrunA17_Chr8g0390901 | 29.797 | 443 | 276 | 10 | 92 | 505 | 9 | 445 | 1.41e-59 | 204 |
| Msa1454360 | MtrunA17_Chr4g0054761 | 58.741 | 143 | 58 | 1 | 1 | 142 | 11 | 153 | 5.04e-36 | 132 |
| Msa1454360 | MtrunA17_Chr5g0400481 | 51.579 | 95 | 46 | 0 | 2 | 96 | 21 | 115 | 5.48e-27 | 105 |
| Msa1454360 | MtrunA17_Chr1g0209601 | 79.592 | 49 | 9 | 1 | 11 | 59 | 5 | 52 | 1.40e-18 | 79.7 |
| Msa1454360 | MtrunA17_Chr8g0390911 | 45.070 | 71 | 38 | 1 | 24 | 93 | 50 | 120 | 2.96e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454360 | AT4G17970.1 | 53.005 | 549 | 209 | 8 | 22 | 536 | 27 | 560 | 0.0 | 563 |
| Msa1454360 | AT5G46610.1 | 55.621 | 507 | 201 | 7 | 32 | 520 | 35 | 535 | 0.0 | 549 |
| Msa1454360 | AT5G46600.1 | 53.535 | 495 | 206 | 5 | 32 | 506 | 36 | 526 | 7.19e-179 | 514 |
| Msa1454360 | AT5G46610.2 | 51.158 | 518 | 202 | 9 | 24 | 520 | 24 | 511 | 2.46e-171 | 494 |
| Msa1454360 | AT5G46610.3 | 48.649 | 518 | 192 | 9 | 24 | 520 | 24 | 488 | 9.25e-156 | 454 |
| Msa1454360 | AT4G00910.1 | 35.232 | 474 | 245 | 6 | 34 | 505 | 54 | 467 | 4.38e-98 | 306 |
| Msa1454360 | AT1G08440.1 | 40.698 | 344 | 199 | 2 | 38 | 378 | 13 | 354 | 7.99e-80 | 259 |
| Msa1454360 | AT3G18440.1 | 31.621 | 506 | 305 | 10 | 32 | 505 | 73 | 569 | 2.05e-76 | 253 |
| Msa1454360 | AT3G11680.2 | 38.947 | 380 | 225 | 3 | 1 | 378 | 1 | 375 | 5.23e-76 | 248 |
| Msa1454360 | AT3G11680.1 | 38.992 | 377 | 223 | 3 | 4 | 378 | 2 | 373 | 3.82e-75 | 246 |
| Msa1454360 | AT1G18420.1 | 30.642 | 545 | 318 | 15 | 6 | 505 | 48 | 577 | 1.00e-72 | 242 |
| Msa1454360 | AT1G08430.1 | 38.418 | 354 | 209 | 4 | 31 | 378 | 7 | 357 | 2.54e-72 | 239 |
| Msa1454360 | AT2G27240.2 | 38.617 | 347 | 202 | 4 | 38 | 378 | 13 | 354 | 3.63e-70 | 233 |
| Msa1454360 | AT1G18420.2 | 30.830 | 506 | 299 | 13 | 39 | 505 | 1 | 494 | 2.19e-69 | 231 |
| Msa1454360 | AT2G27240.1 | 36.957 | 368 | 205 | 4 | 38 | 378 | 13 | 380 | 3.15e-68 | 228 |
| Msa1454360 | AT1G25480.1 | 30.980 | 510 | 318 | 12 | 15 | 505 | 47 | 541 | 3.93e-68 | 229 |
| Msa1454360 | AT2G17470.1 | 30.801 | 487 | 310 | 11 | 38 | 505 | 31 | 509 | 3.26e-67 | 226 |
| Msa1454360 | AT2G17470.2 | 30.801 | 487 | 310 | 11 | 38 | 505 | 53 | 531 | 4.16e-67 | 227 |
| Msa1454360 | AT1G68600.1 | 29.502 | 522 | 337 | 13 | 4 | 508 | 25 | 532 | 2.34e-64 | 219 |
| Msa1454360 | AT4G17585.1 | 58.571 | 70 | 24 | 2 | 22 | 90 | 27 | 92 | 1.63e-19 | 85.9 |
Find 90 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGGCGTTCTGGGAGTTT+TGG | 0.203211 | tig0035150:-5406 | Msa1454360:intergenic |
| AACAGGCAATGCAAGCTAAT+TGG | 0.239706 | tig0035150:+4319 | Msa1454360:intron |
| GTTTAGTGAGAAGGACAATT+TGG | 0.240460 | tig0035150:+3165 | Msa1454360:CDS |
| TCATAATTCTTCTTTATATA+AGG | 0.249336 | tig0035150:-3763 | Msa1454360:intergenic |
| CAATCTCAACGAAGCTTTAC+AGG | 0.257338 | tig0035150:+5305 | Msa1454360:CDS |
| TGTTTCATTGTTGTATCTAA+TGG | 0.262149 | tig0035150:+3253 | Msa1454360:CDS |
| GTGAATGACTTGCCTTCTTA+TGG | 0.265915 | tig0035150:+5792 | Msa1454360:CDS |
| AACTCTGTCAGCAGGATTAT+TGG | 0.276589 | tig0035150:+3476 | Msa1454360:CDS |
| CACTTCTTTGCTTGTGGAGA+TGG | 0.301215 | tig0035150:+5644 | Msa1454360:CDS |
| TGATACAATCATCAAATTAA+AGG | 0.304569 | tig0035150:-3812 | Msa1454360:intergenic |
| ACCAGTTTGGAAATACAAAT+AGG | 0.312997 | tig0035150:-3921 | Msa1454360:intergenic |
| GCTTCGTAGCACTTGTAAAT+AGG | 0.321095 | tig0035150:-4179 | Msa1454360:intergenic |
| CCGGGAGTGCTCTTTCGATT+TGG | 0.334816 | tig0035150:-5502 | Msa1454360:intergenic |
| CCCTATTTGTATTTCCAAAC+TGG | 0.338641 | tig0035150:+3920 | Msa1454360:CDS |
| AGAAGGGCAAGGACAGAAAA+AGG | 0.350270 | tig0035150:+5536 | Msa1454360:CDS |
| TGGCAGCTTCTTGAGTATCT+TGG | 0.350454 | tig0035150:-4345 | Msa1454360:intergenic |
| TATGGATAATGTTGAAGAAT+TGG | 0.350765 | tig0035150:+5686 | Msa1454360:CDS |
| GTGTCTTCAGTCTGAAATTC+AGG | 0.356254 | tig0035150:+4446 | Msa1454360:CDS |
| GATAAAGTGAAAAGATTTCC+AGG | 0.363299 | tig0035150:+3143 | Msa1454360:CDS |
| TAAGCCTTCAAGCTTTGATA+TGG | 0.366629 | tig0035150:-3968 | Msa1454360:intergenic |
| AAAGGACTTAATAGAGGATT+AGG | 0.369561 | tig0035150:+3453 | Msa1454360:CDS |
| ATCAAAAGTACTAAAGGTTA+TGG | 0.379933 | tig0035150:+5233 | Msa1454360:CDS |
| TCTATTAAGTCCTTTGCATA+AGG | 0.384312 | tig0035150:-3445 | Msa1454360:intergenic |
| ATGGATAATGTTGAAGAATT+GGG | 0.407626 | tig0035150:+5687 | Msa1454360:CDS |
| AGGTCTTCTCCTGACCAGTT+TGG | 0.409971 | tig0035150:-3934 | Msa1454360:intergenic |
| CCAGTTTGGAAATACAAATA+GGG | 0.412732 | tig0035150:-3920 | Msa1454360:intergenic |
| ATAAAGAAGAATTATGACTA+TGG | 0.417510 | tig0035150:+3769 | Msa1454360:CDS |
| ACAGGCAATGCAAGCTAATT+GGG | 0.419732 | tig0035150:+4320 | Msa1454360:intron |
| CTTTCGATTTGGTTCCGACC+GGG | 0.421203 | tig0035150:-5491 | Msa1454360:intergenic |
| AGAAGGACAATTTGGAAAGT+TGG | 0.427163 | tig0035150:+3173 | Msa1454360:CDS |
| TTTGTATTTCCAAACTGGTC+AGG | 0.429187 | tig0035150:+3925 | Msa1454360:CDS |
| GGCTTAGCCAACTCTATAGA+AGG | 0.433695 | tig0035150:+3985 | Msa1454360:CDS |
| CATGACTGTGGTTGTGGTCA+TGG | 0.437773 | tig0035150:+3319 | Msa1454360:CDS |
| GTGGTTCATTCATTGAAAGT+TGG | 0.442918 | tig0035150:+3215 | Msa1454360:CDS |
| TGCTTTCACTTCTTTGCTTG+TGG | 0.442934 | tig0035150:+5638 | Msa1454360:CDS |
| CCAAATCGAAAGAGCACTCC+CGG | 0.448551 | tig0035150:+5502 | Msa1454360:CDS |
| TAATGGAACCATTGTACAAA+GGG | 0.453257 | tig0035150:+3270 | Msa1454360:CDS |
| GGCTGTCATGACTGTGGTTG+TGG | 0.457254 | tig0035150:+3313 | Msa1454360:CDS |
| ACGCTTGTTCCTTATGCTGT+TGG | 0.462988 | tig0035150:-5256 | Msa1454360:intergenic |
| GGCAAAACTAGATCATGTTA+TGG | 0.464191 | tig0035150:+5668 | Msa1454360:CDS |
| TTGATATGGTGGATTTATGA+AGG | 0.464739 | tig0035150:-3954 | Msa1454360:intergenic |
| TCCACCATATCAAAGCTTGA+AGG | 0.473767 | tig0035150:+3964 | Msa1454360:CDS |
| AGGTTATGGCCAACAGCATA+AGG | 0.474290 | tig0035150:+5247 | Msa1454360:CDS |
| GCCTTCAAGCTTTGATATGG+TGG | 0.475091 | tig0035150:-3965 | Msa1454360:intergenic |
| TTATGCAAAGGACTTAATAG+AGG | 0.486073 | tig0035150:+3447 | Msa1454360:CDS |
| TTCTTTGCTTGTGGAGATGG+TGG | 0.486494 | tig0035150:+5647 | Msa1454360:CDS |
| ATTGTTGCCATGGGATCCTA+TGG | 0.488776 | tig0035150:-4365 | Msa1454360:intergenic |
| AGAAGTATCAAAAGTACTAA+AGG | 0.492579 | tig0035150:+5227 | Msa1454360:CDS |
| TTTCCTATCCCTTTGTACAA+TGG | 0.496607 | tig0035150:-3278 | Msa1454360:intergenic |
| GATTTCCAGGTTTAGTGAGA+AGG | 0.502162 | tig0035150:+3156 | Msa1454360:CDS |
| AATAGCAACACCGATGCATA+TGG | 0.504570 | tig0035150:-3884 | Msa1454360:intergenic |
| TCCCGGGAACTAACAAAAGA+AGG | 0.508227 | tig0035150:+5519 | Msa1454360:CDS |
| AAAGAAGTGAAAGCAGCAAA+AGG | 0.520550 | tig0035150:-5630 | Msa1454360:intergenic |
| GATTGTTCGAGAGTGTTTCA+AGG | 0.521322 | tig0035150:-5287 | Msa1454360:intergenic |
| TATAGATCGCGGATTGACCT+TGG | 0.524660 | tig0035150:-5177 | Msa1454360:intergenic |
| GGATTAGGAACTCTGTCAGC+AGG | 0.527709 | tig0035150:+3468 | Msa1454360:CDS |
| ATTGTCCTTCTCACTAAACC+TGG | 0.532307 | tig0035150:-3161 | Msa1454360:intergenic |
| GTGGTCATGGAGTTTACAGT+AGG | 0.539836 | tig0035150:+3332 | Msa1454360:CDS |
| GAACCATTGTACAAAGGGAT+AGG | 0.540699 | tig0035150:+3275 | Msa1454360:CDS |
| TACTCTGCTCCTCCATAAGA+AGG | 0.541093 | tig0035150:-5804 | Msa1454360:intergenic |
| TACACTGTCGTAGCACTGCA+TGG | 0.544060 | tig0035150:+4423 | Msa1454360:CDS |
| CAAAGATGATCCAAGAAAAG+TGG | 0.544252 | tig0035150:+3196 | Msa1454360:CDS |
| GTCATAGTCTTACTCAGTTG+TGG | 0.547431 | tig0035150:-5567 | Msa1454360:intergenic |
| CACTTTAGAGAGTTCAGAGA+TGG | 0.548017 | tig0035150:+5720 | Msa1454360:CDS |
| TAAAAGTGATTATTGTTCCC+CGG | 0.551200 | tig0035150:+5473 | Msa1454360:CDS |
| ATTGTTCGAGAGTGTTTCAA+GGG | 0.555202 | tig0035150:-5286 | Msa1454360:intergenic |
| TCTTTCGATTTGGTTCCGAC+CGG | 0.560225 | tig0035150:-5492 | Msa1454360:intergenic |
| TTTCGATTTGGTTCCGACCG+GGG | 0.564436 | tig0035150:-5490 | Msa1454360:intergenic |
| GTAGTGCTTCTGAGAACTCA+AGG | 0.566975 | tig0035150:-5608 | Msa1454360:intergenic |
| AATGACTTGCCTTCTTATGG+AGG | 0.579796 | tig0035150:+5795 | Msa1454360:CDS |
| GCACTTGTAAATAGGATCCT+CGG | 0.579858 | tig0035150:-4171 | Msa1454360:intergenic |
| AGTGATTATTGTTCCCCGGT+CGG | 0.585253 | tig0035150:+5477 | Msa1454360:CDS |
| GAGTATCTTGGAGATGCACC+TGG | 0.590500 | tig0035150:+3510 | Msa1454360:CDS |
| GAGCTTCTGCTACTTATGTG+AGG | 0.592460 | tig0035150:+3734 | Msa1454360:CDS |
| CGCGTCTCTACCATATGCAT+CGG | 0.595667 | tig0035150:+3874 | Msa1454360:CDS |
| CTAATGGAACCATTGTACAA+AGG | 0.603339 | tig0035150:+3269 | Msa1454360:CDS |
| GATACTCAAGAAGCTGCCAT+AGG | 0.605358 | tig0035150:+4349 | Msa1454360:CDS |
| TAATGATGCAGTTACTGTTG+TGG | 0.607091 | tig0035150:+4103 | Msa1454360:intron |
| CCCGGGAACTAACAAAAGAA+GGG | 0.610231 | tig0035150:+5520 | Msa1454360:CDS |
| ACACTGTCGTAGCACTGCAT+GGG | 0.611183 | tig0035150:+4424 | Msa1454360:CDS |
| GAAGCTGCCATAGGATCCCA+TGG | 0.613495 | tig0035150:+4358 | Msa1454360:CDS |
| GAACTAACAAAAGAAGGGCA+AGG | 0.617174 | tig0035150:+5525 | Msa1454360:CDS |
| TGGCAACAATATGCAAAAGT+CGG | 0.625675 | tig0035150:+4378 | Msa1454360:CDS |
| CAAATCGAAAGAGCACTCCC+GGG | 0.635370 | tig0035150:+5503 | Msa1454360:CDS |
| AAGAATCTTTGTATAGATCG+CGG | 0.642132 | tig0035150:-5188 | Msa1454360:intergenic |
| CTCGAGCCTAGTAAAAGCTG+CGG | 0.662648 | tig0035150:-5354 | Msa1454360:intergenic |
| TGTTGTGGCTGTCATGACTG+TGG | 0.668854 | tig0035150:+3307 | Msa1454360:CDS |
| AAATGAAGATGATTCATCCG+AGG | 0.672197 | tig0035150:+4154 | Msa1454360:CDS |
| AGCTCAAAATATTATCTACG+CGG | 0.698557 | tig0035150:-3840 | Msa1454360:intergenic |
| TATGGCTCATGAAGACACCA+AGG | 0.726749 | tig0035150:+5160 | Msa1454360:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAATTCTTCTTTATATA+AGG | - | tig0035150:3766-3785 | Msa1454360:intergenic | 15.0% |
| !!! | TATTATTTTCTTCAACAAAA+GGG | - | tig0035150:4254-4273 | Msa1454360:intergenic | 15.0% |
| !!! | ATATTATTTTCTTCAACAAA+AGG | - | tig0035150:4255-4274 | Msa1454360:intergenic | 15.0% |
| !! | AGAAAATAATATCATGAAAT+TGG | + | tig0035150:4263-4282 | Msa1454360:intron | 15.0% |
| !!! | AGTTATATTAAAGATTTTGA+GGG | - | tig0035150:4632-4651 | Msa1454360:intergenic | 15.0% |
| !! | TACACATTTCATTATTAAAT+TGG | + | tig0035150:5056-5075 | Msa1454360:intron | 15.0% |
| !! | ATAAAGAAGAATTATGACTA+TGG | + | tig0035150:3769-3788 | Msa1454360:CDS | 20.0% |
| !! | TGATACAATCATCAAATTAA+AGG | - | tig0035150:3815-3834 | Msa1454360:intergenic | 20.0% |
| !!! | TAATGATGAAAAAGCTTTTA+TGG | + | tig0035150:4044-4063 | Msa1454360:intron | 20.0% |
| !!! | AGGTACTAAATTATCTATTT+TGG | + | tig0035150:4466-4485 | Msa1454360:intron | 20.0% |
| !!! | TTACTAGAAAAGTTTCTTTT+GGG | - | tig0035150:4528-4547 | Msa1454360:intergenic | 20.0% |
| !!! | GCTTTTTATTTAGATTTTTG+AGG | - | tig0035150:4602-4621 | Msa1454360:intergenic | 20.0% |
| !!! | GAGTTATATTAAAGATTTTG+AGG | - | tig0035150:4633-4652 | Msa1454360:intergenic | 20.0% |
| !!! | TGAGCTTTTTTTAGTATTGT+TGG | - | tig0035150:3093-3112 | None:intergenic | 25.0% |
| ! | TGTTTCATTGTTGTATCTAA+TGG | + | tig0035150:3253-3272 | Msa1454360:CDS | 25.0% |
| ! | AATCATAATCAATACGTATG+AGG | - | tig0035150:3415-3434 | Msa1454360:intergenic | 25.0% |
| !!! | GCATTTTTAATTGAGTATCT+TGG | + | tig0035150:3498-3517 | Msa1454360:CDS | 25.0% |
| ! | AATGGTTAAGCAAAACATTA+GGG | - | tig0035150:3693-3712 | Msa1454360:intergenic | 25.0% |
| !! | TATTTTACCTTCTATAGAGT+TGG | - | tig0035150:3995-4014 | Msa1454360:intergenic | 25.0% |
| ! | GTATCAATCTATATAACTGA+TGG | + | tig0035150:4074-4093 | Msa1454360:intron | 25.0% |
| ! | CTTATCATATAGAATTGAAC+AGG | + | tig0035150:4302-4321 | Msa1454360:intron | 25.0% |
| !! | GTTACTAGAAAAGTTTCTTT+TGG | - | tig0035150:4529-4548 | Msa1454360:intergenic | 25.0% |
| !!! | TTTTCTAGTAACTAGAGAAT+GGG | + | tig0035150:4537-4556 | Msa1454360:intron | 25.0% |
| ! | TCAGAAAAATTGCTTTAACA+TGG | + | tig0035150:4845-4864 | Msa1454360:intron | 25.0% |
| ! | GTTATGTTATTGATATCACA+TGG | + | tig0035150:4927-4946 | Msa1454360:intron | 25.0% |
| !! | TCATTGATTATTATGTAGCT+AGG | + | tig0035150:4973-4992 | Msa1454360:intron | 25.0% |
| ! | CGATATATGCATTTAACATA+TGG | + | tig0035150:5142-5161 | Msa1454360:intron | 25.0% |
| !!! | AGAAGTATCAAAAGTACTAA+AGG | + | tig0035150:5227-5246 | Msa1454360:CDS | 25.0% |
| !!! | ATCAAAAGTACTAAAGGTTA+TGG | + | tig0035150:5233-5252 | Msa1454360:CDS | 25.0% |
| ! | TCATCAATCTTGAAAAAGTT+GGG | - | tig0035150:5426-5445 | Msa1454360:intergenic | 25.0% |
| ! | TTCATCAATCTTGAAAAAGT+TGG | - | tig0035150:5427-5446 | Msa1454360:intergenic | 25.0% |
| ! | TATGGATAATGTTGAAGAAT+TGG | + | tig0035150:5686-5705 | Msa1454360:CDS | 25.0% |
| ! | ATGGATAATGTTGAAGAATT+GGG | + | tig0035150:5687-5706 | Msa1454360:CDS | 25.0% |
| CTAAAAAAAGCTCAAGCTAT+TGG | + | tig0035150:3099-3118 | Msa1454360:CDS | 30.0% | |
| GATAAAGTGAAAAGATTTCC+AGG | + | tig0035150:3143-3162 | Msa1454360:CDS | 30.0% | |
| !! | AATGAATGAACCACTTTTCT+TGG | - | tig0035150:3209-3228 | Msa1454360:intergenic | 30.0% |
| TAATGGAACCATTGTACAAA+GGG | + | tig0035150:3270-3289 | Msa1454360:CDS | 30.0% | |
| !! | TACGTATTGATTATGATTGC+AGG | + | tig0035150:3417-3436 | Msa1454360:intron | 30.0% |
| !! | ACGTATTGATTATGATTGCA+GGG | + | tig0035150:3418-3437 | Msa1454360:intron | 30.0% |
| TCTATTAAGTCCTTTGCATA+AGG | - | tig0035150:3448-3467 | Msa1454360:intergenic | 30.0% | |
| TTATGCAAAGGACTTAATAG+AGG | + | tig0035150:3447-3466 | Msa1454360:CDS | 30.0% | |
| AAAGGACTTAATAGAGGATT+AGG | + | tig0035150:3453-3472 | Msa1454360:CDS | 30.0% | |
| CAATGGTTAAGCAAAACATT+AGG | - | tig0035150:3694-3713 | Msa1454360:intergenic | 30.0% | |
| ! | CTAATGTTTTGCTTAACCAT+TGG | + | tig0035150:3692-3711 | Msa1454360:intron | 30.0% |
| AGCTCAAAATATTATCTACG+CGG | - | tig0035150:3843-3862 | Msa1454360:intergenic | 30.0% | |
| !! | CGTAGATAATATTTTGAGCT+TGG | + | tig0035150:3843-3862 | Msa1454360:CDS | 30.0% |
| CCAGTTTGGAAATACAAATA+GGG | - | tig0035150:3923-3942 | Msa1454360:intergenic | 30.0% | |
| ACCAGTTTGGAAATACAAAT+AGG | - | tig0035150:3924-3943 | Msa1454360:intergenic | 30.0% | |
| !! | TTGATATGGTGGATTTATGA+AGG | - | tig0035150:3957-3976 | Msa1454360:intergenic | 30.0% |
| !!! | TGTTTTAGACTCTAAAGCTA+AGG | + | tig0035150:4202-4221 | Msa1454360:CDS | 30.0% |
| !! | CTTTTCTAGTAACTAGAGAA+TGG | + | tig0035150:4536-4555 | Msa1454360:intron | 30.0% |
| TAGAATTCTCATTGCATTCT+CGG | - | tig0035150:4692-4711 | Msa1454360:intergenic | 30.0% | |
| ATAACTAGCTAGAGATATAG+TGG | - | tig0035150:4807-4826 | Msa1454360:intergenic | 30.0% | |
| CAATAACATAACAGATTGAC+AGG | - | tig0035150:4919-4938 | Msa1454360:intergenic | 30.0% | |
| !! | GCTATTGACTTCTCAATTAT+TGG | + | tig0035150:5078-5097 | Msa1454360:intron | 30.0% |
| AAGAATCTTTGTATAGATCG+CGG | - | tig0035150:5191-5210 | Msa1454360:intergenic | 30.0% | |
| TAAAAGTGATTATTGTTCCC+CGG | + | tig0035150:5473-5492 | Msa1454360:CDS | 30.0% | |
| ! | TTCACAGCTGTATTCATTTT+TGG | - | tig0035150:5777-5796 | Msa1454360:intergenic | 30.0% |
| GTTTAGTGAGAAGGACAATT+TGG | + | tig0035150:3165-3184 | Msa1454360:CDS | 35.0% | |
| AGAAGGACAATTTGGAAAGT+TGG | + | tig0035150:3173-3192 | Msa1454360:CDS | 35.0% | |
| CAAAGATGATCCAAGAAAAG+TGG | + | tig0035150:3196-3215 | Msa1454360:CDS | 35.0% | |
| GTGGTTCATTCATTGAAAGT+TGG | + | tig0035150:3215-3234 | Msa1454360:CDS | 35.0% | |
| CTAATGGAACCATTGTACAA+AGG | + | tig0035150:3269-3288 | Msa1454360:CDS | 35.0% | |
| TTTCCTATCCCTTTGTACAA+TGG | - | tig0035150:3281-3300 | Msa1454360:intergenic | 35.0% | |
| GATAGGAAAAAATGCTGTTG+TGG | + | tig0035150:3292-3311 | Msa1454360:CDS | 35.0% | |
| !! | CGTATTGATTATGATTGCAG+GGG | + | tig0035150:3419-3438 | Msa1454360:intron | 35.0% |
| !! | GTATTGATTATGATTGCAGG+GGG | + | tig0035150:3420-3439 | Msa1454360:intron | 35.0% |
| !!! | ATTTTTCGAGCGGTTTTCAT+TGG | + | tig0035150:3537-3556 | Msa1454360:CDS | 35.0% |
| !!! | GTTTTGAGTTTTCTGTCTTG+TGG | + | tig0035150:3658-3677 | Msa1454360:intron | 35.0% |
| CTTAACCATTGGATCATTGT+TGG | + | tig0035150:3703-3722 | Msa1454360:intron | 35.0% | |
| CAAAACCAACAATGATCCAA+TGG | - | tig0035150:3711-3730 | Msa1454360:intergenic | 35.0% | |
| CCCTATTTGTATTTCCAAAC+TGG | + | tig0035150:3920-3939 | Msa1454360:CDS | 35.0% | |
| TTTGTATTTCCAAACTGGTC+AGG | + | tig0035150:3925-3944 | Msa1454360:CDS | 35.0% | |
| ! | TAAGCCTTCAAGCTTTGATA+TGG | - | tig0035150:3971-3990 | Msa1454360:intergenic | 35.0% |
| TAATGATGCAGTTACTGTTG+TGG | + | tig0035150:4103-4122 | Msa1454360:intron | 35.0% | |
| AAATGAAGATGATTCATCCG+AGG | + | tig0035150:4154-4173 | Msa1454360:CDS | 35.0% | |
| ! | CTTTTGCATATTGTTGCCAT+GGG | - | tig0035150:4377-4396 | Msa1454360:intergenic | 35.0% |
| ! | ACTTTTGCATATTGTTGCCA+TGG | - | tig0035150:4378-4397 | Msa1454360:intergenic | 35.0% |
| TGGCAACAATATGCAAAAGT+CGG | + | tig0035150:4378-4397 | Msa1454360:CDS | 35.0% | |
| ! | TGGTTCTGTAGCTTTCTATA+AGG | + | tig0035150:4865-4884 | Msa1454360:intron | 35.0% |
| !! | ATTGTTCGAGAGTGTTTCAA+GGG | - | tig0035150:5289-5308 | Msa1454360:intergenic | 35.0% |
| ! | AAGGACAGAAAAAGGTTTTG+AGG | + | tig0035150:5544-5563 | Msa1454360:CDS | 35.0% |
| AAAGAAGTGAAAGCAGCAAA+AGG | - | tig0035150:5633-5652 | Msa1454360:intergenic | 35.0% | |
| GGCAAAACTAGATCATGTTA+TGG | + | tig0035150:5668-5687 | Msa1454360:CDS | 35.0% | |
| GATTTCCAGGTTTAGTGAGA+AGG | + | tig0035150:3156-3175 | Msa1454360:CDS | 40.0% | |
| ATTGTCCTTCTCACTAAACC+TGG | - | tig0035150:3164-3183 | Msa1454360:intergenic | 40.0% | |
| GAACCATTGTACAAAGGGAT+AGG | + | tig0035150:3275-3294 | Msa1454360:CDS | 40.0% | |
| TCATGGAGTTTACAGTAGGT+AGG | + | tig0035150:3336-3355 | Msa1454360:intron | 40.0% | |
| AACTCTGTCAGCAGGATTAT+TGG | + | tig0035150:3476-3495 | Msa1454360:CDS | 40.0% | |
| !!! | GGTGCTGCAGTTTTTGTTTT+AGG | + | tig0035150:3558-3577 | Msa1454360:CDS | 40.0% |
| !!! | TGGATCATTGTTGGTTTTGC+AGG | + | tig0035150:3712-3731 | Msa1454360:intron | 40.0% |
| AATAGCAACACCGATGCATA+TGG | - | tig0035150:3887-3906 | Msa1454360:intergenic | 40.0% | |
| TCCACCATATCAAAGCTTGA+AGG | + | tig0035150:3964-3983 | Msa1454360:CDS | 40.0% | |
| GCACTTGTAAATAGGATCCT+CGG | - | tig0035150:4174-4193 | Msa1454360:intergenic | 40.0% | |
| GCTTCGTAGCACTTGTAAAT+AGG | - | tig0035150:4182-4201 | Msa1454360:intergenic | 40.0% | |
| AACAGGCAATGCAAGCTAAT+TGG | + | tig0035150:4319-4338 | Msa1454360:intron | 40.0% | |
| ACAGGCAATGCAAGCTAATT+GGG | + | tig0035150:4320-4339 | Msa1454360:intron | 40.0% | |
| ! | GTGTCTTCAGTCTGAAATTC+AGG | + | tig0035150:4446-4465 | Msa1454360:CDS | 40.0% |
| AACAGATTGACAGGTAACCT+TGG | - | tig0035150:4910-4929 | Msa1454360:intergenic | 40.0% | |
| !! | GATTGTTCGAGAGTGTTTCA+AGG | - | tig0035150:5290-5309 | Msa1454360:intergenic | 40.0% |
| CAATCTCAACGAAGCTTTAC+AGG | + | tig0035150:5305-5324 | Msa1454360:CDS | 40.0% | |
| TTGAAAAAGTTGGGCGTTCT+GGG | - | tig0035150:5417-5436 | Msa1454360:intergenic | 40.0% | |
| GAACTAACAAAAGAAGGGCA+AGG | + | tig0035150:5525-5544 | Msa1454360:CDS | 40.0% | |
| ! | GTCATAGTCTTACTCAGTTG+TGG | - | tig0035150:5570-5589 | Msa1454360:intergenic | 40.0% |
| TGCTTTCACTTCTTTGCTTG+TGG | + | tig0035150:5638-5657 | Msa1454360:CDS | 40.0% | |
| ! | CACTTTAGAGAGTTCAGAGA+TGG | + | tig0035150:5720-5739 | Msa1454360:CDS | 40.0% |
| ! | GTGAATGACTTGCCTTCTTA+TGG | + | tig0035150:5792-5811 | Msa1454360:CDS | 40.0% |
| ! | AATGACTTGCCTTCTTATGG+AGG | + | tig0035150:5795-5814 | Msa1454360:CDS | 40.0% |
| GTGGTCATGGAGTTTACAGT+AGG | + | tig0035150:3332-3351 | Msa1454360:CDS | 45.0% | |
| !!! | ACCTGGTCGTATTTTTCGAG+CGG | + | tig0035150:3527-3546 | Msa1454360:CDS | 45.0% |
| ! | TGAGTTTTCTGTCTTGTGGC+TGG | + | tig0035150:3662-3681 | Msa1454360:intron | 45.0% |
| ! | GAGCTTCTGCTACTTATGTG+AGG | + | tig0035150:3734-3753 | Msa1454360:CDS | 45.0% |
| ! | GCCTTCAAGCTTTGATATGG+TGG | - | tig0035150:3968-3987 | Msa1454360:intergenic | 45.0% |
| GGCTTAGCCAACTCTATAGA+AGG | + | tig0035150:3985-4004 | Msa1454360:CDS | 45.0% | |
| TGGCAGCTTCTTGAGTATCT+TGG | - | tig0035150:4348-4367 | Msa1454360:intergenic | 45.0% | |
| GATACTCAAGAAGCTGCCAT+AGG | + | tig0035150:4349-4368 | Msa1454360:CDS | 45.0% | |
| ATTGTTGCCATGGGATCCTA+TGG | - | tig0035150:4368-4387 | Msa1454360:intergenic | 45.0% | |
| CATCTCATCATTGAGCTCCA+AGG | + | tig0035150:4890-4909 | Msa1454360:intron | 45.0% | |
| TATGGCTCATGAAGACACCA+AGG | + | tig0035150:5160-5179 | Msa1454360:intron | 45.0% | |
| ! | TATAGATCGCGGATTGACCT+TGG | - | tig0035150:5180-5199 | Msa1454360:intergenic | 45.0% |
| AGGTTATGGCCAACAGCATA+AGG | + | tig0035150:5247-5266 | Msa1454360:CDS | 45.0% | |
| ACGCTTGTTCCTTATGCTGT+TGG | - | tig0035150:5259-5278 | Msa1454360:intergenic | 45.0% | |
| !!! | TGGGAGTTTTGGGGGTTATA+GGG | - | tig0035150:5398-5417 | Msa1454360:intergenic | 45.0% |
| CTTGAAAAAGTTGGGCGTTC+TGG | - | tig0035150:5418-5437 | Msa1454360:intergenic | 45.0% | |
| AGTGATTATTGTTCCCCGGT+CGG | + | tig0035150:5477-5496 | Msa1454360:CDS | 45.0% | |
| !! | TCTTTCGATTTGGTTCCGAC+CGG | - | tig0035150:5495-5514 | Msa1454360:intergenic | 45.0% |
| TCCCGGGAACTAACAAAAGA+AGG | + | tig0035150:5519-5538 | Msa1454360:CDS | 45.0% | |
| ! | CCCTTCTTTTGTTAGTTCCC+GGG | - | tig0035150:5523-5542 | Msa1454360:intergenic | 45.0% |
| CCCGGGAACTAACAAAAGAA+GGG | + | tig0035150:5520-5539 | Msa1454360:CDS | 45.0% | |
| ! | GCCCTTCTTTTGTTAGTTCC+CGG | - | tig0035150:5524-5543 | Msa1454360:intergenic | 45.0% |
| AGAAGGGCAAGGACAGAAAA+AGG | + | tig0035150:5536-5555 | Msa1454360:CDS | 45.0% | |
| ! | GTAGTGCTTCTGAGAACTCA+AGG | - | tig0035150:5611-5630 | Msa1454360:intergenic | 45.0% |
| CACTTCTTTGCTTGTGGAGA+TGG | + | tig0035150:5644-5663 | Msa1454360:CDS | 45.0% | |
| TTCTTTGCTTGTGGAGATGG+TGG | + | tig0035150:5647-5666 | Msa1454360:CDS | 45.0% | |
| TACTCTGCTCCTCCATAAGA+AGG | - | tig0035150:5807-5826 | Msa1454360:intergenic | 45.0% | |
| TGTTGTGGCTGTCATGACTG+TGG | + | tig0035150:3307-3326 | Msa1454360:CDS | 50.0% | |
| CATGACTGTGGTTGTGGTCA+TGG | + | tig0035150:3319-3338 | Msa1454360:CDS | 50.0% | |
| GGATTAGGAACTCTGTCAGC+AGG | + | tig0035150:3468-3487 | Msa1454360:CDS | 50.0% | |
| GAGTATCTTGGAGATGCACC+TGG | + | tig0035150:3510-3529 | Msa1454360:CDS | 50.0% | |
| ACCGCTCGAAAAATACGACC+AGG | - | tig0035150:3531-3550 | Msa1454360:intergenic | 50.0% | |
| CGCGTCTCTACCATATGCAT+CGG | + | tig0035150:3874-3893 | Msa1454360:CDS | 50.0% | |
| AGGTCTTCTCCTGACCAGTT+TGG | - | tig0035150:3937-3956 | Msa1454360:intergenic | 50.0% | |
| TACACTGTCGTAGCACTGCA+TGG | + | tig0035150:4423-4442 | Msa1454360:CDS | 50.0% | |
| ACACTGTCGTAGCACTGCAT+GGG | + | tig0035150:4424-4443 | Msa1454360:CDS | 50.0% | |
| ! | TCGCAACCGCAGCTTTTACT+AGG | + | tig0035150:5348-5367 | Msa1454360:CDS | 50.0% |
| CTCGAGCCTAGTAAAAGCTG+CGG | - | tig0035150:5357-5376 | Msa1454360:intergenic | 50.0% | |
| !!! | CTGGGAGTTTTGGGGGTTAT+AGG | - | tig0035150:5399-5418 | Msa1454360:intergenic | 50.0% |
| !!! | TTGGGCGTTCTGGGAGTTTT+GGG | - | tig0035150:5408-5427 | Msa1454360:intergenic | 50.0% |
| !! | TTTCGATTTGGTTCCGACCG+GGG | - | tig0035150:5493-5512 | Msa1454360:intergenic | 50.0% |
| !! | CTTTCGATTTGGTTCCGACC+GGG | - | tig0035150:5494-5513 | Msa1454360:intergenic | 50.0% |
| !! | CCAAATCGAAAGAGCACTCC+CGG | + | tig0035150:5502-5521 | Msa1454360:CDS | 50.0% |
| !! | CAAATCGAAAGAGCACTCCC+GGG | + | tig0035150:5503-5522 | Msa1454360:CDS | 50.0% |
| GGCTGTCATGACTGTGGTTG+TGG | + | tig0035150:3313-3332 | Msa1454360:CDS | 55.0% | |
| GCAGGGGGAACCTTATGCAA+AGG | + | tig0035150:3435-3454 | Msa1454360:intron | 55.0% | |
| GAAGCTGCCATAGGATCCCA+TGG | + | tig0035150:4358-4377 | Msa1454360:CDS | 55.0% | |
| !!! | TGGGCGTTCTGGGAGTTTTG+GGG | - | tig0035150:5407-5426 | Msa1454360:intergenic | 55.0% |
| !!! | GTTGGGCGTTCTGGGAGTTT+TGG | - | tig0035150:5409-5428 | Msa1454360:intergenic | 55.0% |
| !! | CCGGGAGTGCTCTTTCGATT+TGG | - | tig0035150:5505-5524 | Msa1454360:intergenic | 55.0% |
| !!! | GGGCGTTCTGGGAGTTTTGG+GGG | - | tig0035150:5406-5425 | Msa1454360:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0035150 | gene | 3077 | 5827 | 3077 | ID=Msa1454360;Name=Msa1454360 |
| tig0035150 | mRNA | 3077 | 5827 | 3077 | ID=Msa1454360-mRNA-1;Parent=Msa1454360;Name=Msa1454360-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|6|0|536 |
| tig0035150 | exon | 3077 | 3353 | 3077 | ID=Msa1454360-mRNA-1:exon:19696;Parent=Msa1454360-mRNA-1 |
| tig0035150 | exon | 3439 | 3579 | 3439 | ID=Msa1454360-mRNA-1:exon:19697;Parent=Msa1454360-mRNA-1 |
| tig0035150 | exon | 3734 | 4006 | 3734 | ID=Msa1454360-mRNA-1:exon:19698;Parent=Msa1454360-mRNA-1 |
| tig0035150 | exon | 4114 | 4235 | 4114 | ID=Msa1454360-mRNA-1:exon:19699;Parent=Msa1454360-mRNA-1 |
| tig0035150 | exon | 4324 | 4467 | 4324 | ID=Msa1454360-mRNA-1:exon:19700;Parent=Msa1454360-mRNA-1 |
| tig0035150 | exon | 5174 | 5827 | 5174 | ID=Msa1454360-mRNA-1:exon:19701;Parent=Msa1454360-mRNA-1 |
| tig0035150 | CDS | 3077 | 3353 | 3077 | ID=Msa1454360-mRNA-1:cds;Parent=Msa1454360-mRNA-1 |
| tig0035150 | CDS | 3439 | 3579 | 3439 | ID=Msa1454360-mRNA-1:cds;Parent=Msa1454360-mRNA-1 |
| tig0035150 | CDS | 3734 | 4006 | 3734 | ID=Msa1454360-mRNA-1:cds;Parent=Msa1454360-mRNA-1 |
| tig0035150 | CDS | 4114 | 4235 | 4114 | ID=Msa1454360-mRNA-1:cds;Parent=Msa1454360-mRNA-1 |
| tig0035150 | CDS | 4324 | 4467 | 4324 | ID=Msa1454360-mRNA-1:cds;Parent=Msa1454360-mRNA-1 |
| tig0035150 | CDS | 5174 | 5827 | 5174 | ID=Msa1454360-mRNA-1:cds;Parent=Msa1454360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
