Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144380 | A0A072VJK6 | 99.231 | 390 | 3 | 0 | 1 | 390 | 1 | 390 | 0.0 | 801 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012220 | Msa0144380 | 0.807395 | 5.161779e-50 | -8.615850e-47 |
| Msa0118600 | Msa0144380 | 0.943190 | 1.879004e-102 | -8.615850e-47 |
| Msa0142110 | Msa0144380 | 0.808091 | 3.672724e-50 | -8.615850e-47 |
| Msa0144380 | Msa0167400 | 0.804054 | 2.596784e-49 | -8.615850e-47 |
| Msa0144380 | Msa0656810 | 0.815203 | 1.042676e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144380 | MtrunA17_Chr1g0176191 | 98.214 | 392 | 7 | 0 | 1 | 392 | 1 | 392 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144380 | AT3G11950.3 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.32e-154 | 448 |
| Msa0144380 | AT3G11950.5 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.32e-154 | 448 |
| Msa0144380 | AT3G11950.1 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.32e-154 | 448 |
| Msa0144380 | AT3G11950.2 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.32e-154 | 448 |
| Msa0144380 | AT3G11950.4 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.32e-154 | 448 |
Find 100 sgRNAs with CRISPR-Local
Find 379 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTAATGCACTTGCTTAA+AGG | 0.113512 | 1_4:+3847657 | Msa0144380:CDS |
| GTCTTCACTGTCTTCATTCT+TGG | 0.160455 | 1_4:-3851588 | None:intergenic |
| AACGATCATTGTTGATTGAT+TGG | 0.280810 | 1_4:-3846334 | None:intergenic |
| TCACATGGAATTATCTTAAA+AGG | 0.281351 | 1_4:-3847474 | None:intergenic |
| AATTTATTGAGTCAGGTTTC+GGG | 0.289208 | 1_4:+3847171 | Msa0144380:CDS |
| TTCGTCTTTGTTAACAAAAC+TGG | 0.295145 | 1_4:-3847343 | None:intergenic |
| GAATTTATTGAGTCAGGTTT+CGG | 0.295772 | 1_4:+3847170 | Msa0144380:CDS |
| AAGAAAGCGCAGCTAAATTT+AGG | 0.296268 | 1_4:-3846282 | None:intergenic |
| TAGCCTTATGAGGCGTGATA+TGG | 0.344694 | 1_4:+3847512 | Msa0144380:CDS |
| TGAAGCTAAGCTAGGGCCTT+TGG | 0.348568 | 1_4:+3851526 | Msa0144380:CDS |
| ACTTGAGCCTTAGCTCAGTT+TGG | 0.351932 | 1_4:+3851915 | Msa0144380:three_prime_UTR |
| CTCAGTTTATTCTTCATCAA+TGG | 0.382284 | 1_4:+3852000 | Msa0144380:three_prime_UTR |
| TGTTGCTGAGACTGTTATCT+TGG | 0.399244 | 1_4:+3847065 | Msa0144380:CDS |
| GTTTAGCGCGGTTCATTTGA+AGG | 0.406768 | 1_4:+3847434 | Msa0144380:CDS |
| GAAGAGGAATTTATTGAGTC+AGG | 0.419021 | 1_4:+3847164 | Msa0144380:CDS |
| ATCGGCTATTGCGCAATGTA+TGG | 0.422921 | 1_4:+3847602 | Msa0144380:CDS |
| AACTGCCCTTTCTATGCTGT+TGG | 0.425142 | 1_4:+3847573 | Msa0144380:CDS |
| TAAGCAGAAATATGTTTGTT+TGG | 0.426351 | 1_4:-3851747 | None:intergenic |
| TACAGGCATCAACAAACAAT+AGG | 0.435764 | 1_4:+3851453 | Msa0144380:intron |
| GCTTGTGTTGATAACACAAC+TGG | 0.444341 | 1_4:+3846964 | Msa0144380:CDS |
| CTATGCTGTTGGTTGTCGAT+CGG | 0.449296 | 1_4:+3847584 | Msa0144380:CDS |
| GACGGACGGAGTATTGGTTA+TGG | 0.450362 | 1_4:+3846216 | Msa0144380:five_prime_UTR |
| TGTCCATATCACGCCTCATA+AGG | 0.451239 | 1_4:-3847515 | None:intergenic |
| GATGCATGTTGGTGACGGTT+TGG | 0.466285 | 1_4:-3852053 | None:intergenic |
| GAGGAGAATGTTCGTTCAAA+AGG | 0.469261 | 1_4:-3846244 | None:intergenic |
| GTTCAGTTGCGGATGGTTTG+AGG | 0.469645 | 1_4:+3847001 | Msa0144380:CDS |
| GCAGAAATATGTTTGTTTGG+TGG | 0.472471 | 1_4:-3851744 | None:intergenic |
| ATCTGTGACCTGCGATAATG+AGG | 0.473160 | 1_4:+3847398 | Msa0144380:CDS |
| GTTGGCTCAAATGTTTCTGC+CGG | 0.479339 | 1_4:+3846930 | Msa0144380:CDS |
| AGGATTGAAAATGAGAAAGA+AGG | 0.492296 | 1_4:+3846859 | Msa0144380:CDS |
| TTTAGAGACGGACGGAGTAT+TGG | 0.495074 | 1_4:+3846210 | Msa0144380:five_prime_UTR |
| GTTCAGGAGATGGAAATGAA+TGG | 0.500637 | 1_4:+3847237 | Msa0144380:CDS |
| AAACTAGAAATAATATCAAA+AGG | 0.501827 | 1_4:-3847120 | None:intergenic |
| AGAGATCTTGAAGCTAAGCT+AGG | 0.503265 | 1_4:+3851518 | Msa0144380:CDS |
| TCTATGAGATTGACTTCCAA+AGG | 0.522809 | 1_4:-3851542 | None:intergenic |
| AATAATATCAAAAGGATGAT+CGG | 0.523155 | 1_4:-3847112 | None:intergenic |
| GACACAGGCACGGAAACAAA+GGG | 0.526060 | 1_4:+3851608 | Msa0144380:CDS |
| GGGCAGTTCACAAGCTTCAT+CGG | 0.528102 | 1_4:-3847558 | None:intergenic |
| CGACAACCAACAGCATAGAA+AGG | 0.528343 | 1_4:-3847579 | None:intergenic |
| AAACCATCCGCAACTGAACC+AGG | 0.528729 | 1_4:-3846997 | None:intergenic |
| TCTGTACACTTCTGCTCACA+TGG | 0.532465 | 1_4:-3847489 | None:intergenic |
| TTGGCTCAAATGTTTCTGCC+GGG | 0.539679 | 1_4:+3846931 | Msa0144380:CDS |
| CCATTGTGATTTGCATGATA+CGG | 0.541523 | 1_4:+3846894 | Msa0144380:CDS |
| GGCATCCACAAGGATGCATC+CGG | 0.542874 | 1_4:+3847678 | Msa0144380:CDS |
| TAGGAGAGGAATCAGAGTGG+AGG | 0.543116 | 1_4:-3846263 | None:intergenic |
| AACTAATCCAAACTGAGCTA+AGG | 0.548397 | 1_4:-3851922 | None:intergenic |
| TTATGAGGCGTGATATGGAC+AGG | 0.553179 | 1_4:+3847517 | Msa0144380:CDS |
| GACAACCAACAGCATAGAAA+GGG | 0.556536 | 1_4:-3847578 | None:intergenic |
| GCTATTGCGCAATGTATGGT+TGG | 0.558045 | 1_4:+3847606 | Msa0144380:CDS |
| CAACACACCTGGTTCAGTTG+CGG | 0.561259 | 1_4:+3846990 | Msa0144380:CDS |
| AAGAGTAGAACAGATTGTAC+AGG | 0.568687 | 1_4:+3847716 | Msa0144380:CDS |
| AGACACAGGCACGGAAACAA+AGG | 0.570576 | 1_4:+3851607 | Msa0144380:CDS |
| TGCAAATCACAATGGAACAT+TGG | 0.574064 | 1_4:-3846886 | None:intergenic |
| GAGACTGTTATCTTGGATGA+TGG | 0.574553 | 1_4:+3847072 | Msa0144380:CDS |
| TTGGATGATGGTGCGGATGG+TGG | 0.576679 | 1_4:+3847084 | Msa0144380:CDS |
| AAGGAAGAAACTCACCGACA+TGG | 0.577979 | 1_4:-3846380 | None:intergenic |
| GAAAGATCCACGTCAACGGT+TGG | 0.586244 | 1_4:-3846829 | None:intergenic |
| GGAAGCGCCAACCGTTGACG+TGG | 0.586376 | 1_4:+3846822 | Msa0144380:CDS |
| ATCTTGGATGATGGTGCGGA+TGG | 0.589438 | 1_4:+3847081 | Msa0144380:CDS |
| CTTGCTATAGTATTTGACGT+TGG | 0.590114 | 1_4:-3852086 | None:intergenic |
| AGTTGCGGATGGTTTGAGGA+AGG | 0.592013 | 1_4:+3847005 | Msa0144380:CDS |
| GCTGTGAATAATGAAGAAGT+TGG | 0.592703 | 1_4:+3851704 | Msa0144380:three_prime_UTR |
| ACACCTGGTTCAGTTGCGGA+TGG | 0.596519 | 1_4:+3846994 | Msa0144380:CDS |
| ATTGCATCCCTCATTATCGC+AGG | 0.597446 | 1_4:-3847406 | None:intergenic |
| TGAAGTTACAATTATCAACA+TGG | 0.598667 | 1_4:-3847374 | None:intergenic |
| CTCCACCGGATGCATCCTTG+TGG | 0.601442 | 1_4:-3847683 | None:intergenic |
| GAACTTCTAAGTTCTAAGTG+AGG | 0.602483 | 1_4:+3851832 | Msa0144380:three_prime_UTR |
| TCTTCGATTAAGATCTCCAC+CGG | 0.603492 | 1_4:-3847697 | None:intergenic |
| ACAACTGGCTTCAACACACC+TGG | 0.605123 | 1_4:+3846979 | Msa0144380:CDS |
| TGAAGAATAAACTGAGGTTG+AGG | 0.605693 | 1_4:-3851993 | None:intergenic |
| GACTGTTATTTAGAGACGGA+CGG | 0.605737 | 1_4:+3846202 | None:intergenic |
| ATGAAGATGCATGTTGGTGA+CGG | 0.608130 | 1_4:-3852058 | None:intergenic |
| GAGATCTTGAAGCTAAGCTA+GGG | 0.610250 | 1_4:+3851519 | Msa0144380:CDS |
| GAAGTTACAATTATCAACAT+GGG | 0.610841 | 1_4:-3847373 | None:intergenic |
| AAACTGAGCTAAGGCTCAAG+TGG | 0.613416 | 1_4:-3851913 | None:intergenic |
| AGGAAGAAACTCACCGACAT+GGG | 0.618238 | 1_4:-3846379 | None:intergenic |
| TACGGAAGTAGTTCACAAGT+TGG | 0.621304 | 1_4:+3846912 | Msa0144380:CDS |
| AGTGTACAGATAGCCTTATG+AGG | 0.626223 | 1_4:+3847502 | Msa0144380:CDS |
| TATTGAGTCAGGTTTCGGGA+TGG | 0.626853 | 1_4:+3847175 | Msa0144380:CDS |
| AGGCGAAAGATCCACGTCAA+CGG | 0.627431 | 1_4:-3846833 | None:intergenic |
| CCGTATCATGCAAATCACAA+TGG | 0.628266 | 1_4:-3846894 | None:intergenic |
| GAGAAGATGAAGATGCATGT+TGG | 0.629023 | 1_4:-3852064 | None:intergenic |
| AGCGCAGCTAAATTTAGGAG+AGG | 0.630174 | 1_4:-3846277 | None:intergenic |
| ACACAAGCAGAAGCTAGACC+CGG | 0.634233 | 1_4:-3846949 | None:intergenic |
| TAAAAGGACAATGTGAATCG+TGG | 0.635470 | 1_4:-3847458 | None:intergenic |
| ACGTGGATCTTTCGCCTGCG+AGG | 0.635983 | 1_4:+3846839 | Msa0144380:CDS |
| CTACGACTGTTATTTAGAGA+CGG | 0.638776 | 1_4:+3846198 | None:intergenic |
| ATTGAAAATGAGAAAGAAGG+AGG | 0.639437 | 1_4:+3846862 | Msa0144380:CDS |
| GCATCATCATTAATAGAACA+AGG | 0.641108 | 1_4:+3852022 | Msa0144380:three_prime_UTR |
| CTTGCTTAAAGGCATCCACA+AGG | 0.652007 | 1_4:+3847668 | Msa0144380:CDS |
| ATCCACAAGGATGCATCCGG+TGG | 0.656272 | 1_4:+3847681 | Msa0144380:CDS |
| ATGCAATGCGAGGTTTAGCG+CGG | 0.663261 | 1_4:+3847422 | Msa0144380:CDS |
| TGTTATCTTGGATGATGGTG+CGG | 0.668976 | 1_4:+3847077 | Msa0144380:CDS |
| CATCACATCACAACCCATGT+CGG | 0.674089 | 1_4:+3846366 | Msa0144380:exon |
| AGACAGTGAAGACACAGGCA+CGG | 0.690996 | 1_4:+3851598 | Msa0144380:CDS |
| TCTGTGACCTGCGATAATGA+GGG | 0.696713 | 1_4:+3847399 | Msa0144380:CDS |
| ATAATGAGGGATGCAATGCG+AGG | 0.701753 | 1_4:+3847412 | Msa0144380:CDS |
| ATTTAGGAGAGGAATCAGAG+TGG | 0.714521 | 1_4:-3846266 | None:intergenic |
| AATGAAGACAGTGAAGACAC+AGG | 0.715607 | 1_4:+3851593 | Msa0144380:CDS |
| CATTGATGAAGAATAAACTG+AGG | 0.791389 | 1_4:-3851999 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTCAAAAAAAAAAAAAAA+AGG | + | chr1_4:3848072-3848091 | Msa0144380:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAAGGTA+CGG | + | chr1_4:3848077-3848096 | Msa0144380:intron | 10.0% |
| !!! | ATTTTTTTTTTTTTAAACCT+TGG | - | chr1_4:3848529-3848548 | None:intergenic | 10.0% |
| !! | AGGTTTAAAAAAAAAAAAAT+TGG | + | chr1_4:3848529-3848548 | Msa0144380:intron | 10.0% |
| !!! | AATTCATTTATAATTTGTTT+AGG | - | chr1_4:3849300-3849319 | None:intergenic | 10.0% |
| !! | ATTGATTATTGATAAAACAA+GGG | + | chr1_4:3846729-3846748 | Msa0144380:intron | 15.0% |
| !!! | TATTTATAAAATTTGTTGGT+AGG | + | chr1_4:3846786-3846805 | Msa0144380:intron | 15.0% |
| !! | AAACTAGAAATAATATCAAA+AGG | - | chr1_4:3847123-3847142 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAAAAAAAGGTAC+GGG | + | chr1_4:3848078-3848097 | Msa0144380:intron | 15.0% |
| !!! | TGTTTTTTTATAAACTCAAA+CGG | - | chr1_4:3848354-3848373 | None:intergenic | 15.0% |
| !!! | TTTGAATTTTGATATTATGT+TGG | - | chr1_4:3849943-3849962 | None:intergenic | 15.0% |
| !! | AAAAAATAATTAATGATGGT+GGG | - | chr1_4:3850319-3850338 | None:intergenic | 15.0% |
| !! | AAAAAAATAATTAATGATGG+TGG | - | chr1_4:3850320-3850339 | None:intergenic | 15.0% |
| !! | AATAAATTAGATTTCAAACA+AGG | + | chr1_4:3850623-3850642 | Msa0144380:intron | 15.0% |
| !! | ACTATTAACAATATCAAAAA+AGG | + | chr1_4:3851873-3851892 | Msa0144380:three_prime_UTR | 15.0% |
| !!! | CATTTTGTAAATACAAAAAC+TGG | - | chr1_4:3846547-3846566 | None:intergenic | 20.0% |
| !!! | CAGTTTTTGTATTTACAAAA+TGG | + | chr1_4:3846545-3846564 | Msa0144380:intron | 20.0% |
| !! | TTATCAAATTGATACAATCT+AGG | - | chr1_4:3846700-3846719 | None:intergenic | 20.0% |
| !!! | GTTTTATCAATAATCAATGA+TGG | - | chr1_4:3846727-3846746 | None:intergenic | 20.0% |
| !!! | CATTGATTATTGATAAAACA+AGG | + | chr1_4:3846728-3846747 | Msa0144380:intron | 20.0% |
| !! | AATAATATCAAAAGGATGAT+CGG | - | chr1_4:3847115-3847134 | None:intergenic | 20.0% |
| !!! | TAAAATAGATGATTTTGTTC+AGG | + | chr1_4:3847221-3847240 | Msa0144380:CDS | 20.0% |
| !! | CATTAATAACTCTATCTATA+TGG | - | chr1_4:3847756-3847775 | None:intergenic | 20.0% |
| !!! | TAATTTAAAATAACATGGCA+AGG | + | chr1_4:3848123-3848142 | Msa0144380:intron | 20.0% |
| !!! | GCTTTTATAGAATATGAAAA+AGG | + | chr1_4:3848193-3848212 | Msa0144380:intron | 20.0% |
| !!! | GTTTTTTCATGAGAATTAAT+AGG | - | chr1_4:3848397-3848416 | None:intergenic | 20.0% |
| !! | TGAGAATTAATAGCAATTAT+AGG | - | chr1_4:3848431-3848450 | None:intergenic | 20.0% |
| !!! | TATAATTGCTATTAATTCTC+AGG | + | chr1_4:3848430-3848449 | Msa0144380:intron | 20.0% |
| !!! | TTTTTTTTCTTGAGAAAATG+AGG | - | chr1_4:3848461-3848480 | None:intergenic | 20.0% |
| !!! | CATTTTCTCAAGAAAAAAAA+TGG | + | chr1_4:3848461-3848480 | Msa0144380:intron | 20.0% |
| !!! | TTTTTTTTTAAACCTTGGTA+TGG | - | chr1_4:3848524-3848543 | None:intergenic | 20.0% |
| !! | AAAAAAAAATTGGTACATCA+TGG | + | chr1_4:3848539-3848558 | Msa0144380:intron | 20.0% |
| !! | AAAAAAAATTGGTACATCAT+GGG | + | chr1_4:3848540-3848559 | Msa0144380:intron | 20.0% |
| !! | TCTCCTTTCATAATAATAAA+TGG | + | chr1_4:3849555-3849574 | Msa0144380:intron | 20.0% |
| !! | TCTCCATTTATTATTATGAA+AGG | - | chr1_4:3849561-3849580 | None:intergenic | 20.0% |
| !! | TAAAACCTTTCATAAGATTT+AGG | - | chr1_4:3849858-3849877 | None:intergenic | 20.0% |
| !!! | TTTCGTAATGTTTTGAATTT+TGG | - | chr1_4:3849908-3849927 | None:intergenic | 20.0% |
| !!! | GGATTTAATGTTTTGAATTT+TGG | - | chr1_4:3849974-3849993 | None:intergenic | 20.0% |
| !!! | AATTATCAGTTCTTTTCTTT+AGG | - | chr1_4:3849995-3850014 | None:intergenic | 20.0% |
| !!! | CTTGGTTTTAAAAAAAACAA+GGG | - | chr1_4:3850104-3850123 | None:intergenic | 20.0% |
| !! | AAAGAAAAAACTGAACTATT+TGG | - | chr1_4:3850414-3850433 | None:intergenic | 20.0% |
| !!! | TAACCTTACATTTTTTTTTG+GGG | - | chr1_4:3850664-3850683 | None:intergenic | 20.0% |
| !!! | GTAACCTTACATTTTTTTTT+GGG | - | chr1_4:3850665-3850684 | None:intergenic | 20.0% |
| !! | CATGTACAACAATATAATTA+GGG | + | chr1_4:3850783-3850802 | Msa0144380:intron | 20.0% |
| !! | ATGTACAACAATATAATTAG+GGG | + | chr1_4:3850784-3850803 | Msa0144380:intron | 20.0% |
| !!! | TAAATTTTTAGACACTAATG+CGG | + | chr1_4:3851078-3851097 | Msa0144380:intron | 20.0% |
| !! | GATACATGTATTATTATGTT+TGG | + | chr1_4:3851151-3851170 | Msa0144380:intron | 20.0% |
| !! | TTTCATACTGAATTGTATAT+AGG | + | chr1_4:3851346-3851365 | Msa0144380:intron | 20.0% |
| !!! | TTAGTCTTGAAAACTTTTAA+TGG | - | chr1_4:3851801-3851820 | None:intergenic | 20.0% |
| ! | CTAGCATTTCTTTATATCTT+CGG | + | chr1_4:3846480-3846499 | Msa0144380:intron | 25.0% |
| !!! | CATGTTTTTGAAGAATTCTT+TGG | + | chr1_4:3846604-3846623 | Msa0144380:intron | 25.0% |
| ! | GAAGTTACAATTATCAACAT+GGG | - | chr1_4:3847376-3847395 | None:intergenic | 25.0% |
| ! | TGAAGTTACAATTATCAACA+TGG | - | chr1_4:3847377-3847396 | None:intergenic | 25.0% |
| ! | TCACATGGAATTATCTTAAA+AGG | - | chr1_4:3847477-3847496 | None:intergenic | 25.0% |
| ! | GATAGAGTTATTAATGAATG+TGG | + | chr1_4:3847760-3847779 | Msa0144380:intron | 25.0% |
| ! | AGTTATTAATGAATGTGGAT+CGG | + | chr1_4:3847765-3847784 | Msa0144380:intron | 25.0% |
| !! | GATAAAATTTTAAACGTGCA+GGG | - | chr1_4:3847867-3847886 | None:intergenic | 25.0% |
| !! | TGATAAAATTTTAAACGTGC+AGG | - | chr1_4:3847868-3847887 | None:intergenic | 25.0% |
| !! | TACACCATTAGAAGTTTTTA+AGG | + | chr1_4:3847977-3847996 | Msa0144380:intron | 25.0% |
| ! | AGATAAGAAGATACAAGAAA+AGG | + | chr1_4:3848217-3848236 | Msa0144380:intron | 25.0% |
| ! | TATTGACAGATAAGAAAAAG+TGG | + | chr1_4:3848271-3848290 | Msa0144380:intron | 25.0% |
| !! | ACTATTTTCAGTTTCAAAAG+AGG | + | chr1_4:3848674-3848693 | Msa0144380:intron | 25.0% |
| !!! | TAGGATTAGTTTGTAGTTTA+TGG | + | chr1_4:3848818-3848837 | Msa0144380:intron | 25.0% |
| ! | TCATCATTAATAGGACTAAT+AGG | + | chr1_4:3849030-3849049 | Msa0144380:intron | 25.0% |
| ! | ATGTGATATAGTTTATGTGA+TGG | - | chr1_4:3849238-3849257 | None:intergenic | 25.0% |
| ! | ATCACATAAACTATATCACA+TGG | + | chr1_4:3849237-3849256 | Msa0144380:intron | 25.0% |
| !! | ACATGGTTTTCTACTTTAAA+AGG | + | chr1_4:3849254-3849273 | Msa0144380:intron | 25.0% |
| !!! | CATGGTTTTCTACTTTAAAA+GGG | + | chr1_4:3849255-3849274 | Msa0144380:intron | 25.0% |
| !!! | AAGGGTTCATTTTTTAATTG+TGG | + | chr1_4:3849273-3849292 | Msa0144380:intron | 25.0% |
| ! | ATGAATTAAAACAAGATTCC+TGG | + | chr1_4:3849313-3849332 | Msa0144380:intron | 25.0% |
| ! | TGAATTAAAACAAGATTCCT+GGG | + | chr1_4:3849314-3849333 | Msa0144380:intron | 25.0% |
| ! | TACAATTTGTGTCATAAATC+TGG | + | chr1_4:3849353-3849372 | Msa0144380:intron | 25.0% |
| !!! | ATTTTAACATGTAGTTCATC+CGG | - | chr1_4:3849418-3849437 | None:intergenic | 25.0% |
| ! | AAACTAAAACATCAACACAA+TGG | - | chr1_4:3849495-3849514 | None:intergenic | 25.0% |
| !! | TTTTTGTGTGTATTTCCAAA+TGG | - | chr1_4:3849587-3849606 | None:intergenic | 25.0% |
| ! | TTGGAAATACACACAAAAAA+AGG | + | chr1_4:3849588-3849607 | Msa0144380:intron | 25.0% |
| ! | TCCTAAAAGTTATGAAATAG+CGG | - | chr1_4:3849723-3849742 | None:intergenic | 25.0% |
| ! | AGAGAAAACTGAAGTTATTA+GGG | + | chr1_4:3850056-3850075 | Msa0144380:intron | 25.0% |
| !!! | CCTTGGTTTTAAAAAAAACA+AGG | - | chr1_4:3850105-3850124 | None:intergenic | 25.0% |
| !!! | CCTTGTTTTTTTTAAAACCA+AGG | + | chr1_4:3850102-3850121 | Msa0144380:intron | 25.0% |
| !!! | AACCTTACATTTTTTTTTGG+GGG | - | chr1_4:3850663-3850682 | None:intergenic | 25.0% |
| !!! | GGTAACCTTACATTTTTTTT+TGG | - | chr1_4:3850666-3850685 | None:intergenic | 25.0% |
| ! | AATTATATTGTTGTACATGG+TGG | - | chr1_4:3850782-3850801 | None:intergenic | 25.0% |
| ! | CCTAATTATATTGTTGTACA+TGG | - | chr1_4:3850785-3850804 | None:intergenic | 25.0% |
| ! | CCATGTACAACAATATAATT+AGG | + | chr1_4:3850782-3850801 | Msa0144380:intron | 25.0% |
| !! | ATTCATTAACAATAGTTCTG+AGG | + | chr1_4:3851310-3851329 | Msa0144380:intron | 25.0% |
| !!! | TTCATTAACAATAGTTCTGA+GGG | + | chr1_4:3851311-3851330 | Msa0144380:intron | 25.0% |
| ! | TTGCAGCATTTGTTTATATT+TGG | + | chr1_4:3851375-3851394 | Msa0144380:intron | 25.0% |
| ! | TGCAGCATTTGTTTATATTT+GGG | + | chr1_4:3851376-3851395 | Msa0144380:intron | 25.0% |
| ! | TGATTATGACAAGAAAAATC+AGG | - | chr1_4:3851411-3851430 | None:intergenic | 25.0% |
| !! | CGAATTATTTGTCTTATTAC+AGG | + | chr1_4:3851436-3851455 | Msa0144380:intron | 25.0% |
| ! | TAAGCAGAAATATGTTTGTT+TGG | - | chr1_4:3851750-3851769 | None:intergenic | 25.0% |
| ! | AACGATCATTGTTGATTGAT+TGG | - | chr1_4:3846337-3846356 | None:intergenic | 30.0% |
| AGAAACAATTGCAGAGAAAA+AGG | - | chr1_4:3846410-3846429 | None:intergenic | 30.0% | |
| TTGTAATGTACCGTTCAAAA+CGG | - | chr1_4:3846509-3846528 | None:intergenic | 30.0% | |
| !!! | TACAATTTGTTTTGCTCAAC+AGG | - | chr1_4:3846645-3846664 | None:intergenic | 30.0% |
| AGGATTGAAAATGAGAAAGA+AGG | + | chr1_4:3846859-3846878 | Msa0144380:CDS | 30.0% | |
| ATTGAAAATGAGAAAGAAGG+AGG | + | chr1_4:3846862-3846881 | Msa0144380:CDS | 30.0% | |
| GAATTTATTGAGTCAGGTTT+CGG | + | chr1_4:3847170-3847189 | Msa0144380:CDS | 30.0% | |
| AATTTATTGAGTCAGGTTTC+GGG | + | chr1_4:3847171-3847190 | Msa0144380:CDS | 30.0% | |
| ! | AGATGGAAATGAATGGTTTT+TGG | + | chr1_4:3847244-3847263 | Msa0144380:CDS | 30.0% |
| TTCGTCTTTGTTAACAAAAC+TGG | - | chr1_4:3847346-3847365 | None:intergenic | 30.0% | |
| AGAACGAATAATAACAGATG+TGG | - | chr1_4:3847817-3847836 | None:intergenic | 30.0% | |
| TCTGTTATTATTCGTTCTAG+CGG | + | chr1_4:3847819-3847838 | Msa0144380:intron | 30.0% | |
| TGAGCCTTAAAAACTTCTAA+TGG | - | chr1_4:3847984-3848003 | None:intergenic | 30.0% | |
| GCTAGTATAGAATACGATAA+AGG | + | chr1_4:3848162-3848181 | Msa0144380:intron | 30.0% | |
| GTATAGAATACGATAAAGGA+AGG | + | chr1_4:3848166-3848185 | Msa0144380:intron | 30.0% | |
| TTTAAACCTTGGTATGGTTA+CGG | - | chr1_4:3848518-3848537 | None:intergenic | 30.0% | |
| ! | GAAACTGAAAATAGTTTGCA+AGG | - | chr1_4:3848669-3848688 | None:intergenic | 30.0% |
| AAATTATCCAATCCCAAATC+AGG | + | chr1_4:3848962-3848981 | Msa0144380:intron | 30.0% | |
| ! | ATGAAGAGAGAATATGGTTT+TGG | - | chr1_4:3849002-3849021 | None:intergenic | 30.0% |
| TCAATGGCATCATCATTAAT+AGG | + | chr1_4:3849021-3849040 | Msa0144380:intron | 30.0% | |
| TCATTAATAGGACTAATAGG+AGG | + | chr1_4:3849033-3849052 | Msa0144380:intron | 30.0% | |
| TTTATGTGATGGCTAATTCA+AGG | - | chr1_4:3849227-3849246 | None:intergenic | 30.0% | |
| ATTCTATTCGATAAAATCCC+AGG | - | chr1_4:3849334-3849353 | None:intergenic | 30.0% | |
| ! | GGAATTGAAGTATCTTTGAA+AGG | - | chr1_4:3849387-3849406 | None:intergenic | 30.0% |
| AATAAATGGAGAATGCCATT+TGG | + | chr1_4:3849569-3849588 | Msa0144380:intron | 30.0% | |
| ATACACACAAAAAAAGGATG+TGG | + | chr1_4:3849594-3849613 | Msa0144380:intron | 30.0% | |
| TACACACAAAAAAAGGATGT+GGG | + | chr1_4:3849595-3849614 | Msa0144380:intron | 30.0% | |
| !! | ACCGCTATTTCATAACTTTT+AGG | + | chr1_4:3849719-3849738 | Msa0144380:intron | 30.0% |
| AACCACCTAAATCTTATGAA+AGG | + | chr1_4:3849850-3849869 | Msa0144380:intron | 30.0% | |
| AACCTTTCATAAGATTTAGG+TGG | - | chr1_4:3849855-3849874 | None:intergenic | 30.0% | |
| !! | CGTAATGTTTTGAATTTTGG+TGG | - | chr1_4:3849905-3849924 | None:intergenic | 30.0% |
| GAAAAGAACTGATAATTCCA+AGG | + | chr1_4:3849998-3850017 | Msa0144380:intron | 30.0% | |
| GAGAGAAAACTGAAGTTATT+AGG | + | chr1_4:3850055-3850074 | Msa0144380:intron | 30.0% | |
| CTTCACGTAAAATGAAATAG+CGG | + | chr1_4:3850137-3850156 | Msa0144380:intron | 30.0% | |
| AAGAGATAAAGACGCATAAA+AGG | - | chr1_4:3850347-3850366 | None:intergenic | 30.0% | |
| CAAATGGAGAAAGACATAAT+TGG | + | chr1_4:3850367-3850386 | Msa0144380:intron | 30.0% | |
| GAAAAAACTGAACTATTTGG+TGG | - | chr1_4:3850411-3850430 | None:intergenic | 30.0% | |
| TTTATCCTGTCTTTCATCAA+TGG | + | chr1_4:3850566-3850585 | Msa0144380:intron | 30.0% | |
| TTCTTAGTTACAGTCTCATA+TGG | - | chr1_4:3850596-3850615 | None:intergenic | 30.0% | |
| ATATGAGACTGTAACTAAGA+AGG | + | chr1_4:3850595-3850614 | Msa0144380:intron | 30.0% | |
| TATGAGACTGTAACTAAGAA+GGG | + | chr1_4:3850596-3850615 | Msa0144380:intron | 30.0% | |
| AACCCCCAAAAAAAAATGTA+AGG | + | chr1_4:3850658-3850677 | Msa0144380:intron | 30.0% | |
| TCAAAAGAGAAGATTTGATC+AGG | - | chr1_4:3850709-3850728 | None:intergenic | 30.0% | |
| TATAGTGGTGAAAAATGTTG+TGG | - | chr1_4:3850851-3850870 | None:intergenic | 30.0% | |
| ATCAAGTACTCAATTTCTGT+TGG | + | chr1_4:3851238-3851257 | Msa0144380:intron | 30.0% | |
| AGTCATACGCTAATACATAA+AGG | - | chr1_4:3851268-3851287 | None:intergenic | 30.0% | |
| CATTGATGAAGAATAAACTG+AGG | - | chr1_4:3852002-3852021 | None:intergenic | 30.0% | |
| CTCAGTTTATTCTTCATCAA+TGG | + | chr1_4:3852000-3852019 | Msa0144380:three_prime_UTR | 30.0% | |
| GCATCATCATTAATAGAACA+AGG | + | chr1_4:3852022-3852041 | Msa0144380:three_prime_UTR | 30.0% | |
| ! | AAGAAAGCGCAGCTAAATTT+AGG | - | chr1_4:3846285-3846304 | None:intergenic | 35.0% |
| ACAATTGCAGAGAAAAAGGA+AGG | - | chr1_4:3846406-3846425 | None:intergenic | 35.0% | |
| !! | TTGGTAGGTTTTATCAAGCA+TGG | + | chr1_4:3846801-3846820 | Msa0144380:intron | 35.0% |
| TGCAAATCACAATGGAACAT+TGG | - | chr1_4:3846889-3846908 | None:intergenic | 35.0% | |
| ! | CCATTGTGATTTGCATGATA+CGG | + | chr1_4:3846894-3846913 | Msa0144380:CDS | 35.0% |
| ! | ACGATTTTGTAGATTCGAAG+AGG | + | chr1_4:3847148-3847167 | Msa0144380:CDS | 35.0% |
| GAAGAGGAATTTATTGAGTC+AGG | + | chr1_4:3847164-3847183 | Msa0144380:CDS | 35.0% | |
| ! | AGATGATTTTGTTCAGGAGA+TGG | + | chr1_4:3847227-3847246 | Msa0144380:CDS | 35.0% |
| TAAAAGGACAATGTGAATCG+TGG | - | chr1_4:3847461-3847480 | None:intergenic | 35.0% | |
| CACTTAATGCACTTGCTTAA+AGG | + | chr1_4:3847657-3847676 | Msa0144380:CDS | 35.0% | |
| AAGAGTAGAACAGATTGTAC+AGG | + | chr1_4:3847716-3847735 | Msa0144380:CDS | 35.0% | |
| GAATGTAAGCAGAAAGATGT+TGG | - | chr1_4:3847938-3847957 | None:intergenic | 35.0% | |
| GAATACGATAAAGGAAGGAT+TGG | + | chr1_4:3848171-3848190 | Msa0144380:intron | 35.0% | |
| CAACAACATTTACTAGACTC+TGG | - | chr1_4:3848320-3848339 | None:intergenic | 35.0% | |
| GAGTCTAGTAAATGTTGTTG+TGG | + | chr1_4:3848320-3848339 | Msa0144380:intron | 35.0% | |
| GATGATGACTATCCTGATTT+GGG | - | chr1_4:3848977-3848996 | None:intergenic | 35.0% | |
| ! | TGATGATGACTATCCTGATT+TGG | - | chr1_4:3848978-3848997 | None:intergenic | 35.0% |
| CCATTGATGAAGAGAGAATA+TGG | - | chr1_4:3849008-3849027 | None:intergenic | 35.0% | |
| CCATATTCTCTCTTCATCAA+TGG | + | chr1_4:3849005-3849024 | Msa0144380:intron | 35.0% | |
| GAAGACATCTTACTTGATGT+TGG | - | chr1_4:3849105-3849124 | None:intergenic | 35.0% | |
| TTAAGATGCAGATCCAGAAT+TGG | - | chr1_4:3849461-3849480 | None:intergenic | 35.0% | |
| CTATCCGCTATTAACTACTA+TGG | - | chr1_4:3849643-3849662 | None:intergenic | 35.0% | |
| !! | TAGTAGTTAATAGCGGATAG+CGG | + | chr1_4:3849643-3849662 | Msa0144380:intron | 35.0% |
| !!! | ATCCCGCTATAGCATTTTTT+GGG | - | chr1_4:3849683-3849702 | None:intergenic | 35.0% |
| !!! | TATCCCGCTATAGCATTTTT+TGG | - | chr1_4:3849684-3849703 | None:intergenic | 35.0% |
| GATAATTCCAAGGAGATGAA+AGG | + | chr1_4:3850008-3850027 | Msa0144380:intron | 35.0% | |
| CTTCCTTCTTTCATTCTCTA+CGG | - | chr1_4:3850036-3850055 | None:intergenic | 35.0% | |
| TGAAGATACAAGATTCTCCT+TGG | - | chr1_4:3850122-3850141 | None:intergenic | 35.0% | |
| AAAACAACTATGCAGTGTTG+CGG | + | chr1_4:3850171-3850190 | Msa0144380:intron | 35.0% | |
| TGCGTCTTTATCTCTTCAAA+TGG | + | chr1_4:3850351-3850370 | Msa0144380:intron | 35.0% | |
| TCATTATCATACATGCTCTC+TGG | + | chr1_4:3850456-3850475 | Msa0144380:intron | 35.0% | |
| TCATTATCAACAGTGAATCC+AGG | + | chr1_4:3850483-3850502 | Msa0144380:intron | 35.0% | |
| CATTATCAACAGTGAATCCA+GGG | + | chr1_4:3850484-3850503 | Msa0144380:intron | 35.0% | |
| ATTATCAACAGTGAATCCAG+GGG | + | chr1_4:3850485-3850504 | Msa0144380:intron | 35.0% | |
| GAAAACCATTGATGAAAGAC+AGG | - | chr1_4:3850574-3850593 | None:intergenic | 35.0% | |
| ATGAGACTGTAACTAAGAAG+GGG | + | chr1_4:3850597-3850616 | Msa0144380:intron | 35.0% | |
| AGATTTGATCAGGCTTCAAT+GGG | - | chr1_4:3850699-3850718 | None:intergenic | 35.0% | |
| AAGATTTGATCAGGCTTCAA+TGG | - | chr1_4:3850700-3850719 | None:intergenic | 35.0% | |
| AGCGTTCATTTATGAAGAGA+TGG | - | chr1_4:3850737-3850756 | None:intergenic | 35.0% | |
| !! | ATTGTTGTACATGGTGGATT+TGG | - | chr1_4:3850776-3850795 | None:intergenic | 35.0% |
| AATGTTGTGAATTGCATGAG+TGG | - | chr1_4:3850817-3850836 | None:intergenic | 35.0% | |
| TGAAAAATGTTGTGGAGTTC+AGG | - | chr1_4:3850843-3850862 | None:intergenic | 35.0% | |
| CTTCTCATCATGCATTATAG+TGG | - | chr1_4:3850866-3850885 | None:intergenic | 35.0% | |
| !! | GTTGTTCATCAATTTGTTGC+TGG | + | chr1_4:3850956-3850975 | Msa0144380:intron | 35.0% |
| TACAGGCATCAACAAACAAT+AGG | + | chr1_4:3851453-3851472 | Msa0144380:intron | 35.0% | |
| ! | TCTATGAGATTGACTTCCAA+AGG | - | chr1_4:3851545-3851564 | None:intergenic | 35.0% |
| GCTGTGAATAATGAAGAAGT+TGG | + | chr1_4:3851704-3851723 | Msa0144380:three_prime_UTR | 35.0% | |
| GCAGAAATATGTTTGTTTGG+TGG | - | chr1_4:3851747-3851766 | None:intergenic | 35.0% | |
| !! | GAACTTCTAAGTTCTAAGTG+AGG | + | chr1_4:3851832-3851851 | Msa0144380:three_prime_UTR | 35.0% |
| AAAAAAGGTCTGAGAGAAGT+TGG | + | chr1_4:3851888-3851907 | Msa0144380:three_prime_UTR | 35.0% | |
| AACTAATCCAAACTGAGCTA+AGG | - | chr1_4:3851925-3851944 | None:intergenic | 35.0% | |
| TGAAGAATAAACTGAGGTTG+AGG | - | chr1_4:3851996-3852015 | None:intergenic | 35.0% | |
| ! | CTTGCTATAGTATTTGACGT+TGG | - | chr1_4:3852089-3852108 | None:intergenic | 35.0% |
| GAGGAGAATGTTCGTTCAAA+AGG | - | chr1_4:3846247-3846266 | None:intergenic | 40.0% | |
| ATTTAGGAGAGGAATCAGAG+TGG | - | chr1_4:3846269-3846288 | None:intergenic | 40.0% | |
| TTGCAGAGAAAAAGGAAGGA+AGG | - | chr1_4:3846402-3846421 | None:intergenic | 40.0% | |
| !! | TCTTCGGATTCCGTTTTGAA+CGG | + | chr1_4:3846496-3846515 | Msa0144380:intron | 40.0% |
| ! | TTCTCATTTTCAATCCTCGC+AGG | - | chr1_4:3846856-3846875 | None:intergenic | 40.0% |
| CCGTATCATGCAAATCACAA+TGG | - | chr1_4:3846897-3846916 | None:intergenic | 40.0% | |
| TACGGAAGTAGTTCACAAGT+TGG | + | chr1_4:3846912-3846931 | Msa0144380:CDS | 40.0% | |
| !! | GCTTGTGTTGATAACACAAC+TGG | + | chr1_4:3846964-3846983 | Msa0144380:CDS | 40.0% |
| TGTTGCTGAGACTGTTATCT+TGG | + | chr1_4:3847065-3847084 | Msa0144380:CDS | 40.0% | |
| GAGACTGTTATCTTGGATGA+TGG | + | chr1_4:3847072-3847091 | Msa0144380:CDS | 40.0% | |
| ! | TGTTATCTTGGATGATGGTG+CGG | + | chr1_4:3847077-3847096 | Msa0144380:CDS | 40.0% |
| GTTCAGGAGATGGAAATGAA+TGG | + | chr1_4:3847237-3847256 | Msa0144380:CDS | 40.0% | |
| !! | AGTGTACAGATAGCCTTATG+AGG | + | chr1_4:3847502-3847521 | Msa0144380:CDS | 40.0% |
| GACAACCAACAGCATAGAAA+GGG | - | chr1_4:3847581-3847600 | None:intergenic | 40.0% | |
| TCTTCGATTAAGATCTCCAC+CGG | - | chr1_4:3847700-3847719 | None:intergenic | 40.0% | |
| GTAAGCAGAAAGATGTTGGA+TGG | - | chr1_4:3847934-3847953 | None:intergenic | 40.0% | |
| ! | AAAAAAGGTACGGGTACGTT+AGG | + | chr1_4:3848087-3848106 | Msa0144380:intron | 40.0% |
| ! | TACGGGTACGTTTTGCAAAT+TGG | + | chr1_4:3848613-3848632 | Msa0144380:intron | 40.0% |
| !! | ATTTGACAACCTCTGAAGCA+CGG | - | chr1_4:3848644-3848663 | None:intergenic | 40.0% |
| TTAGTGACTAAGACCTCTTG+TGG | + | chr1_4:3848699-3848718 | Msa0144380:intron | 40.0% | |
| TAGTGACTAAGACCTCTTGT+GGG | + | chr1_4:3848700-3848719 | Msa0144380:intron | 40.0% | |
| TTACAGAGTCTATGCCTCTT+CGG | - | chr1_4:3848771-3848790 | None:intergenic | 40.0% | |
| AACTAATCCTAACTGAGCTC+AGG | - | chr1_4:3848809-3848828 | None:intergenic | 40.0% | |
| !! | TGACTATCCTGATTTGGGAT+TGG | - | chr1_4:3848972-3848991 | None:intergenic | 40.0% |
| !! | TAGTGTTGTTGGTGACAGTT+TGG | - | chr1_4:3849064-3849083 | None:intergenic | 40.0% |
| !! | TGAATGGGTTGAGAATGTAG+AGG | - | chr1_4:3849145-3849164 | None:intergenic | 40.0% |
| TCAACCCATTCATCTCAGAA+CGG | + | chr1_4:3849153-3849172 | Msa0144380:intron | 40.0% | |
| !! | AGATCCGTTCTGAGATGAAT+GGG | - | chr1_4:3849160-3849179 | None:intergenic | 40.0% |
| !! | AAGATCCGTTCTGAGATGAA+TGG | - | chr1_4:3849161-3849180 | None:intergenic | 40.0% |
| TCAAGGTTGGGCAAAAAAGA+AGG | - | chr1_4:3849210-3849229 | None:intergenic | 40.0% | |
| GTGATGGCTAATTCAAGGTT+GGG | - | chr1_4:3849222-3849241 | None:intergenic | 40.0% | |
| TGTGATGGCTAATTCAAGGT+TGG | - | chr1_4:3849223-3849242 | None:intergenic | 40.0% | |
| ACTTCAATTCCACTCACAAC+CGG | + | chr1_4:3849396-3849415 | Msa0144380:intron | 40.0% | |
| GAAAGGAGATATCCTTACTC+TGG | - | chr1_4:3849544-3849563 | None:intergenic | 40.0% | |
| CCGCTATTAACTACTATGGT+GGG | - | chr1_4:3849639-3849658 | None:intergenic | 40.0% | |
| CCCACCATAGTAGTTAATAG+CGG | + | chr1_4:3849636-3849655 | Msa0144380:intron | 40.0% | |
| TCCGCTATTAACTACTATGG+TGG | - | chr1_4:3849640-3849659 | None:intergenic | 40.0% | |
| CGACCCAAAAAATGCTATAG+CGG | + | chr1_4:3849677-3849696 | Msa0144380:intron | 40.0% | |
| GACCCAAAAAATGCTATAGC+GGG | + | chr1_4:3849678-3849697 | Msa0144380:intron | 40.0% | |
| CCATATGGCTTATTGCATAG+CGG | + | chr1_4:3850226-3850245 | Msa0144380:intron | 40.0% | |
| GGAGAAAGACATAATTGGAG+AGG | + | chr1_4:3850372-3850391 | Msa0144380:intron | 40.0% | |
| GCAAGATGGGGTTAAAGTAA+AGG | + | chr1_4:3850514-3850533 | Msa0144380:intron | 40.0% | |
| ATGCAACATGCAATGACCTA+CGG | + | chr1_4:3850538-3850557 | Msa0144380:intron | 40.0% | |
| GATTTGATCAGGCTTCAATG+GGG | - | chr1_4:3850698-3850717 | None:intergenic | 40.0% | |
| TCATAAATGAACGCTGTGAC+TGG | + | chr1_4:3850742-3850761 | Msa0144380:intron | 40.0% | |
| TGAGTACTTGATTGAAGCAG+AGG | - | chr1_4:3851230-3851249 | None:intergenic | 40.0% | |
| AGAGATCTTGAAGCTAAGCT+AGG | + | chr1_4:3851518-3851537 | Msa0144380:CDS | 40.0% | |
| GAGATCTTGAAGCTAAGCTA+GGG | + | chr1_4:3851519-3851538 | Msa0144380:CDS | 40.0% | |
| GTCTTCACTGTCTTCATTCT+TGG | - | chr1_4:3851591-3851610 | None:intergenic | 40.0% | |
| AATGAAGACAGTGAAGACAC+AGG | + | chr1_4:3851593-3851612 | Msa0144380:CDS | 40.0% | |
| ! | ATGAAGATGCATGTTGGTGA+CGG | - | chr1_4:3852061-3852080 | None:intergenic | 40.0% |
| GAGAAGATGAAGATGCATGT+TGG | - | chr1_4:3852067-3852086 | None:intergenic | 40.0% | |
| TTTAGAGACGGACGGAGTAT+TGG | + | chr1_4:3846210-3846229 | Msa0144380:five_prime_UTR | 45.0% | |
| AGCGCAGCTAAATTTAGGAG+AGG | - | chr1_4:3846280-3846299 | None:intergenic | 45.0% | |
| CATCACATCACAACCCATGT+CGG | + | chr1_4:3846366-3846385 | Msa0144380:exon | 45.0% | |
| AGGAAGAAACTCACCGACAT+GGG | - | chr1_4:3846382-3846401 | None:intergenic | 45.0% | |
| AAGGAAGAAACTCACCGACA+TGG | - | chr1_4:3846383-3846402 | None:intergenic | 45.0% | |
| ! | GTTGGCTCAAATGTTTCTGC+CGG | + | chr1_4:3846930-3846949 | Msa0144380:CDS | 45.0% |
| ! | TTGGCTCAAATGTTTCTGCC+GGG | + | chr1_4:3846931-3846950 | Msa0144380:CDS | 45.0% |
| TATTGAGTCAGGTTTCGGGA+TGG | + | chr1_4:3847175-3847194 | Msa0144380:CDS | 45.0% | |
| ATCTGTGACCTGCGATAATG+AGG | + | chr1_4:3847398-3847417 | Msa0144380:CDS | 45.0% | |
| TCTGTGACCTGCGATAATGA+GGG | + | chr1_4:3847399-3847418 | Msa0144380:CDS | 45.0% | |
| ATTGCATCCCTCATTATCGC+AGG | - | chr1_4:3847409-3847428 | None:intergenic | 45.0% | |
| ATAATGAGGGATGCAATGCG+AGG | + | chr1_4:3847412-3847431 | Msa0144380:CDS | 45.0% | |
| GTTTAGCGCGGTTCATTTGA+AGG | + | chr1_4:3847434-3847453 | Msa0144380:CDS | 45.0% | |
| TCTGTACACTTCTGCTCACA+TGG | - | chr1_4:3847492-3847511 | None:intergenic | 45.0% | |
| !! | TAGCCTTATGAGGCGTGATA+TGG | + | chr1_4:3847512-3847531 | Msa0144380:CDS | 45.0% |
| TGTCCATATCACGCCTCATA+AGG | - | chr1_4:3847518-3847537 | None:intergenic | 45.0% | |
| TTATGAGGCGTGATATGGAC+AGG | + | chr1_4:3847517-3847536 | Msa0144380:CDS | 45.0% | |
| AACTGCCCTTTCTATGCTGT+TGG | + | chr1_4:3847573-3847592 | Msa0144380:CDS | 45.0% | |
| CGACAACCAACAGCATAGAA+AGG | - | chr1_4:3847582-3847601 | None:intergenic | 45.0% | |
| ! | CTATGCTGTTGGTTGTCGAT+CGG | + | chr1_4:3847584-3847603 | Msa0144380:CDS | 45.0% |
| ATCGGCTATTGCGCAATGTA+TGG | + | chr1_4:3847602-3847621 | Msa0144380:CDS | 45.0% | |
| GCTATTGCGCAATGTATGGT+TGG | + | chr1_4:3847606-3847625 | Msa0144380:CDS | 45.0% | |
| !! | CTTGCTTAAAGGCATCCACA+AGG | + | chr1_4:3847668-3847687 | Msa0144380:CDS | 45.0% |
| GAGTTGTCAACTGTGTTGCA+CGG | + | chr1_4:3848027-3848046 | Msa0144380:intron | 45.0% | |
| AGTTGTCAACTGTGTTGCAC+GGG | + | chr1_4:3848028-3848047 | Msa0144380:intron | 45.0% | |
| TTGGTATGGTTACGGTATGG+TGG | - | chr1_4:3848510-3848529 | None:intergenic | 45.0% | |
| ACCATACCGTAACCATACCA+AGG | + | chr1_4:3848509-3848528 | Msa0144380:intron | 45.0% | |
| ACCTTGGTATGGTTACGGTA+TGG | - | chr1_4:3848513-3848532 | None:intergenic | 45.0% | |
| TTTGCAAAACGTACCCGTAC+CGG | - | chr1_4:3848612-3848631 | None:intergenic | 45.0% | |
| !! | TTTGACAACCTCTGAAGCAC+GGG | - | chr1_4:3848643-3848662 | None:intergenic | 45.0% |
| AGTGACTAAGACCTCTTGTG+GGG | + | chr1_4:3848701-3848720 | Msa0144380:intron | 45.0% | |
| ACTATATGTCCAGCTTTGCC+AGG | - | chr1_4:3848748-3848767 | None:intergenic | 45.0% | |
| GAGGCATAGACTCTGTAAGA+CGG | + | chr1_4:3848773-3848792 | Msa0144380:intron | 45.0% | |
| TCACCAACAACACTAACACC+AGG | + | chr1_4:3849069-3849088 | Msa0144380:intron | 45.0% | |
| CACCAACAACACTAACACCA+GGG | + | chr1_4:3849070-3849089 | Msa0144380:intron | 45.0% | |
| ACCAACAACACTAACACCAG+GGG | + | chr1_4:3849071-3849090 | Msa0144380:intron | 45.0% | |
| GGGCAAAAAAGAAGGAAGCT+AGG | - | chr1_4:3849202-3849221 | None:intergenic | 45.0% | |
| ATGCAGATCCAGAATTGGAG+TGG | - | chr1_4:3849456-3849475 | None:intergenic | 45.0% | |
| AGGAGATATCCTTACTCTGG+TGG | - | chr1_4:3849541-3849560 | None:intergenic | 45.0% | |
| TCTCATAACGCTACGCCATA+TGG | + | chr1_4:3850211-3850230 | Msa0144380:intron | 45.0% | |
| CCGCTATGCAATAAGCCATA+TGG | - | chr1_4:3850229-3850248 | None:intergenic | 45.0% | |
| AGTTAATAGCGGCGCTATAG+CGG | - | chr1_4:3850287-3850306 | None:intergenic | 45.0% | |
| GGACCCAGAGTAGTTAATAG+CGG | - | chr1_4:3850298-3850317 | None:intergenic | 45.0% | |
| TGCTGGATTGACATGCATTC+TGG | + | chr1_4:3850973-3850992 | Msa0144380:intron | 45.0% | |
| !! | GCATTCTGGAGTTCATACAC+TGG | + | chr1_4:3850987-3851006 | Msa0144380:intron | 45.0% |
| TTTAGACACTAATGCGGCTG+TGG | + | chr1_4:3851084-3851103 | Msa0144380:intron | 45.0% | |
| CGGCTGTGGCATATATATTG+TGG | + | chr1_4:3851098-3851117 | Msa0144380:intron | 45.0% | |
| AAACTGAGCTAAGGCTCAAG+TGG | - | chr1_4:3851916-3851935 | None:intergenic | 45.0% | |
| ACTTGAGCCTTAGCTCAGTT+TGG | + | chr1_4:3851915-3851934 | Msa0144380:three_prime_UTR | 45.0% | |
| !!! | TTTTTATTTATAAAATTTGT+TGG | + | chr1_4:3846782-3846801 | Msa0144380:intron | 5.0% |
| !!! | TTTTTTAATTTAAAATAACA+TGG | + | chr1_4:3848118-3848137 | Msa0144380:intron | 5.0% |
| !! | AAAAAAAAAATAATTAATGA+TGG | - | chr1_4:3850323-3850342 | None:intergenic | 5.0% |
| !! | GACGGACGGAGTATTGGTTA+TGG | + | chr1_4:3846216-3846235 | Msa0144380:five_prime_UTR | 50.0% |
| TAGGAGAGGAATCAGAGTGG+AGG | - | chr1_4:3846266-3846285 | None:intergenic | 50.0% | |
| GAAAGATCCACGTCAACGGT+TGG | - | chr1_4:3846832-3846851 | None:intergenic | 50.0% | |
| AGGCGAAAGATCCACGTCAA+CGG | - | chr1_4:3846836-3846855 | None:intergenic | 50.0% | |
| ACACAAGCAGAAGCTAGACC+CGG | - | chr1_4:3846952-3846971 | None:intergenic | 50.0% | |
| ! | ACAACTGGCTTCAACACACC+TGG | + | chr1_4:3846979-3846998 | Msa0144380:CDS | 50.0% |
| CAACACACCTGGTTCAGTTG+CGG | + | chr1_4:3846990-3847009 | Msa0144380:CDS | 50.0% | |
| AAACCATCCGCAACTGAACC+AGG | - | chr1_4:3847000-3847019 | None:intergenic | 50.0% | |
| GTTCAGTTGCGGATGGTTTG+AGG | + | chr1_4:3847001-3847020 | Msa0144380:CDS | 50.0% | |
| AGTTGCGGATGGTTTGAGGA+AGG | + | chr1_4:3847005-3847024 | Msa0144380:CDS | 50.0% | |
| ! | ATCTTGGATGATGGTGCGGA+TGG | + | chr1_4:3847081-3847100 | Msa0144380:CDS | 50.0% |
| ATGCAATGCGAGGTTTAGCG+CGG | + | chr1_4:3847422-3847441 | Msa0144380:CDS | 50.0% | |
| GGGCAGTTCACAAGCTTCAT+CGG | - | chr1_4:3847561-3847580 | None:intergenic | 50.0% | |
| !! | GTATGGTGGTGGTACTCTCA+GGG | - | chr1_4:3848496-3848515 | None:intergenic | 50.0% |
| GTATGGTTACGGTATGGTGG+TGG | - | chr1_4:3848507-3848526 | None:intergenic | 50.0% | |
| CATACGAGTACCAGTACCTG+CGG | + | chr1_4:3848581-3848600 | Msa0144380:intron | 50.0% | |
| TTGCAAAACGTACCCGTACC+GGG | - | chr1_4:3848611-3848630 | None:intergenic | 50.0% | |
| TAAGACCTCTTGTGGGGATG+TGG | + | chr1_4:3848707-3848726 | Msa0144380:intron | 50.0% | |
| !! | TGGAGGGTTGGTCAAATTCC+TGG | + | chr1_4:3848727-3848746 | Msa0144380:intron | 50.0% |
| GGTCAAATTCCTGGCAAAGC+TGG | + | chr1_4:3848736-3848755 | Msa0144380:intron | 50.0% | |
| GCTGGACATATAGTCCGAAG+AGG | + | chr1_4:3848754-3848773 | Msa0144380:intron | 50.0% | |
| ACTTGAGCCTGAGCTCAGTT+AGG | + | chr1_4:3848799-3848818 | Msa0144380:intron | 50.0% | |
| GTAGTTCATCCGGTTGTGAG+TGG | - | chr1_4:3849408-3849427 | None:intergenic | 50.0% | |
| CACGTGAACCACTCCAATTC+TGG | + | chr1_4:3849445-3849464 | Msa0144380:intron | 50.0% | |
| ATGTGGGTCCTACCATTGAG+TGG | + | chr1_4:3849611-3849630 | Msa0144380:intron | 50.0% | |
| TGTGGGTCCTACCATTGAGT+GGG | + | chr1_4:3849612-3849631 | Msa0144380:intron | 50.0% | |
| GAAATAGCGGTCATAGCGCT+AGG | - | chr1_4:3849710-3849729 | None:intergenic | 50.0% | |
| GCGCCGTAGAGAATGAAAGA+AGG | + | chr1_4:3850030-3850049 | Msa0144380:intron | 50.0% | |
| ! | ATGAGATAGCGGCGCTATAG+CGG | - | chr1_4:3850197-3850216 | None:intergenic | 50.0% |
| GGCGTAGCGTTATGAGATAG+CGG | - | chr1_4:3850208-3850227 | None:intergenic | 50.0% | |
| TGGCTTATTGCATAGCGGTC+CGG | + | chr1_4:3850231-3850250 | Msa0144380:intron | 50.0% | |
| AGCGCCGCTATTAACTACTC+TGG | + | chr1_4:3850291-3850310 | Msa0144380:intron | 50.0% | |
| GCGCCGCTATTAACTACTCT+GGG | + | chr1_4:3850292-3850311 | Msa0144380:intron | 50.0% | |
| ! | TCCAGGGGCATAATGCAAGA+TGG | + | chr1_4:3850500-3850519 | Msa0144380:intron | 50.0% |
| ! | CCAGGGGCATAATGCAAGAT+GGG | + | chr1_4:3850501-3850520 | Msa0144380:intron | 50.0% |
| ! | CAGGGGCATAATGCAAGATG+GGG | + | chr1_4:3850502-3850521 | Msa0144380:intron | 50.0% |
| GCTTCAATGGGGTCGATAGA+CGG | - | chr1_4:3850687-3850706 | None:intergenic | 50.0% | |
| TGAAGCTAAGCTAGGGCCTT+TGG | + | chr1_4:3851526-3851545 | Msa0144380:CDS | 50.0% | |
| AGACAGTGAAGACACAGGCA+CGG | + | chr1_4:3851598-3851617 | Msa0144380:CDS | 50.0% | |
| AGACACAGGCACGGAAACAA+AGG | + | chr1_4:3851607-3851626 | Msa0144380:CDS | 50.0% | |
| GACACAGGCACGGAAACAAA+GGG | + | chr1_4:3851608-3851627 | Msa0144380:CDS | 50.0% | |
| !! | GATGCATGTTGGTGACGGTT+TGG | - | chr1_4:3852056-3852075 | None:intergenic | 50.0% |
| ACACCTGGTTCAGTTGCGGA+TGG | + | chr1_4:3846994-3847013 | Msa0144380:CDS | 55.0% | |
| ! | TTGGATGATGGTGCGGATGG+TGG | + | chr1_4:3847084-3847103 | Msa0144380:CDS | 55.0% |
| GGCATCCACAAGGATGCATC+CGG | + | chr1_4:3847678-3847697 | Msa0144380:CDS | 55.0% | |
| ATCCACAAGGATGCATCCGG+TGG | + | chr1_4:3847681-3847700 | Msa0144380:CDS | 55.0% | |
| TCAACTGTGTTGCACGGGTG+CGG | + | chr1_4:3848033-3848052 | Msa0144380:intron | 55.0% | |
| !! | GGTATGGTGGTGGTACTCTC+AGG | - | chr1_4:3848497-3848516 | None:intergenic | 55.0% |
| !! | CGCAGGTACTGGTACTCGTA+TGG | - | chr1_4:3848583-3848602 | None:intergenic | 55.0% |
| ! | TTGGAGTACCCGTGCTTCAG+AGG | + | chr1_4:3848632-3848651 | Msa0144380:intron | 55.0% |
| ACCTCTTGTGGGGATGTGGA+GGG | + | chr1_4:3848711-3848730 | Msa0144380:intron | 55.0% | |
| ! | GCCCCTGGTGTTAGTGTTGT+TGG | - | chr1_4:3849075-3849094 | None:intergenic | 55.0% |
| GATGTTGGAGAAGATGCCCC+TGG | - | chr1_4:3849090-3849109 | None:intergenic | 55.0% | |
| GCAAGCTGACCACCAGAGTA+AGG | + | chr1_4:3849529-3849548 | Msa0144380:intron | 55.0% | |
| ! | CTATGGTGGGACCCACTCAA+TGG | - | chr1_4:3849626-3849645 | None:intergenic | 55.0% |
| TACGGCGCCTTTCATCTCCT+TGG | - | chr1_4:3850018-3850037 | None:intergenic | 55.0% | |
| CCCATCTTGCATTATGCCCC+TGG | - | chr1_4:3850504-3850523 | None:intergenic | 55.0% | |
| GACAGGATAAACAGCGCCGT+AGG | - | chr1_4:3850557-3850576 | None:intergenic | 55.0% | |
| ACGTGGATCTTTCGCCTGCG+AGG | + | chr1_4:3846839-3846858 | Msa0144380:CDS | 60.0% | |
| CTCCACCGGATGCATCCTTG+TGG | - | chr1_4:3847686-3847705 | None:intergenic | 60.0% | |
| CAACTGTGTTGCACGGGTGC+GGG | + | chr1_4:3848034-3848053 | Msa0144380:intron | 60.0% | |
| ! | ACCAGTACCTGCGGAGTACC+CGG | + | chr1_4:3848590-3848609 | Msa0144380:intron | 60.0% |
| ! | TACCTGCGGAGTACCCGGTA+CGG | + | chr1_4:3848595-3848614 | Msa0144380:intron | 60.0% |
| GACCTCTTGTGGGGATGTGG+AGG | + | chr1_4:3848710-3848729 | Msa0144380:intron | 60.0% | |
| ACCCTCCACATCCCCACAAG+AGG | - | chr1_4:3848715-3848734 | None:intergenic | 60.0% | |
| CTTGTGGGGATGTGGAGGGT+TGG | + | chr1_4:3848715-3848734 | Msa0144380:intron | 60.0% | |
| GGTGGGACCCACTCAATGGT+AGG | - | chr1_4:3849622-3849641 | None:intergenic | 60.0% | |
| GGCGCTATAGCGGCCAATAG+CGG | - | chr1_4:3850277-3850296 | None:intergenic | 60.0% | |
| !! | GGAAGCGCCAACCGTTGACG+TGG | + | chr1_4:3846822-3846841 | Msa0144380:CDS | 65.0% |
| GTGTTGCACGGGTGCGGGTA+CGG | + | chr1_4:3848039-3848058 | Msa0144380:intron | 65.0% | |
| TGTTGCACGGGTGCGGGTAC+GGG | + | chr1_4:3848040-3848059 | Msa0144380:intron | 65.0% | |
| ACGGGTGCGGGTACGGGATA+CGG | + | chr1_4:3848046-3848065 | Msa0144380:intron | 65.0% | |
| ACCGGGTACTCCGCAGGTAC+TGG | - | chr1_4:3848594-3848613 | None:intergenic | 65.0% | |
| ! | ACCTGCGGAGTACCCGGTAC+GGG | + | chr1_4:3848596-3848615 | Msa0144380:intron | 65.0% |
| ! | TAGCGGATAGCGGCGCGTAG+CGG | + | chr1_4:3849653-3849672 | Msa0144380:intron | 65.0% |
| ACCCGTACCGGGTACTCCGC+AGG | - | chr1_4:3848600-3848619 | None:intergenic | 70.0% | |
| CGCGCGGTGCAGTGCGGTAC+CGG | - | chr1_4:3850253-3850272 | None:intergenic | 75.0% | |
| CGGTACCGCACTGCACCGCG+CGG | + | chr1_4:3850251-3850270 | Msa0144380:intron | 75.0% | |
| CTGCACCGCGCGGCCGCTAT+TGG | + | chr1_4:3850261-3850280 | Msa0144380:intron | 75.0% | |
| AGCGGCCAATAGCGGCCGCG+CGG | - | chr1_4:3850269-3850288 | None:intergenic | 75.0% | |
| ! | AGCGGCCGCGCGGTGCAGTG+CGG | - | chr1_4:3850259-3850278 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 3846207 | 3852136 | 3846207 | ID=Msa0144380;Name=Msa0144380 |
| chr1_4 | mRNA | 3846207 | 3852136 | 3846207 | ID=Msa0144380-mRNA-1;Parent=Msa0144380;Name=Msa0144380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=175|1|1|1|1|0.66|3|436|392 |
| chr1_4 | exon | 3846207 | 3846387 | 3846207 | ID=Msa0144380-mRNA-1:exon:1538;Parent=Msa0144380-mRNA-1 |
| chr1_4 | exon | 3846808 | 3847737 | 3846808 | ID=Msa0144380-mRNA-1:exon:1539;Parent=Msa0144380-mRNA-1 |
| chr1_4 | exon | 3851458 | 3852136 | 3851458 | ID=Msa0144380-mRNA-1:exon:1540;Parent=Msa0144380-mRNA-1 |
| chr1_4 | five_prime_UTR | 3846207 | 3846381 | 3846207 | ID=Msa0144380-mRNA-1:five_prime_utr;Parent=Msa0144380-mRNA-1 |
| chr1_4 | CDS | 3846382 | 3846387 | 3846382 | ID=Msa0144380-mRNA-1:cds;Parent=Msa0144380-mRNA-1 |
| chr1_4 | CDS | 3846808 | 3847737 | 3846808 | ID=Msa0144380-mRNA-1:cds;Parent=Msa0144380-mRNA-1 |
| chr1_4 | CDS | 3851458 | 3851700 | 3851458 | ID=Msa0144380-mRNA-1:cds;Parent=Msa0144380-mRNA-1 |
| chr1_4 | three_prime_UTR | 3851701 | 3852136 | 3851701 | ID=Msa0144380-mRNA-1:three_prime_utr;Parent=Msa0144380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
