Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617310 | XP_013446515.1 | 97.455 | 668 | 17 | 0 | 1 | 668 | 1 | 668 | 0.0 | 1331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617310 | sp|O76094|SRP72_HUMAN | 31.098 | 656 | 422 | 13 | 21 | 660 | 14 | 655 | 1.18e-83 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0073210 | Msa0617310 | 0.830735 | 2.483674e-55 | -8.615850e-47 |
| Msa0121410 | Msa0617310 | 0.821090 | 4.856097e-53 | -8.615850e-47 |
| Msa0166070 | Msa0617310 | 0.824593 | 7.421516e-54 | -8.615850e-47 |
| Msa0371490 | Msa0617310 | 0.807521 | 4.853814e-50 | -8.615850e-47 |
| Msa0468660 | Msa0617310 | 0.802678 | 5.005054e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617310 | MtrunA17_Chr8g0376921 | 97.455 | 668 | 17 | 0 | 1 | 668 | 1 | 668 | 0.0 | 1331 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617310 | AT1G67680.1 | 63.374 | 658 | 215 | 6 | 1 | 642 | 1 | 648 | 0.0 | 790 |
| Msa0617310 | AT1G67650.1 | 57.781 | 649 | 252 | 6 | 1 | 642 | 1 | 634 | 0.0 | 753 |
Find 196 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTGGGAAGCCACCTTTC+TGG | 0.144780 | 4_2:-67779632 | None:intergenic |
| AATCTCAAAACCATCAATTT+TGG | 0.164599 | 4_2:+67779979 | Msa0617310:three_prime_UTR |
| GGTGGAGGACCTGGGTTTGC+AGG | 0.208255 | 4_2:-67779605 | None:intergenic |
| ATATATTGCTTCCCTTTCTT+TGG | 0.215445 | 4_2:-67778683 | None:intergenic |
| GAAGTTGCCTGGTTTGATTT+TGG | 0.230604 | 4_2:-67779773 | None:intergenic |
| TTTCGCATAAACGGCGATTC+AGG | 0.241559 | 4_2:-67775969 | None:intergenic |
| AGGATGGCTGGATTCATTTC+GGG | 0.250936 | 4_2:+67777609 | Msa0617310:CDS |
| GGGAAGCAATATATGCAAAT+AGG | 0.256001 | 4_2:+67778692 | Msa0617310:CDS |
| GAATGAAGCTTTGGAGTCTT+TGG | 0.268189 | 4_2:+67777411 | Msa0617310:CDS |
| AGACTATCAGAAACATCTTT+TGG | 0.278470 | 4_2:-67778583 | None:intergenic |
| TCTGGATCTGGTGGAGGACC+TGG | 0.280134 | 4_2:-67779614 | None:intergenic |
| GACAGCTTGGAGCGTACTTC+TGG | 0.283282 | 4_2:+67779461 | Msa0617310:CDS |
| GGCTGCGACTGCGTCGGTTT+GGG | 0.291056 | 4_2:-67776074 | None:intergenic |
| ATCATTGATTGGCAGCTTCT+TGG | 0.293542 | 4_2:+67778454 | Msa0617310:intron |
| AAGAAGTCTAGGAAGTAATA+AGG | 0.294799 | 4_2:+67779869 | Msa0617310:exon |
| AAGGATGGCTGGATTCATTT+CGG | 0.297450 | 4_2:+67777608 | Msa0617310:CDS |
| GTCTCCTATTGCTGTACAAT+TGG | 0.300746 | 4_2:+67778342 | Msa0617310:CDS |
| AAATGATGAAACTATGCTTT+TGG | 0.305228 | 4_2:+67777447 | Msa0617310:CDS |
| AGCTCGTTTGTCCTTCCTCT+TGG | 0.312324 | 4_2:-67779675 | None:intergenic |
| GCTCAGGTTGCGGCGGCGGC+TGG | 0.317288 | 4_2:+67779050 | Msa0617310:CDS |
| TGCCCGTCTTGATGTTATTA+AGG | 0.317488 | 4_2:+67779382 | Msa0617310:CDS |
| CTTTCCTTCGTCGTTCGTTT+CGG | 0.317730 | 4_2:-67779522 | None:intergenic |
| GGAAGCCACCTTTCTGGATC+TGG | 0.323233 | 4_2:-67779626 | None:intergenic |
| GACTGCGTCGGTTTGGGCTT+CGG | 0.340662 | 4_2:-67776068 | None:intergenic |
| CCCAGGTTCTTTACTTAGCC+AGG | 0.341545 | 4_2:+67779027 | Msa0617310:CDS |
| CTTCAATCGTTTCGCATAAA+CGG | 0.346283 | 4_2:-67775978 | None:intergenic |
| TTGAACTCGCATAGTGTATA+TGG | 0.351210 | 4_2:-67779958 | None:intergenic |
| TCATTGATTGGCAGCTTCTT+GGG | 0.354425 | 4_2:+67778455 | Msa0617310:intron |
| AGCAACAAGCAGCTTTGAAT+TGG | 0.358344 | 4_2:+67777636 | Msa0617310:CDS |
| CAGGGCTCAGGTTGCGGCGG+CGG | 0.362726 | 4_2:+67779046 | Msa0617310:CDS |
| AATTTCCAACATATCAATCT+TGG | 0.370710 | 4_2:-67777539 | None:intergenic |
| AGGCTGCGACTGCGTCGGTT+TGG | 0.372921 | 4_2:-67776075 | None:intergenic |
| GTTTGGGCTTCGGAGCCATT+AGG | 0.374566 | 4_2:-67776058 | None:intergenic |
| TTTCGGCAATTCAATCTTCT+CGG | 0.374802 | 4_2:+67776367 | Msa0617310:CDS |
| GAAATACTGGCACAGTTTGC+TGG | 0.375065 | 4_2:+67778987 | Msa0617310:CDS |
| TTGAATTGAACCAAAATTGA+TGG | 0.380792 | 4_2:-67779989 | None:intergenic |
| AAACAAGTTGAATGAAGCTT+TGG | 0.382642 | 4_2:+67777402 | Msa0617310:CDS |
| TTCTGTTGCTGCCTTAGTTA+TGG | 0.385921 | 4_2:+67777564 | Msa0617310:CDS |
| GCCGGCATGTGTTGAATATC+TGG | 0.386185 | 4_2:-67779110 | None:intergenic |
| TTTGCAGGGTTAAACCCTTT+AGG | 0.386343 | 4_2:-67779590 | None:intergenic |
| TCGATTTGGTGATGCTGTTT+CGG | 0.392201 | 4_2:+67776350 | Msa0617310:CDS |
| AATACTGGTACAACACTATC+AGG | 0.392818 | 4_2:-67778915 | None:intergenic |
| CTTAGCCAGGGCTCAGGTTG+CGG | 0.398955 | 4_2:+67779040 | Msa0617310:CDS |
| AGGGCAGCTTGCAGCAATAC+TGG | 0.399705 | 4_2:-67778930 | None:intergenic |
| CTGGATCTGGTGGAGGACCT+GGG | 0.400436 | 4_2:-67779613 | None:intergenic |
| TAGCCCAATTGTACAGCAAT+AGG | 0.402117 | 4_2:-67778346 | None:intergenic |
| TTTCCACCGCTGAAACCTAA+TGG | 0.402628 | 4_2:+67776043 | Msa0617310:exon |
| GCTCGTTTGTCCTTCCTCTT+GGG | 0.405630 | 4_2:-67779674 | None:intergenic |
| AAAGACCTTGCCTGGATTGA+AGG | 0.409184 | 4_2:+67779427 | Msa0617310:CDS |
| CCTAGACTTCTTTCTAGACT+TGG | 0.410339 | 4_2:-67779858 | None:intergenic |
| AAACGAGCTGCTCAAGTTAG+AGG | 0.410977 | 4_2:+67779689 | Msa0617310:CDS |
| GGAAGCAATATATGCAAATA+GGG | 0.413110 | 4_2:+67778693 | Msa0617310:CDS |
| GTTGCTGCCTTAGTTATGGC+AGG | 0.413143 | 4_2:+67777568 | Msa0617310:CDS |
| GAAGCTTCTGGTAGATATCC+AGG | 0.423941 | 4_2:-67777510 | None:intergenic |
| CGCCGCCGCAACCTGAGCCC+TGG | 0.424323 | 4_2:-67779045 | None:intergenic |
| TGCACTCTGAGTAGCACCTT+TGG | 0.425319 | 4_2:-67779798 | None:intergenic |
| TGGAAGGGCTGAGGAAATAC+TGG | 0.426397 | 4_2:+67778974 | Msa0617310:CDS |
| TGAAACTTTCAGCCAAAGAA+AGG | 0.427125 | 4_2:+67778671 | Msa0617310:CDS |
| GGACATGATTAAACGAGATA+TGG | 0.428299 | 4_2:+67778507 | Msa0617310:CDS |
| TCTCCTATTGCTGTACAATT+GGG | 0.428740 | 4_2:+67778343 | Msa0617310:CDS |
| AAAGTCCAAGATTGATATGT+TGG | 0.431327 | 4_2:+67777534 | Msa0617310:CDS |
| AGAGCCTGATGGAAGATAAC+TGG | 0.433802 | 4_2:+67778293 | Msa0617310:CDS |
| ATTGCTGCAAGCTGCCCTCT+TGG | 0.433939 | 4_2:+67778935 | Msa0617310:CDS |
| TGAGGAGCTCGTTAAAAGTC+AGG | 0.440388 | 4_2:+67779322 | Msa0617310:CDS |
| CACCTTTGGAGGAAGTTGCC+TGG | 0.447513 | 4_2:-67779784 | None:intergenic |
| TGGTATCTTTGTTAGAGAAT+CGG | 0.447976 | 4_2:-67779090 | None:intergenic |
| CTGCTTGTTCTTTAATTCAA+AGG | 0.451905 | 4_2:+67777668 | Msa0617310:CDS |
| CAAAGCTTTCGCCTAGCTCA+TGG | 0.456121 | 4_2:+67778640 | Msa0617310:CDS |
| TGCTGTAGTTAGAGATAAGC+AGG | 0.456566 | 4_2:+67779721 | Msa0617310:CDS |
| CAAGTGTTAATGTGCGTGTT+TGG | 0.457889 | 4_2:+67780040 | Msa0617310:three_prime_UTR |
| AGGCTGCCTCATTCAAGTTA+AGG | 0.458642 | 4_2:+67779267 | Msa0617310:CDS |
| GTGGAGGACCTGGGTTTGCA+GGG | 0.460700 | 4_2:-67779604 | None:intergenic |
| TCTAGACTTGGATGAAGGCT+TGG | 0.461224 | 4_2:-67779846 | None:intergenic |
| TTCGCATAAACGGCGATTCA+GGG | 0.462396 | 4_2:-67775968 | None:intergenic |
| TTGATCAAAGATGATCGATT+TGG | 0.465225 | 4_2:+67776336 | Msa0617310:CDS |
| AAAAGTTGACCTCTCTCGCT+TGG | 0.466137 | 4_2:-67779648 | None:intergenic |
| TTCTTTCTAGACTTGGATGA+AGG | 0.466315 | 4_2:-67779851 | None:intergenic |
| AATAATCTTGTTTCCCTGAA+AGG | 0.467300 | 4_2:+67778559 | Msa0617310:CDS |
| AAGAAACTAAAGACCTTGCC+TGG | 0.467453 | 4_2:+67779419 | Msa0617310:CDS |
| ATCTGAAGTTCAAGGATGGC+TGG | 0.467862 | 4_2:+67777597 | Msa0617310:CDS |
| TTGGATGAAGGCTTGGATGA+AGG | 0.468551 | 4_2:-67779839 | None:intergenic |
| CTTTCGCCTAGCTCATGGAT+TGG | 0.471476 | 4_2:+67778645 | Msa0617310:CDS |
| ATTGTTCTAACTGCTTAATG+AGG | 0.476672 | 4_2:-67780117 | None:intergenic |
| TGCTCAAGTTAGAGGCTCAC+AGG | 0.477514 | 4_2:+67779697 | Msa0617310:CDS |
| GAAAGCCAAGGTATCCTAAA+GGG | 0.478236 | 4_2:+67779576 | Msa0617310:CDS |
| ATCTGTGAGTTTAACGGCAT+TGG | 0.478729 | 4_2:-67776165 | None:intergenic |
| TAAAGAACCTGGGACTTCTC+AGG | 0.480535 | 4_2:-67779017 | None:intergenic |
| ACAATTGGGCTATGTCCAAC+AGG | 0.482796 | 4_2:+67778357 | Msa0617310:CDS |
| CGGAGTGCGTCTTCATCGCC+AGG | 0.485851 | 4_2:-67776297 | None:intergenic |
| TCTTTACTTAGCCAGGGCTC+AGG | 0.490874 | 4_2:+67779034 | Msa0617310:CDS |
| ACTCTGATCTGTGAGTTTAA+CGG | 0.491445 | 4_2:-67776171 | None:intergenic |
| CAGGCCAGTTATCTTCCATC+AGG | 0.491778 | 4_2:-67778297 | None:intergenic |
| AAAGTTGACCTCTCTCGCTT+GGG | 0.493251 | 4_2:-67779647 | None:intergenic |
| AGCCACCTTTCTGGATCTGG+TGG | 0.495160 | 4_2:-67779623 | None:intergenic |
| TCTGGAGTTAAACAAGTTGA+GGG | 0.499079 | 4_2:+67779479 | Msa0617310:CDS |
| TCTTCGAGTGGAGGTGGAGC+GGG | 0.502009 | 4_2:-67776098 | None:intergenic |
| TGAAGGCTTGGATGAAGGCT+TGG | 0.502378 | 4_2:-67779834 | None:intergenic |
| TTCTGGAGTTAAACAAGTTG+AGG | 0.502597 | 4_2:+67779478 | Msa0617310:CDS |
| CCAAGTCTAGAAAGAAGTCT+AGG | 0.505506 | 4_2:+67779858 | Msa0617310:CDS |
| CTCAGCAACAACCACTGTTA+CGG | 0.506217 | 4_2:+67776007 | Msa0617310:five_prime_UTR |
| TTAAACCCTTTAGGATACCT+TGG | 0.508195 | 4_2:-67779581 | None:intergenic |
| CACCTTTCTGGATCTGGTGG+AGG | 0.508999 | 4_2:-67779620 | None:intergenic |
| TGATCTCCCTGCCATAACTA+AGG | 0.509736 | 4_2:-67777575 | None:intergenic |
| TTGCTGCTTTCAATTACTGA+GGG | 0.509780 | 4_2:+67779934 | Msa0617310:three_prime_UTR |
| CGTAACAGTGGTTGTTGCTG+AGG | 0.511235 | 4_2:-67776006 | None:intergenic |
| AGATGCTATTGAAGCTTATG+TGG | 0.514106 | 4_2:+67778486 | Msa0617310:CDS |
| CATTGGTGAATGCGGAAGCT+TGG | 0.514363 | 4_2:-67776148 | None:intergenic |
| AATAGATCTTCGAGTGGAGG+TGG | 0.517073 | 4_2:-67776104 | None:intergenic |
| GGGAATTGATGTGGACAGCT+TGG | 0.519634 | 4_2:+67779448 | Msa0617310:CDS |
| ACACTATCAGGAAACATGTC+TGG | 0.519719 | 4_2:-67778903 | None:intergenic |
| GAAACTTTCAGCCAAAGAAA+GGG | 0.519940 | 4_2:+67778672 | Msa0617310:CDS |
| CCAGGTTCTTTACTTAGCCA+GGG | 0.523348 | 4_2:+67779028 | Msa0617310:CDS |
| ACAAGGGTGGCAACAGTAGC+CGG | 0.524474 | 4_2:-67779128 | None:intergenic |
| GAAGCATAGAAGCACTAGTT+GGG | 0.524707 | 4_2:+67779345 | Msa0617310:CDS |
| AGCTGCACCCTCAACGTCGT+TGG | 0.527024 | 4_2:-67779168 | None:intergenic |
| ATCTTCTCGGTCTCCTCCTG+AGG | 0.529120 | 4_2:+67776380 | Msa0617310:CDS |
| GAACGAGCCAACGACGTTGA+GGG | 0.529678 | 4_2:+67779161 | Msa0617310:CDS |
| AGAGAATCGGCTGCAATATG+TGG | 0.533632 | 4_2:-67779077 | None:intergenic |
| AGAAAGCCAAGGTATCCTAA+AGG | 0.536400 | 4_2:+67779575 | Msa0617310:CDS |
| TTGGATGTGTTTGTTGAGAG+TGG | 0.536512 | 4_2:-67776129 | None:intergenic |
| ACATCAATTCCCTTCAATCC+AGG | 0.536875 | 4_2:-67779437 | None:intergenic |
| TCCATGCCTTAACTTGAATG+AGG | 0.536971 | 4_2:-67779273 | None:intergenic |
| GTTAGAGATAAGCAGGAAGC+TGG | 0.537836 | 4_2:+67779728 | Msa0617310:CDS |
| TTGGTTAGAGAGAACAAAGC+TGG | 0.538133 | 4_2:+67778954 | Msa0617310:CDS |
| GGAAGCATAGAAGCACTAGT+TGG | 0.539640 | 4_2:+67779344 | Msa0617310:CDS |
| CATTCAAGTTAAGGCATGGA+AGG | 0.544217 | 4_2:+67779276 | Msa0617310:CDS |
| CCCTGGCTAAGTAAAGAACC+TGG | 0.544789 | 4_2:-67779028 | None:intergenic |
| GCATGCTGCTAAACTCTATG+AGG | 0.544889 | 4_2:+67779304 | Msa0617310:CDS |
| AACTGCAATGGACGATTCAT+CGG | 0.545482 | 4_2:-67778530 | None:intergenic |
| AGAACGAGCCAACGACGTTG+AGG | 0.546494 | 4_2:+67779160 | Msa0617310:CDS |
| AGCTCTTGTTGTCCGCCCGA+AGG | 0.549212 | 4_2:+67777713 | Msa0617310:CDS |
| TTGCTGCCTTAGTTATGGCA+GGG | 0.553077 | 4_2:+67777569 | Msa0617310:CDS |
| GCGGGAGGCTGCGACTGCGT+CGG | 0.553576 | 4_2:-67776080 | None:intergenic |
| GCCTCATTCAAGTTAAGGCA+TGG | 0.556079 | 4_2:+67779272 | Msa0617310:CDS |
| AAGACCTTGCCTGGATTGAA+GGG | 0.556211 | 4_2:+67779428 | Msa0617310:CDS |
| TTGTTCTAACTGCTTAATGA+GGG | 0.556776 | 4_2:-67780116 | None:intergenic |
| GTTGCTGCTTTCAATTACTG+AGG | 0.557540 | 4_2:+67779933 | Msa0617310:three_prime_UTR |
| GTAACAGTGGTTGTTGCTGA+GGG | 0.557553 | 4_2:-67776005 | None:intergenic |
| AAATGAGTATATTTGTCTAT+CGG | 0.557558 | 4_2:+67780014 | Msa0617310:three_prime_UTR |
| GCAGTTCTCGCAATTGCACC+TGG | 0.562226 | 4_2:+67776279 | Msa0617310:intron |
| ACTCTGAGTAGCACCTTTGG+AGG | 0.562248 | 4_2:-67779795 | None:intergenic |
| TCAAGTCCAATCCATGAGCT+AGG | 0.562856 | 4_2:-67778651 | None:intergenic |
| TCGCATAAACGGCGATTCAG+GGG | 0.563791 | 4_2:-67775967 | None:intergenic |
| GAACAAAGCTGGAAGGGCTG+AGG | 0.564078 | 4_2:+67778965 | Msa0617310:CDS |
| TGCCTTAATAACATCAAGAC+GGG | 0.570587 | 4_2:-67779384 | None:intergenic |
| TCGAGTGGAGGTGGAGCGGG+AGG | 0.571792 | 4_2:-67776095 | None:intergenic |
| ATTATTGACTGCAACTGCAA+TGG | 0.572155 | 4_2:-67778542 | None:intergenic |
| ATAGTCTGAAGAAACTTGAT+CGG | 0.576762 | 4_2:+67778599 | Msa0617310:CDS |
| GTTGAGGGTCCTCTTCATGC+AGG | 0.576924 | 4_2:+67779494 | Msa0617310:CDS |
| GTCCTCCACCAGATCCAGAA+AGG | 0.583333 | 4_2:+67779618 | Msa0617310:CDS |
| GGGAGATCATCTGAAGTTCA+AGG | 0.584389 | 4_2:+67777589 | Msa0617310:CDS |
| GCTTAATATTATAATGCAAG+AGG | 0.584885 | 4_2:+67779247 | Msa0617310:CDS |
| GGTGGCTTCCCAAGCGAGAG+AGG | 0.586065 | 4_2:+67779639 | Msa0617310:CDS |
| TAGAGAGAACAAAGCTGGAA+GGG | 0.591318 | 4_2:+67778959 | Msa0617310:CDS |
| TTGATTCTGCAACCAAGTGG+TGG | 0.591734 | 4_2:+67779198 | Msa0617310:CDS |
| ATCTTCGAGTGGAGGTGGAG+CGG | 0.593310 | 4_2:-67776099 | None:intergenic |
| ACCAGATATTCAACACATGC+CGG | 0.597220 | 4_2:+67779109 | Msa0617310:CDS |
| TCATGCCAACAGGATTGACC+AGG | 0.597296 | 4_2:+67778729 | Msa0617310:CDS |
| AAAGTTGCCTGAGAAGTCCC+AGG | 0.599008 | 4_2:+67779010 | Msa0617310:CDS |
| TTTAACGGCATTGGTGAATG+CGG | 0.600801 | 4_2:-67776156 | None:intergenic |
| AAAGACCTGGTCAATCCTGT+TGG | 0.600900 | 4_2:-67778734 | None:intergenic |
| AGCCAGGGCTCAGGTTGCGG+CGG | 0.605720 | 4_2:+67779043 | Msa0617310:CDS |
| GGGTTTAACCCTGCAAACCC+AGG | 0.606815 | 4_2:+67779596 | Msa0617310:CDS |
| AACCAGGCAACTTCCTCCAA+AGG | 0.608012 | 4_2:+67779782 | Msa0617310:CDS |
| TTAGAGAGAACAAAGCTGGA+AGG | 0.608924 | 4_2:+67778958 | Msa0617310:CDS |
| CTGCCTTAATAACATCAAGA+CGG | 0.615547 | 4_2:-67779385 | None:intergenic |
| TCGGAGCCATTAGGTTTCAG+CGG | 0.618372 | 4_2:-67776049 | None:intergenic |
| GAGAATCGGCTGCAATATGT+GGG | 0.621190 | 4_2:-67779076 | None:intergenic |
| CATAGCATTAGACCACCACT+TGG | 0.621895 | 4_2:-67779210 | None:intergenic |
| TCGGCAACACCTGCATGAAG+AGG | 0.622400 | 4_2:-67779503 | None:intergenic |
| AAACCACATATCTTCCACTT+CGG | 0.624007 | 4_2:+67775928 | None:intergenic |
| AATTGGTCAAGAGAGCCTGA+TGG | 0.624372 | 4_2:+67778282 | Msa0617310:CDS |
| AAAAGAGAAAGAGAAAGCCA+AGG | 0.626179 | 4_2:+67779564 | Msa0617310:CDS |
| TTTGTTCTCTCTAACCAAGA+GGG | 0.627104 | 4_2:-67778949 | None:intergenic |
| TGTTCTAACTGCTTAATGAG+GGG | 0.627140 | 4_2:-67780115 | None:intergenic |
| TGCTTGATTCTGCAACCAAG+TGG | 0.627939 | 4_2:+67779195 | Msa0617310:CDS |
| GATCATCTGAAGTTCAAGGA+TGG | 0.631439 | 4_2:+67777593 | Msa0617310:CDS |
| TTCCAATCCAAAATCAAACC+AGG | 0.634307 | 4_2:+67779766 | Msa0617310:CDS |
| TGGATTGAAGGGAATTGATG+TGG | 0.636123 | 4_2:+67779439 | Msa0617310:CDS |
| ATTCAAGTTAAGGCATGGAA+GGG | 0.638452 | 4_2:+67779277 | Msa0617310:CDS |
| GAGCCATTAGGTTTCAGCGG+TGG | 0.639146 | 4_2:-67776046 | None:intergenic |
| GCTCAAGTTAGAGGCTCACA+GGG | 0.642165 | 4_2:+67779698 | Msa0617310:CDS |
| GAGGAGCTCGTTAAAAGTCA+GGG | 0.645289 | 4_2:+67779323 | Msa0617310:CDS |
| GTGAATAGATCTTCGAGTGG+AGG | 0.646165 | 4_2:-67776107 | None:intergenic |
| CCTGGCTAAGTAAAGAACCT+GGG | 0.646230 | 4_2:-67779027 | None:intergenic |
| AGAATAGAGAAACGCCGAAG+TGG | 0.648464 | 4_2:-67775942 | None:intergenic |
| AATTCCCTTCAATCCAGGCA+AGG | 0.648744 | 4_2:-67779432 | None:intergenic |
| CTCCACCAGATCCAGAAAGG+TGG | 0.653977 | 4_2:+67779621 | Msa0617310:CDS |
| CTTTGTTCTCTCTAACCAAG+AGG | 0.654169 | 4_2:-67778950 | None:intergenic |
| GTGGTCTAATGCTATGACTG+AGG | 0.668030 | 4_2:+67779217 | Msa0617310:CDS |
| TCAACGCAACGATCTTGCAT+CGG | 0.668802 | 4_2:-67776317 | None:intergenic |
| AAACAGTATCACCGTAACAG+TGG | 0.670667 | 4_2:-67776018 | None:intergenic |
| AATCGGCTGCAATATGTGGG+TGG | 0.683879 | 4_2:-67779073 | None:intergenic |
| GTGGTGAATAGATCTTCGAG+TGG | 0.684779 | 4_2:-67776110 | None:intergenic |
| GTTGCCGAAACGAACGACGA+AGG | 0.686534 | 4_2:+67779518 | Msa0617310:CDS |
| AATATCACATCACCTTCGGG+CGG | 0.714098 | 4_2:-67777725 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTATTATTATTATA+TGG | + | chr4_2:67778838-67778857 | Msa0617310:intron | 0.0% |
| !! | TTGCTTATTATATTTATATA+AGG | + | chr4_2:67776526-67776545 | Msa0617310:intron | 10.0% |
| !! | ATATAAATCATTTGTATATA+CGG | + | chr4_2:67777090-67777109 | Msa0617310:intron | 10.0% |
| !! | ATATTATATATGTATATACA+GGG | - | chr4_2:67777256-67777275 | None:intergenic | 10.0% |
| !! | AAATAAATTTATGACTTAAT+AGG | - | chr4_2:67778207-67778226 | None:intergenic | 10.0% |
| !! | ATCAATGAATTGAAATTAAA+AGG | - | chr4_2:67776217-67776236 | None:intergenic | 15.0% |
| !!! | AATTTAAAAGTTTTAACCAA+CGG | + | chr4_2:67776620-67776639 | Msa0617310:intron | 15.0% |
| !!! | ACAATATAACATTTTTTACA+CGG | - | chr4_2:67776939-67776958 | None:intergenic | 15.0% |
| !! | AATGGTTAATATTATAAACA+TGG | - | chr4_2:67777150-67777169 | None:intergenic | 15.0% |
| !! | CATATTATATATGTATATAC+AGG | - | chr4_2:67777257-67777276 | None:intergenic | 15.0% |
| !!! | TTACTTTGTTGTTTTTAAAT+AGG | + | chr4_2:67777360-67777379 | Msa0617310:intron | 15.0% |
| !!! | AAAATATCTGAAGTAAATTT+GGG | - | chr4_2:67777775-67777794 | None:intergenic | 15.0% |
| !!! | TATATTTTTTCTATCAGAAT+TGG | + | chr4_2:67778265-67778284 | Msa0617310:intron | 15.0% |
| !! | TTAAAAAAATGAAAATCCTC+AGG | - | chr4_2:67776399-67776418 | None:intergenic | 20.0% |
| !!! | TGAGGATTTTCATTTTTTTA+AGG | + | chr4_2:67776398-67776417 | Msa0617310:CDS | 20.0% |
| !! | AATATAGTTTATGACAAAAC+AGG | - | chr4_2:67776663-67776682 | None:intergenic | 20.0% |
| !! | TTATTCATCGAATTATGAAA+TGG | + | chr4_2:67776818-67776837 | Msa0617310:intron | 20.0% |
| !! | ACAAAGTAAAAAATAATCGA+TGG | - | chr4_2:67777349-67777368 | None:intergenic | 20.0% |
| !!! | GAAAATATCTGAAGTAAATT+TGG | - | chr4_2:67777776-67777795 | None:intergenic | 20.0% |
| !!! | ATTTACTTCAGATATTTTCA+TGG | + | chr4_2:67777777-67777796 | Msa0617310:intron | 20.0% |
| !!! | TTTACTTCAGATATTTTCAT+GGG | + | chr4_2:67777778-67777797 | Msa0617310:intron | 20.0% |
| !! | ATTGAATATTTGAATAGTGT+TGG | - | chr4_2:67777848-67777867 | None:intergenic | 20.0% |
| !! | TAAGTCATAAATTTATTTCC+TGG | + | chr4_2:67778209-67778228 | Msa0617310:intron | 20.0% |
| !! | AAGTCATAAATTTATTTCCT+GGG | + | chr4_2:67778210-67778229 | Msa0617310:intron | 20.0% |
| !!! | AGTTTTAATCAATCATTGAT+TGG | + | chr4_2:67778443-67778462 | Msa0617310:intron | 20.0% |
| !! | AAATGAGTATATTTGTCTAT+CGG | + | chr4_2:67780014-67780033 | Msa0617310:three_prime_UTR | 20.0% |
| !!! | AAGCTCTAAAATAAGTCAAT+CGG | - | chr4_2:67776558-67776577 | None:intergenic | 25.0% |
| !! | CAAAATAAGCCTTATACAAA+CGG | + | chr4_2:67776744-67776763 | Msa0617310:intron | 25.0% |
| !! | AAAATAAGCCTTATACAAAC+GGG | + | chr4_2:67776745-67776764 | Msa0617310:intron | 25.0% |
| ! | GTGTTAAAAAATAGACATAG+AGG | - | chr4_2:67777177-67777196 | None:intergenic | 25.0% |
| !! | AAATGATGAAACTATGCTTT+TGG | + | chr4_2:67777447-67777466 | Msa0617310:CDS | 25.0% |
| ! | AATTTCCAACATATCAATCT+TGG | - | chr4_2:67777542-67777561 | None:intergenic | 25.0% |
| !!! | TGATGTGATATTTTGATTGT+GGG | + | chr4_2:67777736-67777755 | Msa0617310:intron | 25.0% |
| ! | AAGTTCCTTATTGTAAAACA+TGG | + | chr4_2:67778115-67778134 | Msa0617310:intron | 25.0% |
| !! | TTTGTCCATGTTTTACAATA+AGG | - | chr4_2:67778123-67778142 | None:intergenic | 25.0% |
| !! | TACAATCAAATGTTGTTTGT+CGG | + | chr4_2:67778154-67778173 | Msa0617310:intron | 25.0% |
| !! | TCATTTTCTATATCTTCATC+AGG | - | chr4_2:67778319-67778338 | None:intergenic | 25.0% |
| ! | GATATATGACTGATGATTTA+AGG | - | chr4_2:67778775-67778794 | None:intergenic | 25.0% |
| ! | GCTTAATATTATAATGCAAG+AGG | + | chr4_2:67779247-67779266 | Msa0617310:CDS | 25.0% |
| !! | AATCTCAAAACCATCAATTT+TGG | + | chr4_2:67779979-67779998 | Msa0617310:three_prime_UTR | 25.0% |
| ! | TTGAATTGAACCAAAATTGA+TGG | - | chr4_2:67779992-67780011 | None:intergenic | 25.0% |
| TTGATCAAAGATGATCGATT+TGG | + | chr4_2:67776336-67776355 | Msa0617310:CDS | 30.0% | |
| AAAAAATGAAAATCCTCAGG+AGG | - | chr4_2:67776396-67776415 | None:intergenic | 30.0% | |
| TGAAATTCAGAATTAGAGCT+AGG | + | chr4_2:67776468-67776487 | Msa0617310:intron | 30.0% | |
| TAAAATAAGTCAATCGGAAC+GGG | - | chr4_2:67776552-67776571 | None:intergenic | 30.0% | |
| CTAAAATAAGTCAATCGGAA+CGG | - | chr4_2:67776553-67776572 | None:intergenic | 30.0% | |
| TATGAAGATACAATTTCCGT+TGG | - | chr4_2:67776639-67776658 | None:intergenic | 30.0% | |
| ! | GAATTATGAAATGGAAGCAT+GGG | + | chr4_2:67776827-67776846 | Msa0617310:intron | 30.0% |
| ! | AATTATGAAATGGAAGCATG+GGG | + | chr4_2:67776828-67776847 | Msa0617310:intron | 30.0% |
| GAACTCTAGTAGTAGATATT+AGG | + | chr4_2:67776863-67776882 | Msa0617310:intron | 30.0% | |
| ACAAAATTAGTTCATGCACA+TGG | - | chr4_2:67776890-67776909 | None:intergenic | 30.0% | |
| ATCATTTGTATATACGGAAG+TGG | + | chr4_2:67777096-67777115 | Msa0617310:intron | 30.0% | |
| AATAGACATAGAGGATTGAA+TGG | - | chr4_2:67777168-67777187 | None:intergenic | 30.0% | |
| !! | AATTTTGGTCATGCATCTTT+TGG | - | chr4_2:67777214-67777233 | None:intergenic | 30.0% |
| CATGTCATAGAAAACTTTGT+TGG | + | chr4_2:67777294-67777313 | Msa0617310:intron | 30.0% | |
| GAAAACTTTGTTGGAGTTTA+TGG | + | chr4_2:67777303-67777322 | Msa0617310:intron | 30.0% | |
| ! | AAACAAGTTGAATGAAGCTT+TGG | + | chr4_2:67777402-67777421 | Msa0617310:CDS | 30.0% |
| ! | TCTCAAATTTTGTATCGTCT+TGG | + | chr4_2:67777472-67777491 | Msa0617310:CDS | 30.0% |
| TTTGTATCGTCTTGGAAAAA+TGG | + | chr4_2:67777480-67777499 | Msa0617310:CDS | 30.0% | |
| AAAGTCCAAGATTGATATGT+TGG | + | chr4_2:67777534-67777553 | Msa0617310:CDS | 30.0% | |
| CTGCTTGTTCTTTAATTCAA+AGG | + | chr4_2:67777668-67777687 | Msa0617310:CDS | 30.0% | |
| TCAAAATATCACATCACCTT+CGG | - | chr4_2:67777732-67777751 | None:intergenic | 30.0% | |
| !!! | GTGATGTGATATTTTGATTG+TGG | + | chr4_2:67777735-67777754 | Msa0617310:intron | 30.0% |
| TCATAAATTTATTTCCTGGG+AGG | + | chr4_2:67778213-67778232 | Msa0617310:intron | 30.0% | |
| ! | AATAATCTTGTTTCCCTGAA+AGG | + | chr4_2:67778559-67778578 | Msa0617310:CDS | 30.0% |
| ! | AGACTATCAGAAACATCTTT+TGG | - | chr4_2:67778586-67778605 | None:intergenic | 30.0% |
| ATAGTCTGAAGAAACTTGAT+CGG | + | chr4_2:67778599-67778618 | Msa0617310:CDS | 30.0% | |
| ATATATTGCTTCCCTTTCTT+TGG | - | chr4_2:67778686-67778705 | None:intergenic | 30.0% | |
| GGAAGCAATATATGCAAATA+GGG | + | chr4_2:67778693-67778712 | Msa0617310:CDS | 30.0% | |
| TGGTATCTTTGTTAGAGAAT+CGG | - | chr4_2:67779093-67779112 | None:intergenic | 30.0% | |
| !! | TCGTTCTTTTAAAGACACAA+GGG | - | chr4_2:67779147-67779166 | None:intergenic | 30.0% |
| AAGAAGTCTAGGAAGTAATA+AGG | + | chr4_2:67779869-67779888 | Msa0617310:exon | 30.0% | |
| CTTCAATCGTTTCGCATAAA+CGG | - | chr4_2:67775981-67776000 | None:intergenic | 35.0% | |
| ACTCTGATCTGTGAGTTTAA+CGG | - | chr4_2:67776174-67776193 | None:intergenic | 35.0% | |
| TTTCGGCAATTCAATCTTCT+CGG | + | chr4_2:67776367-67776386 | Msa0617310:CDS | 35.0% | |
| TTCAGAATTAGAGCTAGGAT+AGG | + | chr4_2:67776473-67776492 | Msa0617310:intron | 35.0% | |
| TCAGAATTAGAGCTAGGATA+GGG | + | chr4_2:67776474-67776493 | Msa0617310:intron | 35.0% | |
| TTAGTACACCCGTTTGTATA+AGG | - | chr4_2:67776756-67776775 | None:intergenic | 35.0% | |
| TACAAACGGGTGTACTAAAT+TGG | + | chr4_2:67776758-67776777 | Msa0617310:intron | 35.0% | |
| TGTACTAAATTGGAGAGAGA+AGG | + | chr4_2:67776768-67776787 | Msa0617310:intron | 35.0% | |
| AGAGAGAAGGTGATAGTTTA+GGG | + | chr4_2:67776781-67776800 | Msa0617310:intron | 35.0% | |
| CGAATTATGAAATGGAAGCA+TGG | + | chr4_2:67776826-67776845 | Msa0617310:intron | 35.0% | |
| TGCATGACCAAAATTGAACA+TGG | + | chr4_2:67777219-67777238 | Msa0617310:intron | 35.0% | |
| GCATGACCAAAATTGAACAT+GGG | + | chr4_2:67777220-67777239 | Msa0617310:intron | 35.0% | |
| CATGACCAAAATTGAACATG+GGG | + | chr4_2:67777221-67777240 | Msa0617310:intron | 35.0% | |
| ATGACCAAAATTGAACATGG+GGG | + | chr4_2:67777222-67777241 | Msa0617310:intron | 35.0% | |
| ! | AATTCCCCCATGTTCAATTT+TGG | - | chr4_2:67777229-67777248 | None:intergenic | 35.0% |
| CAAAATATCACATCACCTTC+GGG | - | chr4_2:67777731-67777750 | None:intergenic | 35.0% | |
| AAACACATACTCGTGAAGTT+TGG | - | chr4_2:67777972-67777991 | None:intergenic | 35.0% | |
| ! | CACGAAGCATCTATTACTAA+TGG | - | chr4_2:67778064-67778083 | None:intergenic | 35.0% |
| TCTCCTATTGCTGTACAATT+GGG | + | chr4_2:67778343-67778362 | Msa0617310:CDS | 35.0% | |
| AGATGCTATTGAAGCTTATG+TGG | + | chr4_2:67778486-67778505 | Msa0617310:CDS | 35.0% | |
| GGACATGATTAAACGAGATA+TGG | + | chr4_2:67778507-67778526 | Msa0617310:CDS | 35.0% | |
| ! | ATTATTGACTGCAACTGCAA+TGG | - | chr4_2:67778545-67778564 | None:intergenic | 35.0% |
| ! | AACATCTTTTGGACCTTTCA+GGG | - | chr4_2:67778575-67778594 | None:intergenic | 35.0% |
| ! | AAACATCTTTTGGACCTTTC+AGG | - | chr4_2:67778576-67778595 | None:intergenic | 35.0% |
| TGAAACTTTCAGCCAAAGAA+AGG | + | chr4_2:67778671-67778690 | Msa0617310:CDS | 35.0% | |
| GAAACTTTCAGCCAAAGAAA+GGG | + | chr4_2:67778672-67778691 | Msa0617310:CDS | 35.0% | |
| GGGAAGCAATATATGCAAAT+AGG | + | chr4_2:67778692-67778711 | Msa0617310:CDS | 35.0% | |
| AAGAAGACAGATAAAAGACC+TGG | - | chr4_2:67778750-67778769 | None:intergenic | 35.0% | |
| AATACTGGTACAACACTATC+AGG | - | chr4_2:67778918-67778937 | None:intergenic | 35.0% | |
| TTTGTTCTCTCTAACCAAGA+GGG | - | chr4_2:67778952-67778971 | None:intergenic | 35.0% | |
| !! | TTCTTTTAAAGACACAAGGG+TGG | - | chr4_2:67779144-67779163 | None:intergenic | 35.0% |
| !! | CTCGTTCTTTTAAAGACACA+AGG | - | chr4_2:67779148-67779167 | None:intergenic | 35.0% |
| ! | ATTCAAGTTAAGGCATGGAA+GGG | + | chr4_2:67779277-67779296 | Msa0617310:CDS | 35.0% |
| TGCCTTAATAACATCAAGAC+GGG | - | chr4_2:67779387-67779406 | None:intergenic | 35.0% | |
| CTGCCTTAATAACATCAAGA+CGG | - | chr4_2:67779388-67779407 | None:intergenic | 35.0% | |
| !! | TTCTGGAGTTAAACAAGTTG+AGG | + | chr4_2:67779478-67779497 | Msa0617310:CDS | 35.0% |
| ! | TCTGGAGTTAAACAAGTTGA+GGG | + | chr4_2:67779479-67779498 | Msa0617310:CDS | 35.0% |
| AAAAGAGAAAGAGAAAGCCA+AGG | + | chr4_2:67779564-67779583 | Msa0617310:CDS | 35.0% | |
| !! | TTAAACCCTTTAGGATACCT+TGG | - | chr4_2:67779584-67779603 | None:intergenic | 35.0% |
| !! | TGATTTTGGATTGGAATGAC+TGG | - | chr4_2:67779762-67779781 | None:intergenic | 35.0% |
| TTCCAATCCAAAATCAAACC+AGG | + | chr4_2:67779766-67779785 | Msa0617310:CDS | 35.0% | |
| TTCTTTCTAGACTTGGATGA+AGG | - | chr4_2:67779854-67779873 | None:intergenic | 35.0% | |
| !! | TTGCTGCTTTCAATTACTGA+GGG | + | chr4_2:67779934-67779953 | Msa0617310:three_prime_UTR | 35.0% |
| TTGAACTCGCATAGTGTATA+TGG | - | chr4_2:67779961-67779980 | None:intergenic | 35.0% | |
| AAACAGTATCACCGTAACAG+TGG | - | chr4_2:67776021-67776040 | None:intergenic | 40.0% | |
| ! | TTGGATGTGTTTGTTGAGAG+TGG | - | chr4_2:67776132-67776151 | None:intergenic | 40.0% |
| !! | TTTAACGGCATTGGTGAATG+CGG | - | chr4_2:67776159-67776178 | None:intergenic | 40.0% |
| ATCTGTGAGTTTAACGGCAT+TGG | - | chr4_2:67776168-67776187 | None:intergenic | 40.0% | |
| !! | TCGATTTGGTGATGCTGTTT+CGG | + | chr4_2:67776350-67776369 | Msa0617310:CDS | 40.0% |
| AGCTAGGATAGGGTAATTGA+TGG | + | chr4_2:67776484-67776503 | Msa0617310:intron | 40.0% | |
| GAGAGAGAAGGTGATAGTTT+AGG | + | chr4_2:67776780-67776799 | Msa0617310:intron | 40.0% | |
| !! | GAATGAAGCTTTGGAGTCTT+TGG | + | chr4_2:67777411-67777430 | Msa0617310:CDS | 40.0% |
| !!! | TCTTGGACTTTTGAAGCTTC+TGG | - | chr4_2:67777525-67777544 | None:intergenic | 40.0% |
| TTCTGTTGCTGCCTTAGTTA+TGG | + | chr4_2:67777564-67777583 | Msa0617310:CDS | 40.0% | |
| ! | GATCATCTGAAGTTCAAGGA+TGG | + | chr4_2:67777593-67777612 | Msa0617310:CDS | 40.0% |
| AAGGATGGCTGGATTCATTT+CGG | + | chr4_2:67777608-67777627 | Msa0617310:CDS | 40.0% | |
| !! | AGCAACAAGCAGCTTTGAAT+TGG | + | chr4_2:67777636-67777655 | Msa0617310:CDS | 40.0% |
| GTTTGCAAGTCAAGTGTGAT+TGG | + | chr4_2:67778083-67778102 | Msa0617310:intron | 40.0% | |
| GTCTCCTATTGCTGTACAAT+TGG | + | chr4_2:67778342-67778361 | Msa0617310:CDS | 40.0% | |
| TAGCCCAATTGTACAGCAAT+AGG | - | chr4_2:67778349-67778368 | None:intergenic | 40.0% | |
| AAATCAGAACTCCTACCTGT+TGG | - | chr4_2:67778375-67778394 | None:intergenic | 40.0% | |
| ! | ATCATTGATTGGCAGCTTCT+TGG | + | chr4_2:67778454-67778473 | Msa0617310:intron | 40.0% |
| ! | TCATTGATTGGCAGCTTCTT+GGG | + | chr4_2:67778455-67778474 | Msa0617310:intron | 40.0% |
| AACTGCAATGGACGATTCAT+CGG | - | chr4_2:67778533-67778552 | None:intergenic | 40.0% | |
| ! | TTTTGCTTCTTCATGCCAAC+AGG | + | chr4_2:67778719-67778738 | Msa0617310:CDS | 40.0% |
| ATGGTTACATCGCAATCTGT+AGG | + | chr4_2:67778857-67778876 | Msa0617310:intron | 40.0% | |
| ACACTATCAGGAAACATGTC+TGG | - | chr4_2:67778906-67778925 | None:intergenic | 40.0% | |
| CTTTGTTCTCTCTAACCAAG+AGG | - | chr4_2:67778953-67778972 | None:intergenic | 40.0% | |
| TTGGTTAGAGAGAACAAAGC+TGG | + | chr4_2:67778954-67778973 | Msa0617310:CDS | 40.0% | |
| TTAGAGAGAACAAAGCTGGA+AGG | + | chr4_2:67778958-67778977 | Msa0617310:CDS | 40.0% | |
| TAGAGAGAACAAAGCTGGAA+GGG | + | chr4_2:67778959-67778978 | Msa0617310:CDS | 40.0% | |
| ACCAGATATTCAACACATGC+CGG | + | chr4_2:67779109-67779128 | Msa0617310:CDS | 40.0% | |
| ! | TCCATGCCTTAACTTGAATG+AGG | - | chr4_2:67779276-67779295 | None:intergenic | 40.0% |
| ! | CATTCAAGTTAAGGCATGGA+AGG | + | chr4_2:67779276-67779295 | Msa0617310:CDS | 40.0% |
| !! | GAAGCATAGAAGCACTAGTT+GGG | + | chr4_2:67779345-67779364 | Msa0617310:CDS | 40.0% |
| TGCCCGTCTTGATGTTATTA+AGG | + | chr4_2:67779382-67779401 | Msa0617310:CDS | 40.0% | |
| AAGAAACTAAAGACCTTGCC+TGG | + | chr4_2:67779419-67779438 | Msa0617310:CDS | 40.0% | |
| ACATCAATTCCCTTCAATCC+AGG | - | chr4_2:67779440-67779459 | None:intergenic | 40.0% | |
| TGGATTGAAGGGAATTGATG+TGG | + | chr4_2:67779439-67779458 | Msa0617310:CDS | 40.0% | |
| ! | AGAAAGCCAAGGTATCCTAA+AGG | + | chr4_2:67779575-67779594 | Msa0617310:CDS | 40.0% |
| ! | GAAAGCCAAGGTATCCTAAA+GGG | + | chr4_2:67779576-67779595 | Msa0617310:CDS | 40.0% |
| TTTGCAGGGTTAAACCCTTT+AGG | - | chr4_2:67779593-67779612 | None:intergenic | 40.0% | |
| TGCTGTAGTTAGAGATAAGC+AGG | + | chr4_2:67779721-67779740 | Msa0617310:CDS | 40.0% | |
| !! | TGCCTGGTTTGATTTTGGAT+TGG | - | chr4_2:67779771-67779790 | None:intergenic | 40.0% |
| !! | GAAGTTGCCTGGTTTGATTT+TGG | - | chr4_2:67779776-67779795 | None:intergenic | 40.0% |
| CCTAGACTTCTTTCTAGACT+TGG | - | chr4_2:67779861-67779880 | None:intergenic | 40.0% | |
| CCAAGTCTAGAAAGAAGTCT+AGG | + | chr4_2:67779858-67779877 | Msa0617310:CDS | 40.0% | |
| !! | GTTGCTGCTTTCAATTACTG+AGG | + | chr4_2:67779933-67779952 | Msa0617310:three_prime_UTR | 40.0% |
| CAAGTGTTAATGTGCGTGTT+TGG | + | chr4_2:67780040-67780059 | Msa0617310:three_prime_UTR | 40.0% | |
| AGAATAGAGAAACGCCGAAG+TGG | - | chr4_2:67775945-67775964 | None:intergenic | 45.0% | |
| TTCGCATAAACGGCGATTCA+GGG | - | chr4_2:67775971-67775990 | None:intergenic | 45.0% | |
| TTTCGCATAAACGGCGATTC+AGG | - | chr4_2:67775972-67775991 | None:intergenic | 45.0% | |
| GTAACAGTGGTTGTTGCTGA+GGG | - | chr4_2:67776008-67776027 | None:intergenic | 45.0% | |
| CTCAGCAACAACCACTGTTA+CGG | + | chr4_2:67776007-67776026 | Msa0617310:five_prime_UTR | 45.0% | |
| TTTCCACCGCTGAAACCTAA+TGG | + | chr4_2:67776043-67776062 | Msa0617310:exon | 45.0% | |
| AATAGATCTTCGAGTGGAGG+TGG | - | chr4_2:67776107-67776126 | None:intergenic | 45.0% | |
| GTGAATAGATCTTCGAGTGG+AGG | - | chr4_2:67776110-67776129 | None:intergenic | 45.0% | |
| GTGGTGAATAGATCTTCGAG+TGG | - | chr4_2:67776113-67776132 | None:intergenic | 45.0% | |
| TCAACGCAACGATCTTGCAT+CGG | - | chr4_2:67776320-67776339 | None:intergenic | 45.0% | |
| TGGAAAAATGGATGCTTGCC+TGG | + | chr4_2:67777492-67777511 | Msa0617310:CDS | 45.0% | |
| GAAGCTTCTGGTAGATATCC+AGG | - | chr4_2:67777513-67777532 | None:intergenic | 45.0% | |
| TTGCTGCCTTAGTTATGGCA+GGG | + | chr4_2:67777569-67777588 | Msa0617310:CDS | 45.0% | |
| TGATCTCCCTGCCATAACTA+AGG | - | chr4_2:67777578-67777597 | None:intergenic | 45.0% | |
| ! | GGGAGATCATCTGAAGTTCA+AGG | + | chr4_2:67777589-67777608 | Msa0617310:CDS | 45.0% |
| ! | ATCTGAAGTTCAAGGATGGC+TGG | + | chr4_2:67777597-67777616 | Msa0617310:CDS | 45.0% |
| AGGATGGCTGGATTCATTTC+GGG | + | chr4_2:67777609-67777628 | Msa0617310:CDS | 45.0% | |
| AATATCACATCACCTTCGGG+CGG | - | chr4_2:67777728-67777747 | None:intergenic | 45.0% | |
| CCATTCATGTATAACCTCCC+AGG | - | chr4_2:67778230-67778249 | None:intergenic | 45.0% | |
| CCTGGGAGGTTATACATGAA+TGG | + | chr4_2:67778227-67778246 | Msa0617310:intron | 45.0% | |
| AATTGGTCAAGAGAGCCTGA+TGG | + | chr4_2:67778282-67778301 | Msa0617310:CDS | 45.0% | |
| AGAGCCTGATGGAAGATAAC+TGG | + | chr4_2:67778293-67778312 | Msa0617310:CDS | 45.0% | |
| ACAATTGGGCTATGTCCAAC+AGG | + | chr4_2:67778357-67778376 | Msa0617310:CDS | 45.0% | |
| TCAAGTCCAATCCATGAGCT+AGG | - | chr4_2:67778654-67778673 | None:intergenic | 45.0% | |
| AAAGACCTGGTCAATCCTGT+TGG | - | chr4_2:67778737-67778756 | None:intergenic | 45.0% | |
| GAAATACTGGCACAGTTTGC+TGG | + | chr4_2:67778987-67779006 | Msa0617310:CDS | 45.0% | |
| TAAAGAACCTGGGACTTCTC+AGG | - | chr4_2:67779020-67779039 | None:intergenic | 45.0% | |
| CCTGGCTAAGTAAAGAACCT+GGG | - | chr4_2:67779030-67779049 | None:intergenic | 45.0% | |
| CCAGGTTCTTTACTTAGCCA+GGG | + | chr4_2:67779028-67779047 | Msa0617310:CDS | 45.0% | |
| GAGAATCGGCTGCAATATGT+GGG | - | chr4_2:67779079-67779098 | None:intergenic | 45.0% | |
| AGAGAATCGGCTGCAATATG+TGG | - | chr4_2:67779080-67779099 | None:intergenic | 45.0% | |
| TGCTTGATTCTGCAACCAAG+TGG | + | chr4_2:67779195-67779214 | Msa0617310:CDS | 45.0% | |
| TTGATTCTGCAACCAAGTGG+TGG | + | chr4_2:67779198-67779217 | Msa0617310:CDS | 45.0% | |
| CATAGCATTAGACCACCACT+TGG | - | chr4_2:67779213-67779232 | None:intergenic | 45.0% | |
| GTGGTCTAATGCTATGACTG+AGG | + | chr4_2:67779217-67779236 | Msa0617310:CDS | 45.0% | |
| ! | AGGCTGCCTCATTCAAGTTA+AGG | + | chr4_2:67779267-67779286 | Msa0617310:CDS | 45.0% |
| ! | GCCTCATTCAAGTTAAGGCA+TGG | + | chr4_2:67779272-67779291 | Msa0617310:CDS | 45.0% |
| GCATGCTGCTAAACTCTATG+AGG | + | chr4_2:67779304-67779323 | Msa0617310:CDS | 45.0% | |
| TGAGGAGCTCGTTAAAAGTC+AGG | + | chr4_2:67779322-67779341 | Msa0617310:CDS | 45.0% | |
| GAGGAGCTCGTTAAAAGTCA+GGG | + | chr4_2:67779323-67779342 | Msa0617310:CDS | 45.0% | |
| !! | GGAAGCATAGAAGCACTAGT+TGG | + | chr4_2:67779344-67779363 | Msa0617310:CDS | 45.0% |
| AAAGACCTTGCCTGGATTGA+AGG | + | chr4_2:67779427-67779446 | Msa0617310:CDS | 45.0% | |
| AAGACCTTGCCTGGATTGAA+GGG | + | chr4_2:67779428-67779447 | Msa0617310:CDS | 45.0% | |
| AATTCCCTTCAATCCAGGCA+AGG | - | chr4_2:67779435-67779454 | None:intergenic | 45.0% | |
| CTTTCCTTCGTCGTTCGTTT+CGG | - | chr4_2:67779525-67779544 | None:intergenic | 45.0% | |
| AAAGTTGACCTCTCTCGCTT+GGG | - | chr4_2:67779650-67779669 | None:intergenic | 45.0% | |
| AAAAGTTGACCTCTCTCGCT+TGG | - | chr4_2:67779651-67779670 | None:intergenic | 45.0% | |
| ! | AGCGAGAGAGGTCAACTTTT+AGG | + | chr4_2:67779651-67779670 | Msa0617310:CDS | 45.0% |
| ! | AACTTTTAGGCCCAAGAGGA+AGG | + | chr4_2:67779664-67779683 | Msa0617310:CDS | 45.0% |
| AAACGAGCTGCTCAAGTTAG+AGG | + | chr4_2:67779689-67779708 | Msa0617310:CDS | 45.0% | |
| GTTAGAGATAAGCAGGAAGC+TGG | + | chr4_2:67779728-67779747 | Msa0617310:CDS | 45.0% | |
| TTGGATGAAGGCTTGGATGA+AGG | - | chr4_2:67779842-67779861 | None:intergenic | 45.0% | |
| TCTAGACTTGGATGAAGGCT+TGG | - | chr4_2:67779849-67779868 | None:intergenic | 45.0% | |
| TCGCATAAACGGCGATTCAG+GGG | - | chr4_2:67775970-67775989 | None:intergenic | 50.0% | |
| CGTAACAGTGGTTGTTGCTG+AGG | - | chr4_2:67776009-67776028 | None:intergenic | 50.0% | |
| TCGGAGCCATTAGGTTTCAG+CGG | - | chr4_2:67776052-67776071 | None:intergenic | 50.0% | |
| CATTGGTGAATGCGGAAGCT+TGG | - | chr4_2:67776151-67776170 | None:intergenic | 50.0% | |
| GTTGCTGCCTTAGTTATGGC+AGG | + | chr4_2:67777568-67777587 | Msa0617310:CDS | 50.0% | |
| CAGGCCAGTTATCTTCCATC+AGG | - | chr4_2:67778300-67778319 | None:intergenic | 50.0% | |
| TTGGGCTATGTCCAACAGGT+AGG | + | chr4_2:67778361-67778380 | Msa0617310:intron | 50.0% | |
| CAAAGCTTTCGCCTAGCTCA+TGG | + | chr4_2:67778640-67778659 | Msa0617310:CDS | 50.0% | |
| CTTTCGCCTAGCTCATGGAT+TGG | + | chr4_2:67778645-67778664 | Msa0617310:CDS | 50.0% | |
| TCATGCCAACAGGATTGACC+AGG | + | chr4_2:67778729-67778748 | Msa0617310:CDS | 50.0% | |
| TGGAAGGGCTGAGGAAATAC+TGG | + | chr4_2:67778974-67778993 | Msa0617310:CDS | 50.0% | |
| AAAGTTGCCTGAGAAGTCCC+AGG | + | chr4_2:67779010-67779029 | Msa0617310:CDS | 50.0% | |
| CCCAGGTTCTTTACTTAGCC+AGG | + | chr4_2:67779027-67779046 | Msa0617310:CDS | 50.0% | |
| CCCTGGCTAAGTAAAGAACC+TGG | - | chr4_2:67779031-67779050 | None:intergenic | 50.0% | |
| TCTTTACTTAGCCAGGGCTC+AGG | + | chr4_2:67779034-67779053 | Msa0617310:CDS | 50.0% | |
| AATCGGCTGCAATATGTGGG+TGG | - | chr4_2:67779076-67779095 | None:intergenic | 50.0% | |
| GCCGGCATGTGTTGAATATC+TGG | - | chr4_2:67779113-67779132 | None:intergenic | 50.0% | |
| GGGAATTGATGTGGACAGCT+TGG | + | chr4_2:67779448-67779467 | Msa0617310:CDS | 50.0% | |
| ! | GGTCAACTTTTAGGCCCAAG+AGG | + | chr4_2:67779660-67779679 | Msa0617310:CDS | 50.0% |
| GCTCGTTTGTCCTTCCTCTT+GGG | - | chr4_2:67779677-67779696 | None:intergenic | 50.0% | |
| AGCTCGTTTGTCCTTCCTCT+TGG | - | chr4_2:67779678-67779697 | None:intergenic | 50.0% | |
| TGCTCAAGTTAGAGGCTCAC+AGG | + | chr4_2:67779697-67779716 | Msa0617310:CDS | 50.0% | |
| GCTCAAGTTAGAGGCTCACA+GGG | + | chr4_2:67779698-67779717 | Msa0617310:CDS | 50.0% | |
| AACCAGGCAACTTCCTCCAA+AGG | + | chr4_2:67779782-67779801 | Msa0617310:CDS | 50.0% | |
| ACTCTGAGTAGCACCTTTGG+AGG | - | chr4_2:67779798-67779817 | None:intergenic | 50.0% | |
| TGCACTCTGAGTAGCACCTT+TGG | - | chr4_2:67779801-67779820 | None:intergenic | 50.0% | |
| TGAAGGCTTGGATGAAGGCT+TGG | - | chr4_2:67779837-67779856 | None:intergenic | 50.0% | |
| GAGCCATTAGGTTTCAGCGG+TGG | - | chr4_2:67776049-67776068 | None:intergenic | 55.0% | |
| GTTTGGGCTTCGGAGCCATT+AGG | - | chr4_2:67776061-67776080 | None:intergenic | 55.0% | |
| ATCTTCGAGTGGAGGTGGAG+CGG | - | chr4_2:67776102-67776121 | None:intergenic | 55.0% | |
| GCAGTTCTCGCAATTGCACC+TGG | + | chr4_2:67776279-67776298 | Msa0617310:intron | 55.0% | |
| ATCTTCTCGGTCTCCTCCTG+AGG | + | chr4_2:67776380-67776399 | Msa0617310:CDS | 55.0% | |
| AGGGCAGCTTGCAGCAATAC+TGG | - | chr4_2:67778933-67778952 | None:intergenic | 55.0% | |
| ATTGCTGCAAGCTGCCCTCT+TGG | + | chr4_2:67778935-67778954 | Msa0617310:CDS | 55.0% | |
| GAACAAAGCTGGAAGGGCTG+AGG | + | chr4_2:67778965-67778984 | Msa0617310:CDS | 55.0% | |
| ACAAGGGTGGCAACAGTAGC+CGG | - | chr4_2:67779131-67779150 | None:intergenic | 55.0% | |
| AGAACGAGCCAACGACGTTG+AGG | + | chr4_2:67779160-67779179 | Msa0617310:CDS | 55.0% | |
| GAACGAGCCAACGACGTTGA+GGG | + | chr4_2:67779161-67779180 | Msa0617310:CDS | 55.0% | |
| GACAGCTTGGAGCGTACTTC+TGG | + | chr4_2:67779461-67779480 | Msa0617310:CDS | 55.0% | |
| GTTGAGGGTCCTCTTCATGC+AGG | + | chr4_2:67779494-67779513 | Msa0617310:CDS | 55.0% | |
| TCGGCAACACCTGCATGAAG+AGG | - | chr4_2:67779506-67779525 | None:intergenic | 55.0% | |
| GTTGCCGAAACGAACGACGA+AGG | + | chr4_2:67779518-67779537 | Msa0617310:CDS | 55.0% | |
| GGGTTTAACCCTGCAAACCC+AGG | + | chr4_2:67779596-67779615 | Msa0617310:CDS | 55.0% | |
| GTCCTCCACCAGATCCAGAA+AGG | + | chr4_2:67779618-67779637 | Msa0617310:CDS | 55.0% | |
| CACCTTTCTGGATCTGGTGG+AGG | - | chr4_2:67779623-67779642 | None:intergenic | 55.0% | |
| CTCCACCAGATCCAGAAAGG+TGG | + | chr4_2:67779621-67779640 | Msa0617310:CDS | 55.0% | |
| AGCCACCTTTCTGGATCTGG+TGG | - | chr4_2:67779626-67779645 | None:intergenic | 55.0% | |
| GGAAGCCACCTTTCTGGATC+TGG | - | chr4_2:67779629-67779648 | None:intergenic | 55.0% | |
| ! | CACCTTTGGAGGAAGTTGCC+TGG | - | chr4_2:67779787-67779806 | None:intergenic | 55.0% |
| !! | GACTGCGTCGGTTTGGGCTT+CGG | - | chr4_2:67776071-67776090 | None:intergenic | 60.0% |
| TCTTCGAGTGGAGGTGGAGC+GGG | - | chr4_2:67776101-67776120 | None:intergenic | 60.0% | |
| ! | AGCTCTTGTTGTCCGCCCGA+AGG | + | chr4_2:67777713-67777732 | Msa0617310:CDS | 60.0% |
| ! | CTTAGCCAGGGCTCAGGTTG+CGG | + | chr4_2:67779040-67779059 | Msa0617310:CDS | 60.0% |
| AGCTGCACCCTCAACGTCGT+TGG | - | chr4_2:67779171-67779190 | None:intergenic | 60.0% | |
| GTGGAGGACCTGGGTTTGCA+GGG | - | chr4_2:67779607-67779626 | None:intergenic | 60.0% | |
| CTGGATCTGGTGGAGGACCT+GGG | - | chr4_2:67779616-67779635 | None:intergenic | 60.0% | |
| TCTGGATCTGGTGGAGGACC+TGG | - | chr4_2:67779617-67779636 | None:intergenic | 60.0% | |
| CGCTTGGGAAGCCACCTTTC+TGG | - | chr4_2:67779635-67779654 | None:intergenic | 60.0% | |
| !! | GGCTGCGACTGCGTCGGTTT+GGG | - | chr4_2:67776077-67776096 | None:intergenic | 65.0% |
| !! | AGGCTGCGACTGCGTCGGTT+TGG | - | chr4_2:67776078-67776097 | None:intergenic | 65.0% |
| CGGAGTGCGTCTTCATCGCC+AGG | - | chr4_2:67776300-67776319 | None:intergenic | 65.0% | |
| GGTGGAGGACCTGGGTTTGC+AGG | - | chr4_2:67779608-67779627 | None:intergenic | 65.0% | |
| GGTGGCTTCCCAAGCGAGAG+AGG | + | chr4_2:67779639-67779658 | Msa0617310:CDS | 65.0% | |
| TCGAGTGGAGGTGGAGCGGG+AGG | - | chr4_2:67776098-67776117 | None:intergenic | 70.0% | |
| ! | AGCCAGGGCTCAGGTTGCGG+CGG | + | chr4_2:67779043-67779062 | Msa0617310:CDS | 70.0% |
| GCGGGAGGCTGCGACTGCGT+CGG | - | chr4_2:67776083-67776102 | None:intergenic | 75.0% | |
| ! | CAGGGCTCAGGTTGCGGCGG+CGG | + | chr4_2:67779046-67779065 | Msa0617310:CDS | 75.0% |
| ! | CGCCGCCGCAACCTGAGCCC+TGG | - | chr4_2:67779048-67779067 | None:intergenic | 80.0% |
| !! | GCTCAGGTTGCGGCGGCGGC+TGG | + | chr4_2:67779050-67779069 | Msa0617310:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 67775939 | 67780127 | 67775939 | ID=Msa0617310;Name=Msa0617310 |
| chr4_2 | mRNA | 67775939 | 67780127 | 67775939 | ID=Msa0617310-mRNA-1;Parent=Msa0617310;Name=Msa0617310-mRNA-1;_AED=0.02;_eAED=0.02;_QI=123|1|1|1|1|1|6|241|668 |
| chr4_2 | exon | 67775939 | 67776191 | 67775939 | ID=Msa0617310-mRNA-1:exon:19371;Parent=Msa0617310-mRNA-1 |
| chr4_2 | exon | 67776283 | 67776419 | 67776283 | ID=Msa0617310-mRNA-1:exon:19372;Parent=Msa0617310-mRNA-1 |
| chr4_2 | exon | 67777382 | 67777734 | 67777382 | ID=Msa0617310-mRNA-1:exon:19373;Parent=Msa0617310-mRNA-1 |
| chr4_2 | exon | 67778282 | 67778378 | 67778282 | ID=Msa0617310-mRNA-1:exon:19374;Parent=Msa0617310-mRNA-1 |
| chr4_2 | exon | 67778469 | 67778750 | 67778469 | ID=Msa0617310-mRNA-1:exon:19375;Parent=Msa0617310-mRNA-1 |
| chr4_2 | exon | 67778879 | 67780127 | 67778879 | ID=Msa0617310-mRNA-1:exon:19376;Parent=Msa0617310-mRNA-1 |
| chr4_2 | five_prime_UTR | 67775939 | 67776061 | 67775939 | ID=Msa0617310-mRNA-1:five_prime_utr;Parent=Msa0617310-mRNA-1 |
| chr4_2 | CDS | 67776062 | 67776191 | 67776062 | ID=Msa0617310-mRNA-1:cds;Parent=Msa0617310-mRNA-1 |
| chr4_2 | CDS | 67776283 | 67776419 | 67776283 | ID=Msa0617310-mRNA-1:cds;Parent=Msa0617310-mRNA-1 |
| chr4_2 | CDS | 67777382 | 67777734 | 67777382 | ID=Msa0617310-mRNA-1:cds;Parent=Msa0617310-mRNA-1 |
| chr4_2 | CDS | 67778282 | 67778378 | 67778282 | ID=Msa0617310-mRNA-1:cds;Parent=Msa0617310-mRNA-1 |
| chr4_2 | CDS | 67778469 | 67778750 | 67778469 | ID=Msa0617310-mRNA-1:cds;Parent=Msa0617310-mRNA-1 |
| chr4_2 | CDS | 67778879 | 67779886 | 67778879 | ID=Msa0617310-mRNA-1:cds;Parent=Msa0617310-mRNA-1 |
| chr4_2 | three_prime_UTR | 67779887 | 67780127 | 67779887 | ID=Msa0617310-mRNA-1:three_prime_utr;Parent=Msa0617310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
