Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045310 | sp|O49696|ALMTC_ARATH | 53.005 | 549 | 209 | 8 | 22 | 536 | 27 | 560 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037280 | Msa0045310 | 0.823033 | 1.722334e-53 | -8.615850e-47 |
| Msa0045310 | Msa0115620 | 0.867091 | 1.766921e-65 | -8.615850e-47 |
| Msa0045310 | Msa0129640 | 0.823105 | 1.657159e-53 | -8.615850e-47 |
| Msa0045310 | Msa0178000 | 0.831433 | 1.674449e-55 | -8.615850e-47 |
| Msa0045310 | Msa0386890 | 0.816648 | 4.962958e-52 | -8.615850e-47 |
| Msa0045310 | Msa0458220 | 0.815248 | 1.019145e-51 | -8.615850e-47 |
| Msa0045310 | Msa0504700 | 0.808636 | 2.809670e-50 | -8.615850e-47 |
| Msa0045310 | Msa0524260 | 0.827455 | 1.549800e-54 | -8.615850e-47 |
| Msa0045310 | Msa0524370 | 0.811085 | 8.352536e-51 | -8.615850e-47 |
| Msa0045310 | Msa0657340 | 0.807636 | 4.587567e-50 | -8.615850e-47 |
| Msa0045310 | Msa0672980 | 0.800450 | 1.433338e-48 | -8.615850e-47 |
| Msa0045310 | Msa0873910 | 0.838121 | 3.470923e-57 | -8.615850e-47 |
| Msa0045310 | Msa0906680 | 0.813755 | 2.179923e-51 | -8.615850e-47 |
| Msa0045310 | Msa0909810 | 0.987954 | 3.699550e-172 | -8.615850e-47 |
| Msa0045310 | Msa0975950 | 0.814178 | 1.758567e-51 | -8.615850e-47 |
| Msa0045310 | Msa0975960 | 0.844698 | 6.434724e-59 | -8.615850e-47 |
| Msa0045310 | Msa1364970 | 0.811772 | 5.923420e-51 | -8.615850e-47 |
| Msa0045310 | Msa1367460 | 0.822616 | 2.153558e-53 | -8.615850e-47 |
| Msa0045310 | Msa1368400 | 0.815794 | 7.700919e-52 | -8.615850e-47 |
| Msa0045310 | Msa1411370 | 0.838534 | 2.716771e-57 | -8.615850e-47 |
| Msa0045310 | Msa1412410 | 0.830585 | 2.703240e-55 | -8.615850e-47 |
| Msa0045310 | Msa1417600 | 0.806451 | 8.173629e-50 | -8.615850e-47 |
| Msa0045310 | Msa1427860 | 0.829202 | 5.874695e-55 | -8.615850e-47 |
| Msa0045310 | Msa1435550 | 0.803469 | 3.435331e-49 | -8.615850e-47 |
| Msa0045310 | Msa1439860 | 0.833323 | 5.698214e-56 | -8.615850e-47 |
| Msa0045310 | Msa1454360 | 0.976221 | 2.056792e-141 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045310 | MtrunA17_Chr1g0212291 | 97.952 | 537 | 10 | 1 | 1 | 536 | 1 | 537 | 0.0 | 1089 |
| Msa0045310 | MtrunA17_Chr1g0212201 | 80.863 | 533 | 96 | 2 | 4 | 534 | 7 | 535 | 0.0 | 904 |
| Msa0045310 | MtrunA17_Chr1g0212251 | 81.308 | 535 | 90 | 5 | 4 | 534 | 3 | 531 | 0.0 | 897 |
| Msa0045310 | MtrunA17_Chr4g0054741 | 59.665 | 538 | 198 | 6 | 1 | 534 | 11 | 533 | 0.0 | 604 |
| Msa0045310 | MtrunA17_Chr5g0400471 | 55.983 | 468 | 171 | 6 | 94 | 533 | 3 | 463 | 3.19e-168 | 484 |
| Msa0045310 | MtrunA17_Chr4g0054771 | 56.675 | 397 | 156 | 4 | 140 | 534 | 3 | 385 | 1.53e-147 | 429 |
| Msa0045310 | MtrunA17_Chr1g0188871 | 40.933 | 386 | 217 | 5 | 11 | 395 | 23 | 398 | 5.12e-97 | 302 |
| Msa0045310 | MtrunA17_Chr1g0188881 | 41.860 | 344 | 192 | 4 | 37 | 378 | 51 | 388 | 3.14e-93 | 293 |
| Msa0045310 | MtrunA17_Chr4g0025591 | 40.449 | 356 | 201 | 3 | 23 | 370 | 19 | 371 | 1.23e-85 | 273 |
| Msa0045310 | MtrunA17_Chr7g0267471 | 43.944 | 355 | 190 | 3 | 1 | 351 | 1 | 350 | 5.10e-84 | 269 |
| Msa0045310 | MtrunA17_Chr8g0390931 | 32.094 | 511 | 303 | 11 | 25 | 505 | 47 | 543 | 5.69e-79 | 258 |
| Msa0045310 | MtrunA17_Chr6g0484691 | 33.650 | 526 | 307 | 13 | 15 | 505 | 58 | 576 | 8.84e-79 | 258 |
| Msa0045310 | MtrunA17_Chr2g0321971 | 42.587 | 317 | 174 | 3 | 38 | 351 | 37 | 348 | 1.14e-78 | 254 |
| Msa0045310 | MtrunA17_Chr7g0259731 | 38.486 | 317 | 185 | 4 | 43 | 355 | 61 | 371 | 8.57e-75 | 243 |
| Msa0045310 | MtrunA17_Chr8g0390921 | 31.335 | 517 | 311 | 11 | 24 | 505 | 46 | 553 | 3.12e-72 | 241 |
| Msa0045310 | MtrunA17_Chr1g0210101 | 32.172 | 488 | 297 | 11 | 36 | 505 | 111 | 582 | 5.15e-71 | 238 |
| Msa0045310 | MtrunA17_Chr2g0321961 | 37.838 | 370 | 219 | 6 | 17 | 380 | 13 | 377 | 1.87e-69 | 229 |
| Msa0045310 | MtrunA17_Chr8g0390901 | 29.797 | 443 | 276 | 10 | 92 | 505 | 9 | 445 | 1.38e-59 | 204 |
| Msa0045310 | MtrunA17_Chr4g0054761 | 58.741 | 143 | 58 | 1 | 1 | 142 | 11 | 153 | 5.53e-36 | 131 |
| Msa0045310 | MtrunA17_Chr5g0400481 | 51.579 | 95 | 46 | 0 | 2 | 96 | 21 | 115 | 6.06e-27 | 105 |
| Msa0045310 | MtrunA17_Chr1g0209601 | 77.551 | 49 | 10 | 1 | 11 | 59 | 5 | 52 | 4.38e-18 | 78.2 |
| Msa0045310 | MtrunA17_Chr8g0390911 | 45.070 | 71 | 38 | 1 | 24 | 93 | 50 | 120 | 2.59e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045310 | AT4G17970.1 | 53.005 | 549 | 209 | 8 | 22 | 536 | 27 | 560 | 0.0 | 564 |
| Msa0045310 | AT5G46610.1 | 55.212 | 518 | 205 | 8 | 24 | 520 | 24 | 535 | 0.0 | 550 |
| Msa0045310 | AT5G46600.1 | 53.535 | 495 | 206 | 5 | 32 | 506 | 36 | 526 | 7.19e-179 | 514 |
| Msa0045310 | AT5G46610.2 | 51.351 | 518 | 201 | 9 | 24 | 520 | 24 | 511 | 8.74e-172 | 496 |
| Msa0045310 | AT5G46610.3 | 48.842 | 518 | 191 | 9 | 24 | 520 | 24 | 488 | 3.15e-156 | 455 |
| Msa0045310 | AT4G00910.1 | 35.232 | 474 | 245 | 6 | 34 | 505 | 54 | 467 | 4.92e-98 | 306 |
| Msa0045310 | AT1G08440.1 | 40.698 | 344 | 199 | 2 | 38 | 378 | 13 | 354 | 6.96e-80 | 259 |
| Msa0045310 | AT3G18440.1 | 31.621 | 506 | 305 | 10 | 32 | 505 | 73 | 569 | 1.53e-76 | 253 |
| Msa0045310 | AT3G11680.2 | 38.947 | 380 | 225 | 3 | 1 | 378 | 1 | 375 | 5.75e-76 | 248 |
| Msa0045310 | AT3G11680.1 | 38.992 | 377 | 223 | 3 | 4 | 378 | 2 | 373 | 4.16e-75 | 246 |
| Msa0045310 | AT1G18420.1 | 30.826 | 545 | 317 | 15 | 6 | 505 | 48 | 577 | 3.75e-73 | 243 |
| Msa0045310 | AT1G08430.1 | 38.329 | 347 | 206 | 3 | 38 | 378 | 13 | 357 | 6.91e-72 | 238 |
| Msa0045310 | AT2G27240.2 | 38.617 | 347 | 202 | 4 | 38 | 378 | 13 | 354 | 3.75e-70 | 233 |
| Msa0045310 | AT1G18420.2 | 30.830 | 506 | 299 | 13 | 39 | 505 | 1 | 494 | 2.12e-69 | 231 |
| Msa0045310 | AT2G27240.1 | 36.957 | 368 | 205 | 4 | 38 | 378 | 13 | 380 | 3.19e-68 | 228 |
| Msa0045310 | AT1G25480.1 | 30.980 | 510 | 318 | 12 | 15 | 505 | 47 | 541 | 4.28e-68 | 229 |
| Msa0045310 | AT2G17470.1 | 30.801 | 487 | 310 | 11 | 38 | 505 | 31 | 509 | 3.44e-67 | 226 |
| Msa0045310 | AT2G17470.2 | 30.801 | 487 | 310 | 11 | 38 | 505 | 53 | 531 | 3.91e-67 | 227 |
| Msa0045310 | AT1G68600.1 | 29.828 | 523 | 334 | 14 | 4 | 508 | 25 | 532 | 2.41e-64 | 219 |
| Msa0045310 | AT4G17585.1 | 58.571 | 70 | 24 | 2 | 22 | 90 | 27 | 92 | 1.68e-19 | 85.9 |
Find 89 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGGCGTTCTGGGAGTTT+TGG | 0.203211 | 1_1:-77183802 | None:intergenic |
| GTTTAGTGAAAAGGACAATT+TGG | 0.226534 | 1_1:+77181559 | Msa0045310:CDS |
| AACAGGCAATGCAAGCTAAT+TGG | 0.239706 | 1_1:+77182713 | Msa0045310:intron |
| TCATAATTCTTCTTTATATA+AGG | 0.249336 | 1_1:-77182157 | None:intergenic |
| CAATCTCAACGAAGCTTTAC+AGG | 0.257338 | 1_1:+77183701 | Msa0045310:CDS |
| TGTTTCATTGTTGTATCTAA+TGG | 0.262149 | 1_1:+77181647 | Msa0045310:CDS |
| GTGAATGACTTGCCTTCTTA+TGG | 0.265915 | 1_1:+77184188 | Msa0045310:CDS |
| AACTCTGTCAGCAGGATTAT+TGG | 0.276589 | 1_1:+77181870 | Msa0045310:CDS |
| CACTTCTTTGCTTGTGGAGA+TGG | 0.301215 | 1_1:+77184040 | Msa0045310:CDS |
| TGATACAATCATCAAATTAA+AGG | 0.304569 | 1_1:-77182206 | None:intergenic |
| ACCAGTTTGGAAATACAAAT+AGG | 0.312997 | 1_1:-77182315 | None:intergenic |
| GCTTCGTAGCACTTGTAAAT+AGG | 0.321095 | 1_1:-77182573 | None:intergenic |
| CCGGGAGTGCTCTTTCGATT+TGG | 0.334816 | 1_1:-77183898 | None:intergenic |
| CCCTATTTGTATTTCCAAAC+TGG | 0.338641 | 1_1:+77182314 | Msa0045310:CDS |
| AGAAGGGCAAGGACAGAAAA+AGG | 0.350270 | 1_1:+77183932 | Msa0045310:CDS |
| TGGCAGCTTCTTGAGTATCT+TGG | 0.350454 | 1_1:-77182739 | None:intergenic |
| TATGGATAATGTTGAAGAAT+TGG | 0.350765 | 1_1:+77184082 | Msa0045310:CDS |
| GTGTCTTCAGTCTGAAATTC+AGG | 0.356254 | 1_1:+77182840 | Msa0045310:CDS |
| GATAAAGTGAAAAGATTTCC+AGG | 0.363299 | 1_1:+77181537 | Msa0045310:CDS |
| TAAGCCTTCAAGCTTTGATA+TGG | 0.366629 | 1_1:-77182362 | None:intergenic |
| AAAGGACTTAATAGAGGATT+AGG | 0.369561 | 1_1:+77181847 | Msa0045310:CDS |
| ATCAAAAGTACTAAAGGTTA+TGG | 0.379933 | 1_1:+77183629 | Msa0045310:CDS |
| TCTATTAAGTCCTTTGCATA+AGG | 0.384312 | 1_1:-77181839 | None:intergenic |
| AAAAGGACAATTTGGAAAGT+TGG | 0.395542 | 1_1:+77181567 | Msa0045310:CDS |
| ATGGATAATGTTGAAGAATT+GGG | 0.407626 | 1_1:+77184083 | Msa0045310:CDS |
| AGGTCTTCTCCTGACCAGTT+TGG | 0.409971 | 1_1:-77182328 | None:intergenic |
| CCAGTTTGGAAATACAAATA+GGG | 0.412732 | 1_1:-77182314 | None:intergenic |
| ATAAAGAAGAATTATGACTA+TGG | 0.417510 | 1_1:+77182163 | Msa0045310:CDS |
| GATTTCCAGGTTTAGTGAAA+AGG | 0.418815 | 1_1:+77181550 | Msa0045310:CDS |
| ACAGGCAATGCAAGCTAATT+GGG | 0.419732 | 1_1:+77182714 | Msa0045310:intron |
| CTTTCGATTTGGTTCCGACC+GGG | 0.421203 | 1_1:-77183887 | None:intergenic |
| TTTGTATTTCCAAACTGGTC+AGG | 0.429187 | 1_1:+77182319 | Msa0045310:CDS |
| GGCTTAGCCAACTCTATAGA+AGG | 0.433695 | 1_1:+77182379 | Msa0045310:CDS |
| CATGACTGTGGTTGTGGTCA+TGG | 0.437773 | 1_1:+77181713 | Msa0045310:CDS |
| GTGGTTCATTCATTGAAAGT+TGG | 0.442918 | 1_1:+77181609 | Msa0045310:CDS |
| TGCTTTCACTTCTTTGCTTG+TGG | 0.442934 | 1_1:+77184034 | Msa0045310:CDS |
| CCAAATCGAAAGAGCACTCC+CGG | 0.448551 | 1_1:+77183898 | Msa0045310:CDS |
| TAATGGAACCATTGTACAAA+GGG | 0.453257 | 1_1:+77181664 | Msa0045310:CDS |
| GGCTGTCATGACTGTGGTTG+TGG | 0.457254 | 1_1:+77181707 | Msa0045310:CDS |
| ACGCTTGTTCCTTATGCTGT+TGG | 0.462988 | 1_1:-77183652 | None:intergenic |
| GGCAAAACTAGATCATGTTA+TGG | 0.464191 | 1_1:+77184064 | Msa0045310:CDS |
| TTGATATGGTGGATTTATGA+AGG | 0.464739 | 1_1:-77182348 | None:intergenic |
| TCCACCATATCAAAGCTTGA+AGG | 0.473767 | 1_1:+77182358 | Msa0045310:CDS |
| AGGTTATGGCCAACAGCATA+AGG | 0.474290 | 1_1:+77183643 | Msa0045310:CDS |
| GCCTTCAAGCTTTGATATGG+TGG | 0.475091 | 1_1:-77182359 | None:intergenic |
| TTATGCAAAGGACTTAATAG+AGG | 0.486073 | 1_1:+77181841 | Msa0045310:CDS |
| TTCTTTGCTTGTGGAGATGG+TGG | 0.486494 | 1_1:+77184043 | Msa0045310:CDS |
| ATTGTTGCCATGGGATCCTA+TGG | 0.488776 | 1_1:-77182759 | None:intergenic |
| AGAAGTATCAAAAGTACTAA+AGG | 0.492579 | 1_1:+77183623 | Msa0045310:CDS |
| TTTCCTATCCCTTTGTACAA+TGG | 0.496607 | 1_1:-77181672 | None:intergenic |
| AATAGCAACACCGATGCATA+TGG | 0.504570 | 1_1:-77182278 | None:intergenic |
| TCCCGGGAACTAACAAAAGA+AGG | 0.508227 | 1_1:+77183915 | Msa0045310:CDS |
| AAAGAAGTGAAAGCAGCAAA+AGG | 0.520550 | 1_1:-77184026 | None:intergenic |
| GATTGTTCGAGAGTGTTTCA+AGG | 0.521322 | 1_1:-77183683 | None:intergenic |
| TATAGATCGCGGATTGACCT+TGG | 0.524660 | 1_1:-77183573 | None:intergenic |
| GGATTAGGAACTCTGTCAGC+AGG | 0.527709 | 1_1:+77181862 | Msa0045310:CDS |
| GTGGTCATGGAGTTTACAGT+AGG | 0.539836 | 1_1:+77181726 | Msa0045310:CDS |
| GAACCATTGTACAAAGGGAT+AGG | 0.540699 | 1_1:+77181669 | Msa0045310:CDS |
| TACTCTGCTCCTCCATAAGA+AGG | 0.541093 | 1_1:-77184200 | None:intergenic |
| TACACTGTCGTAGCACTGCA+TGG | 0.544060 | 1_1:+77182817 | Msa0045310:CDS |
| CAAAGATGATCCAAGAAAAG+TGG | 0.544252 | 1_1:+77181590 | Msa0045310:CDS |
| GTCATAGTCTTACTCAGTTG+TGG | 0.547431 | 1_1:-77183963 | None:intergenic |
| CACTTTAGAGAGTTCAGAGA+TGG | 0.548017 | 1_1:+77184116 | Msa0045310:CDS |
| TAAAAGTGATTATTGTTCCC+CGG | 0.551200 | 1_1:+77183869 | Msa0045310:CDS |
| ATTGTTCGAGAGTGTTTCAA+GGG | 0.555202 | 1_1:-77183682 | None:intergenic |
| TCTTTCGATTTGGTTCCGAC+CGG | 0.560225 | 1_1:-77183888 | None:intergenic |
| TTTCGATTTGGTTCCGACCG+GGG | 0.564436 | 1_1:-77183886 | None:intergenic |
| GTAGTGCTTCTGAGAACTCA+AGG | 0.566975 | 1_1:-77184004 | None:intergenic |
| AATGACTTGCCTTCTTATGG+AGG | 0.579796 | 1_1:+77184191 | Msa0045310:CDS |
| GCACTTGTAAATAGGATCCT+CGG | 0.579858 | 1_1:-77182565 | None:intergenic |
| AGTGATTATTGTTCCCCGGT+CGG | 0.585253 | 1_1:+77183873 | Msa0045310:CDS |
| GAGTATCTTGGAGATGCACC+TGG | 0.590500 | 1_1:+77181904 | Msa0045310:CDS |
| GAGCTTCTGCTACTTATGTG+AGG | 0.592460 | 1_1:+77182128 | Msa0045310:CDS |
| CGCGTCTCTACCATATGCAT+CGG | 0.595667 | 1_1:+77182268 | Msa0045310:CDS |
| CTAATGGAACCATTGTACAA+AGG | 0.603339 | 1_1:+77181663 | Msa0045310:CDS |
| GATACTCAAGAAGCTGCCAT+AGG | 0.605358 | 1_1:+77182743 | Msa0045310:CDS |
| TAATGATGCAGTTACTGTTG+TGG | 0.607091 | 1_1:+77182497 | Msa0045310:intron |
| CCCGGGAACTAACAAAAGAA+GGG | 0.610231 | 1_1:+77183916 | Msa0045310:CDS |
| ACACTGTCGTAGCACTGCAT+GGG | 0.611183 | 1_1:+77182818 | Msa0045310:CDS |
| GAAGCTGCCATAGGATCCCA+TGG | 0.613495 | 1_1:+77182752 | Msa0045310:CDS |
| GAACTAACAAAAGAAGGGCA+AGG | 0.617174 | 1_1:+77183921 | Msa0045310:CDS |
| TGGCAACAATATGCAAAAGT+CGG | 0.625675 | 1_1:+77182772 | Msa0045310:CDS |
| CAAATCGAAAGAGCACTCCC+GGG | 0.635370 | 1_1:+77183899 | Msa0045310:CDS |
| AAGAATCTTTGTATAGATCG+CGG | 0.642132 | 1_1:-77183584 | None:intergenic |
| CTCGAGCCTAGTAAAAGCTG+CGG | 0.662648 | 1_1:-77183750 | None:intergenic |
| TGTTGTGGCTGTCATGACTG+TGG | 0.668854 | 1_1:+77181701 | Msa0045310:CDS |
| AAATGAAGATGATTCATCCG+AGG | 0.672197 | 1_1:+77182548 | Msa0045310:CDS |
| AGCTCAAAATATTATCTACG+CGG | 0.698557 | 1_1:-77182234 | None:intergenic |
| TATGGCTCATGAAGACACCA+AGG | 0.726749 | 1_1:+77183556 | Msa0045310:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAATTCTTCTTTATATA+AGG | - | chr1_1:77182160-77182179 | None:intergenic | 15.0% |
| !!! | TATTATTTTCTTCAACAAAA+GGG | - | chr1_1:77182648-77182667 | None:intergenic | 15.0% |
| !!! | ATATTATTTTCTTCAACAAA+AGG | - | chr1_1:77182649-77182668 | None:intergenic | 15.0% |
| !! | AGAAAATAATATCATGAAAT+TGG | + | chr1_1:77182657-77182676 | Msa0045310:intron | 15.0% |
| !!! | TGTTATATTAAAGATTTTGA+GGG | - | chr1_1:77183026-77183045 | None:intergenic | 15.0% |
| !! | TACACATTTCATTATTAAAT+TGG | + | chr1_1:77183452-77183471 | Msa0045310:intron | 15.0% |
| !! | ATAAAGAAGAATTATGACTA+TGG | + | chr1_1:77182163-77182182 | Msa0045310:CDS | 20.0% |
| !! | TGATACAATCATCAAATTAA+AGG | - | chr1_1:77182209-77182228 | None:intergenic | 20.0% |
| !!! | TAATGATGAAAAAGCTTTTA+TGG | + | chr1_1:77182438-77182457 | Msa0045310:intron | 20.0% |
| !!! | AGGTACTAAATTATCTATTT+TGG | + | chr1_1:77182860-77182879 | Msa0045310:intron | 20.0% |
| !!! | TTACTAGAAAAGTTTCTTTT+GGG | - | chr1_1:77182922-77182941 | None:intergenic | 20.0% |
| !!! | GCTTTTTATTTAGATTTTTG+AGG | - | chr1_1:77182996-77183015 | None:intergenic | 20.0% |
| !!! | GTGTTATATTAAAGATTTTG+AGG | - | chr1_1:77183027-77183046 | None:intergenic | 20.0% |
| !!! | TGAGCTTTTTTTAGTATTGT+TGG | - | chr1_1:77181487-77181506 | None:intergenic | 25.0% |
| ! | TGTTTCATTGTTGTATCTAA+TGG | + | chr1_1:77181647-77181666 | Msa0045310:CDS | 25.0% |
| ! | AATCATAATCAATACGTATG+AGG | - | chr1_1:77181809-77181828 | None:intergenic | 25.0% |
| !!! | GCATTTTTAATTGAGTATCT+TGG | + | chr1_1:77181892-77181911 | Msa0045310:CDS | 25.0% |
| ! | AATGGTTAAGCAAAACATTA+GGG | - | chr1_1:77182087-77182106 | None:intergenic | 25.0% |
| !! | TATTTTACCTTCTATAGAGT+TGG | - | chr1_1:77182389-77182408 | None:intergenic | 25.0% |
| ! | GTATCAATCTATATAACTGA+TGG | + | chr1_1:77182468-77182487 | Msa0045310:intron | 25.0% |
| ! | CTTATCATATAGAATTGAAC+AGG | + | chr1_1:77182696-77182715 | Msa0045310:intron | 25.0% |
| !! | GTTACTAGAAAAGTTTCTTT+TGG | - | chr1_1:77182923-77182942 | None:intergenic | 25.0% |
| !!! | TTTTCTAGTAACTAGAGAAT+GGG | + | chr1_1:77182931-77182950 | Msa0045310:intron | 25.0% |
| ! | TCAGAAAAATTGCTTTAACA+TGG | + | chr1_1:77183241-77183260 | Msa0045310:intron | 25.0% |
| ! | GTTATGTTATTGATATCACA+TGG | + | chr1_1:77183323-77183342 | Msa0045310:intron | 25.0% |
| !! | TCATTGATTATTATGTAGCT+AGG | + | chr1_1:77183369-77183388 | Msa0045310:intron | 25.0% |
| ! | CGATATATGCATTTAACATA+TGG | + | chr1_1:77183538-77183557 | Msa0045310:intron | 25.0% |
| !!! | AGAAGTATCAAAAGTACTAA+AGG | + | chr1_1:77183623-77183642 | Msa0045310:CDS | 25.0% |
| !!! | ATCAAAAGTACTAAAGGTTA+TGG | + | chr1_1:77183629-77183648 | Msa0045310:CDS | 25.0% |
| ! | TCATCAATCTTGAAAAAGTT+GGG | - | chr1_1:77183822-77183841 | None:intergenic | 25.0% |
| ! | TTCATCAATCTTGAAAAAGT+TGG | - | chr1_1:77183823-77183842 | None:intergenic | 25.0% |
| ! | TATGGATAATGTTGAAGAAT+TGG | + | chr1_1:77184082-77184101 | Msa0045310:CDS | 25.0% |
| ! | ATGGATAATGTTGAAGAATT+GGG | + | chr1_1:77184083-77184102 | Msa0045310:CDS | 25.0% |
| CTAAAAAAAGCTCAAGCTAT+TGG | + | chr1_1:77181493-77181512 | Msa0045310:CDS | 30.0% | |
| GATAAAGTGAAAAGATTTCC+AGG | + | chr1_1:77181537-77181556 | Msa0045310:CDS | 30.0% | |
| GTTTAGTGAAAAGGACAATT+TGG | + | chr1_1:77181559-77181578 | Msa0045310:CDS | 30.0% | |
| AAAAGGACAATTTGGAAAGT+TGG | + | chr1_1:77181567-77181586 | Msa0045310:CDS | 30.0% | |
| !! | AATGAATGAACCACTTTTCT+TGG | - | chr1_1:77181603-77181622 | None:intergenic | 30.0% |
| TAATGGAACCATTGTACAAA+GGG | + | chr1_1:77181664-77181683 | Msa0045310:CDS | 30.0% | |
| !! | TACGTATTGATTATGATTGC+AGG | + | chr1_1:77181811-77181830 | Msa0045310:intron | 30.0% |
| !! | ACGTATTGATTATGATTGCA+GGG | + | chr1_1:77181812-77181831 | Msa0045310:intron | 30.0% |
| TCTATTAAGTCCTTTGCATA+AGG | - | chr1_1:77181842-77181861 | None:intergenic | 30.0% | |
| TTATGCAAAGGACTTAATAG+AGG | + | chr1_1:77181841-77181860 | Msa0045310:CDS | 30.0% | |
| AAAGGACTTAATAGAGGATT+AGG | + | chr1_1:77181847-77181866 | Msa0045310:CDS | 30.0% | |
| CAATGGTTAAGCAAAACATT+AGG | - | chr1_1:77182088-77182107 | None:intergenic | 30.0% | |
| ! | CTAATGTTTTGCTTAACCAT+TGG | + | chr1_1:77182086-77182105 | Msa0045310:intron | 30.0% |
| AGCTCAAAATATTATCTACG+CGG | - | chr1_1:77182237-77182256 | None:intergenic | 30.0% | |
| !! | CGTAGATAATATTTTGAGCT+TGG | + | chr1_1:77182237-77182256 | Msa0045310:CDS | 30.0% |
| CCAGTTTGGAAATACAAATA+GGG | - | chr1_1:77182317-77182336 | None:intergenic | 30.0% | |
| ACCAGTTTGGAAATACAAAT+AGG | - | chr1_1:77182318-77182337 | None:intergenic | 30.0% | |
| !! | TTGATATGGTGGATTTATGA+AGG | - | chr1_1:77182351-77182370 | None:intergenic | 30.0% |
| !!! | TGTTTTAGACTCTAAAGCTA+AGG | + | chr1_1:77182596-77182615 | Msa0045310:CDS | 30.0% |
| !! | CTTTTCTAGTAACTAGAGAA+TGG | + | chr1_1:77182930-77182949 | Msa0045310:intron | 30.0% |
| ATAACTAGCTAGAGATATAG+TGG | - | chr1_1:77183203-77183222 | None:intergenic | 30.0% | |
| CAATAACATAACAGATTGAC+AGG | - | chr1_1:77183315-77183334 | None:intergenic | 30.0% | |
| !! | GCTATTGACTTCTCAATTAT+TGG | + | chr1_1:77183474-77183493 | Msa0045310:intron | 30.0% |
| AAGAATCTTTGTATAGATCG+CGG | - | chr1_1:77183587-77183606 | None:intergenic | 30.0% | |
| TAAAAGTGATTATTGTTCCC+CGG | + | chr1_1:77183869-77183888 | Msa0045310:CDS | 30.0% | |
| ! | TTCACAGCTGTATTCATTTT+TGG | - | chr1_1:77184173-77184192 | None:intergenic | 30.0% |
| GATTTCCAGGTTTAGTGAAA+AGG | + | chr1_1:77181550-77181569 | Msa0045310:CDS | 35.0% | |
| ! | ATTGTCCTTTTCACTAAACC+TGG | - | chr1_1:77181558-77181577 | None:intergenic | 35.0% |
| CAAAGATGATCCAAGAAAAG+TGG | + | chr1_1:77181590-77181609 | Msa0045310:CDS | 35.0% | |
| GTGGTTCATTCATTGAAAGT+TGG | + | chr1_1:77181609-77181628 | Msa0045310:CDS | 35.0% | |
| CTAATGGAACCATTGTACAA+AGG | + | chr1_1:77181663-77181682 | Msa0045310:CDS | 35.0% | |
| TTTCCTATCCCTTTGTACAA+TGG | - | chr1_1:77181675-77181694 | None:intergenic | 35.0% | |
| GATAGGAAAAAATGCTGTTG+TGG | + | chr1_1:77181686-77181705 | Msa0045310:CDS | 35.0% | |
| !! | CGTATTGATTATGATTGCAG+GGG | + | chr1_1:77181813-77181832 | Msa0045310:intron | 35.0% |
| !! | GTATTGATTATGATTGCAGG+GGG | + | chr1_1:77181814-77181833 | Msa0045310:intron | 35.0% |
| !!! | ATTTTTCGAGCGGTTTTCAT+TGG | + | chr1_1:77181931-77181950 | Msa0045310:CDS | 35.0% |
| !!! | GTTTTGAGTTTTCTGTCTTG+TGG | + | chr1_1:77182052-77182071 | Msa0045310:intron | 35.0% |
| CTTAACCATTGGATCATTGT+TGG | + | chr1_1:77182097-77182116 | Msa0045310:intron | 35.0% | |
| CAAAACCAACAATGATCCAA+TGG | - | chr1_1:77182105-77182124 | None:intergenic | 35.0% | |
| CCCTATTTGTATTTCCAAAC+TGG | + | chr1_1:77182314-77182333 | Msa0045310:CDS | 35.0% | |
| TTTGTATTTCCAAACTGGTC+AGG | + | chr1_1:77182319-77182338 | Msa0045310:CDS | 35.0% | |
| ! | TAAGCCTTCAAGCTTTGATA+TGG | - | chr1_1:77182365-77182384 | None:intergenic | 35.0% |
| TAATGATGCAGTTACTGTTG+TGG | + | chr1_1:77182497-77182516 | Msa0045310:intron | 35.0% | |
| AAATGAAGATGATTCATCCG+AGG | + | chr1_1:77182548-77182567 | Msa0045310:CDS | 35.0% | |
| !! | ATATCATGAAATTGGTGCTG+TGG | + | chr1_1:77182665-77182684 | Msa0045310:intron | 35.0% |
| ! | CTTTTGCATATTGTTGCCAT+GGG | - | chr1_1:77182771-77182790 | None:intergenic | 35.0% |
| ! | ACTTTTGCATATTGTTGCCA+TGG | - | chr1_1:77182772-77182791 | None:intergenic | 35.0% |
| TGGCAACAATATGCAAAAGT+CGG | + | chr1_1:77182772-77182791 | Msa0045310:CDS | 35.0% | |
| TAGAACTCTCATTGCATTCT+CGG | - | chr1_1:77183088-77183107 | None:intergenic | 35.0% | |
| ! | TGGTTCTGTAGCTTTCTATA+AGG | + | chr1_1:77183261-77183280 | Msa0045310:intron | 35.0% |
| !! | ATTGTTCGAGAGTGTTTCAA+GGG | - | chr1_1:77183685-77183704 | None:intergenic | 35.0% |
| ! | AAGGACAGAAAAAGGTTTTG+AGG | + | chr1_1:77183940-77183959 | Msa0045310:CDS | 35.0% |
| AAAGAAGTGAAAGCAGCAAA+AGG | - | chr1_1:77184029-77184048 | None:intergenic | 35.0% | |
| GGCAAAACTAGATCATGTTA+TGG | + | chr1_1:77184064-77184083 | Msa0045310:CDS | 35.0% | |
| GAACCATTGTACAAAGGGAT+AGG | + | chr1_1:77181669-77181688 | Msa0045310:CDS | 40.0% | |
| TCATGGAGTTTACAGTAGGT+AGG | + | chr1_1:77181730-77181749 | Msa0045310:intron | 40.0% | |
| AACTCTGTCAGCAGGATTAT+TGG | + | chr1_1:77181870-77181889 | Msa0045310:CDS | 40.0% | |
| !!! | GGTGCTGCAGTTTTTGTTTT+AGG | + | chr1_1:77181952-77181971 | Msa0045310:CDS | 40.0% |
| !!! | TGGATCATTGTTGGTTTTGC+AGG | + | chr1_1:77182106-77182125 | Msa0045310:intron | 40.0% |
| AATAGCAACACCGATGCATA+TGG | - | chr1_1:77182281-77182300 | None:intergenic | 40.0% | |
| TCCACCATATCAAAGCTTGA+AGG | + | chr1_1:77182358-77182377 | Msa0045310:CDS | 40.0% | |
| GCACTTGTAAATAGGATCCT+CGG | - | chr1_1:77182568-77182587 | None:intergenic | 40.0% | |
| GCTTCGTAGCACTTGTAAAT+AGG | - | chr1_1:77182576-77182595 | None:intergenic | 40.0% | |
| AACAGGCAATGCAAGCTAAT+TGG | + | chr1_1:77182713-77182732 | Msa0045310:intron | 40.0% | |
| ACAGGCAATGCAAGCTAATT+GGG | + | chr1_1:77182714-77182733 | Msa0045310:intron | 40.0% | |
| ! | GTGTCTTCAGTCTGAAATTC+AGG | + | chr1_1:77182840-77182859 | Msa0045310:CDS | 40.0% |
| AACAGATTGACAGGTAACCT+TGG | - | chr1_1:77183306-77183325 | None:intergenic | 40.0% | |
| !! | GATTGTTCGAGAGTGTTTCA+AGG | - | chr1_1:77183686-77183705 | None:intergenic | 40.0% |
| CAATCTCAACGAAGCTTTAC+AGG | + | chr1_1:77183701-77183720 | Msa0045310:CDS | 40.0% | |
| TTGAAAAAGTTGGGCGTTCT+GGG | - | chr1_1:77183813-77183832 | None:intergenic | 40.0% | |
| GAACTAACAAAAGAAGGGCA+AGG | + | chr1_1:77183921-77183940 | Msa0045310:CDS | 40.0% | |
| ! | GTCATAGTCTTACTCAGTTG+TGG | - | chr1_1:77183966-77183985 | None:intergenic | 40.0% |
| TGCTTTCACTTCTTTGCTTG+TGG | + | chr1_1:77184034-77184053 | Msa0045310:CDS | 40.0% | |
| ! | CACTTTAGAGAGTTCAGAGA+TGG | + | chr1_1:77184116-77184135 | Msa0045310:CDS | 40.0% |
| ! | GTGAATGACTTGCCTTCTTA+TGG | + | chr1_1:77184188-77184207 | Msa0045310:CDS | 40.0% |
| ! | AATGACTTGCCTTCTTATGG+AGG | + | chr1_1:77184191-77184210 | Msa0045310:CDS | 40.0% |
| GTGGTCATGGAGTTTACAGT+AGG | + | chr1_1:77181726-77181745 | Msa0045310:CDS | 45.0% | |
| !!! | ACCTGGTCGTATTTTTCGAG+CGG | + | chr1_1:77181921-77181940 | Msa0045310:CDS | 45.0% |
| ! | TGAGTTTTCTGTCTTGTGGC+TGG | + | chr1_1:77182056-77182075 | Msa0045310:intron | 45.0% |
| ! | GAGCTTCTGCTACTTATGTG+AGG | + | chr1_1:77182128-77182147 | Msa0045310:CDS | 45.0% |
| ! | GCCTTCAAGCTTTGATATGG+TGG | - | chr1_1:77182362-77182381 | None:intergenic | 45.0% |
| GGCTTAGCCAACTCTATAGA+AGG | + | chr1_1:77182379-77182398 | Msa0045310:CDS | 45.0% | |
| TGGCAGCTTCTTGAGTATCT+TGG | - | chr1_1:77182742-77182761 | None:intergenic | 45.0% | |
| GATACTCAAGAAGCTGCCAT+AGG | + | chr1_1:77182743-77182762 | Msa0045310:CDS | 45.0% | |
| ATTGTTGCCATGGGATCCTA+TGG | - | chr1_1:77182762-77182781 | None:intergenic | 45.0% | |
| CATCTCATCATTGAGCTCCA+AGG | + | chr1_1:77183286-77183305 | Msa0045310:intron | 45.0% | |
| TATGGCTCATGAAGACACCA+AGG | + | chr1_1:77183556-77183575 | Msa0045310:intron | 45.0% | |
| ! | TATAGATCGCGGATTGACCT+TGG | - | chr1_1:77183576-77183595 | None:intergenic | 45.0% |
| AGGTTATGGCCAACAGCATA+AGG | + | chr1_1:77183643-77183662 | Msa0045310:CDS | 45.0% | |
| ACGCTTGTTCCTTATGCTGT+TGG | - | chr1_1:77183655-77183674 | None:intergenic | 45.0% | |
| !!! | TGGGAGTTTTGGGGGTTATA+GGG | - | chr1_1:77183794-77183813 | None:intergenic | 45.0% |
| CTTGAAAAAGTTGGGCGTTC+TGG | - | chr1_1:77183814-77183833 | None:intergenic | 45.0% | |
| AGTGATTATTGTTCCCCGGT+CGG | + | chr1_1:77183873-77183892 | Msa0045310:CDS | 45.0% | |
| !! | TCTTTCGATTTGGTTCCGAC+CGG | - | chr1_1:77183891-77183910 | None:intergenic | 45.0% |
| TCCCGGGAACTAACAAAAGA+AGG | + | chr1_1:77183915-77183934 | Msa0045310:CDS | 45.0% | |
| ! | CCCTTCTTTTGTTAGTTCCC+GGG | - | chr1_1:77183919-77183938 | None:intergenic | 45.0% |
| CCCGGGAACTAACAAAAGAA+GGG | + | chr1_1:77183916-77183935 | Msa0045310:CDS | 45.0% | |
| ! | GCCCTTCTTTTGTTAGTTCC+CGG | - | chr1_1:77183920-77183939 | None:intergenic | 45.0% |
| AGAAGGGCAAGGACAGAAAA+AGG | + | chr1_1:77183932-77183951 | Msa0045310:CDS | 45.0% | |
| ! | GTAGTGCTTCTGAGAACTCA+AGG | - | chr1_1:77184007-77184026 | None:intergenic | 45.0% |
| CACTTCTTTGCTTGTGGAGA+TGG | + | chr1_1:77184040-77184059 | Msa0045310:CDS | 45.0% | |
| TTCTTTGCTTGTGGAGATGG+TGG | + | chr1_1:77184043-77184062 | Msa0045310:CDS | 45.0% | |
| TACTCTGCTCCTCCATAAGA+AGG | - | chr1_1:77184203-77184222 | None:intergenic | 45.0% | |
| TGTTGTGGCTGTCATGACTG+TGG | + | chr1_1:77181701-77181720 | Msa0045310:CDS | 50.0% | |
| CATGACTGTGGTTGTGGTCA+TGG | + | chr1_1:77181713-77181732 | Msa0045310:CDS | 50.0% | |
| GGATTAGGAACTCTGTCAGC+AGG | + | chr1_1:77181862-77181881 | Msa0045310:CDS | 50.0% | |
| GAGTATCTTGGAGATGCACC+TGG | + | chr1_1:77181904-77181923 | Msa0045310:CDS | 50.0% | |
| ACCGCTCGAAAAATACGACC+AGG | - | chr1_1:77181925-77181944 | None:intergenic | 50.0% | |
| CGCGTCTCTACCATATGCAT+CGG | + | chr1_1:77182268-77182287 | Msa0045310:CDS | 50.0% | |
| AGGTCTTCTCCTGACCAGTT+TGG | - | chr1_1:77182331-77182350 | None:intergenic | 50.0% | |
| TACACTGTCGTAGCACTGCA+TGG | + | chr1_1:77182817-77182836 | Msa0045310:CDS | 50.0% | |
| ACACTGTCGTAGCACTGCAT+GGG | + | chr1_1:77182818-77182837 | Msa0045310:CDS | 50.0% | |
| ! | TCGCAACCGCAGCTTTTACT+AGG | + | chr1_1:77183744-77183763 | Msa0045310:CDS | 50.0% |
| CTCGAGCCTAGTAAAAGCTG+CGG | - | chr1_1:77183753-77183772 | None:intergenic | 50.0% | |
| !!! | CTGGGAGTTTTGGGGGTTAT+AGG | - | chr1_1:77183795-77183814 | None:intergenic | 50.0% |
| !!! | TTGGGCGTTCTGGGAGTTTT+GGG | - | chr1_1:77183804-77183823 | None:intergenic | 50.0% |
| !! | TTTCGATTTGGTTCCGACCG+GGG | - | chr1_1:77183889-77183908 | None:intergenic | 50.0% |
| !! | CTTTCGATTTGGTTCCGACC+GGG | - | chr1_1:77183890-77183909 | None:intergenic | 50.0% |
| !! | CCAAATCGAAAGAGCACTCC+CGG | + | chr1_1:77183898-77183917 | Msa0045310:CDS | 50.0% |
| !! | CAAATCGAAAGAGCACTCCC+GGG | + | chr1_1:77183899-77183918 | Msa0045310:CDS | 50.0% |
| GGCTGTCATGACTGTGGTTG+TGG | + | chr1_1:77181707-77181726 | Msa0045310:CDS | 55.0% | |
| GCAGGGGGAACCTTATGCAA+AGG | + | chr1_1:77181829-77181848 | Msa0045310:intron | 55.0% | |
| GAAGCTGCCATAGGATCCCA+TGG | + | chr1_1:77182752-77182771 | Msa0045310:CDS | 55.0% | |
| !!! | TGGGCGTTCTGGGAGTTTTG+GGG | - | chr1_1:77183803-77183822 | None:intergenic | 55.0% |
| !!! | GTTGGGCGTTCTGGGAGTTT+TGG | - | chr1_1:77183805-77183824 | None:intergenic | 55.0% |
| !! | CCGGGAGTGCTCTTTCGATT+TGG | - | chr1_1:77183901-77183920 | None:intergenic | 55.0% |
| !!! | GGGCGTTCTGGGAGTTTTGG+GGG | - | chr1_1:77183802-77183821 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 77181471 | 77184223 | 77181471 | ID=Msa0045310;Name=Msa0045310 |
| chr1_1 | mRNA | 77181471 | 77184223 | 77181471 | ID=Msa0045310-mRNA-1;Parent=Msa0045310;Name=Msa0045310-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|6|0|536 |
| chr1_1 | exon | 77181471 | 77181747 | 77181471 | ID=Msa0045310-mRNA-1:exon:26302;Parent=Msa0045310-mRNA-1 |
| chr1_1 | exon | 77181833 | 77181973 | 77181833 | ID=Msa0045310-mRNA-1:exon:26303;Parent=Msa0045310-mRNA-1 |
| chr1_1 | exon | 77182128 | 77182400 | 77182128 | ID=Msa0045310-mRNA-1:exon:26304;Parent=Msa0045310-mRNA-1 |
| chr1_1 | exon | 77182508 | 77182629 | 77182508 | ID=Msa0045310-mRNA-1:exon:26305;Parent=Msa0045310-mRNA-1 |
| chr1_1 | exon | 77182718 | 77182861 | 77182718 | ID=Msa0045310-mRNA-1:exon:26306;Parent=Msa0045310-mRNA-1 |
| chr1_1 | exon | 77183570 | 77184223 | 77183570 | ID=Msa0045310-mRNA-1:exon:26307;Parent=Msa0045310-mRNA-1 |
| chr1_1 | CDS | 77181471 | 77181747 | 77181471 | ID=Msa0045310-mRNA-1:cds;Parent=Msa0045310-mRNA-1 |
| chr1_1 | CDS | 77181833 | 77181973 | 77181833 | ID=Msa0045310-mRNA-1:cds;Parent=Msa0045310-mRNA-1 |
| chr1_1 | CDS | 77182128 | 77182400 | 77182128 | ID=Msa0045310-mRNA-1:cds;Parent=Msa0045310-mRNA-1 |
| chr1_1 | CDS | 77182508 | 77182629 | 77182508 | ID=Msa0045310-mRNA-1:cds;Parent=Msa0045310-mRNA-1 |
| chr1_1 | CDS | 77182718 | 77182861 | 77182718 | ID=Msa0045310-mRNA-1:cds;Parent=Msa0045310-mRNA-1 |
| chr1_1 | CDS | 77183570 | 77184223 | 77183570 | ID=Msa0045310-mRNA-1:cds;Parent=Msa0045310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
