AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0089630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089630 MtrunA17_Chr1g0208301 95.491 377 14 1 1 377 1 374 0.0 617
Msa0089630 MtrunA17_Chr2g0287751 70.130 77 20 1 1 77 1 74 5.90e-28 114
Msa0089630 MtrunA17_Chr4g0032861 83.051 59 10 0 269 327 2 60 1.92e-27 104
Msa0089630 MtrunA17_Chr0c22g0493881 67.949 78 22 1 1 78 1 75 4.23e-27 110
Msa0089630 MtrunA17_Chr4g0065651 67.949 78 22 1 1 78 1 75 5.99e-27 112
Msa0089630 MtrunA17_Chr1g0191671 44.848 165 60 6 1 143 1 156 3.24e-26 110
Msa0089630 MtrunA17_Chr4g0065621 67.949 78 22 1 1 78 1 75 5.67e-26 107
Msa0089630 MtrunA17_Chr7g0269081 66.197 71 24 0 7 77 16 86 1.26e-24 102
Msa0089630 MtrunA17_Chr3g0111541 42.105 114 60 1 10 123 9 116 3.67e-20 87.8
Msa0089630 MtrunA17_Chr7g0272571 59.091 66 27 0 12 77 32 97 9.25e-20 89.7
Msa0089630 MtrunA17_Chr4g0067291 50.000 92 36 1 10 91 71 162 1.77e-19 88.6
Msa0089630 MtrunA17_Chr2g0287741 62.687 67 25 0 15 81 17 83 1.33e-18 87.4
Msa0089630 MtrunA17_Chr2g0296001 60.000 70 28 0 10 79 70 139 1.99e-17 82.8
Msa0089630 MtrunA17_Chr1g0192131 52.055 73 34 1 10 81 12 84 7.21e-17 81.6
Msa0089630 MtrunA17_Chr3g0124411 50.746 67 33 0 11 77 28 94 1.77e-13 67.4
Msa0089630 MtrunA17_Chr8g0382721 51.562 64 31 0 14 77 30 93 1.68e-12 64.7
Msa0089630 MtrunA17_Chr1g0160201 43.939 66 37 0 12 77 24 89 2.14e-12 64.3
Msa0089630 MtrunA17_Chr5g0414621 47.619 84 36 2 94 169 629 712 2.48e-12 68.6
Msa0089630 MtrunA17_Chr3g0094841 37.634 93 55 2 12 103 115 205 1.00e-11 64.3
Msa0089630 MtrunA17_Chr5g0407821 39.394 66 40 0 12 77 22 87 2.42e-11 61.2
Msa0089630 MtrunA17_Chr7g0218981 39.437 71 43 0 13 83 4 74 3.42e-11 60.5
Msa0089630 MtrunA17_Chr1g0189221 39.706 68 41 0 10 77 50 117 4.12e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089630 AT1G23000.1 41.873 363 137 11 1 339 1 313 7.12e-50 171
Msa0089630 AT1G23000.2 42.778 360 138 11 1 339 61 373 1.65e-49 172
Msa0089630 AT3G06130.2 68.817 93 25 2 1 92 1 90 1.33e-33 128
Msa0089630 AT3G06130.1 68.817 93 25 2 1 92 1 90 5.14e-33 129
Msa0089630 AT5G19090.2 67.778 90 23 2 1 87 1 87 2.27e-31 124
Msa0089630 AT5G19090.3 67.778 90 23 2 1 87 1 87 2.27e-31 124
Msa0089630 AT5G19090.5 67.778 90 23 2 1 87 1 87 4.70e-31 124
Msa0089630 AT5G19090.4 67.778 90 23 2 1 87 1 87 4.70e-31 124
Msa0089630 AT5G19090.1 67.778 90 23 2 1 87 1 87 4.70e-31 124
Msa0089630 AT3G05220.1 65.672 67 23 0 9 75 6 72 9.36e-24 103
Msa0089630 AT5G27690.1 50.602 83 40 1 5 86 21 103 1.48e-21 95.1
Msa0089630 AT1G56210.1 57.143 63 27 0 13 75 40 102 2.93e-17 82.8
Msa0089630 AT5G37860.1 29.960 247 140 9 12 253 9 227 4.35e-16 77.8
Msa0089630 AT3G56891.1 42.623 61 35 0 17 77 20 80 4.19e-12 64.3
Msa0089630 AT1G06330.1 42.424 66 38 0 12 77 1 66 4.43e-12 63.9
Msa0089630 AT3G56891.2 43.636 55 31 0 23 77 3 57 3.11e-11 61.2
Msa0089630 AT1G71050.1 40.909 66 39 0 12 77 27 92 9.05e-11 60.1

Find 98 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATACTAACTTAGAAAA+TGG 0.132364 1_2:+71236037 None:intergenic
TTCATAACCATGTTCTGATT+TGG 0.207548 1_2:+71236676 None:intergenic
CAGCAGAAGGTAACAGTTTC+AGG 0.218037 1_2:-71237096 Msa0089630:CDS
TCATAACCATGTTCTGATTT+GGG 0.272787 1_2:+71236677 None:intergenic
GCTGGTAGTGCTACTGTTCT+AGG 0.303996 1_2:-71236481 Msa0089630:CDS
TTAACATAGATGGTGGATAT+TGG 0.307758 1_2:+71236383 None:intergenic
ACCAATGTCACTCGCCCTTT+TGG 0.321785 1_2:+71236549 None:intergenic
GGTGGAAATTCCAATGGTTT+AGG 0.330691 1_2:-71236460 Msa0089630:CDS
TTCATGTTCATTAACATAGA+TGG 0.342463 1_2:+71236373 None:intergenic
TTGTAATAATAGCCGGTATT+AGG 0.353066 1_2:+71236250 None:intergenic
CTTTAGCATCTGAAAATGAT+TGG 0.354821 1_2:+71236786 None:intergenic
GAGAGGAGAGAGAGAGGGTT+TGG 0.356491 1_2:+71238348 None:intergenic
ATGAAGAGATGCGGTTCATC+AGG 0.357851 1_2:-71236816 Msa0089630:CDS
GAAGTTGAACAATGCTCAAT+TGG 0.375959 1_2:-71236611 Msa0089630:CDS
ATAGTAGTTTGACTGCAATT+TGG 0.386213 1_2:-71236020 Msa0089630:three_prime_UTR
TTTGCATAGGAGTAATTTGC+AGG 0.391852 1_2:+71236211 None:intergenic
TGGTGGGACAGGTTTGTGTT+AGG 0.406147 1_2:-71236000 Msa0089630:three_prime_UTR
TGATGAGGAAGAGGAGGAGG+AGG 0.411229 1_2:-71236839 Msa0089630:CDS
AAACTCCTTCAGAGAATTGA+AGG 0.417205 1_2:-71237645 Msa0089630:intron
GTTATGAAGGAAGGTGCTAA+TGG 0.420368 1_2:-71236661 Msa0089630:CDS
ACAGGTTTGTGTTAGGATGT+TGG 0.428194 1_2:-71235993 Msa0089630:three_prime_UTR
CCAGTAACAAAACCACCATT+TGG 0.437509 1_2:+71236406 None:intergenic
ATATGATGAGGAAGAGGAGG+AGG 0.443899 1_2:-71236842 Msa0089630:CDS
ATCAAGAAACTAGTAAGATC+TGG 0.446205 1_2:-71237051 Msa0089630:CDS
GAGAGAGAGAGGAGAGAGAG+AGG 0.450668 1_2:+71238342 None:intergenic
ATAATATTCATCATCCTCTT+CGG 0.450964 1_2:+71236867 None:intergenic
ACTATACTAACTTAGAAAAT+GGG 0.452023 1_2:+71236038 None:intergenic
TGACTGCAATTTGGTGGGAC+AGG 0.459500 1_2:-71236011 Msa0089630:three_prime_UTR
CTTTAAGCTCCTTAAAATCC+AGG 0.466184 1_2:-71237899 Msa0089630:intron
CAATGCTCAATTGGCTCAGT+TGG 0.471941 1_2:-71236602 Msa0089630:CDS
TAACTTAGAAAATGGGACTT+AGG 0.477877 1_2:+71236045 None:intergenic
AATGCTGGCAATGGAAATAG+TGG 0.481459 1_2:-71236712 Msa0089630:CDS
AGAGTGCAAGGGAAGTGAAA+AGG 0.485974 1_2:+71238241 None:intergenic
AATGGAAATAGTGGCAAGAA+AGG 0.499764 1_2:-71236703 Msa0089630:CDS
TCTATGTTAATGAACATGAA+TGG 0.505347 1_2:-71236370 Msa0089630:CDS
TTATGAAGGAAGGTGCTAAT+GGG 0.505662 1_2:-71236660 Msa0089630:CDS
AAATCAGAACATGGTTATGA+AGG 0.507037 1_2:-71236674 Msa0089630:CDS
TTACATTATTGAACAGCTGC+TGG 0.507630 1_2:+71236129 None:intergenic
GTGAGAGAAGGGAAGAGTAA+TGG 0.507818 1_2:+71238292 None:intergenic
TCAACCTTGGAGAATCCAAA+AGG 0.510252 1_2:-71236564 Msa0089630:CDS
TCCACTGCATCTATTCCAAA+TGG 0.510572 1_2:-71236421 Msa0089630:CDS
ATTATAATTGTAATAATAGC+CGG 0.512654 1_2:+71236243 None:intergenic
TCCAAAAGGGCGAGTGACAT+TGG 0.516238 1_2:-71236550 Msa0089630:CDS
GTTCTGCATCTATTTGAACT+TGG 0.517770 1_2:+71237118 None:intergenic
GGGAACAATAACAATGGTGC+TGG 0.520248 1_2:-71236499 Msa0089630:CDS
GATGCAAACAATGTGAAGAA+AGG 0.525694 1_2:-71236754 Msa0089630:CDS
TTAAAAGGAGAAAGAGTGCA+AGG 0.528470 1_2:+71238229 None:intergenic
CCGGTATTAGGAGGAACAAA+AGG 0.531347 1_2:+71236262 None:intergenic
GGTGCTATGATGAATTTAGC+TGG 0.532345 1_2:-71236529 Msa0089630:CDS
GGAAATTCCAATGGTTTAGG+AGG 0.533330 1_2:-71236457 Msa0089630:CDS
GCTCAATTGGCTCAGTTGGT+TGG 0.533914 1_2:-71236598 Msa0089630:CDS
AGTGACCTTCAATTCTCTGA+AGG 0.534789 1_2:+71237640 None:intergenic
TGAATATGATGAGGAAGAGG+AGG 0.535580 1_2:-71236845 Msa0089630:CDS
AAGATGAACAATGCTGGCAA+TGG 0.540672 1_2:-71236721 Msa0089630:CDS
GTTCTAGGTGGAAATTCCAA+TGG 0.542544 1_2:-71236466 Msa0089630:CDS
CATTGATGAACATGCAGGCA+AGG 0.543733 1_2:-71236327 Msa0089630:CDS
TTATGAATATGATGAGGAAG+AGG 0.546136 1_2:-71236848 Msa0089630:CDS
TAAAAGGAGAAAGAGTGCAA+GGG 0.551768 1_2:+71238230 None:intergenic
AGCCTCAGATGATGTATCAC+AGG 0.555215 1_2:-71236288 Msa0089630:CDS
CAGAACATGGTTATGAAGGA+AGG 0.555580 1_2:-71236670 Msa0089630:CDS
ATCTTCATTGATGAACATGC+AGG 0.556065 1_2:-71236332 Msa0089630:CDS
TGCATGTTCATCAATGAAGA+TGG 0.558115 1_2:+71236334 None:intergenic
TAGTTTGACTGCAATTTGGT+GGG 0.560660 1_2:-71236016 Msa0089630:three_prime_UTR
TCCTCTTCGGAACTAAAAGC+CGG 0.563236 1_2:+71236880 None:intergenic
AGAGAGAGAGGAGAGAGAGA+GGG 0.566086 1_2:+71238343 None:intergenic
TGCAAATGCTTGTTATCCAA+CGG 0.566769 1_2:-71236194 Msa0089630:CDS
ATAGCTAAGATGAACAATGC+TGG 0.570218 1_2:-71236727 Msa0089630:CDS
GTAGTTTGACTGCAATTTGG+TGG 0.570341 1_2:-71236017 Msa0089630:three_prime_UTR
ATGTTCATTAACATAGATGG+TGG 0.570507 1_2:+71236376 None:intergenic
AGGAAAACCTCCTAAACCAT+TGG 0.574088 1_2:+71236450 None:intergenic
GTGTAGTAGTTGAGATGATG+TGG 0.580946 1_2:-71235922 Msa0089630:three_prime_UTR
AATAGATGCAGAACAGCAGA+AGG 0.582210 1_2:-71237109 Msa0089630:CDS
GGTAACAGTTTCAGGTAGTG+TGG 0.582801 1_2:-71237088 Msa0089630:CDS
CAACCTTGGAGAATCCAAAA+GGG 0.584061 1_2:-71236563 Msa0089630:CDS
ATAGATGCAGTGGATCCTGC+AGG 0.590027 1_2:+71236430 None:intergenic
TAATAATAGCCGGTATTAGG+AGG 0.594611 1_2:+71236253 None:intergenic
CTGGAAAATATGCTGAGCCC+TGG 0.596330 1_2:-71237032 Msa0089630:CDS
ACCATTTGGAATAGATGCAG+TGG 0.604596 1_2:+71236420 None:intergenic
TGGATAACAAGCATTTGCAT+AGG 0.605903 1_2:+71236198 None:intergenic
GCAAACAAAACAAAGGCACA+TGG 0.606102 1_2:+71238183 None:intergenic
ACTGCATCTATTCCAAATGG+TGG 0.607866 1_2:-71236418 Msa0089630:CDS
TGAAGAGATGCGGTTCATCA+GGG 0.610395 1_2:-71236815 Msa0089630:CDS
CTGCTGCTATTACTAGCTAG+TGG 0.612378 1_2:+71238095 None:intergenic
GGTAATGAAAGTCTCAACCT+TGG 0.624155 1_2:-71236577 Msa0089630:CDS
TTTAATGGGAACAATAACAA+TGG 0.630005 1_2:-71236505 Msa0089630:CDS
AAAGTGAACATTCACTGTGA+TGG 0.643761 1_2:-71237687 Msa0089630:CDS
CTCGAAAGCAAACAAAACAA+AGG 0.646036 1_2:+71238176 None:intergenic
GTCAAAGATGACAAGAACAA+AGG 0.646314 1_2:-71236958 Msa0089630:CDS
AGGAAACCCAAATCAGAACA+TGG 0.652284 1_2:-71236683 Msa0089630:CDS
TGGGATTGAGCAGAAAACAA+TGG 0.655937 1_2:-71236641 Msa0089630:CDS
TGTTCATCAATGAAGATGGA+TGG 0.664920 1_2:+71236338 None:intergenic
AGGAGGAGGATGAAGAGATG+CGG 0.665296 1_2:-71236825 Msa0089630:CDS
GCTGCAGAGTGATCATCCGT+TGG 0.673460 1_2:+71236178 None:intergenic
CAAACAAAACAAAGGCACAT+GGG 0.674537 1_2:+71238184 None:intergenic
GACCTGTGATACATCATCTG+AGG 0.691567 1_2:+71236286 None:intergenic
TGTAGTAGTTGAGATGATGT+GGG 0.709018 1_2:-71235921 Msa0089630:three_prime_UTR
GGTAGTGCTACTGTTCTAGG+TGG 0.717323 1_2:-71236478 Msa0089630:CDS
TGAATATTATGAATATGATG+AGG 0.721112 1_2:-71236854 Msa0089630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTTTTTAATTTTTTT+TGG - chr1_2:71237077-71237096 Msa0089630:CDS 0.0%
!!! AAATTTTTTTTAATTTTTTT+TGG - chr1_2:71237077-71237096 Msa0089630:CDS 0.0%
!!! GCATAAAAATAAATTTTAAA+AGG + chr1_2:71236055-71236074 None:intergenic 10.0%
!!! GCATAAAAATAAATTTTAAA+AGG + chr1_2:71236055-71236074 None:intergenic 10.0%
!! TTTATGGATAATGTTAATAA+GGG + chr1_2:71236405-71236424 None:intergenic 15.0%
!!! TTTTATGGATAATGTTAATA+AGG + chr1_2:71236406-71236425 None:intergenic 15.0%
!! ACTAAACTAAAATAATAGAA+GGG + chr1_2:71236475-71236494 None:intergenic 15.0%
!! AACTAAACTAAAATAATAGA+AGG + chr1_2:71236476-71236495 None:intergenic 15.0%
!! TAAAAAAAAGACCAAATATT+AGG + chr1_2:71236500-71236519 None:intergenic 15.0%
!! ATTATAATTGTAATAATAGC+CGG + chr1_2:71238026-71238045 None:intergenic 15.0%
!! TTTATGGATAATGTTAATAA+GGG + chr1_2:71236405-71236424 None:intergenic 15.0%
!!! TTTTATGGATAATGTTAATA+AGG + chr1_2:71236406-71236425 None:intergenic 15.0%
!! ACTAAACTAAAATAATAGAA+GGG + chr1_2:71236475-71236494 None:intergenic 15.0%
!! AACTAAACTAAAATAATAGA+AGG + chr1_2:71236476-71236495 None:intergenic 15.0%
!! TAAAAAAAAGACCAAATATT+AGG + chr1_2:71236500-71236519 None:intergenic 15.0%
!! ATTATAATTGTAATAATAGC+CGG + chr1_2:71238026-71238045 None:intergenic 15.0%
!! TTATGGATAATGTTAATAAG+GGG + chr1_2:71236404-71236423 None:intergenic 20.0%
!!! TAGTTTAGTTTCCTAATATT+TGG - chr1_2:71236486-71236505 Msa0089630:CDS 20.0%
!!! ATTTTAACTTCAAGAAAACA+AGG + chr1_2:71236719-71236738 None:intergenic 20.0%
!! TTTCTTGAAGTTAAAATGTA+CGG - chr1_2:71236722-71236741 Msa0089630:CDS 20.0%
!! TGAATATTATGAATATGATG+AGG - chr1_2:71237412-71237431 Msa0089630:intron 20.0%
!! ACTATACTAACTTAGAAAAT+GGG + chr1_2:71238231-71238250 None:intergenic 20.0%
!! TACTATACTAACTTAGAAAA+TGG + chr1_2:71238232-71238251 None:intergenic 20.0%
!! TTATGGATAATGTTAATAAG+GGG + chr1_2:71236404-71236423 None:intergenic 20.0%
!!! TAGTTTAGTTTCCTAATATT+TGG - chr1_2:71236486-71236505 Msa0089630:CDS 20.0%
!!! ATTTTAACTTCAAGAAAACA+AGG + chr1_2:71236719-71236738 None:intergenic 20.0%
!! TTTCTTGAAGTTAAAATGTA+CGG - chr1_2:71236722-71236741 Msa0089630:CDS 20.0%
!! TGAATATTATGAATATGATG+AGG - chr1_2:71237412-71237431 Msa0089630:intron 20.0%
!! ACTATACTAACTTAGAAAAT+GGG + chr1_2:71238231-71238250 None:intergenic 20.0%
!! TACTATACTAACTTAGAAAA+TGG + chr1_2:71238232-71238251 None:intergenic 20.0%
! GCAAATGGTAAAACTAAAAA+AGG + chr1_2:71236277-71236296 None:intergenic 25.0%
!!! AGCATGTTGTTTTAGTTTTA+TGG + chr1_2:71236421-71236440 None:intergenic 25.0%
! TAAAATAATAGAAGGGAGAA+GGG + chr1_2:71236468-71236487 None:intergenic 25.0%
!! TTTAGTTTACTCACAATGAT+GGG - chr1_2:71236819-71236838 Msa0089630:CDS 25.0%
! TTAAAGGGAGACATAAAAAA+TGG - chr1_2:71236865-71236884 Msa0089630:CDS 25.0%
! ACTATATGGATATGGTTAAT+TGG - chr1_2:71237050-71237069 Msa0089630:CDS 25.0%
! TAAACACCTATAGAACAAAA+GGG + chr1_2:71237128-71237147 None:intergenic 25.0%
! ATAATATTCATCATCCTCTT+CGG + chr1_2:71237402-71237421 None:intergenic 25.0%
!!! ATGAATTTAGCTGGTTTTAA+TGG - chr1_2:71237746-71237765 Msa0089630:intron 25.0%
!!! TGAATTTAGCTGGTTTTAAT+GGG - chr1_2:71237747-71237766 Msa0089630:intron 25.0%
! TTTAATGGGAACAATAACAA+TGG - chr1_2:71237761-71237780 Msa0089630:intron 25.0%
! TTCATGTTCATTAACATAGA+TGG + chr1_2:71237896-71237915 None:intergenic 25.0%
! TCTATGTTAATGAACATGAA+TGG - chr1_2:71237896-71237915 Msa0089630:intron 25.0%
! TTGTAGAGTTAAAAAAGTGA+AGG - chr1_2:71238169-71238188 Msa0089630:five_prime_UTR 25.0%
! GCAAATGGTAAAACTAAAAA+AGG + chr1_2:71236277-71236296 None:intergenic 25.0%
!!! AGCATGTTGTTTTAGTTTTA+TGG + chr1_2:71236421-71236440 None:intergenic 25.0%
! TAAAATAATAGAAGGGAGAA+GGG + chr1_2:71236468-71236487 None:intergenic 25.0%
!! TTTAGTTTACTCACAATGAT+GGG - chr1_2:71236819-71236838 Msa0089630:CDS 25.0%
! TTAAAGGGAGACATAAAAAA+TGG - chr1_2:71236865-71236884 Msa0089630:CDS 25.0%
! ACTATATGGATATGGTTAAT+TGG - chr1_2:71237050-71237069 Msa0089630:CDS 25.0%
! TAAACACCTATAGAACAAAA+GGG + chr1_2:71237128-71237147 None:intergenic 25.0%
! ATAATATTCATCATCCTCTT+CGG + chr1_2:71237402-71237421 None:intergenic 25.0%
!!! ATGAATTTAGCTGGTTTTAA+TGG - chr1_2:71237746-71237765 Msa0089630:intron 25.0%
!!! TGAATTTAGCTGGTTTTAAT+GGG - chr1_2:71237747-71237766 Msa0089630:intron 25.0%
! TTTAATGGGAACAATAACAA+TGG - chr1_2:71237761-71237780 Msa0089630:intron 25.0%
! TTCATGTTCATTAACATAGA+TGG + chr1_2:71237896-71237915 None:intergenic 25.0%
! TCTATGTTAATGAACATGAA+TGG - chr1_2:71237896-71237915 Msa0089630:intron 25.0%
! TTGTAGAGTTAAAAAAGTGA+AGG - chr1_2:71238169-71238188 Msa0089630:five_prime_UTR 25.0%
TAAAAAATGCAGTGAGAGAA+GGG + chr1_2:71235988-71236007 None:intergenic 30.0%
ATAAAAAATGCAGTGAGAGA+AGG + chr1_2:71235989-71236008 None:intergenic 30.0%
!!! TCTCTCACTGCATTTTTTAT+TGG - chr1_2:71235989-71236008 Msa0089630:three_prime_UTR 30.0%
TGTTTGCAAGGAAAAGAATA+AGG + chr1_2:71236313-71236332 None:intergenic 30.0%
!!! CAAGTTTTTTTCTGTTTGCA+AGG + chr1_2:71236325-71236344 None:intergenic 30.0%
AAAATAATAGAAGGGAGAAG+GGG + chr1_2:71236467-71236486 None:intergenic 30.0%
CTAAAATAATAGAAGGGAGA+AGG + chr1_2:71236469-71236488 None:intergenic 30.0%
! GTTTAGTTTACTCACAATGA+TGG - chr1_2:71236818-71236837 Msa0089630:CDS 30.0%
TTAGTTTACTCACAATGATG+GGG - chr1_2:71236820-71236839 Msa0089630:CDS 30.0%
TAACTCCCATGACTTATAAA+AGG + chr1_2:71236848-71236867 None:intergenic 30.0%
TTATAAGTCATGGGAGTTAA+AGG - chr1_2:71236849-71236868 Msa0089630:CDS 30.0%
TATAAGTCATGGGAGTTAAA+GGG - chr1_2:71236850-71236869 Msa0089630:CDS 30.0%
!!! GCTACTTTTTAAATCTTCAG+TGG - chr1_2:71236930-71236949 Msa0089630:CDS 30.0%
ATACCTTAGTGTACACTATA+TGG - chr1_2:71237036-71237055 Msa0089630:CDS 30.0%
TATCCATATAGTGTACACTA+AGG + chr1_2:71237042-71237061 None:intergenic 30.0%
TAGTGTACACTATATGGATA+TGG - chr1_2:71237042-71237061 Msa0089630:CDS 30.0%
!!! TTAATTTTTTTTGGCGTGCT+TGG - chr1_2:71237086-71237105 Msa0089630:CDS 30.0%
! TTTTGACCCTTTTGTTCTAT+AGG - chr1_2:71237119-71237138 Msa0089630:CDS 30.0%
GTAAACACCTATAGAACAAA+AGG + chr1_2:71237129-71237148 None:intergenic 30.0%
ATCAAGAAACTAGTAAGATC+TGG - chr1_2:71237215-71237234 Msa0089630:intron 30.0%
!! CTTTTGATTCTGATTGTTGT+TGG + chr1_2:71237270-71237289 None:intergenic 30.0%
AAGAACAAAGGACAAAAACA+AGG - chr1_2:71237320-71237339 Msa0089630:intron 30.0%
CAAAAATCAGCAGAAATTTC+CGG - chr1_2:71237367-71237386 Msa0089630:intron 30.0%
TTATGAATATGATGAGGAAG+AGG - chr1_2:71237418-71237437 Msa0089630:intron 30.0%
CTTTAGCATCTGAAAATGAT+TGG + chr1_2:71237483-71237502 None:intergenic 30.0%
TCATAACCATGTTCTGATTT+GGG + chr1_2:71237592-71237611 None:intergenic 30.0%
TTCATAACCATGTTCTGATT+TGG + chr1_2:71237593-71237612 None:intergenic 30.0%
AAATCAGAACATGGTTATGA+AGG - chr1_2:71237592-71237611 Msa0089630:intron 30.0%
!! TTAACATAGATGGTGGATAT+TGG + chr1_2:71237886-71237905 None:intergenic 30.0%
ATGTTCATTAACATAGATGG+TGG + chr1_2:71237893-71237912 None:intergenic 30.0%
TTGTAATAATAGCCGGTATT+AGG + chr1_2:71238019-71238038 None:intergenic 30.0%
GAAGGAAAAAAGATGCAAAA+TGG - chr1_2:71238187-71238206 Msa0089630:five_prime_UTR 30.0%
TAACTTAGAAAATGGGACTT+AGG + chr1_2:71238224-71238243 None:intergenic 30.0%
ATAGTAGTTTGACTGCAATT+TGG - chr1_2:71238246-71238265 Msa0089630:five_prime_UTR 30.0%
TAAAAAATGCAGTGAGAGAA+GGG + chr1_2:71235988-71236007 None:intergenic 30.0%
ATAAAAAATGCAGTGAGAGA+AGG + chr1_2:71235989-71236008 None:intergenic 30.0%
!!! TCTCTCACTGCATTTTTTAT+TGG - chr1_2:71235989-71236008 Msa0089630:three_prime_UTR 30.0%
TGTTTGCAAGGAAAAGAATA+AGG + chr1_2:71236313-71236332 None:intergenic 30.0%
!!! CAAGTTTTTTTCTGTTTGCA+AGG + chr1_2:71236325-71236344 None:intergenic 30.0%
AAAATAATAGAAGGGAGAAG+GGG + chr1_2:71236467-71236486 None:intergenic 30.0%
CTAAAATAATAGAAGGGAGA+AGG + chr1_2:71236469-71236488 None:intergenic 30.0%
! GTTTAGTTTACTCACAATGA+TGG - chr1_2:71236818-71236837 Msa0089630:CDS 30.0%
TTAGTTTACTCACAATGATG+GGG - chr1_2:71236820-71236839 Msa0089630:CDS 30.0%
TAACTCCCATGACTTATAAA+AGG + chr1_2:71236848-71236867 None:intergenic 30.0%
TTATAAGTCATGGGAGTTAA+AGG - chr1_2:71236849-71236868 Msa0089630:CDS 30.0%
TATAAGTCATGGGAGTTAAA+GGG - chr1_2:71236850-71236869 Msa0089630:CDS 30.0%
!!! GCTACTTTTTAAATCTTCAG+TGG - chr1_2:71236930-71236949 Msa0089630:CDS 30.0%
ATACCTTAGTGTACACTATA+TGG - chr1_2:71237036-71237055 Msa0089630:CDS 30.0%
TATCCATATAGTGTACACTA+AGG + chr1_2:71237042-71237061 None:intergenic 30.0%
TAGTGTACACTATATGGATA+TGG - chr1_2:71237042-71237061 Msa0089630:CDS 30.0%
!!! TTAATTTTTTTTGGCGTGCT+TGG - chr1_2:71237086-71237105 Msa0089630:CDS 30.0%
! TTTTGACCCTTTTGTTCTAT+AGG - chr1_2:71237119-71237138 Msa0089630:CDS 30.0%
GTAAACACCTATAGAACAAA+AGG + chr1_2:71237129-71237148 None:intergenic 30.0%
ATCAAGAAACTAGTAAGATC+TGG - chr1_2:71237215-71237234 Msa0089630:intron 30.0%
!! CTTTTGATTCTGATTGTTGT+TGG + chr1_2:71237270-71237289 None:intergenic 30.0%
AAGAACAAAGGACAAAAACA+AGG - chr1_2:71237320-71237339 Msa0089630:intron 30.0%
CAAAAATCAGCAGAAATTTC+CGG - chr1_2:71237367-71237386 Msa0089630:intron 30.0%
TTATGAATATGATGAGGAAG+AGG - chr1_2:71237418-71237437 Msa0089630:intron 30.0%
CTTTAGCATCTGAAAATGAT+TGG + chr1_2:71237483-71237502 None:intergenic 30.0%
TCATAACCATGTTCTGATTT+GGG + chr1_2:71237592-71237611 None:intergenic 30.0%
TTCATAACCATGTTCTGATT+TGG + chr1_2:71237593-71237612 None:intergenic 30.0%
AAATCAGAACATGGTTATGA+AGG - chr1_2:71237592-71237611 Msa0089630:intron 30.0%
!! TTAACATAGATGGTGGATAT+TGG + chr1_2:71237886-71237905 None:intergenic 30.0%
ATGTTCATTAACATAGATGG+TGG + chr1_2:71237893-71237912 None:intergenic 30.0%
TTGTAATAATAGCCGGTATT+AGG + chr1_2:71238019-71238038 None:intergenic 30.0%
GAAGGAAAAAAGATGCAAAA+TGG - chr1_2:71238187-71238206 Msa0089630:five_prime_UTR 30.0%
TAACTTAGAAAATGGGACTT+AGG + chr1_2:71238224-71238243 None:intergenic 30.0%
ATAGTAGTTTGACTGCAATT+TGG - chr1_2:71238246-71238265 Msa0089630:five_prime_UTR 30.0%
! ATTTTGAATGTGAGAGAGAG+AGG + chr1_2:71235938-71235957 None:intergenic 35.0%
! TAAAAGGAGAAAGAGTGCAA+GGG + chr1_2:71236039-71236058 None:intergenic 35.0%
! TTAAAAGGAGAAAGAGTGCA+AGG + chr1_2:71236040-71236059 None:intergenic 35.0%
! CAAACAAAACAAAGGCACAT+GGG + chr1_2:71236085-71236104 None:intergenic 35.0%
CTCGAAAGCAAACAAAACAA+AGG + chr1_2:71236093-71236112 None:intergenic 35.0%
TGCAAGGAAAAGAATAAGGT+AGG + chr1_2:71236309-71236328 None:intergenic 35.0%
CTTTAAGCTCCTTAAAATCC+AGG - chr1_2:71236367-71236386 Msa0089630:CDS 35.0%
!!! AAAGAGGTACCTGGATTTTA+AGG + chr1_2:71236379-71236398 None:intergenic 35.0%
ATGTTAATAAGGGGAGAAAG+AGG + chr1_2:71236395-71236414 None:intergenic 35.0%
AAATAATAGAAGGGAGAAGG+GGG + chr1_2:71236466-71236485 None:intergenic 35.0%
AAAGTGAACATTCACTGTGA+TGG - chr1_2:71236579-71236598 Msa0089630:CDS 35.0%
AAACTCCTTCAGAGAATTGA+AGG - chr1_2:71236621-71236640 Msa0089630:CDS 35.0%
! GGGTTCCTTTTATAAGTCAT+GGG - chr1_2:71236840-71236859 Msa0089630:CDS 35.0%
AAATCTTCAGTGGAAAGCTT+AGG - chr1_2:71236940-71236959 Msa0089630:CDS 35.0%
TGGAAAGCTTAGGCTATAAA+AGG - chr1_2:71236950-71236969 Msa0089630:CDS 35.0%
GTTCTGCATCTATTTGAACT+TGG + chr1_2:71237151-71237170 None:intergenic 35.0%
GTCAAAGATGACAAGAACAA+AGG - chr1_2:71237308-71237327 Msa0089630:intron 35.0%
!! AAAAACAAGGACTGGTCAAA+GGG - chr1_2:71237333-71237352 Msa0089630:intron 35.0%
GATGCAAACAATGTGAAGAA+AGG - chr1_2:71237512-71237531 Msa0089630:intron 35.0%
ATAGCTAAGATGAACAATGC+TGG - chr1_2:71237539-71237558 Msa0089630:intron 35.0%
AATGGAAATAGTGGCAAGAA+AGG - chr1_2:71237563-71237582 Msa0089630:intron 35.0%
!! TTATGAAGGAAGGTGCTAAT+GGG - chr1_2:71237606-71237625 Msa0089630:intron 35.0%
GAAGTTGAACAATGCTCAAT+TGG - chr1_2:71237655-71237674 Msa0089630:CDS 35.0%
TGTTCATCAATGAAGATGGA+TGG + chr1_2:71237931-71237950 None:intergenic 35.0%
TGCATGTTCATCAATGAAGA+TGG + chr1_2:71237935-71237954 None:intergenic 35.0%
ATCTTCATTGATGAACATGC+AGG - chr1_2:71237934-71237953 Msa0089630:exon 35.0%
TAATAATAGCCGGTATTAGG+AGG + chr1_2:71238016-71238035 None:intergenic 35.0%
! TTTGCATAGGAGTAATTTGC+AGG + chr1_2:71238058-71238077 None:intergenic 35.0%
TGGATAACAAGCATTTGCAT+AGG + chr1_2:71238071-71238090 None:intergenic 35.0%
!! TGCAAATGCTTGTTATCCAA+CGG - chr1_2:71238072-71238091 Msa0089630:intron 35.0%
TTACATTATTGAACAGCTGC+TGG + chr1_2:71238140-71238159 None:intergenic 35.0%
TAGTTTGACTGCAATTTGGT+GGG - chr1_2:71238250-71238269 Msa0089630:five_prime_UTR 35.0%
TGTAGTAGTTGAGATGATGT+GGG - chr1_2:71238345-71238364 Msa0089630:five_prime_UTR 35.0%
! ATTTTGAATGTGAGAGAGAG+AGG + chr1_2:71235938-71235957 None:intergenic 35.0%
! TAAAAGGAGAAAGAGTGCAA+GGG + chr1_2:71236039-71236058 None:intergenic 35.0%
! TTAAAAGGAGAAAGAGTGCA+AGG + chr1_2:71236040-71236059 None:intergenic 35.0%
! CAAACAAAACAAAGGCACAT+GGG + chr1_2:71236085-71236104 None:intergenic 35.0%
CTCGAAAGCAAACAAAACAA+AGG + chr1_2:71236093-71236112 None:intergenic 35.0%
TGCAAGGAAAAGAATAAGGT+AGG + chr1_2:71236309-71236328 None:intergenic 35.0%
CTTTAAGCTCCTTAAAATCC+AGG - chr1_2:71236367-71236386 Msa0089630:CDS 35.0%
!!! AAAGAGGTACCTGGATTTTA+AGG + chr1_2:71236379-71236398 None:intergenic 35.0%
ATGTTAATAAGGGGAGAAAG+AGG + chr1_2:71236395-71236414 None:intergenic 35.0%
AAATAATAGAAGGGAGAAGG+GGG + chr1_2:71236466-71236485 None:intergenic 35.0%
AAAGTGAACATTCACTGTGA+TGG - chr1_2:71236579-71236598 Msa0089630:CDS 35.0%
AAACTCCTTCAGAGAATTGA+AGG - chr1_2:71236621-71236640 Msa0089630:CDS 35.0%
! GGGTTCCTTTTATAAGTCAT+GGG - chr1_2:71236840-71236859 Msa0089630:CDS 35.0%
AAATCTTCAGTGGAAAGCTT+AGG - chr1_2:71236940-71236959 Msa0089630:CDS 35.0%
TGGAAAGCTTAGGCTATAAA+AGG - chr1_2:71236950-71236969 Msa0089630:CDS 35.0%
GTTCTGCATCTATTTGAACT+TGG + chr1_2:71237151-71237170 None:intergenic 35.0%
GTCAAAGATGACAAGAACAA+AGG - chr1_2:71237308-71237327 Msa0089630:intron 35.0%
!! AAAAACAAGGACTGGTCAAA+GGG - chr1_2:71237333-71237352 Msa0089630:intron 35.0%
GATGCAAACAATGTGAAGAA+AGG - chr1_2:71237512-71237531 Msa0089630:intron 35.0%
ATAGCTAAGATGAACAATGC+TGG - chr1_2:71237539-71237558 Msa0089630:intron 35.0%
AATGGAAATAGTGGCAAGAA+AGG - chr1_2:71237563-71237582 Msa0089630:intron 35.0%
!! TTATGAAGGAAGGTGCTAAT+GGG - chr1_2:71237606-71237625 Msa0089630:intron 35.0%
GAAGTTGAACAATGCTCAAT+TGG - chr1_2:71237655-71237674 Msa0089630:CDS 35.0%
TGTTCATCAATGAAGATGGA+TGG + chr1_2:71237931-71237950 None:intergenic 35.0%
TGCATGTTCATCAATGAAGA+TGG + chr1_2:71237935-71237954 None:intergenic 35.0%
ATCTTCATTGATGAACATGC+AGG - chr1_2:71237934-71237953 Msa0089630:exon 35.0%
TAATAATAGCCGGTATTAGG+AGG + chr1_2:71238016-71238035 None:intergenic 35.0%
! TTTGCATAGGAGTAATTTGC+AGG + chr1_2:71238058-71238077 None:intergenic 35.0%
TGGATAACAAGCATTTGCAT+AGG + chr1_2:71238071-71238090 None:intergenic 35.0%
!! TGCAAATGCTTGTTATCCAA+CGG - chr1_2:71238072-71238091 Msa0089630:intron 35.0%
TTACATTATTGAACAGCTGC+TGG + chr1_2:71238140-71238159 None:intergenic 35.0%
TAGTTTGACTGCAATTTGGT+GGG - chr1_2:71238250-71238269 Msa0089630:five_prime_UTR 35.0%
TGTAGTAGTTGAGATGATGT+GGG - chr1_2:71238345-71238364 Msa0089630:five_prime_UTR 35.0%
! GCAAACAAAACAAAGGCACA+TGG + chr1_2:71236086-71236105 None:intergenic 40.0%
GGTAGGTTAAGCTAAGCAAA+TGG + chr1_2:71236292-71236311 None:intergenic 40.0%
AATAATAGAAGGGAGAAGGG+GGG + chr1_2:71236465-71236484 None:intergenic 40.0%
AGTGACCTTCAATTCTCTGA+AGG + chr1_2:71236629-71236648 None:intergenic 40.0%
! GGGGTTCCTTTTATAAGTCA+TGG - chr1_2:71236839-71236858 Msa0089630:CDS 40.0%
AATAGATGCAGAACAGCAGA+AGG - chr1_2:71237157-71237176 Msa0089630:intron 40.0%
!!! TTGTTGGTTTTCTGAGACCA+GGG + chr1_2:71237254-71237273 None:intergenic 40.0%
CAAAGGACAAAAACAAGGAC+TGG - chr1_2:71237325-71237344 Msa0089630:intron 40.0%
!! CAAAAACAAGGACTGGTCAA+AGG - chr1_2:71237332-71237351 Msa0089630:intron 40.0%
TGAATATGATGAGGAAGAGG+AGG - chr1_2:71237421-71237440 Msa0089630:intron 40.0%
AAGATGAACAATGCTGGCAA+TGG - chr1_2:71237545-71237564 Msa0089630:intron 40.0%
AATGCTGGCAATGGAAATAG+TGG - chr1_2:71237554-71237573 Msa0089630:intron 40.0%
AGGAAACCCAAATCAGAACA+TGG - chr1_2:71237583-71237602 Msa0089630:intron 40.0%
CAGAACATGGTTATGAAGGA+AGG - chr1_2:71237596-71237615 Msa0089630:intron 40.0%
!! GTTATGAAGGAAGGTGCTAA+TGG - chr1_2:71237605-71237624 Msa0089630:intron 40.0%
TGGGATTGAGCAGAAAACAA+TGG - chr1_2:71237625-71237644 Msa0089630:intron 40.0%
GGTAATGAAAGTCTCAACCT+TGG - chr1_2:71237689-71237708 Msa0089630:CDS 40.0%
TCAACCTTGGAGAATCCAAA+AGG - chr1_2:71237702-71237721 Msa0089630:CDS 40.0%
CAACCTTGGAGAATCCAAAA+GGG - chr1_2:71237703-71237722 Msa0089630:intron 40.0%
! GGTGCTATGATGAATTTAGC+TGG - chr1_2:71237737-71237756 Msa0089630:intron 40.0%
! GTTCTAGGTGGAAATTCCAA+TGG - chr1_2:71237800-71237819 Msa0089630:intron 40.0%
GGTGGAAATTCCAATGGTTT+AGG - chr1_2:71237806-71237825 Msa0089630:intron 40.0%
GGAAATTCCAATGGTTTAGG+AGG - chr1_2:71237809-71237828 Msa0089630:intron 40.0%
AGGAAAACCTCCTAAACCAT+TGG + chr1_2:71237819-71237838 None:intergenic 40.0%
TCCACTGCATCTATTCCAAA+TGG - chr1_2:71237845-71237864 Msa0089630:intron 40.0%
! ACCATTTGGAATAGATGCAG+TGG + chr1_2:71237849-71237868 None:intergenic 40.0%
ACTGCATCTATTCCAAATGG+TGG - chr1_2:71237848-71237867 Msa0089630:intron 40.0%
CCAGTAACAAAACCACCATT+TGG + chr1_2:71237863-71237882 None:intergenic 40.0%
!!! CCAAATGGTGGTTTTGTTAC+TGG - chr1_2:71237860-71237879 Msa0089630:intron 40.0%
! CCTTTTGTTCCTCCTAATAC+CGG - chr1_2:71238004-71238023 Msa0089630:intron 40.0%
GTAGTTTGACTGCAATTTGG+TGG - chr1_2:71238249-71238268 Msa0089630:five_prime_UTR 40.0%
ACAGGTTTGTGTTAGGATGT+TGG - chr1_2:71238273-71238292 Msa0089630:five_prime_UTR 40.0%
GTGTAGTAGTTGAGATGATG+TGG - chr1_2:71238344-71238363 Msa0089630:five_prime_UTR 40.0%
! GCAAACAAAACAAAGGCACA+TGG + chr1_2:71236086-71236105 None:intergenic 40.0%
GGTAGGTTAAGCTAAGCAAA+TGG + chr1_2:71236292-71236311 None:intergenic 40.0%
AATAATAGAAGGGAGAAGGG+GGG + chr1_2:71236465-71236484 None:intergenic 40.0%
AGTGACCTTCAATTCTCTGA+AGG + chr1_2:71236629-71236648 None:intergenic 40.0%
! GGGGTTCCTTTTATAAGTCA+TGG - chr1_2:71236839-71236858 Msa0089630:CDS 40.0%
AATAGATGCAGAACAGCAGA+AGG - chr1_2:71237157-71237176 Msa0089630:intron 40.0%
!!! TTGTTGGTTTTCTGAGACCA+GGG + chr1_2:71237254-71237273 None:intergenic 40.0%
CAAAGGACAAAAACAAGGAC+TGG - chr1_2:71237325-71237344 Msa0089630:intron 40.0%
!! CAAAAACAAGGACTGGTCAA+AGG - chr1_2:71237332-71237351 Msa0089630:intron 40.0%
TGAATATGATGAGGAAGAGG+AGG - chr1_2:71237421-71237440 Msa0089630:intron 40.0%
AAGATGAACAATGCTGGCAA+TGG - chr1_2:71237545-71237564 Msa0089630:intron 40.0%
AATGCTGGCAATGGAAATAG+TGG - chr1_2:71237554-71237573 Msa0089630:intron 40.0%
AGGAAACCCAAATCAGAACA+TGG - chr1_2:71237583-71237602 Msa0089630:intron 40.0%
CAGAACATGGTTATGAAGGA+AGG - chr1_2:71237596-71237615 Msa0089630:intron 40.0%
!! GTTATGAAGGAAGGTGCTAA+TGG - chr1_2:71237605-71237624 Msa0089630:intron 40.0%
TGGGATTGAGCAGAAAACAA+TGG - chr1_2:71237625-71237644 Msa0089630:intron 40.0%
GGTAATGAAAGTCTCAACCT+TGG - chr1_2:71237689-71237708 Msa0089630:CDS 40.0%
TCAACCTTGGAGAATCCAAA+AGG - chr1_2:71237702-71237721 Msa0089630:CDS 40.0%
CAACCTTGGAGAATCCAAAA+GGG - chr1_2:71237703-71237722 Msa0089630:intron 40.0%
! GGTGCTATGATGAATTTAGC+TGG - chr1_2:71237737-71237756 Msa0089630:intron 40.0%
! GTTCTAGGTGGAAATTCCAA+TGG - chr1_2:71237800-71237819 Msa0089630:intron 40.0%
GGTGGAAATTCCAATGGTTT+AGG - chr1_2:71237806-71237825 Msa0089630:intron 40.0%
GGAAATTCCAATGGTTTAGG+AGG - chr1_2:71237809-71237828 Msa0089630:intron 40.0%
AGGAAAACCTCCTAAACCAT+TGG + chr1_2:71237819-71237838 None:intergenic 40.0%
TCCACTGCATCTATTCCAAA+TGG - chr1_2:71237845-71237864 Msa0089630:intron 40.0%
! ACCATTTGGAATAGATGCAG+TGG + chr1_2:71237849-71237868 None:intergenic 40.0%
ACTGCATCTATTCCAAATGG+TGG - chr1_2:71237848-71237867 Msa0089630:intron 40.0%
CCAGTAACAAAACCACCATT+TGG + chr1_2:71237863-71237882 None:intergenic 40.0%
!!! CCAAATGGTGGTTTTGTTAC+TGG - chr1_2:71237860-71237879 Msa0089630:intron 40.0%
! CCTTTTGTTCCTCCTAATAC+CGG - chr1_2:71238004-71238023 Msa0089630:intron 40.0%
GTAGTTTGACTGCAATTTGG+TGG - chr1_2:71238249-71238268 Msa0089630:five_prime_UTR 40.0%
ACAGGTTTGTGTTAGGATGT+TGG - chr1_2:71238273-71238292 Msa0089630:five_prime_UTR 40.0%
GTGTAGTAGTTGAGATGATG+TGG - chr1_2:71238344-71238363 Msa0089630:five_prime_UTR 40.0%
GTGAGAGAAGGGAAGAGTAA+TGG + chr1_2:71235977-71235996 None:intergenic 45.0%
AGAGTGCAAGGGAAGTGAAA+AGG + chr1_2:71236028-71236047 None:intergenic 45.0%
CTGCTGCTATTACTAGCTAG+TGG + chr1_2:71236174-71236193 None:intergenic 45.0%
CAGCAGAAGGTAACAGTTTC+AGG - chr1_2:71237170-71237189 Msa0089630:intron 45.0%
! GGTAACAGTTTCAGGTAGTG+TGG - chr1_2:71237178-71237197 Msa0089630:intron 45.0%
!!! GTTGTTGGTTTTCTGAGACC+AGG + chr1_2:71237255-71237274 None:intergenic 45.0%
TCCTCTTCGGAACTAAAAGC+CGG + chr1_2:71237389-71237408 None:intergenic 45.0%
ATATGATGAGGAAGAGGAGG+AGG - chr1_2:71237424-71237443 Msa0089630:intron 45.0%
ATGAAGAGATGCGGTTCATC+AGG - chr1_2:71237450-71237469 Msa0089630:intron 45.0%
TGAAGAGATGCGGTTCATCA+GGG - chr1_2:71237451-71237470 Msa0089630:intron 45.0%
! CAATGCTCAATTGGCTCAGT+TGG - chr1_2:71237664-71237683 Msa0089630:CDS 45.0%
GGGAACAATAACAATGGTGC+TGG - chr1_2:71237767-71237786 Msa0089630:intron 45.0%
CATTGATGAACATGCAGGCA+AGG - chr1_2:71237939-71237958 Msa0089630:intron 45.0%
AGCCTCAGATGATGTATCAC+AGG - chr1_2:71237978-71237997 Msa0089630:intron 45.0%
GACCTGTGATACATCATCTG+AGG + chr1_2:71237983-71238002 None:intergenic 45.0%
CCGGTATTAGGAGGAACAAA+AGG + chr1_2:71238007-71238026 None:intergenic 45.0%
GTGAGAGAAGGGAAGAGTAA+TGG + chr1_2:71235977-71235996 None:intergenic 45.0%
AGAGTGCAAGGGAAGTGAAA+AGG + chr1_2:71236028-71236047 None:intergenic 45.0%
CTGCTGCTATTACTAGCTAG+TGG + chr1_2:71236174-71236193 None:intergenic 45.0%
CAGCAGAAGGTAACAGTTTC+AGG - chr1_2:71237170-71237189 Msa0089630:intron 45.0%
! GGTAACAGTTTCAGGTAGTG+TGG - chr1_2:71237178-71237197 Msa0089630:intron 45.0%
!!! GTTGTTGGTTTTCTGAGACC+AGG + chr1_2:71237255-71237274 None:intergenic 45.0%
TCCTCTTCGGAACTAAAAGC+CGG + chr1_2:71237389-71237408 None:intergenic 45.0%
ATATGATGAGGAAGAGGAGG+AGG - chr1_2:71237424-71237443 Msa0089630:intron 45.0%
ATGAAGAGATGCGGTTCATC+AGG - chr1_2:71237450-71237469 Msa0089630:intron 45.0%
TGAAGAGATGCGGTTCATCA+GGG - chr1_2:71237451-71237470 Msa0089630:intron 45.0%
! CAATGCTCAATTGGCTCAGT+TGG - chr1_2:71237664-71237683 Msa0089630:CDS 45.0%
GGGAACAATAACAATGGTGC+TGG - chr1_2:71237767-71237786 Msa0089630:intron 45.0%
CATTGATGAACATGCAGGCA+AGG - chr1_2:71237939-71237958 Msa0089630:intron 45.0%
AGCCTCAGATGATGTATCAC+AGG - chr1_2:71237978-71237997 Msa0089630:intron 45.0%
GACCTGTGATACATCATCTG+AGG + chr1_2:71237983-71238002 None:intergenic 45.0%
CCGGTATTAGGAGGAACAAA+AGG + chr1_2:71238007-71238026 None:intergenic 45.0%
!!! TATATATTTTTAAGAAAAAA+AGG + chr1_2:71236996-71237015 None:intergenic 5.0%
!!! TATATATTTTTAAGAAAAAA+AGG + chr1_2:71236996-71237015 None:intergenic 5.0%
AGAGAGAGAGGAGAGAGAGA+GGG + chr1_2:71235926-71235945 None:intergenic 50.0%
!! TAAGGGGAGAAAGAGGTACC+TGG + chr1_2:71236388-71236407 None:intergenic 50.0%
CTGGAAAATATGCTGAGCCC+TGG - chr1_2:71237234-71237253 Msa0089630:intron 50.0%
!!! TCCGGCTTTTAGTTCCGAAG+AGG - chr1_2:71237385-71237404 Msa0089630:intron 50.0%
AGGAGGAGGATGAAGAGATG+CGG - chr1_2:71237441-71237460 Msa0089630:intron 50.0%
! GCTCAATTGGCTCAGTTGGT+TGG - chr1_2:71237668-71237687 Msa0089630:CDS 50.0%
! TCGCCCTTTTGGATTCTCCA+AGG + chr1_2:71237709-71237728 None:intergenic 50.0%
TCCAAAAGGGCGAGTGACAT+TGG - chr1_2:71237716-71237735 Msa0089630:intron 50.0%
! ACCAATGTCACTCGCCCTTT+TGG + chr1_2:71237720-71237739 None:intergenic 50.0%
! GCTGGTAGTGCTACTGTTCT+AGG - chr1_2:71237785-71237804 Msa0089630:intron 50.0%
! GGTAGTGCTACTGTTCTAGG+TGG - chr1_2:71237788-71237807 Msa0089630:intron 50.0%
! GGTTTAGGAGGTTTTCCTGC+AGG - chr1_2:71237821-71237840 Msa0089630:intron 50.0%
ATAGATGCAGTGGATCCTGC+AGG + chr1_2:71237839-71237858 None:intergenic 50.0%
! TGACTGCAATTTGGTGGGAC+AGG - chr1_2:71238255-71238274 Msa0089630:five_prime_UTR 50.0%
TGGTGGGACAGGTTTGTGTT+AGG - chr1_2:71238266-71238285 Msa0089630:five_prime_UTR 50.0%
AGAGGAGAGAGAGAGGGTTT+GGG + chr1_2:71235920-71235939 None:intergenic 50.0%
AGAGAGAGAGGAGAGAGAGA+GGG + chr1_2:71235926-71235945 None:intergenic 50.0%
!! TAAGGGGAGAAAGAGGTACC+TGG + chr1_2:71236388-71236407 None:intergenic 50.0%
CTGGAAAATATGCTGAGCCC+TGG - chr1_2:71237234-71237253 Msa0089630:intron 50.0%
!!! TCCGGCTTTTAGTTCCGAAG+AGG - chr1_2:71237385-71237404 Msa0089630:intron 50.0%
AGGAGGAGGATGAAGAGATG+CGG - chr1_2:71237441-71237460 Msa0089630:intron 50.0%
! GCTCAATTGGCTCAGTTGGT+TGG - chr1_2:71237668-71237687 Msa0089630:CDS 50.0%
! TCGCCCTTTTGGATTCTCCA+AGG + chr1_2:71237709-71237728 None:intergenic 50.0%
TCCAAAAGGGCGAGTGACAT+TGG - chr1_2:71237716-71237735 Msa0089630:intron 50.0%
! ACCAATGTCACTCGCCCTTT+TGG + chr1_2:71237720-71237739 None:intergenic 50.0%
! GCTGGTAGTGCTACTGTTCT+AGG - chr1_2:71237785-71237804 Msa0089630:intron 50.0%
! GGTAGTGCTACTGTTCTAGG+TGG - chr1_2:71237788-71237807 Msa0089630:intron 50.0%
! GGTTTAGGAGGTTTTCCTGC+AGG - chr1_2:71237821-71237840 Msa0089630:intron 50.0%
ATAGATGCAGTGGATCCTGC+AGG + chr1_2:71237839-71237858 None:intergenic 50.0%
! TGACTGCAATTTGGTGGGAC+AGG - chr1_2:71238255-71238274 Msa0089630:five_prime_UTR 50.0%
TGGTGGGACAGGTTTGTGTT+AGG - chr1_2:71238266-71238285 Msa0089630:five_prime_UTR 50.0%
GAGAGAGAGAGGAGAGAGAG+AGG + chr1_2:71235927-71235946 None:intergenic 55.0%
TGATGAGGAAGAGGAGGAGG+AGG - chr1_2:71237427-71237446 Msa0089630:intron 55.0%
GCTGCAGAGTGATCATCCGT+TGG + chr1_2:71238091-71238110 None:intergenic 55.0%
GAGAGGAGAGAGAGAGGGTT+TGG + chr1_2:71235921-71235940 None:intergenic 55.0%
GAGAGAGAGAGGAGAGAGAG+AGG + chr1_2:71235927-71235946 None:intergenic 55.0%
TGATGAGGAAGAGGAGGAGG+AGG - chr1_2:71237427-71237446 Msa0089630:intron 55.0%
GCTGCAGAGTGATCATCCGT+TGG + chr1_2:71238091-71238110 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 71235919 71238369 71235919 ID=Msa0089630;Name=Msa0089630
chr1_2 mRNA 71235919 71238369 71235919 ID=Msa0089630-mRNA-1;Parent=Msa0089630;Name=Msa0089630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=307|1|1|1|0.66|0.5|4|210|377
chr1_2 exon 71235919 71237147 71235919 ID=Msa0089630-mRNA-1:exon:24553;Parent=Msa0089630-mRNA-1
chr1_2 exon 71237646 71237721 71237646 ID=Msa0089630-mRNA-1:exon:24552;Parent=Msa0089630-mRNA-1
chr1_2 exon 71237900 71237954 71237900 ID=Msa0089630-mRNA-1:exon:24551;Parent=Msa0089630-mRNA-1
chr1_2 exon 71238079 71238369 71238079 ID=Msa0089630-mRNA-1:exon:24550;Parent=Msa0089630-mRNA-1
chr1_2 five_prime_UTR 71238079 71238369 71238079 ID=Msa0089630-mRNA-1:five_prime_utr;Parent=Msa0089630-mRNA-1
chr1_2 five_prime_UTR 71237939 71237954 71237939 ID=Msa0089630-mRNA-1:five_prime_utr;Parent=Msa0089630-mRNA-1
chr1_2 CDS 71237900 71237938 71237900 ID=Msa0089630-mRNA-1:cds;Parent=Msa0089630-mRNA-1
chr1_2 CDS 71237646 71237721 71237646 ID=Msa0089630-mRNA-1:cds;Parent=Msa0089630-mRNA-1
chr1_2 CDS 71236129 71237147 71236129 ID=Msa0089630-mRNA-1:cds;Parent=Msa0089630-mRNA-1
chr1_2 three_prime_UTR 71235919 71236128 71235919 ID=Msa0089630-mRNA-1:three_prime_utr;Parent=Msa0089630-mRNA-1
Gene Sequence

>Msa0089630

ATGACTAAAGAAGAAGACTTTAAGCTCCTTAAAATCCAGACTTGTGTTCTCAAAGTGAACATTCACTGTGATGGTTGTAAGCAGAAAGTGAAGAAACTCCTTCAGAGAATTGAAGGTGTTTACCAAGTTCAAATAGATGCAGAACAGCAGAAGGTAACAGTTTCAGGTAGTGTGGATGCTGCAACTTTGATCAAGAAACTAGTAAGATCTGGAAAATATGCTGAGCCCTGGTCTCAGAAAACCAACAACAATCAGAATCAAAAGCAGAAGAACAACAACAATGTCAAAGATGACAAGAACAAAGGACAAAAACAAGGACTGGTCAAAGGGCTTGAAGTCTTCAAAAATCAGCAGAAATTTCCGGCTTTTAGTTCCGAAGAGGATGATGAATATTATGAATATGATGAGGAAGAGGAGGAGGAGGATGAAGAGATGCGGTTCATCAGGGAGAAAGCCAATCATTTTCAGATGCTAAAGCAAGCAACAGATGCAAACAATGTGAAGAAAGGTATTATAGCTAAGATGAACAATGCTGGCAATGGAAATAGTGGCAAGAAAGGAAACCCAAATCAGAACATGGTTATGAAGGAAGGTGCTAATGGGATTGAGCAGAAAACAATGGCAGCTATGAAGTTGAACAATGCTCAATTGGCTCAGTTGGTTGGTAATGAAAGTCTCAACCTTGGAGAATCCAAAAGGGCGAGTGACATTGGTGCTATGATGAATTTAGCTGGTTTTAATGGGAACAATAACAATGGTGCTGGTAGTGCTACTGTTCTAGGTGGAAATTCCAATGGTTTAGGAGGTTTTCCTGCAGGATCCACTGCATCTATTCCAAATGGTGGTTTTGTTACTGGCCAATATCCACCATCTATGTTAATGAACATGAATGGTTTCAATAACCATCCATCTTCATTGATGAACATGCAGGCAAGGCATGCTATGCAGCAACAGCCTCAGATGATGTATCACAGGTCACCTTTTGTTCCTCCTAATACCGGCTATTATTACAATTATAATAACTACATTCCTGCAAATTACTCCTATGCAAATGCTTGTTATCCAACGGATGATCACTCTGCAGCACACATGTTCAGTGATGACAATACTACCAGCAGCTGTTCAATAATGTAA

Protein sequence

>Msa0089630

MTKEEDFKLLKIQTCVLKVNIHCDGCKQKVKKLLQRIEGVYQVQIDAEQQKVTVSGSVDAATLIKKLVRSGKYAEPWSQKTNNNQNQKQKNNNNVKDDKNKGQKQGLVKGLEVFKNQQKFPAFSSEEDDEYYEYDEEEEEEDEEMRFIREKANHFQMLKQATDANNVKKGIIAKMNNAGNGNSGKKGNPNQNMVMKEGANGIEQKTMAAMKLNNAQLAQLVGNESLNLGESKRASDIGAMMNLAGFNGNNNNGAGSATVLGGNSNGLGGFPAGSTASIPNGGFVTGQYPPSMLMNMNGFNNHPSSLMNMQARHAMQQQPQMMYHRSPFVPPNTGYYYNYNNYIPANYSYANACYPTDDHSAAHMFSDDNTTSSCSIM*