Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118600 | XP_013467744.1 | 99.231 | 390 | 3 | 0 | 1 | 390 | 1 | 390 | 0.0 | 801 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118600 | A0A072VJK6 | 99.231 | 390 | 3 | 0 | 1 | 390 | 1 | 390 | 0.0 | 801 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070250 | Msa0118600 | 0.802860 | 4.591402e-49 | -8.615850e-47 |
| Msa0118600 | Msa0142110 | 0.810400 | 1.174348e-50 | -8.615850e-47 |
| Msa0118600 | Msa0144380 | 0.943190 | 1.879004e-102 | -8.615850e-47 |
| Msa0118600 | Msa0167400 | 0.808646 | 2.796054e-50 | -8.615850e-47 |
| Msa0118600 | Msa0656810 | 0.816801 | 4.584741e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118600 | MtrunA17_Chr1g0176191 | 98.214 | 392 | 7 | 0 | 1 | 392 | 1 | 392 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118600 | AT3G11950.3 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.32e-154 | 448 |
| Msa0118600 | AT3G11950.5 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.32e-154 | 448 |
| Msa0118600 | AT3G11950.1 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.32e-154 | 448 |
| Msa0118600 | AT3G11950.2 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.32e-154 | 448 |
| Msa0118600 | AT3G11950.4 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.32e-154 | 448 |
Find 101 sgRNAs with CRISPR-Local
Find 381 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTAATGCACTTGCTTAA+AGG | 0.113512 | 1_3:+41475919 | Msa0118600:CDS |
| GTCTTCACTGTCTTCATTCT+TGG | 0.160455 | 1_3:-41479742 | None:intergenic |
| AACGATCATTGTTGATTGAT+TGG | 0.280810 | 1_3:-41474596 | None:intergenic |
| TCACATGGAATTATCTTAAA+AGG | 0.281351 | 1_3:-41475736 | None:intergenic |
| AATTTATTGAGTCAGGTTTC+GGG | 0.289208 | 1_3:+41475433 | Msa0118600:CDS |
| TTCGTCTTTGTTAACAAAAC+TGG | 0.295145 | 1_3:-41475605 | None:intergenic |
| GAATTTATTGAGTCAGGTTT+CGG | 0.295772 | 1_3:+41475432 | Msa0118600:CDS |
| AAGAAAGCGCAGCTAAATTT+AGG | 0.296268 | 1_3:-41474544 | None:intergenic |
| TAGCCTTATGAGGCGTGATA+TGG | 0.344694 | 1_3:+41475774 | Msa0118600:CDS |
| TGAAGCTAAGCTAGGGCCTT+TGG | 0.348568 | 1_3:+41479680 | Msa0118600:CDS |
| ACTTGAGCCTTAGCTCAGTT+TGG | 0.351932 | 1_3:+41480069 | Msa0118600:three_prime_UTR |
| AGACTTACTCTTGGAGTCAA+TGG | 0.382204 | 1_3:-41480313 | None:intergenic |
| CTCAGTTTATTCTTCATCAA+TGG | 0.382284 | 1_3:+41480154 | Msa0118600:three_prime_UTR |
| TGTTGCTGAGACTGTTATCT+TGG | 0.399244 | 1_3:+41475327 | Msa0118600:CDS |
| GTTTAGCGCGGTTCATTTGA+AGG | 0.406768 | 1_3:+41475696 | Msa0118600:CDS |
| GAAGAGGAATTTATTGAGTC+AGG | 0.419021 | 1_3:+41475426 | Msa0118600:CDS |
| ATCGGCTATTGCGCAATGTA+TGG | 0.422921 | 1_3:+41475864 | Msa0118600:CDS |
| AACTGCCCTTTCTATGCTGT+TGG | 0.425142 | 1_3:+41475835 | Msa0118600:CDS |
| TAAGCAGAAATATGTTTGTT+TGG | 0.426351 | 1_3:-41479901 | None:intergenic |
| TACAGGCATCAACAAACAAT+AGG | 0.435764 | 1_3:+41479607 | Msa0118600:intron |
| GCTTGTGTTGATAACACAAC+TGG | 0.444341 | 1_3:+41475226 | Msa0118600:CDS |
| CTATGCTGTTGGTTGTCGAT+CGG | 0.449296 | 1_3:+41475846 | Msa0118600:CDS |
| GACGGACGGAGTATTGGTTA+TGG | 0.450362 | 1_3:+41474478 | Msa0118600:five_prime_UTR |
| TGTCCATATCACGCCTCATA+AGG | 0.451239 | 1_3:-41475777 | None:intergenic |
| GATGCATGTTGGTGACGGTT+TGG | 0.466285 | 1_3:-41480207 | None:intergenic |
| GAGGAGAATGTTCGTTCAAA+AGG | 0.469261 | 1_3:-41474506 | None:intergenic |
| GTTCAGTTGCGGATGGTTTG+AGG | 0.469645 | 1_3:+41475263 | Msa0118600:CDS |
| GCAGAAATATGTTTGTTTGG+TGG | 0.472471 | 1_3:-41479898 | None:intergenic |
| ATCTGTGACCTGCGATAATG+AGG | 0.473160 | 1_3:+41475660 | Msa0118600:CDS |
| GTTGGCTCAAATGTTTCTGC+CGG | 0.479339 | 1_3:+41475192 | Msa0118600:CDS |
| AGGATTGAAAATGAGAAAGA+AGG | 0.492296 | 1_3:+41475121 | Msa0118600:CDS |
| TTTAGAGACGGACGGAGTAT+TGG | 0.495074 | 1_3:+41474472 | Msa0118600:five_prime_UTR |
| GTTCAGGAGATGGAAATGAA+TGG | 0.500637 | 1_3:+41475499 | Msa0118600:CDS |
| AAACTAGAAATAATATCAAA+AGG | 0.501827 | 1_3:-41475382 | None:intergenic |
| AGAGATCTTGAAGCTAAGCT+AGG | 0.503265 | 1_3:+41479672 | Msa0118600:CDS |
| TCTATGAGATTGACTTCCAA+AGG | 0.522809 | 1_3:-41479696 | None:intergenic |
| AATAATATCAAAAGGATGAT+CGG | 0.523155 | 1_3:-41475374 | None:intergenic |
| GACACAGGCACGGAAACAAA+GGG | 0.526060 | 1_3:+41479762 | Msa0118600:CDS |
| GGGCAGTTCACAAGCTTCAT+CGG | 0.528102 | 1_3:-41475820 | None:intergenic |
| CGACAACCAACAGCATAGAA+AGG | 0.528343 | 1_3:-41475841 | None:intergenic |
| AAACCATCCGCAACTGAACC+AGG | 0.528729 | 1_3:-41475259 | None:intergenic |
| TCTGTACACTTCTGCTCACA+TGG | 0.532465 | 1_3:-41475751 | None:intergenic |
| TTGGCTCAAATGTTTCTGCC+GGG | 0.539679 | 1_3:+41475193 | Msa0118600:CDS |
| CCATTGTGATTTGCATGATA+CGG | 0.541523 | 1_3:+41475156 | Msa0118600:CDS |
| GGCATCCACAAGGATGCATC+CGG | 0.542874 | 1_3:+41475940 | Msa0118600:CDS |
| TAGGAGAGGAATCAGAGTGG+AGG | 0.543116 | 1_3:-41474525 | None:intergenic |
| AACTAATCCAAACTGAGCTA+AGG | 0.548397 | 1_3:-41480076 | None:intergenic |
| TTATGAGGCGTGATATGGAC+AGG | 0.553179 | 1_3:+41475779 | Msa0118600:CDS |
| GACAACCAACAGCATAGAAA+GGG | 0.556536 | 1_3:-41475840 | None:intergenic |
| GCTATTGCGCAATGTATGGT+TGG | 0.558045 | 1_3:+41475868 | Msa0118600:CDS |
| CAACACACCTGGTTCAGTTG+CGG | 0.561259 | 1_3:+41475252 | Msa0118600:CDS |
| AAGAGTAGAACAGATTGTAC+AGG | 0.568687 | 1_3:+41475978 | Msa0118600:CDS |
| AGACACAGGCACGGAAACAA+AGG | 0.570576 | 1_3:+41479761 | Msa0118600:CDS |
| TGCAAATCACAATGGAACAT+TGG | 0.574064 | 1_3:-41475148 | None:intergenic |
| GAGACTGTTATCTTGGATGA+TGG | 0.574553 | 1_3:+41475334 | Msa0118600:CDS |
| TTGGATGATGGTGCGGATGG+TGG | 0.576679 | 1_3:+41475346 | Msa0118600:CDS |
| AAGGAAGAAACTCACCGACA+TGG | 0.577979 | 1_3:-41474642 | None:intergenic |
| GAAAGATCCACGTCAACGGT+TGG | 0.586244 | 1_3:-41475091 | None:intergenic |
| GGAAGCGCCAACCGTTGACG+TGG | 0.586376 | 1_3:+41475084 | Msa0118600:CDS |
| AAACGACTGTTGTTTAGAGA+CGG | 0.588921 | 1_3:+41474460 | None:intergenic |
| ATCTTGGATGATGGTGCGGA+TGG | 0.589438 | 1_3:+41475343 | Msa0118600:CDS |
| CTTGCTATAGTATTTGACGT+TGG | 0.590114 | 1_3:-41480240 | None:intergenic |
| AGTTGCGGATGGTTTGAGGA+AGG | 0.592013 | 1_3:+41475267 | Msa0118600:CDS |
| GCTGTGAATAATGAAGAAGT+TGG | 0.592703 | 1_3:+41479858 | Msa0118600:three_prime_UTR |
| ACACCTGGTTCAGTTGCGGA+TGG | 0.596519 | 1_3:+41475256 | Msa0118600:CDS |
| ATTGCATCCCTCATTATCGC+AGG | 0.597446 | 1_3:-41475668 | None:intergenic |
| TGAAGTTACAATTATCAACA+TGG | 0.598667 | 1_3:-41475636 | None:intergenic |
| CTCCACCGGATGCATCCTTG+TGG | 0.601442 | 1_3:-41475945 | None:intergenic |
| GAACTTCTAAGTTCTAAGTG+AGG | 0.602483 | 1_3:+41479986 | Msa0118600:three_prime_UTR |
| TCTTCGATTAAGATCTCCAC+CGG | 0.603492 | 1_3:-41475959 | None:intergenic |
| ACAACTGGCTTCAACACACC+TGG | 0.605123 | 1_3:+41475241 | Msa0118600:CDS |
| TGAAGAATAAACTGAGGTTG+AGG | 0.605693 | 1_3:-41480147 | None:intergenic |
| ATGAAGATGCATGTTGGTGA+CGG | 0.608130 | 1_3:-41480212 | None:intergenic |
| GAGATCTTGAAGCTAAGCTA+GGG | 0.610250 | 1_3:+41479673 | Msa0118600:CDS |
| GAAGTTACAATTATCAACAT+GGG | 0.610841 | 1_3:-41475635 | None:intergenic |
| AAACTGAGCTAAGGCTCAAG+TGG | 0.613416 | 1_3:-41480067 | None:intergenic |
| AGGAAGAAACTCACCGACAT+GGG | 0.618238 | 1_3:-41474641 | None:intergenic |
| TACGGAAGTAGTTCACAAGT+TGG | 0.621304 | 1_3:+41475174 | Msa0118600:CDS |
| AGTGTACAGATAGCCTTATG+AGG | 0.626223 | 1_3:+41475764 | Msa0118600:CDS |
| TATTGAGTCAGGTTTCGGGA+TGG | 0.626853 | 1_3:+41475437 | Msa0118600:CDS |
| AGGCGAAAGATCCACGTCAA+CGG | 0.627431 | 1_3:-41475095 | None:intergenic |
| CCGTATCATGCAAATCACAA+TGG | 0.628266 | 1_3:-41475156 | None:intergenic |
| GAGAAGATGAAGATGCATGT+TGG | 0.629023 | 1_3:-41480218 | None:intergenic |
| AGCGCAGCTAAATTTAGGAG+AGG | 0.630174 | 1_3:-41474539 | None:intergenic |
| ACACAAGCAGAAGCTAGACC+CGG | 0.634233 | 1_3:-41475211 | None:intergenic |
| TAAAAGGACAATGTGAATCG+TGG | 0.635470 | 1_3:-41475720 | None:intergenic |
| ACGTGGATCTTTCGCCTGCG+AGG | 0.635983 | 1_3:+41475101 | Msa0118600:CDS |
| ATTGAAAATGAGAAAGAAGG+AGG | 0.639437 | 1_3:+41475124 | Msa0118600:CDS |
| GCATCATCATTAATAGAACA+AGG | 0.641108 | 1_3:+41480176 | Msa0118600:three_prime_UTR |
| GACTGTTGTTTAGAGACGGA+CGG | 0.642124 | 1_3:+41474464 | None:intergenic |
| CTTGCTTAAAGGCATCCACA+AGG | 0.652007 | 1_3:+41475930 | Msa0118600:CDS |
| ATCCACAAGGATGCATCCGG+TGG | 0.656272 | 1_3:+41475943 | Msa0118600:CDS |
| ATGCAATGCGAGGTTTAGCG+CGG | 0.663261 | 1_3:+41475684 | Msa0118600:CDS |
| TGTTATCTTGGATGATGGTG+CGG | 0.668976 | 1_3:+41475339 | Msa0118600:CDS |
| CATCACATCACAACCCATGT+CGG | 0.674089 | 1_3:+41474628 | Msa0118600:exon |
| AGACAGTGAAGACACAGGCA+CGG | 0.690996 | 1_3:+41479752 | Msa0118600:CDS |
| TCTGTGACCTGCGATAATGA+GGG | 0.696713 | 1_3:+41475661 | Msa0118600:CDS |
| ATAATGAGGGATGCAATGCG+AGG | 0.701753 | 1_3:+41475674 | Msa0118600:CDS |
| ATTTAGGAGAGGAATCAGAG+TGG | 0.714521 | 1_3:-41474528 | None:intergenic |
| AATGAAGACAGTGAAGACAC+AGG | 0.715607 | 1_3:+41479747 | Msa0118600:CDS |
| CATTGATGAAGAATAAACTG+AGG | 0.791389 | 1_3:-41480153 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCTCAAAAAAAAAAAAA+AGG | + | chr1_3:41476332-41476351 | Msa0118600:intron | 10.0% |
| !!! | TTTTTTTTTATAAACTCAAA+CGG | - | chr1_3:41476616-41476635 | None:intergenic | 10.0% |
| !!! | AATTTTTTTTTTTTAAACCT+TGG | - | chr1_3:41476786-41476805 | None:intergenic | 10.0% |
| !! | AGGTTTAAAAAAAAAAAATT+TGG | + | chr1_3:41476786-41476805 | Msa0118600:intron | 10.0% |
| !!! | AATTCATTTATAATTTGTTT+AGG | - | chr1_3:41477458-41477477 | None:intergenic | 10.0% |
| !! | ATATATATATATATATGAGA+AGG | + | chr1_3:41480287-41480306 | Msa0118600:three_prime_UTR | 10.0% |
| !! | TATATATATATATATGAGAA+GGG | + | chr1_3:41480288-41480307 | Msa0118600:three_prime_UTR | 10.0% |
| !! | ATTGATTATTGATAAAACAA+GGG | + | chr1_3:41474991-41475010 | Msa0118600:intron | 15.0% |
| !!! | TATTTATAAAATTTGTTGGT+AGG | + | chr1_3:41475048-41475067 | Msa0118600:intron | 15.0% |
| !! | AAACTAGAAATAATATCAAA+AGG | - | chr1_3:41475385-41475404 | None:intergenic | 15.0% |
| !! | TCAAAAAAAAAAAAAAGGTA+CGG | + | chr1_3:41476337-41476356 | Msa0118600:intron | 15.0% |
| !!! | TTTGAATTTTGATATTATGT+TGG | - | chr1_3:41478099-41478118 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTAATGATGGT+GGG | - | chr1_3:41478473-41478492 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATTAATGATGG+TGG | - | chr1_3:41478474-41478493 | None:intergenic | 15.0% |
| !! | AATAAATTAGATTTCAAACA+AGG | + | chr1_3:41478777-41478796 | Msa0118600:intron | 15.0% |
| !! | ACTATTTACAATATCAAAAA+AGG | + | chr1_3:41480027-41480046 | Msa0118600:three_prime_UTR | 15.0% |
| !!! | CATTTTGTAAATACAAAAAC+TGG | - | chr1_3:41474809-41474828 | None:intergenic | 20.0% |
| !!! | CAGTTTTTGTATTTACAAAA+TGG | + | chr1_3:41474807-41474826 | Msa0118600:intron | 20.0% |
| !! | TTATCAAATTGATACAATCT+AGG | - | chr1_3:41474962-41474981 | None:intergenic | 20.0% |
| !!! | GTTTTATCAATAATCAATGA+TGG | - | chr1_3:41474989-41475008 | None:intergenic | 20.0% |
| !!! | CATTGATTATTGATAAAACA+AGG | + | chr1_3:41474990-41475009 | Msa0118600:intron | 20.0% |
| !! | AATAATATCAAAAGGATGAT+CGG | - | chr1_3:41475377-41475396 | None:intergenic | 20.0% |
| !!! | TAAAATAGATGATTTTGTTC+AGG | + | chr1_3:41475483-41475502 | Msa0118600:CDS | 20.0% |
| !! | CATTAATAACTCTATCTATA+TGG | - | chr1_3:41476018-41476037 | None:intergenic | 20.0% |
| !!! | CAAAAAAAAAAAAAAGGTAC+GGG | + | chr1_3:41476338-41476357 | Msa0118600:intron | 20.0% |
| !!! | TAATTTAAAATAACATGGCA+AGG | + | chr1_3:41476385-41476404 | Msa0118600:intron | 20.0% |
| !!! | GCTTTTATAGAATATGAAAA+AGG | + | chr1_3:41476455-41476474 | Msa0118600:intron | 20.0% |
| !!! | GTTTTTTCATGAGAATTAAT+AGG | - | chr1_3:41476654-41476673 | None:intergenic | 20.0% |
| !! | TGAGAATTAATAGCAATTAT+AGG | - | chr1_3:41476688-41476707 | None:intergenic | 20.0% |
| !!! | TATAATTGCTATTAATTCTC+AGG | + | chr1_3:41476687-41476706 | Msa0118600:intron | 20.0% |
| !!! | TTTTTTTTCTTGAGAAAATG+AGG | - | chr1_3:41476718-41476737 | None:intergenic | 20.0% |
| !!! | CATTTTCTCAAGAAAAAAAA+TGG | + | chr1_3:41476718-41476737 | Msa0118600:intron | 20.0% |
| !!! | TTTTTTTTTAAACCTTGGTA+TGG | - | chr1_3:41476781-41476800 | None:intergenic | 20.0% |
| !! | AAAAAAAATTTGGTACATCA+TGG | + | chr1_3:41476796-41476815 | Msa0118600:intron | 20.0% |
| !! | AAAAAAATTTGGTACATCAT+GGG | + | chr1_3:41476797-41476816 | Msa0118600:intron | 20.0% |
| !!! | TACAATTTGTTTCATAAATC+TGG | + | chr1_3:41477511-41477530 | Msa0118600:intron | 20.0% |
| !! | TCTCCTTTCATAATAATAAA+TGG | + | chr1_3:41477711-41477730 | Msa0118600:intron | 20.0% |
| !! | TCTCCATTTATTATTATGAA+AGG | - | chr1_3:41477717-41477736 | None:intergenic | 20.0% |
| !! | TCCTAAAATTTATGAAATAG+CGG | - | chr1_3:41477879-41477898 | None:intergenic | 20.0% |
| !! | TAAAACCTTTCATAAGATTT+AGG | - | chr1_3:41478014-41478033 | None:intergenic | 20.0% |
| !!! | TTTCGTAATGTTTTGAATTT+TGG | - | chr1_3:41478064-41478083 | None:intergenic | 20.0% |
| !!! | GGATTTAATGTTTTGAATTT+TGG | - | chr1_3:41478130-41478149 | None:intergenic | 20.0% |
| !!! | AATTATCAGTTCTTTTCTTT+AGG | - | chr1_3:41478151-41478170 | None:intergenic | 20.0% |
| !!! | CTTGGTTTTAAAAAAAACAA+GGG | - | chr1_3:41478260-41478279 | None:intergenic | 20.0% |
| !! | AAAGAAAAAACTGAACTATT+TGG | - | chr1_3:41478568-41478587 | None:intergenic | 20.0% |
| !!! | TAACCTTACATTTTTTTTTG+GGG | - | chr1_3:41478818-41478837 | None:intergenic | 20.0% |
| !!! | GTAACCTTACATTTTTTTTT+GGG | - | chr1_3:41478819-41478838 | None:intergenic | 20.0% |
| !! | CATGTACAACAATATAATTA+GGG | + | chr1_3:41478937-41478956 | Msa0118600:intron | 20.0% |
| !! | ATGTACAACAATATAATTAG+GGG | + | chr1_3:41478938-41478957 | Msa0118600:intron | 20.0% |
| !!! | TAAATTTTTAGACACTAATG+AGG | + | chr1_3:41479232-41479251 | Msa0118600:intron | 20.0% |
| !! | GATACATGTATTATTATGTT+TGG | + | chr1_3:41479305-41479324 | Msa0118600:intron | 20.0% |
| !! | TTTCATACTGAATTGTATAT+AGG | + | chr1_3:41479500-41479519 | Msa0118600:intron | 20.0% |
| !!! | TTAGTCTTGAAAACTTTTAA+TGG | - | chr1_3:41479955-41479974 | None:intergenic | 20.0% |
| ! | CTAGCATTTCTTTATATCTT+CGG | + | chr1_3:41474742-41474761 | Msa0118600:intron | 25.0% |
| !!! | CATGTTTTTGAAGAATTCTT+TGG | + | chr1_3:41474866-41474885 | Msa0118600:intron | 25.0% |
| ! | GAAGTTACAATTATCAACAT+GGG | - | chr1_3:41475638-41475657 | None:intergenic | 25.0% |
| ! | TGAAGTTACAATTATCAACA+TGG | - | chr1_3:41475639-41475658 | None:intergenic | 25.0% |
| ! | TCACATGGAATTATCTTAAA+AGG | - | chr1_3:41475739-41475758 | None:intergenic | 25.0% |
| ! | GATAGAGTTATTAATGAATG+TGG | + | chr1_3:41476022-41476041 | Msa0118600:intron | 25.0% |
| ! | AGTTATTAATGAATGTGGAT+CGG | + | chr1_3:41476027-41476046 | Msa0118600:intron | 25.0% |
| !! | TACACCATTAGAAGTTTTTA+AGG | + | chr1_3:41476239-41476258 | Msa0118600:intron | 25.0% |
| ! | AGATAAGAAGATACAAGAAA+AGG | + | chr1_3:41476479-41476498 | Msa0118600:intron | 25.0% |
| !!! | TTTTTTACTTCTGCAACTAT+TGG | + | chr1_3:41476516-41476535 | Msa0118600:intron | 25.0% |
| !! | ACTATTTTCAGTTTCAAAAG+AGG | + | chr1_3:41476931-41476950 | Msa0118600:intron | 25.0% |
| !!! | TAGGATTAGTTTGTAGTTTA+TGG | + | chr1_3:41477076-41477095 | Msa0118600:intron | 25.0% |
| ! | TCATCATTAATAGGACTAAT+AGG | + | chr1_3:41477188-41477207 | Msa0118600:intron | 25.0% |
| ! | ATGTGATATAGTTTATGTGA+TGG | - | chr1_3:41477396-41477415 | None:intergenic | 25.0% |
| ! | ATCACATAAACTATATCACA+TGG | + | chr1_3:41477395-41477414 | Msa0118600:intron | 25.0% |
| !! | ACATGGTTTTCTACTTTAAA+AGG | + | chr1_3:41477412-41477431 | Msa0118600:intron | 25.0% |
| !!! | CATGGTTTTCTACTTTAAAA+GGG | + | chr1_3:41477413-41477432 | Msa0118600:intron | 25.0% |
| !!! | AAGGGTTCATTTTTTAATTG+TGG | + | chr1_3:41477431-41477450 | Msa0118600:intron | 25.0% |
| ! | ATGAATTAAAACAAGATTCC+TGG | + | chr1_3:41477471-41477490 | Msa0118600:intron | 25.0% |
| ! | TGAATTAAAACAAGATTCCT+GGG | + | chr1_3:41477472-41477491 | Msa0118600:intron | 25.0% |
| !!! | ATTTTAACATGTAGTTCATC+CGG | - | chr1_3:41477576-41477595 | None:intergenic | 25.0% |
| ! | AAACTAAAACATCAACACAA+TGG | - | chr1_3:41477653-41477672 | None:intergenic | 25.0% |
| !! | TTTTTGTGTGTATTTCCAAA+TGG | - | chr1_3:41477743-41477762 | None:intergenic | 25.0% |
| ! | TTGGAAATACACACAAAAAA+AGG | + | chr1_3:41477744-41477763 | Msa0118600:intron | 25.0% |
| !!! | ACCGCTATTTCATAAATTTT+AGG | + | chr1_3:41477875-41477894 | Msa0118600:intron | 25.0% |
| ! | AGAGAAAACTGAAGTTATTA+GGG | + | chr1_3:41478212-41478231 | Msa0118600:intron | 25.0% |
| !!! | CCTTGGTTTTAAAAAAAACA+AGG | - | chr1_3:41478261-41478280 | None:intergenic | 25.0% |
| !!! | CCTTGTTTTTTTTAAAACCA+AGG | + | chr1_3:41478258-41478277 | Msa0118600:intron | 25.0% |
| !!! | AACCTTACATTTTTTTTTGG+GGG | - | chr1_3:41478817-41478836 | None:intergenic | 25.0% |
| !!! | GGTAACCTTACATTTTTTTT+TGG | - | chr1_3:41478820-41478839 | None:intergenic | 25.0% |
| ! | AATTATATTGTTGTACATGG+TGG | - | chr1_3:41478936-41478955 | None:intergenic | 25.0% |
| ! | CCTAATTATATTGTTGTACA+TGG | - | chr1_3:41478939-41478958 | None:intergenic | 25.0% |
| ! | CCATGTACAACAATATAATT+AGG | + | chr1_3:41478936-41478955 | Msa0118600:intron | 25.0% |
| ! | TTGCAGCATTTGTTTATATT+TGG | + | chr1_3:41479529-41479548 | Msa0118600:intron | 25.0% |
| ! | TGATTATGACAAGAAAAATC+AGG | - | chr1_3:41479565-41479584 | None:intergenic | 25.0% |
| !! | CGAATTATTTGTCTTATTAC+AGG | + | chr1_3:41479590-41479609 | Msa0118600:intron | 25.0% |
| ! | TAAGCAGAAATATGTTTGTT+TGG | - | chr1_3:41479904-41479923 | None:intergenic | 25.0% |
| ! | AACGATCATTGTTGATTGAT+TGG | - | chr1_3:41474599-41474618 | None:intergenic | 30.0% |
| AGAAACAATTGCAGAGAAAA+AGG | - | chr1_3:41474672-41474691 | None:intergenic | 30.0% | |
| TTGTAATGTACCGTTCAAAA+CGG | - | chr1_3:41474771-41474790 | None:intergenic | 30.0% | |
| !!! | TACAATTTGTTTTGCTCAAC+AGG | - | chr1_3:41474907-41474926 | None:intergenic | 30.0% |
| AGGATTGAAAATGAGAAAGA+AGG | + | chr1_3:41475121-41475140 | Msa0118600:CDS | 30.0% | |
| ATTGAAAATGAGAAAGAAGG+AGG | + | chr1_3:41475124-41475143 | Msa0118600:CDS | 30.0% | |
| GAATTTATTGAGTCAGGTTT+CGG | + | chr1_3:41475432-41475451 | Msa0118600:CDS | 30.0% | |
| AATTTATTGAGTCAGGTTTC+GGG | + | chr1_3:41475433-41475452 | Msa0118600:CDS | 30.0% | |
| ! | AGATGGAAATGAATGGTTTT+TGG | + | chr1_3:41475506-41475525 | Msa0118600:CDS | 30.0% |
| TTCGTCTTTGTTAACAAAAC+TGG | - | chr1_3:41475608-41475627 | None:intergenic | 30.0% | |
| AGAACGAATAATAACAGATG+TGG | - | chr1_3:41476079-41476098 | None:intergenic | 30.0% | |
| TCTGTTATTATTCGTTCTAG+CGG | + | chr1_3:41476081-41476100 | Msa0118600:intron | 30.0% | |
| ! | GATAAAATTTTAAACGCGCA+GGG | - | chr1_3:41476129-41476148 | None:intergenic | 30.0% |
| ! | TGATAAAATTTTAAACGCGC+AGG | - | chr1_3:41476130-41476149 | None:intergenic | 30.0% |
| TGAGCCTTAAAAACTTCTAA+TGG | - | chr1_3:41476246-41476265 | None:intergenic | 30.0% | |
| GCTAGTATAGAATACGATAA+AGG | + | chr1_3:41476424-41476443 | Msa0118600:intron | 30.0% | |
| GTATAGAATACGATAAAGGA+AGG | + | chr1_3:41476428-41476447 | Msa0118600:intron | 30.0% | |
| TATTGGCAGATAAGAAAAAG+TGG | + | chr1_3:41476533-41476552 | Msa0118600:intron | 30.0% | |
| TTTAAACCTTGGTATGGTTA+CGG | - | chr1_3:41476775-41476794 | None:intergenic | 30.0% | |
| ! | GAAACTGAAAATAGTTTGCA+AGG | - | chr1_3:41476926-41476945 | None:intergenic | 30.0% |
| ! | GGTAGCTTTTATAGATATCT+AGG | + | chr1_3:41477097-41477116 | Msa0118600:intron | 30.0% |
| AAATTATCCAATCCCAAATC+AGG | + | chr1_3:41477120-41477139 | Msa0118600:intron | 30.0% | |
| ! | ATGAAGAGAGAATATGGTTT+TGG | - | chr1_3:41477160-41477179 | None:intergenic | 30.0% |
| TCAATGGCATCATCATTAAT+AGG | + | chr1_3:41477179-41477198 | Msa0118600:intron | 30.0% | |
| TCATTAATAGGACTAATAGG+AGG | + | chr1_3:41477191-41477210 | Msa0118600:intron | 30.0% | |
| TTTATGTGATGGCTAATTCA+AGG | - | chr1_3:41477385-41477404 | None:intergenic | 30.0% | |
| ATTCTATTCGATAAAATCCC+AGG | - | chr1_3:41477492-41477511 | None:intergenic | 30.0% | |
| ! | GGAATTGAAGTATCTTTGAA+AGG | - | chr1_3:41477545-41477564 | None:intergenic | 30.0% |
| AATAAATGGAGAATGCCATT+TGG | + | chr1_3:41477725-41477744 | Msa0118600:intron | 30.0% | |
| ATACACACAAAAAAAGGATG+TGG | + | chr1_3:41477750-41477769 | Msa0118600:intron | 30.0% | |
| TACACACAAAAAAAGGATGT+GGG | + | chr1_3:41477751-41477770 | Msa0118600:intron | 30.0% | |
| AACCACCTAAATCTTATGAA+AGG | + | chr1_3:41478006-41478025 | Msa0118600:intron | 30.0% | |
| AACCTTTCATAAGATTTAGG+TGG | - | chr1_3:41478011-41478030 | None:intergenic | 30.0% | |
| !! | CGTAATGTTTTGAATTTTGG+TGG | - | chr1_3:41478061-41478080 | None:intergenic | 30.0% |
| GAAAAGAACTGATAATTCCA+AGG | + | chr1_3:41478154-41478173 | Msa0118600:intron | 30.0% | |
| GAGAGAAAACTGAAGTTATT+AGG | + | chr1_3:41478211-41478230 | Msa0118600:intron | 30.0% | |
| CTTCACGTAAAATGAAATAG+CGG | + | chr1_3:41478293-41478312 | Msa0118600:intron | 30.0% | |
| AAGAGATAAAGACGCATAAA+AGG | - | chr1_3:41478501-41478520 | None:intergenic | 30.0% | |
| CAAATGGAGAAAGACATAAT+TGG | + | chr1_3:41478521-41478540 | Msa0118600:intron | 30.0% | |
| GAAAAAACTGAACTATTTGG+TGG | - | chr1_3:41478565-41478584 | None:intergenic | 30.0% | |
| TTTATCCTGTCTTTCATCAA+TGG | + | chr1_3:41478720-41478739 | Msa0118600:intron | 30.0% | |
| TTCTTAGTTACAGTCTCATA+TGG | - | chr1_3:41478750-41478769 | None:intergenic | 30.0% | |
| ATATGAGACTGTAACTAAGA+AGG | + | chr1_3:41478749-41478768 | Msa0118600:intron | 30.0% | |
| TATGAGACTGTAACTAAGAA+GGG | + | chr1_3:41478750-41478769 | Msa0118600:intron | 30.0% | |
| AACCCCCAAAAAAAAATGTA+AGG | + | chr1_3:41478812-41478831 | Msa0118600:intron | 30.0% | |
| TCAAAAGAGAAGATTTGATC+AGG | - | chr1_3:41478863-41478882 | None:intergenic | 30.0% | |
| TATAGTGGTGAAAAATGTTG+TGG | - | chr1_3:41479005-41479024 | None:intergenic | 30.0% | |
| ATCAAGTACTCAATTTCTGT+TGG | + | chr1_3:41479392-41479411 | Msa0118600:intron | 30.0% | |
| AGTCATACGCTAATACATAA+AGG | - | chr1_3:41479422-41479441 | None:intergenic | 30.0% | |
| CATTGATGAAGAATAAACTG+AGG | - | chr1_3:41480156-41480175 | None:intergenic | 30.0% | |
| CTCAGTTTATTCTTCATCAA+TGG | + | chr1_3:41480154-41480173 | Msa0118600:three_prime_UTR | 30.0% | |
| GCATCATCATTAATAGAACA+AGG | + | chr1_3:41480176-41480195 | Msa0118600:three_prime_UTR | 30.0% | |
| ! | AAGAAAGCGCAGCTAAATTT+AGG | - | chr1_3:41474547-41474566 | None:intergenic | 35.0% |
| ACAATTGCAGAGAAAAAGGA+AGG | - | chr1_3:41474668-41474687 | None:intergenic | 35.0% | |
| !! | TTGGTAGGTTTTATCAAGCA+TGG | + | chr1_3:41475063-41475082 | Msa0118600:intron | 35.0% |
| TGCAAATCACAATGGAACAT+TGG | - | chr1_3:41475151-41475170 | None:intergenic | 35.0% | |
| ! | CCATTGTGATTTGCATGATA+CGG | + | chr1_3:41475156-41475175 | Msa0118600:CDS | 35.0% |
| ! | ACGATTTTGTAGATTCGAAG+AGG | + | chr1_3:41475410-41475429 | Msa0118600:CDS | 35.0% |
| GAAGAGGAATTTATTGAGTC+AGG | + | chr1_3:41475426-41475445 | Msa0118600:CDS | 35.0% | |
| ! | AGATGATTTTGTTCAGGAGA+TGG | + | chr1_3:41475489-41475508 | Msa0118600:CDS | 35.0% |
| TAAAAGGACAATGTGAATCG+TGG | - | chr1_3:41475723-41475742 | None:intergenic | 35.0% | |
| CACTTAATGCACTTGCTTAA+AGG | + | chr1_3:41475919-41475938 | Msa0118600:CDS | 35.0% | |
| AAGAGTAGAACAGATTGTAC+AGG | + | chr1_3:41475978-41475997 | Msa0118600:CDS | 35.0% | |
| GAATGTAAGCAGAAAGATGT+TGG | - | chr1_3:41476200-41476219 | None:intergenic | 35.0% | |
| GAATACGATAAAGGAAGGAT+TGG | + | chr1_3:41476433-41476452 | Msa0118600:intron | 35.0% | |
| CAACAACATTTACTAGACTC+TGG | - | chr1_3:41476582-41476601 | None:intergenic | 35.0% | |
| GAGTCTAGTAAATGTTGTTG+TGG | + | chr1_3:41476582-41476601 | Msa0118600:intron | 35.0% | |
| GATGATGACTATCCTGATTT+GGG | - | chr1_3:41477135-41477154 | None:intergenic | 35.0% | |
| ! | TGATGATGACTATCCTGATT+TGG | - | chr1_3:41477136-41477155 | None:intergenic | 35.0% |
| CCATTGATGAAGAGAGAATA+TGG | - | chr1_3:41477166-41477185 | None:intergenic | 35.0% | |
| CCATATTCTCTCTTCATCAA+TGG | + | chr1_3:41477163-41477182 | Msa0118600:intron | 35.0% | |
| GAAGACATCTTACTTGATGT+TGG | - | chr1_3:41477263-41477282 | None:intergenic | 35.0% | |
| TTAAGATGCAGATCCAGAAT+TGG | - | chr1_3:41477619-41477638 | None:intergenic | 35.0% | |
| CTATCCGCTATTAACTACTA+TGG | - | chr1_3:41477799-41477818 | None:intergenic | 35.0% | |
| !! | TAGTAGTTAATAGCGGATAG+CGG | + | chr1_3:41477799-41477818 | Msa0118600:intron | 35.0% |
| !!! | ATCCCGCTATAGCATTTTTT+GGG | - | chr1_3:41477839-41477858 | None:intergenic | 35.0% |
| !!! | TATCCCGCTATAGCATTTTT+TGG | - | chr1_3:41477840-41477859 | None:intergenic | 35.0% |
| GATAATTCCAAGGAGATGAA+AGG | + | chr1_3:41478164-41478183 | Msa0118600:intron | 35.0% | |
| CTTCCTTCTTTCATTCTCTA+CGG | - | chr1_3:41478192-41478211 | None:intergenic | 35.0% | |
| TGAAGATACAAGATTCTCCT+TGG | - | chr1_3:41478278-41478297 | None:intergenic | 35.0% | |
| AAAACAACTATGCAGTGTTG+CGG | + | chr1_3:41478327-41478346 | Msa0118600:intron | 35.0% | |
| TGCGTCTTTATCTCTTCAAA+TGG | + | chr1_3:41478505-41478524 | Msa0118600:intron | 35.0% | |
| TCATTATCATACATGCTCTC+TGG | + | chr1_3:41478610-41478629 | Msa0118600:intron | 35.0% | |
| TCATTATCAACAGTGAATCC+AGG | + | chr1_3:41478637-41478656 | Msa0118600:intron | 35.0% | |
| CATTATCAACAGTGAATCCA+GGG | + | chr1_3:41478638-41478657 | Msa0118600:intron | 35.0% | |
| ATTATCAACAGTGAATCCAG+GGG | + | chr1_3:41478639-41478658 | Msa0118600:intron | 35.0% | |
| GAAAACCATTGATGAAAGAC+AGG | - | chr1_3:41478728-41478747 | None:intergenic | 35.0% | |
| ATGAGACTGTAACTAAGAAG+GGG | + | chr1_3:41478751-41478770 | Msa0118600:intron | 35.0% | |
| AGATTTGATCAGGCTTCAAT+GGG | - | chr1_3:41478853-41478872 | None:intergenic | 35.0% | |
| AAGATTTGATCAGGCTTCAA+TGG | - | chr1_3:41478854-41478873 | None:intergenic | 35.0% | |
| AGCGTTCATTTATGAAGAGA+TGG | - | chr1_3:41478891-41478910 | None:intergenic | 35.0% | |
| !! | ATTGTTGTACATGGTGGATT+TGG | - | chr1_3:41478930-41478949 | None:intergenic | 35.0% |
| AATGTTGTGAATTGCATGAG+TGG | - | chr1_3:41478971-41478990 | None:intergenic | 35.0% | |
| TGAAAAATGTTGTGGAGTTC+AGG | - | chr1_3:41478997-41479016 | None:intergenic | 35.0% | |
| CTTCTCATCATGCATTATAG+TGG | - | chr1_3:41479020-41479039 | None:intergenic | 35.0% | |
| !! | GTTGTTCATCAATTTGTTGC+TGG | + | chr1_3:41479110-41479129 | Msa0118600:intron | 35.0% |
| ACAAGATTTCTGCTTCAGAT+TGG | + | chr1_3:41479345-41479364 | Msa0118600:intron | 35.0% | |
| TACAGGCATCAACAAACAAT+AGG | + | chr1_3:41479607-41479626 | Msa0118600:intron | 35.0% | |
| ! | TCTATGAGATTGACTTCCAA+AGG | - | chr1_3:41479699-41479718 | None:intergenic | 35.0% |
| GCTGTGAATAATGAAGAAGT+TGG | + | chr1_3:41479858-41479877 | Msa0118600:three_prime_UTR | 35.0% | |
| GCAGAAATATGTTTGTTTGG+TGG | - | chr1_3:41479901-41479920 | None:intergenic | 35.0% | |
| !! | GAACTTCTAAGTTCTAAGTG+AGG | + | chr1_3:41479986-41480005 | Msa0118600:three_prime_UTR | 35.0% |
| AAAAAAGGTCTGAGAGAAGT+TGG | + | chr1_3:41480042-41480061 | Msa0118600:three_prime_UTR | 35.0% | |
| AACTAATCCAAACTGAGCTA+AGG | - | chr1_3:41480079-41480098 | None:intergenic | 35.0% | |
| TGAAGAATAAACTGAGGTTG+AGG | - | chr1_3:41480150-41480169 | None:intergenic | 35.0% | |
| ! | CTTGCTATAGTATTTGACGT+TGG | - | chr1_3:41480243-41480262 | None:intergenic | 35.0% |
| GAGGAGAATGTTCGTTCAAA+AGG | - | chr1_3:41474509-41474528 | None:intergenic | 40.0% | |
| ATTTAGGAGAGGAATCAGAG+TGG | - | chr1_3:41474531-41474550 | None:intergenic | 40.0% | |
| TTGCAGAGAAAAAGGAAGGA+AGG | - | chr1_3:41474664-41474683 | None:intergenic | 40.0% | |
| !! | TCTTCGGATTCCGTTTTGAA+CGG | + | chr1_3:41474758-41474777 | Msa0118600:intron | 40.0% |
| ! | TTCTCATTTTCAATCCTCGC+AGG | - | chr1_3:41475118-41475137 | None:intergenic | 40.0% |
| CCGTATCATGCAAATCACAA+TGG | - | chr1_3:41475159-41475178 | None:intergenic | 40.0% | |
| TACGGAAGTAGTTCACAAGT+TGG | + | chr1_3:41475174-41475193 | Msa0118600:CDS | 40.0% | |
| !! | GCTTGTGTTGATAACACAAC+TGG | + | chr1_3:41475226-41475245 | Msa0118600:CDS | 40.0% |
| TGTTGCTGAGACTGTTATCT+TGG | + | chr1_3:41475327-41475346 | Msa0118600:CDS | 40.0% | |
| GAGACTGTTATCTTGGATGA+TGG | + | chr1_3:41475334-41475353 | Msa0118600:CDS | 40.0% | |
| ! | TGTTATCTTGGATGATGGTG+CGG | + | chr1_3:41475339-41475358 | Msa0118600:CDS | 40.0% |
| GTTCAGGAGATGGAAATGAA+TGG | + | chr1_3:41475499-41475518 | Msa0118600:CDS | 40.0% | |
| !! | AGTGTACAGATAGCCTTATG+AGG | + | chr1_3:41475764-41475783 | Msa0118600:CDS | 40.0% |
| GACAACCAACAGCATAGAAA+GGG | - | chr1_3:41475843-41475862 | None:intergenic | 40.0% | |
| TCTTCGATTAAGATCTCCAC+CGG | - | chr1_3:41475962-41475981 | None:intergenic | 40.0% | |
| GTAAGCAGAAAGATGTTGGA+TGG | - | chr1_3:41476196-41476215 | None:intergenic | 40.0% | |
| ! | AAAAAAGGTACGGGTACGTT+AGG | + | chr1_3:41476347-41476366 | Msa0118600:intron | 40.0% |
| ! | TACGGGTACGTTTTGCAAAT+TGG | + | chr1_3:41476870-41476889 | Msa0118600:intron | 40.0% |
| !! | ATTTGACAACCTCTGAAGCA+CGG | - | chr1_3:41476901-41476920 | None:intergenic | 40.0% |
| TTAGTGACTAAGACCTCTTG+TGG | + | chr1_3:41476956-41476975 | Msa0118600:intron | 40.0% | |
| TAGTGACTAAGACCTCTTGT+GGG | + | chr1_3:41476957-41476976 | Msa0118600:intron | 40.0% | |
| TTACAGAGTCTATGCCTCTT+CGG | - | chr1_3:41477028-41477047 | None:intergenic | 40.0% | |
| AACTAATCCTAACTGAGCTC+AGG | - | chr1_3:41477067-41477086 | None:intergenic | 40.0% | |
| !! | TGACTATCCTGATTTGGGAT+TGG | - | chr1_3:41477130-41477149 | None:intergenic | 40.0% |
| !! | TAGTGTTGTTGGTGACAGTT+TGG | - | chr1_3:41477222-41477241 | None:intergenic | 40.0% |
| !! | TGAATGGGTTGAGAATGTAG+AGG | - | chr1_3:41477303-41477322 | None:intergenic | 40.0% |
| TCAACCCATTCATCTCAGAA+CGG | + | chr1_3:41477311-41477330 | Msa0118600:intron | 40.0% | |
| !! | AGATCCGTTCTGAGATGAAT+GGG | - | chr1_3:41477318-41477337 | None:intergenic | 40.0% |
| !! | AAGATCCGTTCTGAGATGAA+TGG | - | chr1_3:41477319-41477338 | None:intergenic | 40.0% |
| TCAAGGTTGGGCAAAAAAGA+AGG | - | chr1_3:41477368-41477387 | None:intergenic | 40.0% | |
| GTGATGGCTAATTCAAGGTT+GGG | - | chr1_3:41477380-41477399 | None:intergenic | 40.0% | |
| TGTGATGGCTAATTCAAGGT+TGG | - | chr1_3:41477381-41477400 | None:intergenic | 40.0% | |
| ACTTCAATTCCACTCACAAC+CGG | + | chr1_3:41477554-41477573 | Msa0118600:intron | 40.0% | |
| ATGAAAGGAGATCCTTACTC+TGG | - | chr1_3:41477702-41477721 | None:intergenic | 40.0% | |
| CCGCTATTAACTACTATGGT+GGG | - | chr1_3:41477795-41477814 | None:intergenic | 40.0% | |
| CCCACCATAGTAGTTAATAG+CGG | + | chr1_3:41477792-41477811 | Msa0118600:intron | 40.0% | |
| TCCGCTATTAACTACTATGG+TGG | - | chr1_3:41477796-41477815 | None:intergenic | 40.0% | |
| CGACCCAAAAAATGCTATAG+CGG | + | chr1_3:41477833-41477852 | Msa0118600:intron | 40.0% | |
| GACCCAAAAAATGCTATAGC+GGG | + | chr1_3:41477834-41477853 | Msa0118600:intron | 40.0% | |
| GGAGAAAGACATAATTGGAG+AGG | + | chr1_3:41478526-41478545 | Msa0118600:intron | 40.0% | |
| GCAAGATGGGGTTAAAGTAA+AGG | + | chr1_3:41478668-41478687 | Msa0118600:intron | 40.0% | |
| ATGCAACATGCAATGACCTA+CGG | + | chr1_3:41478692-41478711 | Msa0118600:intron | 40.0% | |
| GATTTGATCAGGCTTCAATG+GGG | - | chr1_3:41478852-41478871 | None:intergenic | 40.0% | |
| TCATAAATGAACGCTGTGAC+TGG | + | chr1_3:41478896-41478915 | Msa0118600:intron | 40.0% | |
| TTTAGACACTAATGAGGCTG+TGG | + | chr1_3:41479238-41479257 | Msa0118600:intron | 40.0% | |
| AGGCTGTGGCATATATATTG+TGG | + | chr1_3:41479252-41479271 | Msa0118600:intron | 40.0% | |
| TGAGTACTTGATTGAAGCAG+AGG | - | chr1_3:41479384-41479403 | None:intergenic | 40.0% | |
| AGAGATCTTGAAGCTAAGCT+AGG | + | chr1_3:41479672-41479691 | Msa0118600:CDS | 40.0% | |
| GAGATCTTGAAGCTAAGCTA+GGG | + | chr1_3:41479673-41479692 | Msa0118600:CDS | 40.0% | |
| GTCTTCACTGTCTTCATTCT+TGG | - | chr1_3:41479745-41479764 | None:intergenic | 40.0% | |
| AATGAAGACAGTGAAGACAC+AGG | + | chr1_3:41479747-41479766 | Msa0118600:CDS | 40.0% | |
| ! | ATGAAGATGCATGTTGGTGA+CGG | - | chr1_3:41480215-41480234 | None:intergenic | 40.0% |
| GAGAAGATGAAGATGCATGT+TGG | - | chr1_3:41480221-41480240 | None:intergenic | 40.0% | |
| TTTAGAGACGGACGGAGTAT+TGG | + | chr1_3:41474472-41474491 | Msa0118600:five_prime_UTR | 45.0% | |
| AGCGCAGCTAAATTTAGGAG+AGG | - | chr1_3:41474542-41474561 | None:intergenic | 45.0% | |
| CATCACATCACAACCCATGT+CGG | + | chr1_3:41474628-41474647 | Msa0118600:exon | 45.0% | |
| AGGAAGAAACTCACCGACAT+GGG | - | chr1_3:41474644-41474663 | None:intergenic | 45.0% | |
| AAGGAAGAAACTCACCGACA+TGG | - | chr1_3:41474645-41474664 | None:intergenic | 45.0% | |
| ! | GTTGGCTCAAATGTTTCTGC+CGG | + | chr1_3:41475192-41475211 | Msa0118600:CDS | 45.0% |
| ! | TTGGCTCAAATGTTTCTGCC+GGG | + | chr1_3:41475193-41475212 | Msa0118600:CDS | 45.0% |
| TATTGAGTCAGGTTTCGGGA+TGG | + | chr1_3:41475437-41475456 | Msa0118600:CDS | 45.0% | |
| ATCTGTGACCTGCGATAATG+AGG | + | chr1_3:41475660-41475679 | Msa0118600:CDS | 45.0% | |
| TCTGTGACCTGCGATAATGA+GGG | + | chr1_3:41475661-41475680 | Msa0118600:CDS | 45.0% | |
| ATTGCATCCCTCATTATCGC+AGG | - | chr1_3:41475671-41475690 | None:intergenic | 45.0% | |
| ATAATGAGGGATGCAATGCG+AGG | + | chr1_3:41475674-41475693 | Msa0118600:CDS | 45.0% | |
| GTTTAGCGCGGTTCATTTGA+AGG | + | chr1_3:41475696-41475715 | Msa0118600:CDS | 45.0% | |
| TCTGTACACTTCTGCTCACA+TGG | - | chr1_3:41475754-41475773 | None:intergenic | 45.0% | |
| !! | TAGCCTTATGAGGCGTGATA+TGG | + | chr1_3:41475774-41475793 | Msa0118600:CDS | 45.0% |
| TGTCCATATCACGCCTCATA+AGG | - | chr1_3:41475780-41475799 | None:intergenic | 45.0% | |
| TTATGAGGCGTGATATGGAC+AGG | + | chr1_3:41475779-41475798 | Msa0118600:CDS | 45.0% | |
| AACTGCCCTTTCTATGCTGT+TGG | + | chr1_3:41475835-41475854 | Msa0118600:CDS | 45.0% | |
| CGACAACCAACAGCATAGAA+AGG | - | chr1_3:41475844-41475863 | None:intergenic | 45.0% | |
| ! | CTATGCTGTTGGTTGTCGAT+CGG | + | chr1_3:41475846-41475865 | Msa0118600:CDS | 45.0% |
| ATCGGCTATTGCGCAATGTA+TGG | + | chr1_3:41475864-41475883 | Msa0118600:CDS | 45.0% | |
| GCTATTGCGCAATGTATGGT+TGG | + | chr1_3:41475868-41475887 | Msa0118600:CDS | 45.0% | |
| !! | CTTGCTTAAAGGCATCCACA+AGG | + | chr1_3:41475930-41475949 | Msa0118600:CDS | 45.0% |
| GAGTTGTCAACTGTGTTGCA+CGG | + | chr1_3:41476289-41476308 | Msa0118600:intron | 45.0% | |
| AGTTGTCAACTGTGTTGCAC+GGG | + | chr1_3:41476290-41476309 | Msa0118600:intron | 45.0% | |
| TTGGTATGGTTACGGTATGG+TGG | - | chr1_3:41476767-41476786 | None:intergenic | 45.0% | |
| ACCATACCGTAACCATACCA+AGG | + | chr1_3:41476766-41476785 | Msa0118600:intron | 45.0% | |
| ACCTTGGTATGGTTACGGTA+TGG | - | chr1_3:41476770-41476789 | None:intergenic | 45.0% | |
| !! | TTTGACAACCTCTGAAGCAC+GGG | - | chr1_3:41476900-41476919 | None:intergenic | 45.0% |
| AGTGACTAAGACCTCTTGTG+GGG | + | chr1_3:41476958-41476977 | Msa0118600:intron | 45.0% | |
| ACTATATGTCCAGCTTTGCC+AGG | - | chr1_3:41477005-41477024 | None:intergenic | 45.0% | |
| GAGGCATAGACTCTGTAAGA+CGG | + | chr1_3:41477030-41477049 | Msa0118600:intron | 45.0% | |
| TCACCAACAACACTAACACC+AGG | + | chr1_3:41477227-41477246 | Msa0118600:intron | 45.0% | |
| CACCAACAACACTAACACCA+GGG | + | chr1_3:41477228-41477247 | Msa0118600:intron | 45.0% | |
| ACCAACAACACTAACACCAG+GGG | + | chr1_3:41477229-41477248 | Msa0118600:intron | 45.0% | |
| GGGCAAAAAAGAAGGAAGCT+AGG | - | chr1_3:41477360-41477379 | None:intergenic | 45.0% | |
| ATGCAGATCCAGAATTGGAG+TGG | - | chr1_3:41477614-41477633 | None:intergenic | 45.0% | |
| AAAGGAGATCCTTACTCTGG+TGG | - | chr1_3:41477699-41477718 | None:intergenic | 45.0% | |
| TATCTCATAACGCTACGCCA+TGG | + | chr1_3:41478365-41478384 | Msa0118600:intron | 45.0% | |
| AGTTAATAGCGGCGCTATAG+CGG | - | chr1_3:41478441-41478460 | None:intergenic | 45.0% | |
| GGACCCAGAGTAGTTAATAG+CGG | - | chr1_3:41478452-41478471 | None:intergenic | 45.0% | |
| TGCTGGATTGACATGCATTC+TGG | + | chr1_3:41479127-41479146 | Msa0118600:intron | 45.0% | |
| !! | GCATTCTGGAGTTCATACAC+TGG | + | chr1_3:41479141-41479160 | Msa0118600:intron | 45.0% |
| AAACTGAGCTAAGGCTCAAG+TGG | - | chr1_3:41480070-41480089 | None:intergenic | 45.0% | |
| ACTTGAGCCTTAGCTCAGTT+TGG | + | chr1_3:41480069-41480088 | Msa0118600:three_prime_UTR | 45.0% | |
| !!! | TTTTTATTTATAAAATTTGT+TGG | + | chr1_3:41475044-41475063 | Msa0118600:intron | 5.0% |
| !!! | TTTTTTAATTTAAAATAACA+TGG | + | chr1_3:41476380-41476399 | Msa0118600:intron | 5.0% |
| !! | AAAAAAAAAAAAATTAATGA+TGG | - | chr1_3:41478477-41478496 | None:intergenic | 5.0% |
| !! | GACGGACGGAGTATTGGTTA+TGG | + | chr1_3:41474478-41474497 | Msa0118600:five_prime_UTR | 50.0% |
| TAGGAGAGGAATCAGAGTGG+AGG | - | chr1_3:41474528-41474547 | None:intergenic | 50.0% | |
| GAAAGATCCACGTCAACGGT+TGG | - | chr1_3:41475094-41475113 | None:intergenic | 50.0% | |
| AGGCGAAAGATCCACGTCAA+CGG | - | chr1_3:41475098-41475117 | None:intergenic | 50.0% | |
| ACACAAGCAGAAGCTAGACC+CGG | - | chr1_3:41475214-41475233 | None:intergenic | 50.0% | |
| ! | ACAACTGGCTTCAACACACC+TGG | + | chr1_3:41475241-41475260 | Msa0118600:CDS | 50.0% |
| CAACACACCTGGTTCAGTTG+CGG | + | chr1_3:41475252-41475271 | Msa0118600:CDS | 50.0% | |
| AAACCATCCGCAACTGAACC+AGG | - | chr1_3:41475262-41475281 | None:intergenic | 50.0% | |
| GTTCAGTTGCGGATGGTTTG+AGG | + | chr1_3:41475263-41475282 | Msa0118600:CDS | 50.0% | |
| AGTTGCGGATGGTTTGAGGA+AGG | + | chr1_3:41475267-41475286 | Msa0118600:CDS | 50.0% | |
| ! | ATCTTGGATGATGGTGCGGA+TGG | + | chr1_3:41475343-41475362 | Msa0118600:CDS | 50.0% |
| ATGCAATGCGAGGTTTAGCG+CGG | + | chr1_3:41475684-41475703 | Msa0118600:CDS | 50.0% | |
| GGGCAGTTCACAAGCTTCAT+CGG | - | chr1_3:41475823-41475842 | None:intergenic | 50.0% | |
| !! | GTATGGTGGTGGTACTCTCA+GGG | - | chr1_3:41476753-41476772 | None:intergenic | 50.0% |
| GTATGGTTACGGTATGGTGG+TGG | - | chr1_3:41476764-41476783 | None:intergenic | 50.0% | |
| CATACGAGTACCAGTACCTG+CGG | + | chr1_3:41476838-41476857 | Msa0118600:intron | 50.0% | |
| TTGCAAAACGTACCCGTACC+AGG | - | chr1_3:41476868-41476887 | None:intergenic | 50.0% | |
| TAAGACCTCTTGTGGGGATG+TGG | + | chr1_3:41476964-41476983 | Msa0118600:intron | 50.0% | |
| !! | TGGAGGGTTGGTCAAATTCC+TGG | + | chr1_3:41476984-41477003 | Msa0118600:intron | 50.0% |
| GGTCAAATTCCTGGCAAAGC+TGG | + | chr1_3:41476993-41477012 | Msa0118600:intron | 50.0% | |
| GCTGGACATATAGTCCGAAG+AGG | + | chr1_3:41477011-41477030 | Msa0118600:intron | 50.0% | |
| TAACTGAGCTCAGGCTCAAG+TGG | - | chr1_3:41477058-41477077 | None:intergenic | 50.0% | |
| ACTTGAGCCTGAGCTCAGTT+AGG | + | chr1_3:41477057-41477076 | Msa0118600:intron | 50.0% | |
| GTAGTTCATCCGGTTGTGAG+TGG | - | chr1_3:41477566-41477585 | None:intergenic | 50.0% | |
| CACGTGAACCACTCCAATTC+TGG | + | chr1_3:41477603-41477622 | Msa0118600:intron | 50.0% | |
| ATGTGGGTCCTACCATTGAG+TGG | + | chr1_3:41477767-41477786 | Msa0118600:intron | 50.0% | |
| TGTGGGTCCTACCATTGAGT+GGG | + | chr1_3:41477768-41477787 | Msa0118600:intron | 50.0% | |
| GAAATAGCGGTCATAGCGCT+AGG | - | chr1_3:41477866-41477885 | None:intergenic | 50.0% | |
| GCGCCGTAGAGAATGAAAGA+AGG | + | chr1_3:41478186-41478205 | Msa0118600:intron | 50.0% | |
| ! | ATGAGATAGCGGCGCTATAG+CGG | - | chr1_3:41478353-41478372 | None:intergenic | 50.0% |
| GGCGTAGCGTTATGAGATAG+CGG | - | chr1_3:41478364-41478383 | None:intergenic | 50.0% | |
| CGCCATGGCTTATTGCATAG+CGG | + | chr1_3:41478380-41478399 | Msa0118600:intron | 50.0% | |
| GACCGCTATGCAATAAGCCA+TGG | - | chr1_3:41478385-41478404 | None:intergenic | 50.0% | |
| TGGCTTATTGCATAGCGGTC+CGG | + | chr1_3:41478385-41478404 | Msa0118600:intron | 50.0% | |
| AGCGCCGCTATTAACTACTC+TGG | + | chr1_3:41478445-41478464 | Msa0118600:intron | 50.0% | |
| GCGCCGCTATTAACTACTCT+GGG | + | chr1_3:41478446-41478465 | Msa0118600:intron | 50.0% | |
| ! | TCCAGGGGCATAATGCAAGA+TGG | + | chr1_3:41478654-41478673 | Msa0118600:intron | 50.0% |
| ! | CCAGGGGCATAATGCAAGAT+GGG | + | chr1_3:41478655-41478674 | Msa0118600:intron | 50.0% |
| ! | CAGGGGCATAATGCAAGATG+GGG | + | chr1_3:41478656-41478675 | Msa0118600:intron | 50.0% |
| GCTTCAATGGGGTCGATAGA+CGG | - | chr1_3:41478841-41478860 | None:intergenic | 50.0% | |
| TGAAGCTAAGCTAGGGCCTT+TGG | + | chr1_3:41479680-41479699 | Msa0118600:CDS | 50.0% | |
| AGACAGTGAAGACACAGGCA+CGG | + | chr1_3:41479752-41479771 | Msa0118600:CDS | 50.0% | |
| AGACACAGGCACGGAAACAA+AGG | + | chr1_3:41479761-41479780 | Msa0118600:CDS | 50.0% | |
| GACACAGGCACGGAAACAAA+GGG | + | chr1_3:41479762-41479781 | Msa0118600:CDS | 50.0% | |
| !! | GATGCATGTTGGTGACGGTT+TGG | - | chr1_3:41480210-41480229 | None:intergenic | 50.0% |
| ACACCTGGTTCAGTTGCGGA+TGG | + | chr1_3:41475256-41475275 | Msa0118600:CDS | 55.0% | |
| ! | TTGGATGATGGTGCGGATGG+TGG | + | chr1_3:41475346-41475365 | Msa0118600:CDS | 55.0% |
| GGCATCCACAAGGATGCATC+CGG | + | chr1_3:41475940-41475959 | Msa0118600:CDS | 55.0% | |
| ATCCACAAGGATGCATCCGG+TGG | + | chr1_3:41475943-41475962 | Msa0118600:CDS | 55.0% | |
| TCAACTGTGTTGCACGGGTG+CGG | + | chr1_3:41476295-41476314 | Msa0118600:intron | 55.0% | |
| !! | GGTATGGTGGTGGTACTCTC+AGG | - | chr1_3:41476754-41476773 | None:intergenic | 55.0% |
| !! | CGCAGGTACTGGTACTCGTA+TGG | - | chr1_3:41476840-41476859 | None:intergenic | 55.0% |
| ! | TACCTGCGGAGTACCTGGTA+CGG | + | chr1_3:41476852-41476871 | Msa0118600:intron | 55.0% |
| ! | TTGGAGTACCCGTGCTTCAG+AGG | + | chr1_3:41476889-41476908 | Msa0118600:intron | 55.0% |
| ACCTCTTGTGGGGATGTGGA+GGG | + | chr1_3:41476968-41476987 | Msa0118600:intron | 55.0% | |
| ! | GCCCCTGGTGTTAGTGTTGT+TGG | - | chr1_3:41477233-41477252 | None:intergenic | 55.0% |
| GATGTTGGAGAAGATGCCCC+TGG | - | chr1_3:41477248-41477267 | None:intergenic | 55.0% | |
| GCAAGCTGACCACCAGAGTA+AGG | + | chr1_3:41477687-41477706 | Msa0118600:intron | 55.0% | |
| ! | CTATGGTGGGACCCACTCAA+TGG | - | chr1_3:41477782-41477801 | None:intergenic | 55.0% |
| TACGGCGCCTTTCATCTCCT+TGG | - | chr1_3:41478174-41478193 | None:intergenic | 55.0% | |
| CCCATCTTGCATTATGCCCC+TGG | - | chr1_3:41478658-41478677 | None:intergenic | 55.0% | |
| GACAGGATAAACAGCGCCGT+AGG | - | chr1_3:41478711-41478730 | None:intergenic | 55.0% | |
| ACGTGGATCTTTCGCCTGCG+AGG | + | chr1_3:41475101-41475120 | Msa0118600:CDS | 60.0% | |
| CTCCACCGGATGCATCCTTG+TGG | - | chr1_3:41475948-41475967 | None:intergenic | 60.0% | |
| CAACTGTGTTGCACGGGTGC+GGG | + | chr1_3:41476296-41476315 | Msa0118600:intron | 60.0% | |
| ! | ACCAGTACCTGCGGAGTACC+TGG | + | chr1_3:41476847-41476866 | Msa0118600:intron | 60.0% |
| ACCAGGTACTCCGCAGGTAC+TGG | - | chr1_3:41476851-41476870 | None:intergenic | 60.0% | |
| ! | ACCTGCGGAGTACCTGGTAC+GGG | + | chr1_3:41476853-41476872 | Msa0118600:intron | 60.0% |
| GACCTCTTGTGGGGATGTGG+AGG | + | chr1_3:41476967-41476986 | Msa0118600:intron | 60.0% | |
| ACCCTCCACATCCCCACAAG+AGG | - | chr1_3:41476972-41476991 | None:intergenic | 60.0% | |
| CTTGTGGGGATGTGGAGGGT+TGG | + | chr1_3:41476972-41476991 | Msa0118600:intron | 60.0% | |
| GGTGGGACCCACTCAATGGT+AGG | - | chr1_3:41477778-41477797 | None:intergenic | 60.0% | |
| !! | GGAAGCGCCAACCGTTGACG+TGG | + | chr1_3:41475084-41475103 | Msa0118600:CDS | 65.0% |
| GTGTTGCACGGGTGCGGGTA+CGG | + | chr1_3:41476301-41476320 | Msa0118600:intron | 65.0% | |
| TGTTGCACGGGTGCGGGTAC+GGG | + | chr1_3:41476302-41476321 | Msa0118600:intron | 65.0% | |
| ACGGGTGCGGGTACGGGATA+CGG | + | chr1_3:41476308-41476327 | Msa0118600:intron | 65.0% | |
| ACCCGTACCAGGTACTCCGC+AGG | - | chr1_3:41476857-41476876 | None:intergenic | 65.0% | |
| ! | TAGCGGATAGCGGCGCGTAG+CGG | + | chr1_3:41477809-41477828 | Msa0118600:intron | 65.0% |
| CCAATAGCAGCCGCGCGGTG+CGG | - | chr1_3:41478418-41478437 | None:intergenic | 70.0% | |
| AGCGGCCAATAGCAGCCGCG+CGG | - | chr1_3:41478423-41478442 | None:intergenic | 70.0% | |
| CCGCACCGCGCGGCTGCTAT+TGG | + | chr1_3:41478415-41478434 | Msa0118600:intron | 75.0% | |
| ! | CGCGCGGTGCGGTGCGGTAC+CGG | - | chr1_3:41478407-41478426 | None:intergenic | 80.0% |
| ! | CGGTACCGCACCGCACCGCG+CGG | + | chr1_3:41478405-41478424 | Msa0118600:intron | 80.0% |
| ! | AGCAGCCGCGCGGTGCGGTG+CGG | - | chr1_3:41478413-41478432 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 41474469 | 41480324 | 41474469 | ID=Msa0118600;Name=Msa0118600 |
| chr1_3 | mRNA | 41474469 | 41480324 | 41474469 | ID=Msa0118600-mRNA-1;Parent=Msa0118600;Name=Msa0118600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=175|1|1|1|0.5|0.33|3|470|392 |
| chr1_3 | exon | 41474469 | 41474649 | 41474469 | ID=Msa0118600-mRNA-1:exon:12583;Parent=Msa0118600-mRNA-1 |
| chr1_3 | exon | 41475070 | 41475999 | 41475070 | ID=Msa0118600-mRNA-1:exon:12584;Parent=Msa0118600-mRNA-1 |
| chr1_3 | exon | 41479612 | 41480324 | 41479612 | ID=Msa0118600-mRNA-1:exon:12585;Parent=Msa0118600-mRNA-1 |
| chr1_3 | five_prime_UTR | 41474469 | 41474643 | 41474469 | ID=Msa0118600-mRNA-1:five_prime_utr;Parent=Msa0118600-mRNA-1 |
| chr1_3 | CDS | 41474644 | 41474649 | 41474644 | ID=Msa0118600-mRNA-1:cds;Parent=Msa0118600-mRNA-1 |
| chr1_3 | CDS | 41475070 | 41475999 | 41475070 | ID=Msa0118600-mRNA-1:cds;Parent=Msa0118600-mRNA-1 |
| chr1_3 | CDS | 41479612 | 41479854 | 41479612 | ID=Msa0118600-mRNA-1:cds;Parent=Msa0118600-mRNA-1 |
| chr1_3 | three_prime_UTR | 41479855 | 41480324 | 41479855 | ID=Msa0118600-mRNA-1:three_prime_utr;Parent=Msa0118600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
