AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0116090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116090 MtrunA17_Chr1g0211691 86.856 951 88 6 1 915 1 950 0.0 1562
Msa0116090 MtrunA17_Chr1g0211711 70.572 1067 187 15 42 1003 7 1051 0.0 1439
Msa0116090 MtrunA17_Chr1g0183311 68.471 850 178 8 234 1003 43 882 0.0 1126
Msa0116090 MtrunA17_Chr5g0426961 67.230 769 198 8 270 1002 84 834 0.0 1020
Msa0116090 MtrunA17_Chr1g0211661 71.088 671 151 7 304 943 207 865 0.0 965
Msa0116090 MtrunA17_Chr1g0211661 80.833 120 23 0 1 120 1 120 5.82e-49 188
Msa0116090 MtrunA17_Chr5g0420361 62.908 674 199 12 385 1012 138 806 0.0 827
Msa0116090 MtrunA17_Chr6g0472441 61.596 664 170 14 385 996 80 710 0.0 786
Msa0116090 MtrunA17_Chr5g0448301 61.567 536 181 6 379 909 93 608 0.0 630
Msa0116090 MtrunA17_Chr5g0448301 38.857 175 58 8 26 189 7 143 5.82e-12 69.7
Msa0116090 MtrunA17_Chr7g0275771 40.741 945 402 26 184 1008 24 930 0.0 615
Msa0116090 MtrunA17_Chr4g0075261 43.792 749 321 17 311 1000 157 864 0.0 578
Msa0116090 MtrunA17_Chr2g0289121 44.986 718 314 14 316 1000 150 819 0.0 558
Msa0116090 MtrunA17_Chr1g0192011 35.568 731 390 15 322 1004 267 964 8.65e-138 439
Msa0116090 MtrunA17_Chr1g0147021 45.229 524 261 9 316 834 864 1366 1.78e-130 433
Msa0116090 MtrunA17_Chr1g0147021 55.975 159 48 2 875 1011 1551 1709 5.78e-44 174
Msa0116090 MtrunA17_Chr2g0289031 49.877 405 162 5 617 1000 9 393 4.81e-120 373
Msa0116090 MtrunA17_Chr2g0281051 33.333 753 407 17 322 992 207 946 2.02e-118 387
Msa0116090 MtrunA17_Chr8g0364421 48.828 256 88 4 432 675 5 229 1.21e-67 226
Msa0116090 MtrunA17_Chr7g0231061 59.574 188 69 2 670 857 8 188 2.70e-63 213
Msa0116090 MtrunA17_Chr4g0048531 41.806 299 159 6 532 824 727 1016 2.23e-62 231
Msa0116090 MtrunA17_Chr4g0048531 45.890 146 61 2 874 1001 1132 1277 8.86e-33 137
Msa0116090 MtrunA17_Chr4g0048531 36.585 164 97 3 322 479 260 422 2.15e-26 117
Msa0116090 MtrunA17_Chr8g0361381 55.080 187 80 2 612 798 26 208 5.79e-60 204
Msa0116090 MtrunA17_Chr6g0469821 70.748 147 36 2 1 147 1 140 3.59e-56 190
Msa0116090 MtrunA17_Chr8g0340381 65.476 168 39 3 711 878 36 184 2.43e-55 190
Msa0116090 MtrunA17_Chr1g0211701 96.667 90 3 0 915 1004 30 119 5.35e-54 185
Msa0116090 MtrunA17_Chr2g0289091 59.441 143 57 1 689 831 22 163 2.07e-47 175
Msa0116090 MtrunA17_Chr2g0289091 57.658 111 28 2 874 965 310 420 2.98e-31 127
Msa0116090 MtrunA17_Chr2g0289041 40.094 212 104 7 344 541 2 204 3.41e-39 144
Msa0116090 MtrunA17_Chr8g0364411 57.143 112 48 0 322 433 33 144 4.23e-36 134
Msa0116090 MtrunA17_Chr1g0211681 72.043 93 25 1 55 147 1 92 5.35e-33 122
Msa0116090 MtrunA17_Chr1g0211671 76.190 63 15 0 942 1004 15 77 1.14e-27 108
Msa0116090 MtrunA17_Chr3g0119761 66.234 77 26 0 784 860 55 131 4.77e-25 101
Msa0116090 MtrunA17_Chr8g0361391 48.624 109 38 2 853 943 29 137 2.81e-24 100
Msa0116090 MtrunA17_Chr2g0289101 39.062 128 60 4 454 568 8 130 1.86e-16 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116090 AT1G11950.1 47.566 719 310 13 318 1004 189 872 0.0 634
Msa0116090 AT1G11950.3 47.566 719 310 13 318 1004 189 872 0.0 634
Msa0116090 AT1G62310.1 47.000 700 316 14 321 989 208 883 0.0 619
Msa0116090 AT4G00990.1 41.591 767 343 17 322 1000 80 829 1.43e-179 544
Msa0116090 AT1G11950.2 46.142 648 282 14 318 933 189 801 4.61e-177 536
Msa0116090 AT3G07610.1 53.893 488 185 6 524 992 417 883 2.69e-167 518
Msa0116090 AT3G07610.1 40.553 217 126 2 292 508 127 340 2.35e-46 181
Msa0116090 AT3G07610.3 51.282 507 191 7 524 992 417 905 1.25e-158 496
Msa0116090 AT3G07610.3 40.553 217 126 2 292 508 127 340 2.55e-46 181
Msa0116090 AT4G00990.2 40.678 708 315 17 322 941 80 770 9.05e-154 475
Msa0116090 AT4G00990.3 40.506 711 318 17 322 944 80 773 1.02e-153 475
Msa0116090 AT1G09060.2 32.603 730 420 17 315 1004 197 894 2.04e-112 370
Msa0116090 AT1G09060.1 32.603 730 420 17 315 1004 197 894 2.04e-112 370
Msa0116090 AT1G09060.4 32.603 730 420 17 315 1004 211 908 2.73e-112 370
Msa0116090 AT1G09060.3 32.603 730 420 17 315 1004 211 908 2.73e-112 370
Msa0116090 AT3G07610.2 56.940 281 114 2 524 804 417 690 9.76e-97 323
Msa0116090 AT3G07610.2 40.553 217 126 2 292 508 127 340 3.99e-46 178
Msa0116090 AT4G21430.1 28.786 733 431 14 316 999 221 911 4.24e-88 303

Find 222 sgRNAs with CRISPR-Local

Find 742 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATAAAGGTTATTCTTTA+AGG 0.076090 1_3:-34977464 Msa0116090:CDS
GGCCTCCTTCTAATTTATTT+AGG 0.135585 1_3:-34974246 Msa0116090:CDS
TGTCTTGCTCAAGGTGCTTT+TGG 0.146606 1_3:+34973517 None:intergenic
TTGCTCGTCTGAAGCATTTA+TGG 0.202791 1_3:+34973425 None:intergenic
ATTGATCAGTGAAAAGAATT+TGG 0.212830 1_3:-34977508 Msa0116090:CDS
GCAAAATAGTGTTCGAGTTT+TGG 0.215510 1_3:-34973406 Msa0116090:CDS
TCATCCAATCGTCTTAAATA+TGG 0.224411 1_3:+34976558 None:intergenic
GTCGCCCAGATTGGCTTAAT+TGG 0.224414 1_3:-34974294 Msa0116090:CDS
TTTAAATATTCCTCCAATTC+AGG 0.228132 1_3:+34973324 None:intergenic
GCCTCCTTCTAATTTATTTA+GGG 0.243943 1_3:-34974245 Msa0116090:CDS
CTTCGTTGTGGGAAGCTTCT+AGG 0.247218 1_3:-34976012 Msa0116090:CDS
GCTTGATGTGGTTAACAAAT+TGG 0.261966 1_3:-34968959 Msa0116090:CDS
AATGTGCACCAATTCTTTAC+TGG 0.265399 1_3:-34974328 Msa0116090:CDS
CCACAATCATCATCGGCTTT+TGG 0.278197 1_3:+34975819 None:intergenic
CTGACATTGATGGCACATTA+AGG 0.293064 1_3:+34977229 None:intergenic
AGTACATTGCTGATAATTAC+AGG 0.293307 1_3:+34975507 None:intergenic
GGATCTGTATATTCTTTATA+CGG 0.299317 1_3:+34974181 None:intergenic
TACCAAGCACAAAACACTTT+TGG 0.300838 1_3:-34975418 Msa0116090:CDS
ATTCTTTAGATGGTGCTCTC+TGG 0.323154 1_3:-34973371 Msa0116090:CDS
GCATACCTTGTTTAAACAAT+TGG 0.324245 1_3:-34977151 Msa0116090:intron
AGAAGCATTTCAGAGAGTTT+AGG 0.334304 1_3:-34973302 Msa0116090:CDS
TGTCATTTCTCTGACATTGA+TGG 0.335478 1_3:+34977219 None:intergenic
GGAAGATTACGTGTCAGATT+TGG 0.338618 1_3:-34977748 Msa0116090:CDS
TTGGTGGACCTGTGGTTTAT+CGG 0.340425 1_3:+34970489 None:intergenic
CAAGGCCGTGATTATCTTCA+TGG 0.341964 1_3:-34975955 Msa0116090:CDS
AGAAGAAACCTGGTAGAAAA+AGG 0.348376 1_3:-34977614 Msa0116090:CDS
AATAGGGGTGATTCTTTAGA+TGG 0.356154 1_3:-34973381 Msa0116090:CDS
ATATCAGTTGCATTCCTAAC+AGG 0.357202 1_3:+34975657 None:intergenic
ACTAACTCAGAGATGCAATT+TGG 0.359225 1_3:+34975762 None:intergenic
GCAGTGTAGCATAGATAGTT+AGG 0.362275 1_3:-34978357 Msa0116090:five_prime_UTR
CTCGAACTCATGGTTGTTGT+TGG 0.375822 1_3:+34976611 None:intergenic
TTTGTGAGTGGTCAAGATTC+GGG 0.378563 1_3:-34975875 Msa0116090:CDS
TTGCAAACTTCCTCTCCCTT+TGG 0.380018 1_3:-34968918 Msa0116090:CDS
TGACAGTCACCATTGCTTGT+AGG 0.380366 1_3:-34971077 Msa0116090:intron
CTTTCCCTAAATAAATTAGA+AGG 0.387657 1_3:+34974241 None:intergenic
ATGACGTAAATTTAAAGCTC+TGG 0.387898 1_3:+34975572 None:intergenic
CGCGGAAACGGTACCGTTGA+AGG 0.390300 1_3:-34978180 Msa0116090:CDS
TGATCAGGAATGGATTCATC+TGG 0.392651 1_3:+34978239 None:intergenic
AAGAGGGTGAGGAAAAGAAT+TGG 0.395670 1_3:-34977854 Msa0116090:CDS
TGAGGCCAATTAAGCCAATC+TGG 0.400800 1_3:+34974289 None:intergenic
GTTCTTGTTTGAAGCCTGTT+AGG 0.405975 1_3:-34975671 Msa0116090:CDS
TCTGACTTGGTGAGGACAAC+CGG 0.410174 1_3:+34971001 None:intergenic
AAGATAAACTCAAACTCAAT+TGG 0.413084 1_3:+34975979 None:intergenic
TTCAATGGCACTGGAGCAAA+GGG 0.413215 1_3:-34975533 Msa0116090:CDS
CTTCCGGTTGTGTGAGAAAG+AGG 0.414317 1_3:-34977800 Msa0116090:CDS
TTCTTTAGATGGTGCTCTCT+GGG 0.419089 1_3:-34973370 Msa0116090:CDS
GAGAGAGGATGTACCTGAAT+TGG 0.421371 1_3:-34973337 Msa0116090:CDS
TATGGATTTGCTCAGGAGCT+TGG 0.422137 1_3:-34974076 Msa0116090:CDS
TTCTTTACTGGGTACACAAA+TGG 0.422160 1_3:-34974316 Msa0116090:CDS
AATGTACTTGAATGTACAAC+TGG 0.424187 1_3:-34975492 Msa0116090:CDS
ATTTGTGAGTGGTCAAGATT+CGG 0.429286 1_3:-34975876 Msa0116090:CDS
TCTTCCATATTTAAGACGAT+TGG 0.429788 1_3:-34976562 Msa0116090:CDS
TTGTGTACCCAGTAAAGAAT+TGG 0.434568 1_3:+34974320 None:intergenic
ACCTGCATTTGAAATTTCAA+TGG 0.434734 1_3:-34978330 Msa0116090:exon
AGAGGGTGAGGAAAAGAATT+GGG 0.444632 1_3:-34977853 Msa0116090:CDS
CAAAGTCACACTCACCGTTC+CGG 0.446960 1_3:-34978264 Msa0116090:CDS
AAGTTCTTTCAGCATATACT+TGG 0.448229 1_3:+34976584 None:intergenic
AATGTACAACTGGTTTAAGC+TGG 0.448278 1_3:-34975482 Msa0116090:CDS
GCCATTGAAATTTCAAATGC+AGG 0.448443 1_3:+34978329 None:intergenic
TGCCAATGTTGGCGCGGAAA+CGG 0.450167 1_3:-34978192 Msa0116090:CDS
AGCTGATGACATGGCAGCTA+AGG 0.454453 1_3:-34977979 Msa0116090:CDS
TTGCCTCTTTCTCACACAAC+CGG 0.456045 1_3:+34977797 None:intergenic
GAAGAAGAAGGTCATAATTG+AGG 0.456146 1_3:-34977691 Msa0116090:CDS
AAGAACTCGAAGAAACAATT+AGG 0.456155 1_3:-34975728 Msa0116090:CDS
CTGCTTTAAAGGAGAGCAAT+GGG 0.464779 1_3:+34973275 None:intergenic
TGAGAAAGAGGCAAAGGCCT+AGG 0.465093 1_3:-34977788 Msa0116090:CDS
AGATTGGCTTAATTGGCCTC+AGG 0.465478 1_3:-34974287 Msa0116090:CDS
GAGATAGAAGCAAAGAGAAA+AGG 0.470722 1_3:-34976516 Msa0116090:intron
CATGAAGATAATCACGGCCT+TGG 0.473194 1_3:+34975956 None:intergenic
TGCTTGTAGGAATCGAGCCT+TGG 0.475187 1_3:-34971064 Msa0116090:CDS
ACACAAATGGTCGCCCAGAT+TGG 0.475261 1_3:-34974303 Msa0116090:CDS
GACAGTTTATAGTTCGGAAG+AGG 0.480891 1_3:-34977871 Msa0116090:CDS
TGACGTAAATTTAAAGCTCT+GGG 0.482957 1_3:+34975573 None:intergenic
GTCAGAGAAATGACAAGGGC+AGG 0.483009 1_3:-34977211 Msa0116090:CDS
TATTGCTTATGGATTTGCTC+AGG 0.486399 1_3:-34974083 Msa0116090:CDS
AGGCAATTGATTGCTTAGAT+TGG 0.486412 1_3:-34975389 Msa0116090:CDS
TGTGGTTTATCGGAAGCTTA+CGG 0.487799 1_3:+34970499 None:intergenic
GTTTCTCGACGATCATGATC+AGG 0.488002 1_3:+34978224 None:intergenic
ACGATTGGATGAAGAACAAA+TGG 0.491089 1_3:-34976547 Msa0116090:CDS
ATGTGCACCAATTCTTTACT+GGG 0.492244 1_3:-34974327 Msa0116090:CDS
AGCTTTAAATTTACGTCATG+AGG 0.498076 1_3:-34975568 Msa0116090:CDS
TAGGAAGATTAAATCGTTGA+AGG 0.499461 1_3:-34977769 Msa0116090:CDS
TTACCTTTAGATTTCTGACT+TGG 0.503046 1_3:+34970988 None:intergenic
GACCTCCAACCTGTCCTTGG+TGG 0.508939 1_3:+34970473 None:intergenic
TTCAACGATTTAATCTTCCT+AGG 0.509264 1_3:+34977771 None:intergenic
GCTTGGTATTTCTTATCTGA+CGG 0.510840 1_3:+34975433 None:intergenic
ACCTGTCCTTGGTGGACCTG+TGG 0.512572 1_3:+34970481 None:intergenic
CTTGACCACTCACAAATCTC+AGG 0.514084 1_3:+34975882 None:intergenic
ACAGACCTCCAACCTGTCCT+TGG 0.514908 1_3:+34970470 None:intergenic
TTTCAATGGCACTGGAGCAA+AGG 0.515097 1_3:-34975534 Msa0116090:CDS
AGATTACGTGTCAGATTTGG+AGG 0.516385 1_3:-34977745 Msa0116090:CDS
GTTGTTGTGAGCTTCGTTGT+GGG 0.519321 1_3:-34976023 Msa0116090:CDS
GCTCCCTCTTGTCTTGCTCA+AGG 0.519343 1_3:+34973508 None:intergenic
TCGACGATCATGATCAGGAA+TGG 0.519620 1_3:+34978229 None:intergenic
TACCGTTTCCGCGCCAACAT+TGG 0.523494 1_3:+34978190 None:intergenic
TACGGAATTCCTCAGTCAAA+CGG 0.525984 1_3:+34970517 None:intergenic
GAGTTTGAGTTTATCTTCCA+AGG 0.526474 1_3:-34975973 Msa0116090:CDS
AAGACAGAGCAGAAGAAACC+TGG 0.528230 1_3:-34977624 Msa0116090:CDS
TTATAGTTCGGAAGAGGGTG+AGG 0.529955 1_3:-34977865 Msa0116090:CDS
CAGTGTAGCATAGATAGTTA+GGG 0.529972 1_3:-34978356 Msa0116090:five_prime_UTR
TTGTAGTCATGCATCAAGGT+TGG 0.532619 1_3:-34970579 Msa0116090:intron
GAAGTATGCTTCTCAGTTCG+AGG 0.532683 1_3:+34975787 None:intergenic
TATCGGTGTTAGAGCTGAAA+CGG 0.532983 1_3:-34978138 Msa0116090:CDS
GGAATGGATTCATCTGGGTC+CGG 0.533236 1_3:+34978245 None:intergenic
GAAGGTGCTGACGTGGAAGA+AGG 0.533445 1_3:-34977831 Msa0116090:CDS
TATATCAAATTCATAACCAA+AGG 0.537378 1_3:+34968902 None:intergenic
TGTATATTCTTTATACGGCA+AGG 0.541667 1_3:+34974186 None:intergenic
TGCCATGTCATCAGCTTCAA+CGG 0.544773 1_3:+34977986 None:intergenic
CCATTGCTCTCCTTTAAAGC+AGG 0.546741 1_3:-34973274 Msa0116090:intron
AACTCAGAGATGCAATTTGG+TGG 0.548310 1_3:+34975765 None:intergenic
GGCTCGATTCCTACAAGCAA+TGG 0.551570 1_3:+34971068 None:intergenic
TGAGATGCACAAAATGCAAA+CGG 0.552047 1_3:-34977184 Msa0116090:CDS
GCGTTGTTGAACAACGATGA+AGG 0.552811 1_3:-34978116 Msa0116090:CDS
CCTGCTTTAAAGGAGAGCAA+TGG 0.552913 1_3:+34973274 None:intergenic
GCCGATGATGATTGTGGTCA+TGG 0.553086 1_3:-34975813 Msa0116090:CDS
TTGTTGTCGACGGACGATGA+AGG 0.553268 1_3:-34978011 Msa0116090:CDS
ACTTGGAGAGCTCGAACTCA+TGG 0.555503 1_3:+34976601 None:intergenic
TCACCAAGTCAGAAATCTAA+AGG 0.555814 1_3:-34970991 Msa0116090:intron
AGAGGATGTACCTGAATTGG+AGG 0.558183 1_3:-34973334 Msa0116090:CDS
TGCATTTGAAATTTCAATGG+CGG 0.561423 1_3:-34978327 Msa0116090:exon
AGGTTAAGAATGCCTTTGAA+AGG 0.562396 1_3:+34974160 None:intergenic
ACCACAGGTCCACCAAGGAC+AGG 0.565099 1_3:-34970482 Msa0116090:CDS
ATTAAAGAGAAGAAGAGAGC+TGG 0.566428 1_3:-34977909 Msa0116090:CDS
GGAATACAAGAAGTTGTCAC+TGG 0.567927 1_3:+34975596 None:intergenic
GAATGATGAAGCTGAACAAG+AGG 0.569424 1_3:-34977658 Msa0116090:CDS
TGTTGTTGTGAGCTTCGTTG+TGG 0.569590 1_3:-34976024 Msa0116090:CDS
GCACCTTGAGCAAGACAAGA+GGG 0.570458 1_3:-34973511 Msa0116090:CDS
ATGTACAACTGGTTTAAGCT+GGG 0.570533 1_3:-34975481 Msa0116090:CDS
TGAAGCTGAACAAGAGGAGG+AGG 0.572752 1_3:-34977652 Msa0116090:CDS
GTTGTCACTGGAATCTTCAC+GGG 0.575662 1_3:+34975608 None:intergenic
GAATATACAGATCCTTTCAA+AGG 0.575964 1_3:-34974172 Msa0116090:CDS
ATATCAAATTCATAACCAAA+GGG 0.578315 1_3:+34968903 None:intergenic
GCGGAAACGGTACCGTTGAA+GGG 0.579178 1_3:-34978179 Msa0116090:CDS
AGTTGTCACTGGAATCTTCA+CGG 0.579890 1_3:+34975607 None:intergenic
TTGTACCAATTGTTTAAACA+AGG 0.581322 1_3:+34977146 None:intergenic
ACAGTTTATAGTTCGGAAGA+GGG 0.583088 1_3:-34977870 Msa0116090:CDS
AAGGTATCCTCACTTGAAAG+AGG 0.584254 1_3:-34976817 Msa0116090:CDS
GATGACGTGGCACAAGCTAT+CGG 0.585670 1_3:-34978155 Msa0116090:CDS
TCTTTCAATTTCAAAACCTG+AGG 0.586296 1_3:+34974271 None:intergenic
CTACATGGTGATAATCGAGA+TGG 0.586913 1_3:-34973486 Msa0116090:CDS
ATTTGAAATTTCAATGGCGG+AGG 0.588198 1_3:-34978324 Msa0116090:exon
ACTTGGTGAGGACAACCGGC+AGG 0.588247 1_3:+34971005 None:intergenic
TTTAGATTTCTGACTTGGTG+AGG 0.588372 1_3:+34970993 None:intergenic
GAGGCCAATTAAGCCAATCT+GGG 0.589315 1_3:+34974290 None:intergenic
TTTGTCTCACCTGAAAATGT+TGG 0.589435 1_3:-34970549 Msa0116090:CDS
CAAGACAAGAGGGAGCTACA+TGG 0.591607 1_3:-34973501 Msa0116090:CDS
TCCCTAAATAAATTAGAAGG+AGG 0.592028 1_3:+34974244 None:intergenic
CAATTAACAGTGGATTGAAG+AGG 0.593067 1_3:-34977255 Msa0116090:intron
AGCTTCTGAATAAAAGTCCA+AGG 0.593398 1_3:+34971047 None:intergenic
GCTGGGAACCGCTTGTCATG+TGG 0.594440 1_3:-34975464 Msa0116090:CDS
TTTGCTCAGGAGCTTGGACG+TGG 0.595460 1_3:-34974070 Msa0116090:CDS
GTCCACCAAGGACAGGTTGG+AGG 0.596001 1_3:-34970475 Msa0116090:intron
AAATGTTCTAAAGCCAGACA+TGG 0.598652 1_3:-34974119 Msa0116090:CDS
ACACAACCTACTGCCAATGT+TGG 0.598702 1_3:-34978203 Msa0116090:CDS
TGAAGAACAAATGGTCGAGA+AGG 0.598904 1_3:-34976538 Msa0116090:CDS
TCCGCGCCAACATTGGCAGT+AGG 0.599431 1_3:+34978197 None:intergenic
AACGGTGGTGTTGTTGTCGA+CGG 0.600381 1_3:-34978021 Msa0116090:CDS
GAATTGGGAAGGTGCTGACG+TGG 0.602384 1_3:-34977838 Msa0116090:CDS
ACCTACTGCCAATGTTGGCG+CGG 0.602878 1_3:-34978198 Msa0116090:CDS
CAGGTCCACCAAGGACAGGT+TGG 0.604718 1_3:-34970478 Msa0116090:CDS
CAATGCTGAACAAGAGTGTG+AGG 0.604968 1_3:-34977943 Msa0116090:CDS
GAAACGTGGTAGGAAGAAGA+AGG 0.606573 1_3:-34977703 Msa0116090:CDS
AAATTCATAACCAAAGGGAG+AGG 0.608230 1_3:+34968908 None:intergenic
GGTGAGGAAAAGAATTGGGA+AGG 0.609015 1_3:-34977849 Msa0116090:CDS
GGTGCTGACGTGGAAGAAGG+AGG 0.610124 1_3:-34977828 Msa0116090:CDS
ACCATGACCACAATCATCAT+CGG 0.612092 1_3:+34975812 None:intergenic
ACGTAAATTTAAAGCTCTGG+GGG 0.612630 1_3:+34975575 None:intergenic
TTACGTGTCAGATTTGGAGG+AGG 0.613999 1_3:-34977742 Msa0116090:CDS
AAATGACGAAGATGAACAAG+AGG 0.614355 1_3:-34977568 Msa0116090:CDS
GATCAGGAATGGATTCATCT+GGG 0.615316 1_3:+34978240 None:intergenic
ACTTCCTCCTCTTTCAAGTG+AGG 0.615486 1_3:+34976810 None:intergenic
AGCACCTTGAGCAAGACAAG+AGG 0.618569 1_3:-34973512 Msa0116090:CDS
GGATTCATCTGGGTCCGGAA+CGG 0.621269 1_3:+34978250 None:intergenic
TGATGAAGCTGAACAAGAGG+AGG 0.621390 1_3:-34977655 Msa0116090:CDS
TTCCGTTGAAGCTGATGACA+TGG 0.621539 1_3:-34977988 Msa0116090:CDS
TTCATGGTGGAAAAGAAGAG+AGG 0.621997 1_3:-34975939 Msa0116090:CDS
AATTAGGCTTCAAGATGCAG+AGG 0.623081 1_3:-34975712 Msa0116090:CDS
TTGCAATTACCACAGCACAC+TGG 0.624403 1_3:+34976774 None:intergenic
TCAGAGAAATGACAAGGGCA+GGG 0.624776 1_3:-34977210 Msa0116090:CDS
TTTCAGGCAACTTCACAGCA+AGG 0.625295 1_3:+34974140 None:intergenic
TCATGGTGGAAAAGAAGAGA+GGG 0.625856 1_3:-34975938 Msa0116090:intron
GTTGTGTGAGAAAGAGGCAA+AGG 0.627339 1_3:-34977794 Msa0116090:CDS
TGAAGTGAAATTGAAATCTG+AGG 0.628039 1_3:-34973565 Msa0116090:CDS
AATAAACAAACGGAATCCAA+AGG 0.628262 1_3:-34977394 Msa0116090:intron
GAAGTGAAATTGAAATCTGA+GGG 0.629648 1_3:-34973564 Msa0116090:CDS
TTCCACCATGAAGATAATCA+CGG 0.630533 1_3:+34975950 None:intergenic
TTAACAAATTGGAGAAAACA+AGG 0.631124 1_3:-34968948 Msa0116090:CDS
GCCACGTCATCACCCTTCAA+CGG 0.632095 1_3:+34978167 None:intergenic
GTAAGCTTCCGATAAACCAC+AGG 0.632121 1_3:-34970497 Msa0116090:CDS
CCAAAAGCCGATGATGATTG+TGG 0.633999 1_3:-34975819 Msa0116090:CDS
GTGCTGACGTGGAAGAAGGA+GGG 0.635869 1_3:-34977827 Msa0116090:CDS
TATACACAATAACACAAGGA+AGG 0.636388 1_3:-34975637 Msa0116090:CDS
TATATATGCTATGCTTGATG+TGG 0.638461 1_3:-34968971 Msa0116090:CDS
GAAAGAGGAGGAAGTTGCTG+AGG 0.638538 1_3:-34976802 Msa0116090:CDS
GGGTGGCATGCAGATAGTGA+TGG 0.640615 1_3:-34975855 Msa0116090:CDS
GTATCCTCACTTGAAAGAGG+AGG 0.641340 1_3:-34976814 Msa0116090:CDS
ACCGTTGAAGGGTGATGACG+TGG 0.641508 1_3:-34978168 Msa0116090:CDS
TGACGAAGATGAACAAGAGG+GGG 0.641516 1_3:-34977565 Msa0116090:CDS
CTGATATACACAATAACACA+AGG 0.643123 1_3:-34975641 Msa0116090:CDS
TCACTGTATATGTGACTGTG+TGG 0.644617 1_3:+34978291 None:intergenic
GAGGCATGTCCAGTGTGCTG+TGG 0.646992 1_3:-34976783 Msa0116090:CDS
GACGTAAATTTAAAGCTCTG+GGG 0.647211 1_3:+34975574 None:intergenic
CCACTGTAATATGTCTGATG+CGG 0.649776 1_3:-34974029 Msa0116090:intron
CGTTGTGGGAAGCTTCTAGG+TGG 0.657294 1_3:-34976009 Msa0116090:CDS
ATTATCAAACATGTCAACGT+TGG 0.657373 1_3:+34973458 None:intergenic
AATGTTCTAAAGCCAGACAT+GGG 0.657555 1_3:-34974118 Msa0116090:CDS
TCAATGTCAGAGAAATGACA+AGG 0.658738 1_3:-34977216 Msa0116090:CDS
AATGACGAAGATGAACAAGA+GGG 0.659397 1_3:-34977567 Msa0116090:CDS
GTGAGTGGTCAAGATTCGGG+TGG 0.671679 1_3:-34975872 Msa0116090:CDS
GGCCGTGATTATCTTCATGG+TGG 0.676321 1_3:-34975952 Msa0116090:CDS
CCCAGCCTGAGATTTGTGAG+TGG 0.676512 1_3:-34975887 Msa0116090:intron
AATGCACGCCACATGACAAG+CGG 0.682465 1_3:+34975456 None:intergenic
TGAGTGCTTCCGTTTGACTG+AGG 0.694932 1_3:-34970526 Msa0116090:CDS
ATGACGAAGATGAACAAGAG+GGG 0.700639 1_3:-34977566 Msa0116090:CDS
TGATTGCTTAGATTGGTGTG+AGG 0.703268 1_3:-34975382 Msa0116090:intron
ATGAACTCAGCACAATGACG+AGG 0.704061 1_3:+34974214 None:intergenic
CAACGATGAAGGTGATGACG+TGG 0.706445 1_3:-34978105 Msa0116090:CDS
GATAAACCACAGGTCCACCA+AGG 0.718071 1_3:-34970487 Msa0116090:CDS
CAATGTCAGAGAAATGACAA+GGG 0.723230 1_3:-34977215 Msa0116090:CDS
CCGCATCAGACATATTACAG+TGG 0.743850 1_3:+34974029 None:intergenic
CGATGAAGGTGATGACGTGG+TGG 0.749030 1_3:-34978102 Msa0116090:CDS
TCAATGGCACTGGAGCAAAG+GGG 0.769506 1_3:-34975532 Msa0116090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATATTATTATTGGTT+TGG - chr1_3:34970256-34970275 Msa0116090:intron 10.0%
!!! TTATACTGTTATTTTTTAAT+TGG - chr1_3:34973345-34973364 Msa0116090:CDS 10.0%
!! TTTAATACAAATTTATTAAG+TGG - chr1_3:34974355-34974374 Msa0116090:intron 10.0%
!!! ATTGTTTAAATTTTTTGAAT+TGG - chr1_3:34977072-34977091 Msa0116090:intron 10.0%
!! ATGTTAAATTACAATTTATA+GGG + chr1_3:34977153-34977172 None:intergenic 10.0%
!! TATGTTAAATTACAATTTAT+AGG + chr1_3:34977154-34977173 None:intergenic 10.0%
!! ATAATAAAGGTTATTCTTTA+AGG - chr1_3:34969815-34969834 Msa0116090:intron 15.0%
!! TGTCGAAAAAATATTATTAT+CGG - chr1_3:34970384-34970403 Msa0116090:intron 15.0%
!!! AAAAAATATTATTATCGGTT+TGG - chr1_3:34970389-34970408 Msa0116090:intron 15.0%
!!! TTTTTAATTGGATATCATAT+TGG - chr1_3:34973357-34973376 Msa0116090:CDS 15.0%
!!! AATGTGTTTCTTTTATAATT+TGG - chr1_3:34973660-34973679 Msa0116090:intron 15.0%
!!! CTTTTATAATTTGGAATTTT+AGG - chr1_3:34973669-34973688 Msa0116090:intron 15.0%
!! GCTTATTTATTCTTATAATT+TGG + chr1_3:34975321-34975340 None:intergenic 15.0%
!!! TATTATTTTCGTATGTTTTT+TGG - chr1_3:34976119-34976138 Msa0116090:intron 15.0%
!!! ATTATTTTCGTATGTTTTTT+GGG - chr1_3:34976120-34976139 Msa0116090:intron 15.0%
!! CAAATATTGTACTAAAATTT+AGG + chr1_3:34976399-34976418 None:intergenic 15.0%
!! TAAAAAAATTTATTCAATGC+GGG + chr1_3:34977437-34977456 None:intergenic 15.0%
!! CTAAAAAAATTTATTCAATG+CGG + chr1_3:34977438-34977457 None:intergenic 15.0%
!!! ATAAAATAGTTTTATGCATT+CGG - chr1_3:34977627-34977646 Msa0116090:CDS 15.0%
!! CATCAATCATTATTATATAA+TGG + chr1_3:34978089-34978108 None:intergenic 15.0%
!! AAAAAAGACAGTTTATAGTT+CGG - chr1_3:34969402-34969421 Msa0116090:intron 20.0%
!!! GTTTTATCAGATGATAATAA+AGG - chr1_3:34969802-34969821 Msa0116090:intron 20.0%
!! CATGTATATATGTTTGAATT+TGG - chr1_3:34969965-34969984 Msa0116090:intron 20.0%
!!! GTTTTTGCTTTATTTTATGA+AGG - chr1_3:34970443-34970462 Msa0116090:intron 20.0%
!!! TTTTTTCTTCTTCTTTCTTT+TGG - chr1_3:34970889-34970908 Msa0116090:intron 20.0%
!! GAAAAAACAAGTACTTTAAA+TGG + chr1_3:34970945-34970964 None:intergenic 20.0%
!!! TCCAATTTTTAATTTGCTTT+TGG - chr1_3:34970992-34971011 Msa0116090:CDS 20.0%
!!! CCAATTTTTAATTTGCTTTT+GGG - chr1_3:34970993-34971012 Msa0116090:CDS 20.0%
!! ATAAAAATTGCAGAAATTAC+AGG + chr1_3:34972900-34972919 None:intergenic 20.0%
!!! CATAAGCAATATATGTTTTT+GGG + chr1_3:34973187-34973206 None:intergenic 20.0%
!! GACTAGATCTTAATTAATTA+GGG + chr1_3:34974122-34974141 None:intergenic 20.0%
!! AGACTAGATCTTAATTAATT+AGG + chr1_3:34974123-34974142 None:intergenic 20.0%
!! AGTCTATTTATCCTATAAAT+AGG - chr1_3:34974138-34974157 Msa0116090:CDS 20.0%
!! ATGATAAATATGGAATAACA+TGG + chr1_3:34975155-34975174 None:intergenic 20.0%
!! TTATTCTTATAATTTGGTCT+AGG + chr1_3:34975315-34975334 None:intergenic 20.0%
!! TATAAGAATAAATAAGCATG+AGG - chr1_3:34975324-34975343 Msa0116090:intron 20.0%
!! TCTATTCTTATCATAATGTA+AGG + chr1_3:34975816-34975835 None:intergenic 20.0%
!! AGAATAGTTAGAACTTTATT+TGG - chr1_3:34975913-34975932 Msa0116090:intron 20.0%
!! ATTATGTATGTATATCTTGA+TGG - chr1_3:34975989-34976008 Msa0116090:CDS 20.0%
!! ATTTCAAAAAAAACTGACAT+GGG + chr1_3:34976510-34976529 None:intergenic 20.0%
!! TATTTCAAAAAAAACTGACA+TGG + chr1_3:34976511-34976530 None:intergenic 20.0%
!! TTTGTGTTAATGTCAATATA+TGG - chr1_3:34976668-34976687 Msa0116090:intron 20.0%
!! AAAAAAATTTATTCAATGCG+GGG + chr1_3:34977436-34977455 None:intergenic 20.0%
!! AAACTACGATTGATATTTAA+AGG + chr1_3:34977563-34977582 None:intergenic 20.0%
!!! TAAAATAGTTTTATGCATTC+GGG - chr1_3:34977628-34977647 Msa0116090:CDS 20.0%
! ATTGATCAGTGAAAAGAATT+TGG - chr1_3:34969771-34969790 Msa0116090:intron 25.0%
!!! CGTTTGTTTATTTTTTGCTT+CGG + chr1_3:34969877-34969896 None:intergenic 25.0%
! CGAAGCAAAAAATAAACAAA+CGG - chr1_3:34969875-34969894 Msa0116090:intron 25.0%
! TTGTACCAATTGTTTAAACA+AGG + chr1_3:34970136-34970155 None:intergenic 25.0%
! TTTGTATAGTTGAGGATATT+TGG - chr1_3:34970213-34970232 Msa0116090:intron 25.0%
!!! ATTATTATTGGTTTGGATTG+TGG - chr1_3:34970263-34970282 Msa0116090:intron 25.0%
! ATTTAAGCAAAAACATACAC+CGG + chr1_3:34970304-34970323 None:intergenic 25.0%
! TTTGTATAGTTGAGGATATT+TGG - chr1_3:34970213-34970232 Msa0116090:intron 25.0%
! AATAAAGCAAAAACATACAC+CGG + chr1_3:34970437-34970456 None:intergenic 25.0%
! ACATGAATAGTTAATCTAAG+GGG + chr1_3:34970578-34970597 None:intergenic 25.0%
! CACATGAATAGTTAATCTAA+GGG + chr1_3:34970579-34970598 None:intergenic 25.0%
! TCACATGAATAGTTAATCTA+AGG + chr1_3:34970580-34970599 None:intergenic 25.0%
! CACACATTAATAAAAGGATA+GGG + chr1_3:34970843-34970862 None:intergenic 25.0%
! ACACACATTAATAAAAGGAT+AGG + chr1_3:34970844-34970863 None:intergenic 25.0%
! AAGCAACACACATTAATAAA+AGG + chr1_3:34970849-34970868 None:intergenic 25.0%
! CCCAAAAGCAAATTAAAAAT+TGG + chr1_3:34970996-34971015 None:intergenic 25.0%
! AAGATAAACTCAAACTCAAT+TGG + chr1_3:34971303-34971322 None:intergenic 25.0%
!!! AGGATTTAAGACATTTTCAA+TGG - chr1_3:34971731-34971750 Msa0116090:intron 25.0%
!!! GAGAGTACTTATTTCTTTTT+GGG - chr1_3:34972120-34972139 Msa0116090:intron 25.0%
!!! ACTTATTTCTTTTTGGGATT+AGG - chr1_3:34972126-34972145 Msa0116090:intron 25.0%
! ATTACATATGAATTGAGTGA+TGG + chr1_3:34972179-34972198 None:intergenic 25.0%
!!! AAAATCTTTTGAAGAGATTC+AGG + chr1_3:34972208-34972227 None:intergenic 25.0%
!! TGAATCTCTTCAAAAGATTT+TGG - chr1_3:34972207-34972226 Msa0116090:intron 25.0%
! GATATACCTAATTACTAATC+AGG - chr1_3:34972356-34972375 Msa0116090:intron 25.0%
! TACAATCCTGATTAGTAATT+AGG + chr1_3:34972365-34972384 None:intergenic 25.0%
! AATAGAAAAATAGAAACCAG+AGG + chr1_3:34972579-34972598 None:intergenic 25.0%
!!! AGGTTTTGAAATTGAAAGAT+TGG - chr1_3:34973012-34973031 Msa0116090:intron 25.0%
! CTTTCCCTAAATAAATTAGA+AGG + chr1_3:34973041-34973060 None:intergenic 25.0%
! GGATCTGTATATTCTTTATA+CGG + chr1_3:34973101-34973120 None:intergenic 25.0%
!! CCATAAGCAATATATGTTTT+TGG + chr1_3:34973188-34973207 None:intergenic 25.0%
! CCAAAAACATATATTGCTTA+TGG - chr1_3:34973185-34973204 Msa0116090:intron 25.0%
! TAATTGGATATCATATTGGA+AGG - chr1_3:34973361-34973380 Msa0116090:CDS 25.0%
! TATTAGTAACAAACACACAA+AGG + chr1_3:34973554-34973573 None:intergenic 25.0%
! TTTAAATATTCCTCCAATTC+AGG + chr1_3:34973958-34973977 None:intergenic 25.0%
!!! AATAGTTTTACCTGCTTTAA+AGG + chr1_3:34974018-34974037 None:intergenic 25.0%
! TATTGTGGATACCTATTTAT+AGG + chr1_3:34974152-34974171 None:intergenic 25.0%
! AATGATATAGAGTTATCAGT+GGG + chr1_3:34974312-34974331 None:intergenic 25.0%
! TAATGATATAGAGTTATCAG+TGG + chr1_3:34974313-34974332 None:intergenic 25.0%
!! AGATGGTATCAATTTTATCA+TGG + chr1_3:34974387-34974406 None:intergenic 25.0%
! CTGATACCATACTAAAATTT+GGG + chr1_3:34975029-34975048 None:intergenic 25.0%
! TCTGATACCATACTAAAATT+TGG + chr1_3:34975030-34975049 None:intergenic 25.0%
! TTTGTCTTAGATCTCTTATT+GGG - chr1_3:34975051-34975070 Msa0116090:intron 25.0%
!! TAAGCTTTATAAGACTACAT+GGG + chr1_3:34975248-34975267 None:intergenic 25.0%
!! TTTTACAAAATCAGCTTGTA+AGG + chr1_3:34975282-34975301 None:intergenic 25.0%
! AAAGAAAGAAACACAATTCT+GGG - chr1_3:34975505-34975524 Msa0116090:CDS 25.0%
! ACTTAATCCAAAATGTAAGT+TGG - chr1_3:34975624-34975643 Msa0116090:CDS 25.0%
! CTTAATCCAAAATGTAAGTT+GGG - chr1_3:34975625-34975644 Msa0116090:CDS 25.0%
! TATCCAACAGATATGATTAT+CGG - chr1_3:34975743-34975762 Msa0116090:CDS 25.0%
! CATATTATATATTGTTCGAC+TGG - chr1_3:34975774-34975793 Msa0116090:CDS 25.0%
!!! TCGACTGGTTTATTAATTTA+TGG - chr1_3:34975789-34975808 Msa0116090:CDS 25.0%
! TAATGAATTTCCTTTCTTTC+TGG + chr1_3:34975855-34975874 None:intergenic 25.0%
! GTAAAATCTTCATACATGTA+TGG - chr1_3:34976310-34976329 Msa0116090:intron 25.0%
!! AATAAACTTCTAGGAAAACA+AGG + chr1_3:34976345-34976364 None:intergenic 25.0%
!! TGTAGTCTTAATAAACTTCT+AGG + chr1_3:34976354-34976373 None:intergenic 25.0%
!! TAAGACTACAAATTTTCTCT+AGG - chr1_3:34976364-34976383 Msa0116090:intron 25.0%
!!! ATACTGATTCAAGCTTATAT+GGG + chr1_3:34976465-34976484 None:intergenic 25.0%
! TTTATACAATATCAGCATGA+TGG - chr1_3:34976549-34976568 Msa0116090:CDS 25.0%
! TTATACAATATCAGCATGAT+GGG - chr1_3:34976550-34976569 Msa0116090:CDS 25.0%
!! TTATTTCTTGCAAATTGTTG+AGG - chr1_3:34976582-34976601 Msa0116090:CDS 25.0%
! AAAAGTGAGTAAGTGATAAA+TGG + chr1_3:34976608-34976627 None:intergenic 25.0%
! AAAGAAGCTAATGACAAAAT+AGG + chr1_3:34976891-34976910 None:intergenic 25.0%
! TTATAATAGTGCCAAACATT+TGG + chr1_3:34977005-34977024 None:intergenic 25.0%
! TGCATTACAATATTTCTCTA+GGG + chr1_3:34977486-34977505 None:intergenic 25.0%
! ATGCATTACAATATTTCTCT+AGG + chr1_3:34977487-34977506 None:intergenic 25.0%
! TACTGCTTATGTTAAAGTTA+TGG - chr1_3:34978030-34978049 Msa0116090:CDS 25.0%
! ACTGCTTATGTTAAAGTTAT+GGG - chr1_3:34978031-34978050 Msa0116090:CDS 25.0%
!!! TATGGGTTTTAGATAAAGAA+CGG - chr1_3:34978048-34978067 Msa0116090:CDS 25.0%
!! ATTTGTTTCTCTATTCTCTT+AGG + chr1_3:34978172-34978191 None:intergenic 25.0%
! TTAACAAATTGGAGAAAACA+AGG - chr1_3:34978331-34978350 Msa0116090:exon 25.0%
! ACCTGCATTTGAAATTTCAA+TGG - chr1_3:34968949-34968968 Msa0116090:CDS 30.0%
! TGCATTTGAAATTTCAATGG+CGG - chr1_3:34968952-34968971 Msa0116090:CDS 30.0%
!!! ATATCTTGTTTTTCTCGATC+AGG + chr1_3:34969223-34969242 None:intergenic 30.0%
TGATCGAGAAAAACAAGATA+TGG - chr1_3:34969222-34969241 Msa0116090:intron 30.0%
GAAAAACAAGATATGGATGT+TGG - chr1_3:34969229-34969248 Msa0116090:intron 30.0%
TTCAACGATTTAATCTTCCT+AGG + chr1_3:34969511-34969530 None:intergenic 30.0%
TAGGAAGATTAAATCGTTGA+AGG - chr1_3:34969510-34969529 Msa0116090:intron 30.0%
AGAAAAAGGAAAGTAGGTTA+TGG - chr1_3:34969679-34969698 Msa0116090:intron 30.0%
AATAAACAAACGGAATCCAA+AGG - chr1_3:34969885-34969904 Msa0116090:intron 30.0%
! TTCTGTTTCTCAATTAACAG+TGG - chr1_3:34970014-34970033 Msa0116090:intron 30.0%
! GCATACCTTGTTTAAACAAT+TGG - chr1_3:34970128-34970147 Msa0116090:intron 30.0%
! TGTTTTACCTTCTCATTTGT+TGG - chr1_3:34970169-34970188 Msa0116090:intron 30.0%
AAGATAACCAACAAATGAGA+AGG + chr1_3:34970179-34970198 None:intergenic 30.0%
AATGAGACTTTGTATAGTTG+AGG - chr1_3:34970205-34970224 Msa0116090:intron 30.0%
AATGAGACTTTGTATAGTTG+AGG - chr1_3:34970205-34970224 Msa0116090:intron 30.0%
!! ATTATTATCGGTTTGGATTG+TGG - chr1_3:34970396-34970415 Msa0116090:intron 30.0%
CATGAATAGTTAATCTAAGG+GGG + chr1_3:34970577-34970596 None:intergenic 30.0%
! ACATTTGAAATGTGATCATC+TGG - chr1_3:34970613-34970632 Msa0116090:intron 30.0%
AAGTTCTTTCAGCATATACT+TGG + chr1_3:34970698-34970717 None:intergenic 30.0%
! TCTTCCATATTTAAGACGAT+TGG - chr1_3:34970717-34970736 Msa0116090:intron 30.0%
TCATCCAATCGTCTTAAATA+TGG + chr1_3:34970724-34970743 None:intergenic 30.0%
! ACAACAAAAAGTGAGACTTT+TGG + chr1_3:34970800-34970819 None:intergenic 30.0%
!!! CTTATTTTTAGGGTAATCTG+CGG + chr1_3:34971062-34971081 None:intergenic 30.0%
!!! AGTACACACGCTTATTTTTA+GGG + chr1_3:34971072-34971091 None:intergenic 30.0%
AAGAACTCGAAGAAACAATT+AGG - chr1_3:34971551-34971570 Msa0116090:intron 30.0%
CTGATATACACAATAACACA+AGG - chr1_3:34971638-34971657 Msa0116090:intron 30.0%
TATACACAATAACACAAGGA+AGG - chr1_3:34971642-34971661 Msa0116090:intron 30.0%
! TGACGTAAATTTAAAGCTCT+GGG + chr1_3:34971709-34971728 None:intergenic 30.0%
! ATGACGTAAATTTAAAGCTC+TGG + chr1_3:34971710-34971729 None:intergenic 30.0%
!! AGCTTTAAATTTACGTCATG+AGG - chr1_3:34971711-34971730 Msa0116090:intron 30.0%
AGTACATTGCTGATAATTAC+AGG + chr1_3:34971775-34971794 None:intergenic 30.0%
AATGTACTTGAATGTACAAC+TGG - chr1_3:34971787-34971806 Msa0116090:intron 30.0%
! TTCATCACGTTTTCTGAATT+TGG - chr1_3:34972098-34972117 Msa0116090:intron 30.0%
!!! GGAGAGTACTTATTTCTTTT+TGG - chr1_3:34972119-34972138 Msa0116090:intron 30.0%
AAACTGTTGGAACAGTAATT+TGG + chr1_3:34972239-34972258 None:intergenic 30.0%
!!! TTACTGTTCCAACAGTTTTT+TGG - chr1_3:34972241-34972260 Msa0116090:intron 30.0%
! CAGTAAGAAACATTTCTAGA+TGG - chr1_3:34972276-34972295 Msa0116090:intron 30.0%
TTATAAGAGATACCAGAACA+TGG - chr1_3:34972312-34972331 Msa0116090:intron 30.0%
CTCATCATCTTATCTTTCAT+AGG - chr1_3:34972477-34972496 Msa0116090:intron 30.0%
AGATCATCTAGTTGAAGTTA+GGG - chr1_3:34972629-34972648 Msa0116090:intron 30.0%
! GAGAACAATATAGTTTTCTC+TGG + chr1_3:34972767-34972786 None:intergenic 30.0%
! TAAGCAAATAGAGTTTTCTC+TGG + chr1_3:34972831-34972850 None:intergenic 30.0%
TCTTTCAATTTCAAAACCTG+AGG + chr1_3:34973011-34973030 None:intergenic 30.0%
GCCTCCTTCTAATTTATTTA+GGG - chr1_3:34973034-34973053 Msa0116090:intron 30.0%
TCCCTAAATAAATTAGAAGG+AGG + chr1_3:34973038-34973057 None:intergenic 30.0%
TGTATATTCTTTATACGGCA+AGG + chr1_3:34973096-34973115 None:intergenic 30.0%
GAATATACAGATCCTTTCAA+AGG - chr1_3:34973107-34973126 Msa0116090:intron 30.0%
! CAAGACATTCTAGAAAAAAC+AGG + chr1_3:34973303-34973322 None:intergenic 30.0%
TGAAGTGAAATTGAAATCTG+AGG - chr1_3:34973714-34973733 Msa0116090:intron 30.0%
GAAGTGAAATTGAAATCTGA+GGG - chr1_3:34973715-34973734 Msa0116090:intron 30.0%
ATTATCAAACATGTCAACGT+TGG + chr1_3:34973824-34973843 None:intergenic 30.0%
!!! TGTTCGAGTTTTGGAAAATA+GGG - chr1_3:34973882-34973901 Msa0116090:intron 30.0%
TAAATAGGTATCCACAATAG+TGG - chr1_3:34974153-34974172 Msa0116090:CDS 30.0%
AATGAGCGATGTATAATAGA+AGG + chr1_3:34974206-34974225 None:intergenic 30.0%
CCATTGAGTAATTTATTTCG+AGG + chr1_3:34974287-34974306 None:intergenic 30.0%
CCTCGAAATAAATTACTCAA+TGG - chr1_3:34974284-34974303 Msa0116090:CDS 30.0%
ATGATATAGAGTTATCAGTG+GGG + chr1_3:34974311-34974330 None:intergenic 30.0%
ACTCAGAAGAAAATGAAAGA+TGG + chr1_3:34974404-34974423 None:intergenic 30.0%
ATCAAATATACACGTCACAA+AGG - chr1_3:34974439-34974458 Msa0116090:intron 30.0%
! GTACTTCCTGTTCTAATTTT+TGG + chr1_3:34974560-34974579 None:intergenic 30.0%
ACATGCACAAACTGAAAATA+CGG - chr1_3:34974644-34974663 Msa0116090:intron 30.0%
TACTAATATGGAGTTTGGTT+AGG + chr1_3:34974779-34974798 None:intergenic 30.0%
TAACCAAACTCCATATTAGT+AGG - chr1_3:34974778-34974797 Msa0116090:intron 30.0%
AACCAAACTCCATATTAGTA+GGG - chr1_3:34974779-34974798 Msa0116090:intron 30.0%
! ACCATACTAAAATTTGGGTT+AGG + chr1_3:34975024-34975043 None:intergenic 30.0%
GTTTGTCTTAGATCTCTTAT+TGG - chr1_3:34975050-34975069 Msa0116090:intron 30.0%
! CTAAGCTTTATAAGACTACA+TGG + chr1_3:34975249-34975268 None:intergenic 30.0%
!! CATGTAGTCTTATAAAGCTT+AGG - chr1_3:34975247-34975266 Msa0116090:intron 30.0%
CACATAAGACAAAAATCCTT+AGG - chr1_3:34975380-34975399 Msa0116090:intron 30.0%
GAAAGAAAGAAACACAATTC+TGG - chr1_3:34975504-34975523 Msa0116090:CDS 30.0%
ATACCGATAATCATATCTGT+TGG + chr1_3:34975749-34975768 None:intergenic 30.0%
TTACCTTTAGATTTCTGACT+TGG + chr1_3:34976294-34976313 None:intergenic 30.0%
!! CATACTGATTCAAGCTTATA+TGG + chr1_3:34976466-34976485 None:intergenic 30.0%
CATATAAGCTTGAATCAGTA+TGG - chr1_3:34976464-34976483 Msa0116090:intron 30.0%
GATTAAGAGAAAAGAAATCC+GGG + chr1_3:34976635-34976654 None:intergenic 30.0%
CGATTAAGAGAAAAGAAATC+CGG + chr1_3:34976636-34976655 None:intergenic 30.0%
! TGTCATTAGCTTCTTTCAAA+TGG - chr1_3:34976895-34976914 Msa0116090:intron 30.0%
CAGATATCAGTGTTTCAATT+CGG + chr1_3:34977035-34977054 None:intergenic 30.0%
TTTATAATCTACGGTCTCAA+CGG + chr1_3:34977108-34977127 None:intergenic 30.0%
ACCTCGTAGTTTATAATCTA+CGG + chr1_3:34977117-34977136 None:intergenic 30.0%
! AAGAAAGTACAGATTGTCTA+CGG + chr1_3:34977231-34977250 None:intergenic 30.0%
ACAATCTGTACTTTCTTAGT+TGG - chr1_3:34977234-34977253 Msa0116090:CDS 30.0%
TGTACTTTCTTAGTTGGATA+AGG - chr1_3:34977240-34977259 Msa0116090:CDS 30.0%
TTTCTTAGTTGGATAAGGTT+TGG - chr1_3:34977245-34977264 Msa0116090:CDS 30.0%
AGTATATGAGAATCGAGTAT+GGG + chr1_3:34977322-34977341 None:intergenic 30.0%
AAGTATATGAGAATCGAGTA+TGG + chr1_3:34977323-34977342 None:intergenic 30.0%
GCATTACAATATTTCTCTAG+GGG + chr1_3:34977485-34977504 None:intergenic 30.0%
TGTTAAAGTGGACATATTGT+TGG + chr1_3:34977513-34977532 None:intergenic 30.0%
AAAGGAGCAACTAAATCAAT+CGG + chr1_3:34977545-34977564 None:intergenic 30.0%
ATTGTCTACAACAACCAAAT+AGG + chr1_3:34977830-34977849 None:intergenic 30.0%
! GAGCTTTTAGTGATTTTCAA+AGG + chr1_3:34977875-34977894 None:intergenic 30.0%
! AAGCTCTAGTAAAGACATAA+AGG - chr1_3:34977889-34977908 Msa0116090:CDS 30.0%
!! ATAAAGGTTTCGTGTTGATT+TGG - chr1_3:34977905-34977924 Msa0116090:CDS 30.0%
TTAAGATTGCAATCATGTGT+TGG - chr1_3:34977987-34978006 Msa0116090:CDS 30.0%
TATATATGCTATGCTTGATG+TGG - chr1_3:34978308-34978327 Msa0116090:CDS 30.0%
CAGTGTAGCATAGATAGTTA+GGG - chr1_3:34968923-34968942 Msa0116090:CDS 35.0%
GCCATTGAAATTTCAAATGC+AGG + chr1_3:34968953-34968972 None:intergenic 35.0%
! ATTTGAAATTTCAATGGCGG+AGG - chr1_3:34968955-34968974 Msa0116090:CDS 35.0%
ATTAAAGAGAAGAAGAGAGC+TGG - chr1_3:34969370-34969389 Msa0116090:intron 35.0%
ACAGTTTATAGTTCGGAAGA+GGG - chr1_3:34969409-34969428 Msa0116090:intron 35.0%
AGGAGGATATGAAGAAAAAG+TGG - chr1_3:34969554-34969573 Msa0116090:intron 35.0%
ATGAAGAAAAAGTGGAAACG+TGG - chr1_3:34969562-34969581 Msa0116090:intron 35.0%
GAAGAAGAAGGTCATAATTG+AGG - chr1_3:34969588-34969607 Msa0116090:intron 35.0%
AGAAGAAACCTGGTAGAAAA+AGG - chr1_3:34969665-34969684 Msa0116090:intron 35.0%
AAATGACGAAGATGAACAAG+AGG - chr1_3:34969711-34969730 Msa0116090:intron 35.0%
AATGACGAAGATGAACAAGA+GGG - chr1_3:34969712-34969731 Msa0116090:intron 35.0%
AGATCATGTTATGTCACCTT+TGG + chr1_3:34969904-34969923 None:intergenic 35.0%
CAATTATGCAAACACGTGTA+AGG + chr1_3:34969991-34970010 None:intergenic 35.0%
TACACGTGTTTGCATAATTG+TGG - chr1_3:34969991-34970010 Msa0116090:intron 35.0%
!! CAATTAACAGTGGATTGAAG+AGG - chr1_3:34970024-34970043 Msa0116090:intron 35.0%
! TGTCATTTCTCTGACATTGA+TGG + chr1_3:34970063-34970082 None:intergenic 35.0%
TCAATGTCAGAGAAATGACA+AGG - chr1_3:34970063-34970082 Msa0116090:intron 35.0%
CAATGTCAGAGAAATGACAA+GGG - chr1_3:34970064-34970083 Msa0116090:intron 35.0%
TGAGATGCACAAAATGCAAA+CGG - chr1_3:34970095-34970114 Msa0116090:intron 35.0%
AGAAGGTAAAACAGAAGTGA+TGG + chr1_3:34970162-34970181 None:intergenic 35.0%
!! TTATTGGTTTGGATTGTGGA+TGG - chr1_3:34970267-34970286 Msa0116090:intron 35.0%
ACGATTGGATGAAGAACAAA+TGG - chr1_3:34970732-34970751 Msa0116090:intron 35.0%
GAGATAGAAGCAAAGAGAAA+AGG - chr1_3:34970763-34970782 Msa0116090:intron 35.0%
GGGAAAAAAGCAAGAAGAAA+TGG + chr1_3:34970823-34970842 None:intergenic 35.0%
AAAAAAGAGCCATGAAGCAT+GGG + chr1_3:34970874-34970893 None:intergenic 35.0%
AAAAAAAGAGCCATGAAGCA+TGG + chr1_3:34970875-34970894 None:intergenic 35.0%
!! CAGTACACACGCTTATTTTT+AGG + chr1_3:34971073-34971092 None:intergenic 35.0%
CTAAAAATAAGCGTGTGTAC+TGG - chr1_3:34971071-34971090 Msa0116090:CDS 35.0%
! GAGTTTGAGTTTATCTTCCA+AGG - chr1_3:34971306-34971325 Msa0116090:intron 35.0%
TTCCACCATGAAGATAATCA+CGG + chr1_3:34971332-34971351 None:intergenic 35.0%
ATTTGTGAGTGGTCAAGATT+CGG - chr1_3:34971403-34971422 Msa0116090:intron 35.0%
ACTAACTCAGAGATGCAATT+TGG + chr1_3:34971520-34971539 None:intergenic 35.0%
ATATCAGTTGCATTCCTAAC+AGG + chr1_3:34971625-34971644 None:intergenic 35.0%
! ACGTAAATTTAAAGCTCTGG+GGG + chr1_3:34971707-34971726 None:intergenic 35.0%
! GACGTAAATTTAAAGCTCTG+GGG + chr1_3:34971708-34971727 None:intergenic 35.0%
! TAAGACATTTTCAATGGCAC+TGG - chr1_3:34971737-34971756 Msa0116090:intron 35.0%
! AATGTACAACTGGTTTAAGC+TGG - chr1_3:34971797-34971816 Msa0116090:intron 35.0%
! ATGTACAACTGGTTTAAGCT+GGG - chr1_3:34971798-34971817 Msa0116090:intron 35.0%
GCTTGGTATTTCTTATCTGA+CGG + chr1_3:34971849-34971868 None:intergenic 35.0%
! TACCAAGCACAAAACACTTT+TGG - chr1_3:34971861-34971880 Msa0116090:intron 35.0%
!!! ATCCAAAAGTGTTTTGTGCT+TGG + chr1_3:34971866-34971885 None:intergenic 35.0%
AGGCAATTGATTGCTTAGAT+TGG - chr1_3:34971890-34971909 Msa0116090:intron 35.0%
TCTGAGTATGCACAAGAAAA+AGG + chr1_3:34972612-34972631 None:intergenic 35.0%
CAGATCATCTAGTTGAAGTT+AGG - chr1_3:34972628-34972647 Msa0116090:intron 35.0%
TGGTCTGTTCAACTATAGAA+AGG + chr1_3:34972747-34972766 None:intergenic 35.0%
TGGTCTGTTCAACTATAGAA+AGG + chr1_3:34972747-34972766 None:intergenic 35.0%
!! TAGATGGACGTGTCATTTAA+AGG + chr1_3:34972874-34972893 None:intergenic 35.0%
CAGAAATTACAGGCAATAGA+TGG + chr1_3:34972890-34972909 None:intergenic 35.0%
AATGTGCACCAATTCTTTAC+TGG - chr1_3:34972951-34972970 Msa0116090:intron 35.0%
ATGTGCACCAATTCTTTACT+GGG - chr1_3:34972952-34972971 Msa0116090:intron 35.0%
TTGTGTACCCAGTAAAGAAT+TGG + chr1_3:34972962-34972981 None:intergenic 35.0%
TTCTTTACTGGGTACACAAA+TGG - chr1_3:34972963-34972982 Msa0116090:intron 35.0%
GGCCTCCTTCTAATTTATTT+AGG - chr1_3:34973033-34973052 Msa0116090:intron 35.0%
AGGTTAAGAATGCCTTTGAA+AGG + chr1_3:34973122-34973141 None:intergenic 35.0%
!!! TCTGGCTTTAGAACATTTTC+AGG + chr1_3:34973158-34973177 None:intergenic 35.0%
!! AAATGTTCTAAAGCCAGACA+TGG - chr1_3:34973160-34973179 Msa0116090:intron 35.0%
!! AATGTTCTAAAGCCAGACAT+GGG - chr1_3:34973161-34973180 Msa0116090:intron 35.0%
! TATTGCTTATGGATTTGCTC+AGG - chr1_3:34973196-34973215 Msa0116090:intron 35.0%
ATTCAATTCTCTGTCTTTCC+TGG - chr1_3:34973277-34973296 Msa0116090:CDS 35.0%
!! CATAATGCATTGGCTTACAA+AGG + chr1_3:34973414-34973433 None:intergenic 35.0%
!! CTTTTGGGTCAGTTTCTTAA+TGG + chr1_3:34973749-34973768 None:intergenic 35.0%
!! GCAAAATAGTGTTCGAGTTT+TGG - chr1_3:34973873-34973892 Msa0116090:intron 35.0%
!!! GTGTTCGAGTTTTGGAAAAT+AGG - chr1_3:34973881-34973900 Msa0116090:intron 35.0%
!!! GTTCGAGTTTTGGAAAATAG+GGG - chr1_3:34973883-34973902 Msa0116090:intron 35.0%
AATAGGGGTGATTCTTTAGA+TGG - chr1_3:34973898-34973917 Msa0116090:intron 35.0%
!! AGAAGCATTTCAGAGAGTTT+AGG - chr1_3:34973977-34973996 Msa0116090:intron 35.0%
! GTAATTTATTTCGAGGTGCT+GGG + chr1_3:34974280-34974299 None:intergenic 35.0%
AGTAATTTATTTCGAGGTGC+TGG + chr1_3:34974281-34974300 None:intergenic 35.0%
AAACCAGTAATCAGCTAAAG+AGG - chr1_3:34974532-34974551 Msa0116090:intron 35.0%
TTTCAGTTTGTGCATGTTGT+GGG + chr1_3:34974641-34974660 None:intergenic 35.0%
! TTTTCAGTTTGTGCATGTTG+TGG + chr1_3:34974642-34974661 None:intergenic 35.0%
CATGCACAAACTGAAAATAC+GGG - chr1_3:34974645-34974664 Msa0116090:intron 35.0%
TAATATGGAGTTTGGTTAGG+AGG + chr1_3:34974776-34974795 None:intergenic 35.0%
ACCAAACTCCATATTAGTAG+GGG - chr1_3:34974780-34974799 Msa0116090:intron 35.0%
! CAATTTTTGTGTTAACCCTC+AGG + chr1_3:34974822-34974841 None:intergenic 35.0%
ATAATGCAGGTGGTATAACA+TGG + chr1_3:34974864-34974883 None:intergenic 35.0%
TGTCTTATGTAGTGCTTATC+TGG - chr1_3:34974951-34974970 Msa0116090:intron 35.0%
GCAATCTTTACCTTATGAGT+CGG - chr1_3:34974978-34974997 Msa0116090:intron 35.0%
!! GCCTAACCCAAATTTTAGTA+TGG - chr1_3:34975020-34975039 Msa0116090:intron 35.0%
TGAAGAGCGGATGATAAATA+TGG + chr1_3:34975165-34975184 None:intergenic 35.0%
ATATTTATCATCCGCTCTTC+AGG - chr1_3:34975164-34975183 Msa0116090:intron 35.0%
! TAATTTGGTCTAGGACTAAC+TGG + chr1_3:34975306-34975325 None:intergenic 35.0%
CTCATGAAAAGACGAAAAAG+AGG - chr1_3:34975571-34975590 Msa0116090:CDS 35.0%
! AATCCAAAATGTAAGTTGGG+TGG - chr1_3:34975628-34975647 Msa0116090:CDS 35.0%
! ATCCAAAATGTAAGTTGGGT+GGG - chr1_3:34975629-34975648 Msa0116090:CDS 35.0%
TAAGTACCACAATGGTTAGT+GGG + chr1_3:34975689-34975708 None:intergenic 35.0%
TTGAAGACTAAGTACCACAA+TGG + chr1_3:34975697-34975716 None:intergenic 35.0%
AGTTCAATGACCAGAAAGAA+AGG - chr1_3:34975842-34975861 Msa0116090:CDS 35.0%
ATACCAGTCCAAAAAGTCAT+TGG - chr1_3:34975884-34975903 Msa0116090:CDS 35.0%
! CTTACCAACCAATGACTTTT+TGG + chr1_3:34975895-34975914 None:intergenic 35.0%
TGAATAACCTACATTACCAC+AGG + chr1_3:34976022-34976041 None:intergenic 35.0%
AGAGCATAAGAGGAAACTTA+AGG - chr1_3:34976075-34976094 Msa0116090:CDS 35.0%
!!! TTCGTATGTTTTTTGGGAAG+TGG - chr1_3:34976126-34976145 Msa0116090:intron 35.0%
!!! TCGTATGTTTTTTGGGAAGT+GGG - chr1_3:34976127-34976146 Msa0116090:intron 35.0%
TGGTGACTGTTTATATGTGT+TGG + chr1_3:34976169-34976188 None:intergenic 35.0%
ACTGTCAAGTGTCAACAAAA+TGG + chr1_3:34976189-34976208 None:intergenic 35.0%
AGCTTCTGAATAAAAGTCCA+AGG + chr1_3:34976235-34976254 None:intergenic 35.0%
! TGGACTTTTATTCAGAAGCT+AGG - chr1_3:34976235-34976254 Msa0116090:CDS 35.0%
!! TTTAGATTTCTGACTTGGTG+AGG + chr1_3:34976289-34976308 None:intergenic 35.0%
TCACCAAGTCAGAAATCTAA+AGG - chr1_3:34976288-34976307 Msa0116090:intron 35.0%
TTCAAGCTTATATGGGTATG+AGG + chr1_3:34976458-34976477 None:intergenic 35.0%
!!! ACTTACTCACTTTTTATGCC+CGG - chr1_3:34976614-34976633 Msa0116090:CDS 35.0%
GATGCATGACTACAAAAAGA+CGG + chr1_3:34976695-34976714 None:intergenic 35.0%
! CTTTTTGTAGTCATGCATCA+AGG - chr1_3:34976696-34976715 Msa0116090:intron 35.0%
TTTGTCTCACCTGAAAATGT+TGG - chr1_3:34976730-34976749 Msa0116090:intron 35.0%
! ATCCTGCTGTTTATATGTGT+TGG - chr1_3:34976853-34976872 Msa0116090:intron 35.0%
TACCAACACATATAAACAGC+AGG + chr1_3:34976858-34976877 None:intergenic 35.0%
TAGAACAAGTCGTCTTGATT+GGG - chr1_3:34976965-34976984 Msa0116090:intron 35.0%
TTTAGGTCACTCCAAATGTT+TGG - chr1_3:34976991-34977010 Msa0116090:intron 35.0%
ACCGTAGATTATAAACTACG+AGG - chr1_3:34977113-34977132 Msa0116090:intron 35.0%
GTATATGAGAATCGAGTATG+GGG + chr1_3:34977321-34977340 None:intergenic 35.0%
AAATTTATTCAATGCGGGGA+CGG + chr1_3:34977432-34977451 None:intergenic 35.0%
CGGTCTAACAAATGTTAAAG+TGG + chr1_3:34977525-34977544 None:intergenic 35.0%
!!! ATAGTTTTATGCATTCGGGA+CGG - chr1_3:34977632-34977651 Msa0116090:CDS 35.0%
! TTTTCCCCGATTTCAAAACA+CGG + chr1_3:34977711-34977730 None:intergenic 35.0%
GCTTGATGTGGTTAACAAAT+TGG - chr1_3:34978320-34978339 Msa0116090:exon 35.0%
GCAGTGTAGCATAGATAGTT+AGG - chr1_3:34968922-34968941 Msa0116090:CDS 40.0%
TCACTGTATATGTGACTGTG+TGG + chr1_3:34968991-34969010 None:intergenic 40.0%
! GATCAGGAATGGATTCATCT+GGG + chr1_3:34969042-34969061 None:intergenic 40.0%
! TGATCAGGAATGGATTCATC+TGG + chr1_3:34969043-34969062 None:intergenic 40.0%
!! TATCGGTGTTAGAGCTGAAA+CGG - chr1_3:34969141-34969160 Msa0116090:intron 40.0%
TATGGATGTTGGCGCAAAAA+CGG - chr1_3:34969240-34969259 Msa0116090:intron 40.0%
GACAGTTTATAGTTCGGAAG+AGG - chr1_3:34969408-34969427 Msa0116090:intron 40.0%
AAGAGGGTGAGGAAAAGAAT+TGG - chr1_3:34969425-34969444 Msa0116090:intron 40.0%
AGAGGGTGAGGAAAAGAATT+GGG - chr1_3:34969426-34969445 Msa0116090:intron 40.0%
GGAAGATTACGTGTCAGATT+TGG - chr1_3:34969531-34969550 Msa0116090:intron 40.0%
AGATTACGTGTCAGATTTGG+AGG - chr1_3:34969534-34969553 Msa0116090:intron 40.0%
AGAAAAAGTGGAAACGTGGT+AGG - chr1_3:34969566-34969585 Msa0116090:intron 40.0%
GAATGATGAAGCTGAACAAG+AGG - chr1_3:34969621-34969640 Msa0116090:intron 40.0%
! CCTACTTTCCTTTTTCTACC+AGG + chr1_3:34969676-34969695 None:intergenic 40.0%
CCTGGTAGAAAAAGGAAAGT+AGG - chr1_3:34969673-34969692 Msa0116090:intron 40.0%
ATGACGAAGATGAACAAGAG+GGG - chr1_3:34969713-34969732 Msa0116090:intron 40.0%
! CTGACATTGATGGCACATTA+AGG + chr1_3:34970053-34970072 None:intergenic 40.0%
!!! GTGGATGGTGATATTTTGAC+CGG - chr1_3:34970282-34970301 Msa0116090:intron 40.0%
!! TTATCGGTTTGGATTGTGGA+TGG - chr1_3:34970400-34970419 Msa0116090:intron 40.0%
!!! GTGGATGGTGATATTTTGAC+CGG - chr1_3:34970282-34970301 Msa0116090:intron 40.0%
! AAGGTATCCTCACTTGAAAG+AGG - chr1_3:34970462-34970481 Msa0116090:intron 40.0%
TGAAGAACAAATGGTCGAGA+AGG - chr1_3:34970741-34970760 Msa0116090:intron 40.0%
! AAATAAGCGTGTGTACTGGT+AGG - chr1_3:34971075-34971094 Msa0116090:intron 40.0%
! AATAAGCGTGTGTACTGGTA+GGG - chr1_3:34971076-34971095 Msa0116090:intron 40.0%
! AGCATTTTGTACAGCTTCTG+TGG + chr1_3:34971215-34971234 None:intergenic 40.0%
! TTCATGGTGGAAAAGAAGAG+AGG - chr1_3:34971340-34971359 Msa0116090:intron 40.0%
! TCATGGTGGAAAAGAAGAGA+GGG - chr1_3:34971341-34971360 Msa0116090:intron 40.0%
TTTGTGAGTGGTCAAGATTC+GGG - chr1_3:34971404-34971423 Msa0116090:intron 40.0%
ACCATGACCACAATCATCAT+CGG + chr1_3:34971470-34971489 None:intergenic 40.0%
AACTCAGAGATGCAATTTGG+TGG + chr1_3:34971517-34971536 None:intergenic 40.0%
AATTAGGCTTCAAGATGCAG+AGG - chr1_3:34971567-34971586 Msa0116090:intron 40.0%
! GTTCTTGTTTGAAGCCTGTT+AGG - chr1_3:34971608-34971627 Msa0116090:intron 40.0%
AGTTGTCACTGGAATCTTCA+CGG + chr1_3:34971675-34971694 None:intergenic 40.0%
GGAATACAAGAAGTTGTCAC+TGG + chr1_3:34971686-34971705 None:intergenic 40.0%
! GCACAAAACACTTTTGGATG+TGG - chr1_3:34971867-34971886 Msa0116090:intron 40.0%
! CAAAACACTTTTGGATGTGG+AGG - chr1_3:34971870-34971889 Msa0116090:intron 40.0%
TGATTGCTTAGATTGGTGTG+AGG - chr1_3:34971897-34971916 Msa0116090:intron 40.0%
!!! CTGTTCCAACAGTTTTTTGG+CGG - chr1_3:34972244-34972263 Msa0116090:intron 40.0%
ATATGACGTTAGCCATGTTC+TGG + chr1_3:34972327-34972346 None:intergenic 40.0%
GACGAGCGAAGTTATAACTA+AGG + chr1_3:34972427-34972446 None:intergenic 40.0%
GGTAGATCAAGCGAAAAAAC+AGG + chr1_3:34972530-34972549 None:intergenic 40.0%
!! AGGGCAAGAAGAAAGTATCT+GGG + chr1_3:34972551-34972570 None:intergenic 40.0%
!! AAGGGCAAGAAGAAAGTATC+TGG + chr1_3:34972552-34972571 None:intergenic 40.0%
ATAGAAACCAGAGGATGCAA+GGG + chr1_3:34972570-34972589 None:intergenic 40.0%
AATAGAAACCAGAGGATGCA+AGG + chr1_3:34972571-34972590 None:intergenic 40.0%
TTGCGTTGTTGAATGAATGC+AGG - chr1_3:34972920-34972939 Msa0116090:intron 40.0%
CCACTGTAATATGTCTGATG+CGG - chr1_3:34973250-34973269 Msa0116090:intron 40.0%
! CATTCTAGAAAAAACAGGCC+AGG + chr1_3:34973298-34973317 None:intergenic 40.0%
CCAAACAGCTCATAATGCAT+TGG + chr1_3:34973424-34973443 None:intergenic 40.0%
CCAATGCATTATGAGCTGTT+TGG - chr1_3:34973421-34973440 Msa0116090:CDS 40.0%
CTACATGGTGATAATCGAGA+TGG - chr1_3:34973793-34973812 Msa0116090:intron 40.0%
! TTGCTCGTCTGAAGCATTTA+TGG + chr1_3:34973857-34973876 None:intergenic 40.0%
ATTCTTTAGATGGTGCTCTC+TGG - chr1_3:34973908-34973927 Msa0116090:intron 40.0%
TTCTTTAGATGGTGCTCTCT+GGG - chr1_3:34973909-34973928 Msa0116090:intron 40.0%
!!! GTGCTCTCTGGGATATTTTT+CGG - chr1_3:34973920-34973939 Msa0116090:intron 40.0%
!! CTGCTTTAAAGGAGAGCAAT+GGG + chr1_3:34974007-34974026 None:intergenic 40.0%
AAATGGGGAAACCACTATTG+TGG + chr1_3:34974167-34974186 None:intergenic 40.0%
ACAATAGTGGTTTCCCCATT+TGG - chr1_3:34974166-34974185 Msa0116090:CDS 40.0%
CAATAGTGGTTTCCCCATTT+GGG - chr1_3:34974167-34974186 Msa0116090:CDS 40.0%
ACCCACTTAAGAACCCAAAT+GGG + chr1_3:34974183-34974202 None:intergenic 40.0%
! GAGGTGCCAAAAATTAGAAC+AGG - chr1_3:34974551-34974570 Msa0116090:intron 40.0%
TGTTTAATGAGCTCCACCAA+AGG - chr1_3:34974684-34974703 Msa0116090:intron 40.0%
TTGAACAATTCGTCCTTTGG+TGG + chr1_3:34974700-34974719 None:intergenic 40.0%
CTCTTGAACAATTCGTCCTT+TGG + chr1_3:34974703-34974722 None:intergenic 40.0%
CCAAACTCCATATTAGTAGG+GGG - chr1_3:34974781-34974800 Msa0116090:intron 40.0%
! ATCTGAAGCATGGATAATGC+AGG + chr1_3:34974877-34974896 None:intergenic 40.0%
!! ACCTTATGAGTCGGTTTTGT+AGG - chr1_3:34974987-34975006 Msa0116090:intron 40.0%
!! CCTTATGAGTCGGTTTTGTA+GGG - chr1_3:34974988-34975007 Msa0116090:intron 40.0%
ATGTGCATTCATGTTCGTGA+GGG - chr1_3:34975116-34975135 Msa0116090:intron 40.0%
AATGAAGACACACATCCTCA+AGG - chr1_3:34975348-34975367 Msa0116090:intron 40.0%
TATGTGCGAACAAATCCTTG+AGG + chr1_3:34975366-34975385 None:intergenic 40.0%
CTCATGAAAAGACGAAGAAG+AGG - chr1_3:34975466-34975485 Msa0116090:CDS 40.0%
!! GAAGAGGAAGCTTTGTTTGT+AGG - chr1_3:34975482-34975501 Msa0116090:CDS 40.0%
! TCCAAAATGTAAGTTGGGTG+GGG - chr1_3:34975630-34975649 Msa0116090:CDS 40.0%
ATATTCCCCACTAACCATTG+TGG - chr1_3:34975680-34975699 Msa0116090:CDS 40.0%
AAGTACCACAATGGTTAGTG+GGG + chr1_3:34975688-34975707 None:intergenic 40.0%
CTAAGTACCACAATGGTTAG+TGG + chr1_3:34975690-34975709 None:intergenic 40.0%
! CAACCAATGACTTTTTGGAC+TGG + chr1_3:34975890-34975909 None:intergenic 40.0%
CAGTCCAAAAAGTCATTGGT+TGG - chr1_3:34975888-34975907 Msa0116090:intron 40.0%
CCTTTGTATACAGCAGCAAT+CGG + chr1_3:34975942-34975961 None:intergenic 40.0%
! ACATTAGCCTGTGGTAATGT+AGG - chr1_3:34976012-34976031 Msa0116090:CDS 40.0%
ATGCTCTCGAGTCAGATAAA+AGG + chr1_3:34976062-34976081 None:intergenic 40.0%
GCATAAGAGGAAACTTAAGG+AGG - chr1_3:34976078-34976097 Msa0116090:CDS 40.0%
AGGAAACTTAAGGAGGAGTA+TGG - chr1_3:34976085-34976104 Msa0116090:CDS 40.0%
TTGTAGTCATGCATCAAGGT+TGG - chr1_3:34976700-34976719 Msa0116090:intron 40.0%
! AAGCACTCACCAACATTTTC+AGG + chr1_3:34976742-34976761 None:intergenic 40.0%
TACGGAATTCCTCAGTCAAA+CGG + chr1_3:34976765-34976784 None:intergenic 40.0%
TGTGGTTTATCGGAAGCTTA+CGG + chr1_3:34976783-34976802 None:intergenic 40.0%
! CGACTTGTTCTAGTAGGTTT+AGG + chr1_3:34976957-34976976 None:intergenic 40.0%
! TCAAGACGACTTGTTCTAGT+AGG + chr1_3:34976963-34976982 None:intergenic 40.0%
CTAGAACAAGTCGTCTTGAT+TGG - chr1_3:34976964-34976983 Msa0116090:intron 40.0%
! GTTGGATAAGGTTTGGTTGT+AGG - chr1_3:34977252-34977271 Msa0116090:intron 40.0%
! ATAAGGTTTGGTTGTAGGCA+TGG - chr1_3:34977257-34977276 Msa0116090:intron 40.0%
AATTTATTCAATGCGGGGAC+GGG + chr1_3:34977431-34977450 None:intergenic 40.0%
!!! TAGTTTTATGCATTCGGGAC+GGG - chr1_3:34977633-34977652 Msa0116090:CDS 40.0%
CGATTTCAAAACACGGGTAT+GGG + chr1_3:34977704-34977723 None:intergenic 40.0%
!!! CCATACCCGTGTTTTGAAAT+CGG - chr1_3:34977702-34977721 Msa0116090:CDS 40.0%
!!! CATACCCGTGTTTTGAAATC+GGG - chr1_3:34977703-34977722 Msa0116090:CDS 40.0%
!!! ATACCCGTGTTTTGAAATCG+GGG - chr1_3:34977704-34977723 Msa0116090:CDS 40.0%
TTTCCCCGATTTCAAAACAC+GGG + chr1_3:34977710-34977729 None:intergenic 40.0%
!! TTTTGACTGGGTTTGGGTAT+GGG + chr1_3:34977740-34977759 None:intergenic 40.0%
ATACCCAAACCCAGTCAAAA+CGG - chr1_3:34977740-34977759 Msa0116090:CDS 40.0%
AAAACCCGTCAAATTGGGTT+TGG - chr1_3:34977765-34977784 Msa0116090:CDS 40.0%
!! GTTTTGTTGCCATGCCTATT+TGG - chr1_3:34977813-34977832 Msa0116090:CDS 40.0%
CTACAACAACCAAATAGGCA+TGG + chr1_3:34977825-34977844 None:intergenic 40.0%
ACCAGCGACTGGTATTTATA+AGG - chr1_3:34978130-34978149 Msa0116090:CDS 40.0%
TCCTTATAAATACCAGTCGC+TGG + chr1_3:34978134-34978153 None:intergenic 40.0%
CCAAAGAAACAGCAACAATC+AGG + chr1_3:34978268-34978287 None:intergenic 40.0%
!! CCTGATTGTTGCTGTTTCTT+TGG - chr1_3:34978265-34978284 Msa0116090:CDS 40.0%
!! GTTGCTGTTTCTTTGGTAAC+AGG - chr1_3:34978272-34978291 Msa0116090:CDS 40.0%
TCGACGATCATGATCAGGAA+TGG + chr1_3:34969053-34969072 None:intergenic 45.0%
GTTTCTCGACGATCATGATC+AGG + chr1_3:34969058-34969077 None:intergenic 45.0%
ACACAACCTACTGCCAATGT+TGG - chr1_3:34969076-34969095 Msa0116090:intron 45.0%
GCGTTGTTGAACAACGATGA+AGG - chr1_3:34969163-34969182 Msa0116090:intron 45.0%
TTCCGTTGAAGCTGATGACA+TGG - chr1_3:34969291-34969310 Msa0116090:intron 45.0%
TGCCATGTCATCAGCTTCAA+CGG + chr1_3:34969296-34969315 None:intergenic 45.0%
! CAATGCTGAACAAGAGTGTG+AGG - chr1_3:34969336-34969355 Msa0116090:intron 45.0%
TTATAGTTCGGAAGAGGGTG+AGG - chr1_3:34969414-34969433 Msa0116090:intron 45.0%
GGTGAGGAAAAGAATTGGGA+AGG - chr1_3:34969430-34969449 Msa0116090:intron 45.0%
! GAAGAAGGAGGGTTTTCTTC+CGG - chr1_3:34969463-34969482 Msa0116090:intron 45.0%
TTGCCTCTTTCTCACACAAC+CGG + chr1_3:34969485-34969504 None:intergenic 45.0%
GTTGTGTGAGAAAGAGGCAA+AGG - chr1_3:34969485-34969504 Msa0116090:intron 45.0%
TTACGTGTCAGATTTGGAGG+AGG - chr1_3:34969537-34969556 Msa0116090:intron 45.0%
GAAACGTGGTAGGAAGAAGA+AGG - chr1_3:34969576-34969595 Msa0116090:intron 45.0%
TGATGAAGCTGAACAAGAGG+AGG - chr1_3:34969624-34969643 Msa0116090:intron 45.0%
AAGACAGAGCAGAAGAAACC+TGG - chr1_3:34969655-34969674 Msa0116090:intron 45.0%
TGACGAAGATGAACAAGAGG+GGG - chr1_3:34969714-34969733 Msa0116090:intron 45.0%
GATGAACAAGAGGGGGAAAA+TGG - chr1_3:34969721-34969740 Msa0116090:intron 45.0%
TCAGAGAAATGACAAGGGCA+GGG - chr1_3:34970069-34970088 Msa0116090:intron 45.0%
GTATCCTCACTTGAAAGAGG+AGG - chr1_3:34970465-34970484 Msa0116090:intron 45.0%
! ACTTCCTCCTCTTTCAAGTG+AGG + chr1_3:34970472-34970491 None:intergenic 45.0%
TTGCAATTACCACAGCACAC+TGG + chr1_3:34970508-34970527 None:intergenic 45.0%
! GTGATCATCTGGTTCACTAC+AGG - chr1_3:34970624-34970643 Msa0116090:intron 45.0%
CTCGAACTCATGGTTGTTGT+TGG + chr1_3:34970671-34970690 None:intergenic 45.0%
!!! CTTTTGGGACGAACATTGCA+GGG - chr1_3:34971008-34971027 Msa0116090:CDS 45.0%
! ATAAGCGTGTGTACTGGTAG+GGG - chr1_3:34971077-34971096 Msa0116090:intron 45.0%
TGTTGTTGTGAGCTTCGTTG+TGG - chr1_3:34971255-34971274 Msa0116090:intron 45.0%
GTTGTTGTGAGCTTCGTTGT+GGG - chr1_3:34971256-34971275 Msa0116090:intron 45.0%
CATGAAGATAATCACGGCCT+TGG + chr1_3:34971326-34971345 None:intergenic 45.0%
CAAGGCCGTGATTATCTTCA+TGG - chr1_3:34971324-34971343 Msa0116090:intron 45.0%
CTTGACCACTCACAAATCTC+AGG + chr1_3:34971400-34971419 None:intergenic 45.0%
!!! TCATCATCGGCTTTTGGACA+GGG + chr1_3:34971457-34971476 None:intergenic 45.0%
!!! ATCATCATCGGCTTTTGGAC+AGG + chr1_3:34971458-34971477 None:intergenic 45.0%
!!! CCACAATCATCATCGGCTTT+TGG + chr1_3:34971463-34971482 None:intergenic 45.0%
CCAAAAGCCGATGATGATTG+TGG - chr1_3:34971460-34971479 Msa0116090:intron 45.0%
GAAGTATGCTTCTCAGTTCG+AGG + chr1_3:34971495-34971514 None:intergenic 45.0%
GTTGTCACTGGAATCTTCAC+GGG + chr1_3:34971674-34971693 None:intergenic 45.0%
! TTTCAATGGCACTGGAGCAA+AGG - chr1_3:34971745-34971764 Msa0116090:intron 45.0%
! TTCAATGGCACTGGAGCAAA+GGG - chr1_3:34971746-34971765 Msa0116090:intron 45.0%
ACTGTCCGCCAAAAAACTGT+TGG + chr1_3:34972252-34972271 None:intergenic 45.0%
TTTCTAGATGGTCTGCTGTC+TGG - chr1_3:34972288-34972307 Msa0116090:intron 45.0%
TTCTAGATGGTCTGCTGTCT+GGG - chr1_3:34972289-34972308 Msa0116090:intron 45.0%
GAGGCCAATTAAGCCAATCT+GGG + chr1_3:34972992-34973011 None:intergenic 45.0%
TGAGGCCAATTAAGCCAATC+TGG + chr1_3:34972993-34973012 None:intergenic 45.0%
!! AGATTGGCTTAATTGGCCTC+AGG - chr1_3:34972992-34973011 Msa0116090:intron 45.0%
ATGAACTCAGCACAATGACG+AGG + chr1_3:34973068-34973087 None:intergenic 45.0%
TTTCAGGCAACTTCACAGCA+AGG + chr1_3:34973142-34973161 None:intergenic 45.0%
!!! TATGTTTTTGGGCCCATGTC+TGG + chr1_3:34973176-34973195 None:intergenic 45.0%
! TATGGATTTGCTCAGGAGCT+TGG - chr1_3:34973203-34973222 Msa0116090:intron 45.0%
CCGCATCAGACATATTACAG+TGG + chr1_3:34973253-34973272 None:intergenic 45.0%
! TTGGAAGGTGCAGAGTTTCT+AGG - chr1_3:34973376-34973395 Msa0116090:CDS 45.0%
!! GTCTTGCTCAAGGTGCTTTT+GGG + chr1_3:34973764-34973783 None:intergenic 45.0%
!! TGTCTTGCTCAAGGTGCTTT+TGG + chr1_3:34973765-34973784 None:intergenic 45.0%
!! CTGGGATATTTTTCGGAGAG+AGG - chr1_3:34973927-34973946 Msa0116090:intron 45.0%
GAGAGAGGATGTACCTGAAT+TGG - chr1_3:34973942-34973961 Msa0116090:intron 45.0%
AGAGGATGTACCTGAATTGG+AGG - chr1_3:34973945-34973964 Msa0116090:intron 45.0%
!! CCTGCTTTAAAGGAGAGCAA+TGG + chr1_3:34974008-34974027 None:intergenic 45.0%
!! CCATTGCTCTCCTTTAAAGC+AGG - chr1_3:34974005-34974024 Msa0116090:intron 45.0%
GTCGGCTACATGGAAAACAA+AGG + chr1_3:34974041-34974060 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_3:34974063-34974082 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_3:34974064-34974083 None:intergenic 45.0%
! TCCCCATTTGGGTTCTTAAG+TGG - chr1_3:34974178-34974197 Msa0116090:CDS 45.0%
CCCACTTAAGAACCCAAATG+GGG + chr1_3:34974182-34974201 None:intergenic 45.0%
! CCCCATTTGGGTTCTTAAGT+GGG - chr1_3:34974179-34974198 Msa0116090:CDS 45.0%
GACCCACTTAAGAACCCAAA+TGG + chr1_3:34974184-34974203 None:intergenic 45.0%
!! TTTATTTCGAGGTGCTGGGT+TGG + chr1_3:34974276-34974295 None:intergenic 45.0%
GCACCTCTTTAGCTGATTAC+TGG + chr1_3:34974538-34974557 None:intergenic 45.0%
AGTTTGTGCATGTTGTGGGA+GGG + chr1_3:34974637-34974656 None:intergenic 45.0%
AGAACCTGAGTTCGATTCCT+GGG - chr1_3:34974721-34974740 Msa0116090:intron 45.0%
TTCCTGGGTGGAGTAATTGT+TGG - chr1_3:34974736-34974755 Msa0116090:intron 45.0%
TACCAACAATTACTCCACCC+AGG + chr1_3:34974741-34974760 None:intergenic 45.0%
CCCCCTACTAATATGGAGTT+TGG + chr1_3:34974784-34974803 None:intergenic 45.0%
TGTTAACCCTCAGGTTCCTA+GGG + chr1_3:34974813-34974832 None:intergenic 45.0%
TGAAGCATGGATAATGCAGG+TGG + chr1_3:34974874-34974893 None:intergenic 45.0%
TTATCCATGCTTCAGATGCC+TGG - chr1_3:34974880-34974899 Msa0116090:intron 45.0%
! CCCTACAAAACCGACTCATA+AGG + chr1_3:34974991-34975010 None:intergenic 45.0%
! ACATCTAGAGCGTGGACAAA+TGG + chr1_3:34975100-34975119 None:intergenic 45.0%
! ATGAATGCACATCTAGAGCG+TGG + chr1_3:34975108-34975127 None:intergenic 45.0%
GATGTGCATTCATGTTCGTG+AGG - chr1_3:34975115-34975134 Msa0116090:intron 45.0%
AGGGAAAAACACCTGAAGAG+CGG + chr1_3:34975178-34975197 None:intergenic 45.0%
GAAGGGGCTATTGAATCCTA+AGG + chr1_3:34975399-34975418 None:intergenic 45.0%
TAGGATTCAATAGCCCCTTC+TGG - chr1_3:34975399-34975418 Msa0116090:CDS 45.0%
AGGATTCAATAGCCCCTTCT+GGG - chr1_3:34975400-34975419 Msa0116090:CDS 45.0%
! ACACAATTCTGGGAATCTCC+AGG - chr1_3:34975515-34975534 Msa0116090:CDS 45.0%
! CACAATTCTGGGAATCTCCA+GGG - chr1_3:34975516-34975535 Msa0116090:CDS 45.0%
! CCAAAATGTAAGTTGGGTGG+GGG - chr1_3:34975631-34975650 Msa0116090:CDS 45.0%
CCGATTGCTGCTGTATACAA+AGG - chr1_3:34975939-34975958 Msa0116090:CDS 45.0%
TGCTGCTGTATACAAAGGAC+TGG - chr1_3:34975944-34975963 Msa0116090:CDS 45.0%
! TCTTGATGGACATTAGCCTG+TGG - chr1_3:34976003-34976022 Msa0116090:CDS 45.0%
TAAAAGGTCTGGTCGTGGAT+GGG + chr1_3:34976046-34976065 None:intergenic 45.0%
ATAAAAGGTCTGGTCGTGGA+TGG + chr1_3:34976047-34976066 None:intergenic 45.0%
TCAGATAAAAGGTCTGGTCG+TGG + chr1_3:34976051-34976070 None:intergenic 45.0%
CTCGAGTCAGATAAAAGGTC+TGG + chr1_3:34976057-34976076 None:intergenic 45.0%
! ATCTGACTCGAGAGCATAAG+AGG - chr1_3:34976065-34976084 Msa0116090:CDS 45.0%
!!! ATGTTTTTTGGGAAGTGGGC+TGG - chr1_3:34976131-34976150 Msa0116090:intron 45.0%
TGACAGTCACCATTGCTTGT+AGG - chr1_3:34976202-34976221 Msa0116090:intron 45.0%
!!! GATGCTGTTTTCATTCCTGC+CGG - chr1_3:34976259-34976278 Msa0116090:intron 45.0%
GTAAGCTTCCGATAAACCAC+AGG - chr1_3:34976782-34976801 Msa0116090:CDS 45.0%
! TTGGTGGACCTGTGGTTTAT+CGG + chr1_3:34976793-34976812 None:intergenic 45.0%
TCGTCTTGATTGGGAGCTTT+AGG - chr1_3:34976974-34976993 Msa0116090:intron 45.0%
TTTGGTTGTAGGCATGGCAA+TGG - chr1_3:34977263-34977282 Msa0116090:intron 45.0%
TTGGTTGTAGGCATGGCAAT+GGG - chr1_3:34977264-34977283 Msa0116090:intron 45.0%
ATGAGAATCGAGTATGGGGA+CGG + chr1_3:34977317-34977336 None:intergenic 45.0%
TTCAATTTCCCATCCCCGTT+GGG + chr1_3:34977365-34977384 None:intergenic 45.0%
ATTTATTCAATGCGGGGACG+GGG + chr1_3:34977430-34977449 None:intergenic 45.0%
TTCAAAACACGGGTATGGGA+CGG + chr1_3:34977700-34977719 None:intergenic 45.0%
CCGATTTCAAAACACGGGTA+TGG + chr1_3:34977705-34977724 None:intergenic 45.0%
!!! GTTTTGACTGGGTTTGGGTA+TGG + chr1_3:34977741-34977760 None:intergenic 45.0%
TACCCAAACCCAGTCAAAAC+GGG - chr1_3:34977741-34977760 Msa0116090:CDS 45.0%
!!! TTCCCGTTTTGACTGGGTTT+GGG + chr1_3:34977746-34977765 None:intergenic 45.0%
!!! TTTCCCGTTTTGACTGGGTT+TGG + chr1_3:34977747-34977766 None:intergenic 45.0%
!!! GGGTTTTTCCCGTTTTGACT+GGG + chr1_3:34977752-34977771 None:intergenic 45.0%
ACGGGAAAAACCCGTCAAAT+TGG - chr1_3:34977759-34977778 Msa0116090:CDS 45.0%
CGGGAAAAACCCGTCAAATT+GGG - chr1_3:34977760-34977779 Msa0116090:CDS 45.0%
CGAACCAAACCCAATTTGAC+GGG + chr1_3:34977772-34977791 None:intergenic 45.0%
CCGAACCAAACCCAATTTGA+CGG + chr1_3:34977773-34977792 None:intergenic 45.0%
! CCGTCAAATTGGGTTTGGTT+CGG - chr1_3:34977770-34977789 Msa0116090:CDS 45.0%
! CGTCAAATTGGGTTTGGTTC+GGG - chr1_3:34977771-34977790 Msa0116090:CDS 45.0%
!! AAATTGGGTTTGGTTCGGGT+GGG - chr1_3:34977775-34977794 Msa0116090:CDS 45.0%
TGCAATCATGTGTTGGAGTC+AGG - chr1_3:34977994-34978013 Msa0116090:CDS 45.0%
! CATGTGTTGGAGTCAGGTTT+TGG - chr1_3:34978000-34978019 Msa0116090:CDS 45.0%
CCAATAAGCAACTGCTGACA+CGG + chr1_3:34978227-34978246 None:intergenic 45.0%
CGTGTCAGCAGTTGCTTATT+GGG - chr1_3:34978225-34978244 Msa0116090:CDS 45.0%
TTGCAAACTTCCTCTCCCTT+TGG - chr1_3:34978361-34978380 Msa0116090:five_prime_UTR 45.0%
!! TGTTTAAAAAATATTATTAT+TGG - chr1_3:34970251-34970270 Msa0116090:intron 5.0%
!!! ATTTTATTTTAATTCATTTA+CGG - chr1_3:34972037-34972056 Msa0116090:intron 5.0%
!! TTAATTATATAAAAATTGAT+TGG - chr1_3:34977174-34977193 Msa0116090:CDS 5.0%
CAAAGTCACACTCACCGTTC+CGG - chr1_3:34969015-34969034 Msa0116090:intron 50.0%
! GGAATGGATTCATCTGGGTC+CGG + chr1_3:34969037-34969056 None:intergenic 50.0%
GATGACGTGGCACAAGCTAT+CGG - chr1_3:34969124-34969143 Msa0116090:intron 50.0%
! CAACGATGAAGGTGATGACG+TGG - chr1_3:34969174-34969193 Msa0116090:intron 50.0%
!! AACGGTGGTGTTGTTGTCGA+CGG - chr1_3:34969258-34969277 Msa0116090:intron 50.0%
TTGTTGTCGACGGACGATGA+AGG - chr1_3:34969268-34969287 Msa0116090:intron 50.0%
AGCTGATGACATGGCAGCTA+AGG - chr1_3:34969300-34969319 Msa0116090:intron 50.0%
CTTCCGGTTGTGTGAGAAAG+AGG - chr1_3:34969479-34969498 Msa0116090:intron 50.0%
TGAGAAAGAGGCAAAGGCCT+AGG - chr1_3:34969491-34969510 Msa0116090:intron 50.0%
TGAAGCTGAACAAGAGGAGG+AGG - chr1_3:34969627-34969646 Msa0116090:intron 50.0%
GTCAGAGAAATGACAAGGGC+AGG - chr1_3:34970068-34970087 Msa0116090:intron 50.0%
GAAAGAGGAGGAAGTTGCTG+AGG - chr1_3:34970477-34970496 Msa0116090:CDS 50.0%
ACTTGGAGAGCTCGAACTCA+TGG + chr1_3:34970681-34970700 None:intergenic 50.0%
! GTTGCTTTGCCCATGCTTCA+TGG - chr1_3:34970862-34970881 Msa0116090:intron 50.0%
!!! GCTTTTGGGACGAACATTGC+AGG - chr1_3:34971007-34971026 Msa0116090:CDS 50.0%
CTTCGTTGTGGGAAGCTTCT+AGG - chr1_3:34971267-34971286 Msa0116090:intron 50.0%
GGCCGTGATTATCTTCATGG+TGG - chr1_3:34971327-34971346 Msa0116090:intron 50.0%
CCACTCACAAATCTCAGGCT+GGG + chr1_3:34971395-34971414 None:intergenic 50.0%
ACCACTCACAAATCTCAGGC+TGG + chr1_3:34971396-34971415 None:intergenic 50.0%
GCCGATGATGATTGTGGTCA+TGG - chr1_3:34971466-34971485 Msa0116090:intron 50.0%
! TCAATGGCACTGGAGCAAAG+GGG - chr1_3:34971747-34971766 Msa0116090:intron 50.0%
AATGCACGCCACATGACAAG+CGG + chr1_3:34971826-34971845 None:intergenic 50.0%
ACACAAATGGTCGCCCAGAT+TGG - chr1_3:34972976-34972995 Msa0116090:intron 50.0%
!! GTCGCCCAGATTGGCTTAAT+TGG - chr1_3:34972985-34973004 Msa0116090:intron 50.0%
AGCACCTTGAGCAAGACAAG+AGG - chr1_3:34973767-34973786 Msa0116090:intron 50.0%
GCACCTTGAGCAAGACAAGA+GGG - chr1_3:34973768-34973787 Msa0116090:intron 50.0%
CAAGACAAGAGGGAGCTACA+TGG - chr1_3:34973778-34973797 Msa0116090:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1_3:34974059-34974078 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr1_3:34974065-34974084 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr1_3:34974062-34974081 Msa0116090:CDS 50.0%
CAGTTTGTGCATGTTGTGGG+AGG + chr1_3:34974638-34974657 None:intergenic 50.0%
GAGAACCTGAGTTCGATTCC+TGG - chr1_3:34974720-34974739 Msa0116090:intron 50.0%
GTTAACCCTCAGGTTCCTAG+GGG + chr1_3:34974812-34974831 None:intergenic 50.0%
GTGTTAACCCTCAGGTTCCT+AGG + chr1_3:34974814-34974833 None:intergenic 50.0%
GACATACCACTAGTCGACGT+GGG + chr1_3:34974935-34974954 None:intergenic 50.0%
AGACATACCACTAGTCGACG+TGG + chr1_3:34974936-34974955 None:intergenic 50.0%
!! CGGTTTTGTAGGGTCGAGTT+AGG - chr1_3:34974998-34975017 Msa0116090:intron 50.0%
AGAGCGTGGACAAATGGAAG+TGG + chr1_3:34975094-34975113 None:intergenic 50.0%
! GTGTTTTTCCCTGAGCGTGA+GGG - chr1_3:34975186-34975205 Msa0116090:intron 50.0%
! TCCCACATCGACTAGAGATC+TGG - chr1_3:34975222-34975241 Msa0116090:intron 50.0%
GCCAGATCTCTAGTCGATGT+GGG + chr1_3:34975226-34975245 None:intergenic 50.0%
! CTCTCATAGTTCTGTTGCCC+TGG + chr1_3:34975536-34975555 None:intergenic 50.0%
! CCCCCACCCAACTTACATTT+TGG + chr1_3:34975634-34975653 None:intergenic 50.0%
GGCTCGATTCCTACAAGCAA+TGG + chr1_3:34976214-34976233 None:intergenic 50.0%
TGCTTGTAGGAATCGAGCCT+TGG - chr1_3:34976215-34976234 Msa0116090:CDS 50.0%
!! TCTGACTTGGTGAGGACAAC+CGG + chr1_3:34976281-34976300 None:intergenic 50.0%
TGAGTGCTTCCGTTTGACTG+AGG - chr1_3:34976753-34976772 Msa0116090:CDS 50.0%
GATAAACCACAGGTCCACCA+AGG - chr1_3:34976792-34976811 Msa0116090:CDS 50.0%
TGGTTGTAGGCATGGCAATG+GGG - chr1_3:34977265-34977284 Msa0116090:intron 50.0%
TGAGAATCGAGTATGGGGAC+GGG + chr1_3:34977316-34977335 None:intergenic 50.0%
TTGGGTATGGGTAGGGTAAC+GGG + chr1_3:34977347-34977366 None:intergenic 50.0%
GTTGGGTATGGGTAGGGTAA+CGG + chr1_3:34977348-34977367 None:intergenic 50.0%
GTTACCCTACCCATACCCAA+CGG - chr1_3:34977347-34977366 Msa0116090:intron 50.0%
TTACCCTACCCATACCCAAC+GGG - chr1_3:34977348-34977367 Msa0116090:intron 50.0%
GTTCAATTTCCCATCCCCGT+TGG + chr1_3:34977366-34977385 None:intergenic 50.0%
! TTATGCATTCGGGACGGGTT+TGG - chr1_3:34977638-34977657 Msa0116090:CDS 50.0%
! TATGCATTCGGGACGGGTTT+GGG - chr1_3:34977639-34977658 Msa0116090:CDS 50.0%
TCAAAACACGGGTATGGGAC+GGG + chr1_3:34977699-34977718 None:intergenic 50.0%
CTGGGTTTGGGTATGGGTTT+GGG + chr1_3:34977734-34977753 None:intergenic 50.0%
ACTGGGTTTGGGTATGGGTT+TGG + chr1_3:34977735-34977754 None:intergenic 50.0%
!! CGGGTTTTTCCCGTTTTGAC+TGG + chr1_3:34977753-34977772 None:intergenic 50.0%
!! CAAATTGGGTTTGGTTCGGG+TGG - chr1_3:34977774-34977793 Msa0116090:CDS 50.0%
!! GTGTTGGAGTCAGGTTTTGG+AGG - chr1_3:34978003-34978022 Msa0116090:CDS 50.0%
!!! TGGAGTCAGGTTTTGGAGGA+TGG - chr1_3:34978007-34978026 Msa0116090:CDS 50.0%
TTAAGCACTAGACCAGCGAC+TGG - chr1_3:34978119-34978138 Msa0116090:CDS 50.0%
CCGTGTCAGCAGTTGCTTAT+TGG - chr1_3:34978224-34978243 Msa0116090:CDS 50.0%
GGATTCATCTGGGTCCGGAA+CGG + chr1_3:34969032-34969051 None:intergenic 55.0%
ACCTACTGCCAATGTTGGCG+CGG - chr1_3:34969081-34969100 Msa0116090:intron 55.0%
TGCCAATGTTGGCGCGGAAA+CGG - chr1_3:34969087-34969106 Msa0116090:intron 55.0%
TACCGTTTCCGCGCCAACAT+TGG + chr1_3:34969092-34969111 None:intergenic 55.0%
GCGGAAACGGTACCGTTGAA+GGG - chr1_3:34969100-34969119 Msa0116090:intron 55.0%
! ACCGTTGAAGGGTGATGACG+TGG - chr1_3:34969111-34969130 Msa0116090:intron 55.0%
GCCACGTCATCACCCTTCAA+CGG + chr1_3:34969115-34969134 None:intergenic 55.0%
! CGATGAAGGTGATGACGTGG+TGG - chr1_3:34969177-34969196 Msa0116090:intron 55.0%
GGATGTTGGCGCAAAAACGG+TGG - chr1_3:34969243-34969262 Msa0116090:intron 55.0%
!! GAATTGGGAAGGTGCTGACG+TGG - chr1_3:34969441-34969460 Msa0116090:intron 55.0%
!! GAAGGTGCTGACGTGGAAGA+AGG - chr1_3:34969448-34969467 Msa0116090:intron 55.0%
! GTGCTGACGTGGAAGAAGGA+GGG - chr1_3:34969452-34969471 Msa0116090:intron 55.0%
CGTTGTGGGAAGCTTCTAGG+TGG - chr1_3:34971270-34971289 Msa0116090:intron 55.0%
CCCAGCCTGAGATTTGTGAG+TGG - chr1_3:34971392-34971411 Msa0116090:intron 55.0%
GTGAGTGGTCAAGATTCGGG+TGG - chr1_3:34971407-34971426 Msa0116090:intron 55.0%
GGGTGGCATGCAGATAGTGA+TGG - chr1_3:34971424-34971443 Msa0116090:intron 55.0%
CTTCTTGCCCTTGCATCCTC+TGG - chr1_3:34972560-34972579 Msa0116090:intron 55.0%
TTTGCTCAGGAGCTTGGACG+TGG - chr1_3:34973209-34973228 Msa0116090:intron 55.0%
GCTCCCTCTTGTCTTGCTCA+AGG + chr1_3:34973774-34973793 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1_3:34974051-34974070 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_3:34974050-34974069 Msa0116090:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_3:34974051-34974070 Msa0116090:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_3:34974057-34974076 Msa0116090:CDS 55.0%
!! ATTTCGAGGTGCTGGGTTGG+AGG + chr1_3:34974273-34974292 None:intergenic 55.0%
TGTGCATGTTGTGGGAGGGA+GGG + chr1_3:34974633-34974652 None:intergenic 55.0%
TTGTGCATGTTGTGGGAGGG+AGG + chr1_3:34974634-34974653 None:intergenic 55.0%
ACCTGAGTTCGATTCCTGGG+TGG - chr1_3:34974724-34974743 Msa0116090:intron 55.0%
TCCACCCAGGAATCGAACTC+AGG + chr1_3:34974728-34974747 None:intergenic 55.0%
GGAAGGGCCCCCTACTAATA+TGG + chr1_3:34974791-34974810 None:intergenic 55.0%
! AGGACCAGGCATCTGAAGCA+TGG + chr1_3:34974887-34974906 None:intergenic 55.0%
ATGCCTGGTCCTCAGCATGA+TGG - chr1_3:34974895-34974914 Msa0116090:intron 55.0%
TGCCTGGTCCTCAGCATGAT+GGG - chr1_3:34974896-34974915 Msa0116090:intron 55.0%
CAACCAACCCCATCATGCTG+AGG + chr1_3:34974907-34974926 None:intergenic 55.0%
! GGTGTTTTTCCCTGAGCGTG+AGG - chr1_3:34975185-34975204 Msa0116090:intron 55.0%
AACACTCTCCCTCACGCTCA+GGG + chr1_3:34975197-34975216 None:intergenic 55.0%
TAACACTCTCCCTCACGCTC+AGG + chr1_3:34975198-34975217 None:intergenic 55.0%
GGCCAGATCTCTAGTCGATG+TGG + chr1_3:34975227-34975246 None:intergenic 55.0%
! TCGTAGTTCTGTTGCCCTGG+AGG + chr1_3:34975428-34975447 None:intergenic 55.0%
! CTCTCGTAGTTCTGTTGCCC+TGG + chr1_3:34975431-34975450 None:intergenic 55.0%
ACAGACCTCCAACCTGTCCT+TGG + chr1_3:34976812-34976831 None:intergenic 55.0%
TTGTAGGCATGGCAATGGGG+CGG - chr1_3:34977268-34977287 Msa0116090:intron 55.0%
GAGAATCGAGTATGGGGACG+GGG + chr1_3:34977315-34977334 None:intergenic 55.0%
TACCCTACCCATACCCAACG+GGG - chr1_3:34977349-34977368 Msa0116090:intron 55.0%
ATCCCCGTTGGGTATGGGTA+GGG + chr1_3:34977354-34977373 None:intergenic 55.0%
TACCCATACCCAACGGGGAT+GGG - chr1_3:34977354-34977373 Msa0116090:intron 55.0%
TTCCCATCCCCGTTGGGTAT+GGG + chr1_3:34977359-34977378 None:intergenic 55.0%
TTTCCCATCCCCGTTGGGTA+TGG + chr1_3:34977360-34977379 None:intergenic 55.0%
ATACTCGAACCCGTTGGGGA+CGG + chr1_3:34977396-34977415 None:intergenic 55.0%
! ATTCGGGACGGGTTTGGGTA+TGG - chr1_3:34977644-34977663 Msa0116090:CDS 55.0%
! TTCGGGACGGGTTTGGGTAT+GGG - chr1_3:34977645-34977664 Msa0116090:CDS 55.0%
! GACGGGTTTGGGTATGGGTT+CGG - chr1_3:34977650-34977669 Msa0116090:CDS 55.0%
ACGGGTTTGGGTATGGGTTC+GGG - chr1_3:34977651-34977670 Msa0116090:CDS 55.0%
TTTGGGTATGGGTTCGGGGT+GGG - chr1_3:34977656-34977675 Msa0116090:CDS 55.0%
!! GGGACGGGTAACGGGTATAT+AGG + chr1_3:34977684-34977703 None:intergenic 55.0%
!! TTGGTTCGGGTGGGTAACCA+CGG - chr1_3:34977784-34977803 Msa0116090:CDS 55.0%
GGCAACAAAACCCATACCCG+TGG + chr1_3:34977804-34977823 None:intergenic 55.0%
TCCGCGCCAACATTGGCAGT+AGG + chr1_3:34969085-34969104 None:intergenic 60.0%
CGCGGAAACGGTACCGTTGA+AGG - chr1_3:34969099-34969118 Msa0116090:intron 60.0%
!! GGTGCTGACGTGGAAGAAGG+AGG - chr1_3:34969451-34969470 Msa0116090:intron 60.0%
GAGGCATGTCCAGTGTGCTG+TGG - chr1_3:34970496-34970515 Msa0116090:CDS 60.0%
TCAGGCTGGGCAGCAGAATG+AGG + chr1_3:34971382-34971401 None:intergenic 60.0%
GCTGGGAACCGCTTGTCATG+TGG - chr1_3:34971815-34971834 Msa0116090:intron 60.0%
CCCTCAGGTTCCTAGGGGAA+GGG + chr1_3:34974807-34974826 None:intergenic 60.0%
CCCTTCCCCTAGGAACCTGA+GGG - chr1_3:34974804-34974823 Msa0116090:intron 60.0%
ACCCTCAGGTTCCTAGGGGA+AGG + chr1_3:34974808-34974827 None:intergenic 60.0%
GCCTGGTCCTCAGCATGATG+GGG - chr1_3:34974897-34974916 Msa0116090:intron 60.0%
ACCCCATCATGCTGAGGACC+AGG + chr1_3:34974901-34974920 None:intergenic 60.0%
! GGTCCTCAGCATGATGGGGT+TGG - chr1_3:34974901-34974920 Msa0116090:intron 60.0%
! GAGAGTCCCACGTCGACTAG+TGG - chr1_3:34974926-34974945 Msa0116090:intron 60.0%
TGCCCTGGAGGTTCCCAGAA+GGG + chr1_3:34975416-34975435 None:intergenic 60.0%
TTGCCCTGGAGGTTCCCAGA+AGG + chr1_3:34975417-34975436 None:intergenic 60.0%
! ACTTGGTGAGGACAACCGGC+AGG + chr1_3:34976277-34976296 None:intergenic 60.0%
ACCACAGGTCCACCAAGGAC+AGG - chr1_3:34976797-34976816 Msa0116090:CDS 60.0%
! ACCTGTCCTTGGTGGACCTG+TGG + chr1_3:34976801-34976820 None:intergenic 60.0%
CAGGTCCACCAAGGACAGGT+TGG - chr1_3:34976801-34976820 Msa0116090:CDS 60.0%
! GTCCACCAAGGACAGGTTGG+AGG - chr1_3:34976804-34976823 Msa0116090:CDS 60.0%
GACCTCCAACCTGTCCTTGG+TGG + chr1_3:34976809-34976828 None:intergenic 60.0%
TGTAGGCATGGCAATGGGGC+GGG - chr1_3:34977269-34977288 Msa0116090:intron 60.0%
CATCCCCGTTGGGTATGGGT+AGG + chr1_3:34977355-34977374 None:intergenic 60.0%
CTACCCATACCCAACGGGGA+TGG - chr1_3:34977353-34977372 Msa0116090:intron 60.0%
TACTCGAACCCGTTGGGGAC+GGG + chr1_3:34977395-34977414 None:intergenic 60.0%
GGGGATACTCGAACCCGTTG+GGG + chr1_3:34977400-34977419 None:intergenic 60.0%
CGGGGATACTCGAACCCGTT+GGG + chr1_3:34977401-34977420 None:intergenic 60.0%
TTCAATGCGGGGACGGGGAT+GGG + chr1_3:34977425-34977444 None:intergenic 60.0%
ATTCAATGCGGGGACGGGGA+TGG + chr1_3:34977426-34977445 None:intergenic 60.0%
CGGGTTTGGGTATGGGTTCG+GGG - chr1_3:34977652-34977671 Msa0116090:CDS 60.0%
GTTTGGGTATGGGTTCGGGG+TGG - chr1_3:34977655-34977674 Msa0116090:CDS 60.0%
ACGGGTATGGGACGGGTAAC+GGG + chr1_3:34977692-34977711 None:intergenic 60.0%
CACGGGTATGGGACGGGTAA+CGG + chr1_3:34977693-34977712 None:intergenic 60.0%
! TGGTTCGGGTGGGTAACCAC+GGG - chr1_3:34977785-34977804 Msa0116090:CDS 60.0%
GGGTGGGTAACCACGGGTAT+GGG - chr1_3:34977791-34977810 Msa0116090:CDS 60.0%
TAGTAGGGGGCCCTTCCCCT+AGG - chr1_3:34974794-34974813 Msa0116090:intron 65.0%
GCCCTTCCCCTAGGAACCTG+AGG - chr1_3:34974803-34974822 Msa0116090:intron 65.0%
! AGCCCCTTCTGGGAACCTCC+AGG - chr1_3:34975410-34975429 Msa0116090:CDS 65.0%
! GCCCCTTCTGGGAACCTCCA+GGG - chr1_3:34975411-34975430 Msa0116090:CDS 65.0%
GCCCTGGAGGTTCCCAGAAG+GGG + chr1_3:34975415-34975434 None:intergenic 65.0%
GTAGGCATGGCAATGGGGCG+GGG - chr1_3:34977270-34977289 Msa0116090:intron 65.0%
AACCCCATCCCCGTCCCCAA+CGG - chr1_3:34977383-34977402 Msa0116090:intron 65.0%
AACCCGTTGGGGACGGGGAT+GGG + chr1_3:34977389-34977408 None:intergenic 65.0%
ACTCGAACCCGTTGGGGACG+GGG + chr1_3:34977394-34977413 None:intergenic 65.0%
GCGGGGATACTCGAACCCGT+TGG + chr1_3:34977402-34977421 None:intergenic 65.0%
TCAATGCGGGGACGGGGATG+GGG + chr1_3:34977424-34977443 None:intergenic 65.0%
CGGGTGGGTAACCACGGGTA+TGG - chr1_3:34977790-34977809 Msa0116090:CDS 65.0%
GCATGGCAATGGGGCGGGGT+GGG - chr1_3:34977274-34977293 Msa0116090:intron 70.0%
CATGGCAATGGGGCGGGGTG+GGG - chr1_3:34977275-34977294 Msa0116090:intron 70.0%
ACCCCATCCCCGTCCCCAAC+GGG - chr1_3:34977384-34977403 Msa0116090:intron 70.0%
ACCCGTTGGGGACGGGGATG+GGG + chr1_3:34977388-34977407 None:intergenic 70.0%
GAACCCGTTGGGGACGGGGA+TGG + chr1_3:34977390-34977409 None:intergenic 70.0%
GGCATGGCAATGGGGCGGGG+TGG - chr1_3:34977273-34977292 Msa0116090:intron 75.0%
GCAATGGGGCGGGGTGGGGA+CGG - chr1_3:34977279-34977298 Msa0116090:intron 75.0%
CAATGGGGCGGGGTGGGGAC+GGG - chr1_3:34977280-34977299 Msa0116090:intron 75.0%
ATGCGGGGACGGGGATGGGG+CGG + chr1_3:34977421-34977440 None:intergenic 75.0%
! TGCGGGGACGGGGATGGGGC+GGG + chr1_3:34977420-34977439 None:intergenic 80.0%
! GCGGGGACGGGGATGGGGCG+GGG + chr1_3:34977419-34977438 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 34968912 34978389 34968912 ID=Msa0116090;Name=Msa0116090
chr1_3 mRNA 34968912 34978389 34968912 ID=Msa0116090-mRNA-1;Parent=Msa0116090;Name=Msa0116090-mRNA-1;_AED=0.30;_eAED=0.31;_QI=56|0.81|0.66|1|1|1|12|0|1014
chr1_3 exon 34968912 34969007 34968912 ID=Msa0116090-mRNA-1:exon:11216;Parent=Msa0116090-mRNA-1
chr1_3 exon 34970476 34970595 34970476 ID=Msa0116090-mRNA-1:exon:11215;Parent=Msa0116090-mRNA-1
chr1_3 exon 34970992 34971093 34970992 ID=Msa0116090-mRNA-1:exon:11214;Parent=Msa0116090-mRNA-1
chr1_3 exon 34973275 34973610 34973275 ID=Msa0116090-mRNA-1:exon:11213;Parent=Msa0116090-mRNA-1
chr1_3 exon 34974030 34974359 34974030 ID=Msa0116090-mRNA-1:exon:11212;Parent=Msa0116090-mRNA-1
chr1_3 exon 34975383 34975904 34975383 ID=Msa0116090-mRNA-1:exon:11211;Parent=Msa0116090-mRNA-1
chr1_3 exon 34975939 34976119 34975939 ID=Msa0116090-mRNA-1:exon:11210;Parent=Msa0116090-mRNA-1
chr1_3 exon 34976209 34976272 34976209 ID=Msa0116090-mRNA-1:exon:11209;Parent=Msa0116090-mRNA-1
chr1_3 exon 34976517 34976655 34976517 ID=Msa0116090-mRNA-1:exon:11208;Parent=Msa0116090-mRNA-1
chr1_3 exon 34976737 34976836 34976737 ID=Msa0116090-mRNA-1:exon:11207;Parent=Msa0116090-mRNA-1
chr1_3 exon 34977152 34977267 34977152 ID=Msa0116090-mRNA-1:exon:11206;Parent=Msa0116090-mRNA-1
chr1_3 exon 34977395 34978389 34977395 ID=Msa0116090-mRNA-1:exon:11205;Parent=Msa0116090-mRNA-1
chr1_3 five_prime_UTR 34978334 34978389 34978334 ID=Msa0116090-mRNA-1:five_prime_utr;Parent=Msa0116090-mRNA-1
chr1_3 CDS 34977395 34978333 34977395 ID=Msa0116090-mRNA-1:cds;Parent=Msa0116090-mRNA-1
chr1_3 CDS 34977152 34977267 34977152 ID=Msa0116090-mRNA-1:cds;Parent=Msa0116090-mRNA-1
chr1_3 CDS 34976737 34976836 34976737 ID=Msa0116090-mRNA-1:cds;Parent=Msa0116090-mRNA-1
chr1_3 CDS 34976517 34976655 34976517 ID=Msa0116090-mRNA-1:cds;Parent=Msa0116090-mRNA-1
chr1_3 CDS 34976209 34976272 34976209 ID=Msa0116090-mRNA-1:cds;Parent=Msa0116090-mRNA-1
chr1_3 CDS 34975939 34976119 34975939 ID=Msa0116090-mRNA-1:cds;Parent=Msa0116090-mRNA-1
chr1_3 CDS 34975383 34975904 34975383 ID=Msa0116090-mRNA-1:cds;Parent=Msa0116090-mRNA-1
chr1_3 CDS 34974030 34974359 34974030 ID=Msa0116090-mRNA-1:cds;Parent=Msa0116090-mRNA-1
chr1_3 CDS 34973275 34973610 34973275 ID=Msa0116090-mRNA-1:cds;Parent=Msa0116090-mRNA-1
chr1_3 CDS 34970992 34971093 34970992 ID=Msa0116090-mRNA-1:cds;Parent=Msa0116090-mRNA-1
chr1_3 CDS 34970476 34970595 34970476 ID=Msa0116090-mRNA-1:cds;Parent=Msa0116090-mRNA-1
chr1_3 CDS 34968912 34969007 34968912 ID=Msa0116090-mRNA-1:cds;Parent=Msa0116090-mRNA-1
Gene Sequence

>Msa0116090

ATGGCGGAGGAAGAGAACAACCACACAGTCACATATACAGTGAAAATCAAAGTCACACTCACCGTTCCGGACCCAGATGAATCCATTCCTGATCATGATCGTCGAGAAACACAACCTACTGCCAATGTTGGCGCGGAAACGGTACCGTTGAAGGGTGATGACGTGGCACAAGCTATCGGTGTTAGAGCTGAAACGGCGTTGTTGAACAACGATGAAGGTGATGACGTGGTGGAAGCAGCTGAAGAATCTATTCCTGATCGAGAAAAACAAGATATGGATGTTGGCGCAAAAACGGTGGTGTTGTTGTCGACGGACGATGAAGGTTCCGTTGAAGCTGATGACATGGCAGCTAAGGATTCTGATGAAAACAATGCTGAACAAGAGTGTGAGGAAAAAAAAGTCATTAAAGAGAAGAAGAGAGCTGGTAGAAAAAGAAAAAAGACAGTTTATAGTTCGGAAGAGGGTGAGGAAAAGAATTGGGAAGGTGCTGACGTGGAAGAAGGAGGGTTTTCTTCCGGTTGTGTGAGAAAGAGGCAAAGGCCTAGGAAGATTAAATCGTTGAAGGAAGATTACGTGTCAGATTTGGAGGAGGATATGAAGAAAAAGTGGAAACGTGGTAGGAAGAAGAAGGTCATAATTGAGGTTTCTGATGAGAATGATGAAGCTGAACAAGAGGAGGAGGATGTGAAGACAGAGCAGAAGAAACCTGGTAGAAAAAGGAAAGTAGGTTATGGTTCTGAAGAAAATGACGAAGATGAACAAGAGGGGGAAAATGGTAAAAATTTTAAGATTGTTGAGAATGAATTGATCAGTGAAAAGAATTTGGAGAGTGATGTTTTATCAGATGATAATAAAGGTTATTCTTTAAGGACTGATAGAAAAGTGAAAGTTAAAAGCATTGAACAGCCGAAGCAAAAAATAAACAAACGGAATCCAAAGTGGATTGAAGAGGAGTCCTTAATGTGCCATCAATGTCAGAGAAATGACAAGGGCAGGGTTGTGAGATGCACAAAATGCAAACGGAAAAGATTTTGCATACCTTGTTTAAACAATTGGTATCCTCACTTGAAAGAGGAGGAAGTTGCTGAGGCATGTCCAGTGTGCTGTGGTAATTGCAATTGCAAAGCATGCTTGCGATCATGTGCACTTATCAAAGAAATTAAAATGAAGACAGAAACCAACAACAACCATGAGTTCGAGCTCTCCAAGTATATGCTGAAAGAACTTCTTCCATATTTAAGACGATTGGATGAAGAACAAATGGTCGAGAAGGAGATAGAAGCAAAGAGAAAAGGGCTCTCACATTCTAAGCTAAAAGTAAAAGCCGCAGATTACCCTAAAAATAAGCGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGACTACCACAGAAGCTGTACAAAATGCTCTTTTAACATTTGTCTTCTTTGTTGTTGTGAGCTTCGTTGTGGGAAGCTTCTAGGTGGTACAGATCCAATTGAGTTTGAGTTTATCTTCCAAGGCCGTGATTATCTTCATGGTGGAAAAGAAGAGAGGCCTGAGATTTGTGAGTGGTCAAGATTCGGGTGGCATGCAGATAGTGATGGTAGCATTCCCTGTCCAAAAGCCGATGATGATTGTGGTCATGGTTTCCTCGAACTGAGAAGCATACTTCCACCAAATTGCATCTCTGAGTTAGTATGTAAAGCGAAAGAACTCGAAGAAACAATTAGGCTTCAAGATGCAGAGGAGACATTTGATAGTATGTGTTCTTGTTTGAAGCCTGTTAGGAATGCAACTGATATACACAATAACACAAGGAAGGCAGCTTCCCGTGAAGATTCCAGTGACAACTTCTTGTATTCCCCCAGAGCTTTAAATTTACGTCATGAGGATTTAAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTATCAGCAATGTACTTGAATGTACAACTGGTTTAAGCTGGGAACCGCTTGTCATGTGGCGTGCATTCCGTCAGATAAGAAATACCAAGCACAAAACACTTTTGGATGTGGAGGCAATTGATTGCTTAGATTGGTGTGAGGAAAATATTAATGTGCACCAATTCTTTACTGGGTACACAAATGGTCGCCCAGATTGGCTTAATTGGCCTCAGGTTTTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTAGGGAAAGTTTGCCTCGTCATTGTGCTGAGTTCATATCTTCCTTGCCGTATAAAGAATATACAGATCCTTTCAAAGGCATTCTTAACCTTGCTGTGAAGTTGCCTGAAAATGTTCTAAAGCCAGACATGGGCCCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGACGTGGTGATTCTGTGACTAAGCTCCACTGTAATATGTCTGATGCGGTAAATGTGTTGACTCATATTGCTGAAGTGAAATTGAAATCTGAGGGCATTGCTGCCATTAAGAAACTGACCCAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATAATCGAGATGGAGAGACCAACGTTGACATGTTTGATAATTCATCTTCTTCCATAAATGCTTCAGACGAGCAAAATAGTGTTCGAGTTTTGGAAAATAGGGGTGATTCTTTAGATGGTGCTCTCTGGGATATTTTTCGGAGAGAGGATGTACCTGAATTGGAGGAATATTTAAAGAAGCATTTCAGAGAGTTTAGGCATGCCCATTGCTCTCCTTTAAAGCAGTCACCATTGCTTGTAGGAATCGAGCCTTGGACTTTTATTCAGAAGCTAGGAGATGCTGTTTTCATTCCTGCCGGTTGTCCTCACCAAGTCAGAAATCTAAAGTCATGCATCAAGGTTGGACTTGATTTTGTCTCACCTGAAAATGTTGGTGAGTGCTTCCGTTTGACTGAGGAATTCCGTAAGCTTCCGATAAACCACAGGTCCACCAAGGACAGGTTGGAGGTGAAGAAAATGACTATATATGCTATGCTTGATGTGGTTAACAAATTGGAGAAAACAAGGTTACTGATTGCAAACTTCCTCTCCCTTTGGTTATGA
Protein sequence

>Msa0116090

MAEEENNHTVTYTVKIKVTLTVPDPDESIPDHDRRETQPTANVGAETVPLKGDDVAQAIGVRAETALLNNDEGDDVVEAAEESIPDREKQDMDVGAKTVVLLSTDDEGSVEADDMAAKDSDENNAEQECEEKKVIKEKKRAGRKRKKTVYSSEEGEEKNWEGADVEEGGFSSGCVRKRQRPRKIKSLKEDYVSDLEEDMKKKWKRGRKKKVIIEVSDENDEAEQEEEDVKTEQKKPGRKRKVGYGSEENDEDEQEGENGKNFKIVENELISEKNLESDVLSDDNKGYSLRTDRKVKVKSIEQPKQKINKRNPKWIEEESLMCHQCQRNDKGRVVRCTKCKRKRFCIPCLNNWYPHLKEEEVAEACPVCCGNCNCKACLRSCALIKEIKMKTETNNNHEFELSKYMLKELLPYLRRLDEEQMVEKEIEAKRKGLSHSKLKVKAADYPKNKRVYCDNCKTSIFDYHRSCTKCSFNICLLCCCELRCGKLLGGTDPIEFEFIFQGRDYLHGGKEERPEICEWSRFGWHADSDGSIPCPKADDDCGHGFLELRSILPPNCISELVCKAKELEETIRLQDAEETFDSMCSCLKPVRNATDIHNNTRKAASREDSSDNFLYSPRALNLRHEDLRHFQWHWSKGEPVIISNVLECTTGLSWEPLVMWRAFRQIRNTKHKTLLDVEAIDCLDWCEENINVHQFFTGYTNGRPDWLNWPQVLKLKDWPPSNLFRESLPRHCAEFISSLPYKEYTDPFKGILNLAVKLPENVLKPDMGPKTYIAYGFAQELGRGDSVTKLHCNMSDAVNVLTHIAEVKLKSEGIAAIKKLTQKHLEQDKRELHGDNRDGETNVDMFDNSSSSINASDEQNSVRVLENRGDSLDGALWDIFRREDVPELEEYLKKHFREFRHAHCSPLKQSPLLVGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVGLDFVSPENVGECFRLTEEFRKLPINHRSTKDRLEVKKMTIYAMLDVVNKLEKTRLLIANFLSLWL*