AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0121810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121810 MtrunA17_Chr1g0181231 94.574 129 7 0 1 129 1 129 6.23e-87 249
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121810 AT2G37195.2 52.294 109 51 1 21 129 32 139 3.85e-34 116
Msa0121810 AT2G37195.1 52.294 109 51 1 21 129 22 129 3.87e-34 115

Find 63 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATGTCTTGATTGTATTGT+AGG 0.189273 1_3:-47945270 Msa0121810:three_prime_UTR
TGCTGTTTATTTCAGACTTT+GGG 0.230009 1_3:-47947622 Msa0121810:CDS
CAGAGATATGCTGCATTTAC+AGG 0.235243 1_3:+47945240 None:intergenic
ACCTTACAATTTCATATAGA+TGG 0.236025 1_3:+47945099 None:intergenic
TTTGTAGTATTGCAAATTTA+TGG 0.242937 1_3:+47946065 None:intergenic
TATCTCCTGGGATGTCTATT+AGG 0.255629 1_3:-47945337 Msa0121810:three_prime_UTR
TTCTTAATAACGTTGTTGTT+GGG 0.282822 1_3:+47947746 None:intergenic
GTTAATACCAGGAGCATCTT+TGG 0.296511 1_3:+47946087 None:intergenic
ACAGTTTGATATTGCTAATA+GGG 0.305827 1_3:-47946502 Msa0121810:CDS
GACAGTTTGATATTGCTAAT+AGG 0.308680 1_3:-47946503 Msa0121810:CDS
AAGATCAACGTTAGTGGGTT+TGG 0.327165 1_3:-47947667 Msa0121810:CDS
TAGGGTGAATGGGTGCTTAA+AGG 0.333923 1_3:-47946427 Msa0121810:CDS
ACTTTAATGTATGTGACTTT+CGG 0.347434 1_3:-47947787 Msa0121810:five_prime_UTR
TTGCTGTTTATTTCAGACTT+TGG 0.349606 1_3:-47947623 Msa0121810:CDS
CCAGGATGCCAGTGTCTCTA+AGG 0.352503 1_3:+47945445 None:intergenic
TATGCTGTTTCTTTATCTCC+TGG 0.354139 1_3:-47945350 Msa0121810:three_prime_UTR
CTTCTTAATAACGTTGTTGT+TGG 0.354327 1_3:+47947745 None:intergenic
CTGTGTCTGTTCTTTAACTA+AGG 0.355128 1_3:+47945302 None:intergenic
TTTATATTATTTGTGGGGTT+AGG 0.362688 1_3:-47945137 Msa0121810:three_prime_UTR
TCTGGAGCATGCAGCATGTT+TGG 0.390465 1_3:-47945164 Msa0121810:three_prime_UTR
ATATCATATAATATAAAATC+TGG 0.394725 1_3:-47945182 Msa0121810:three_prime_UTR
CCTTAGAGACACTGGCATCC+TGG 0.403166 1_3:-47945445 Msa0121810:three_prime_UTR
GAAAAGAAGATCAACGTTAG+TGG 0.411060 1_3:-47947673 Msa0121810:CDS
AAGGAGGTGGATAGGGTGAA+TGG 0.422556 1_3:-47946438 Msa0121810:CDS
ATGCTGTTTCTTTATCTCCT+GGG 0.426592 1_3:-47945349 Msa0121810:three_prime_UTR
GTATGATAAGGAGGTGGATA+GGG 0.427663 1_3:-47946445 Msa0121810:CDS
AGAAGAAGAATCAAATTGAA+AGG 0.451886 1_3:-47947709 Msa0121810:five_prime_UTR
TAAATTTGCAATACTACAAA+AGG 0.456708 1_3:-47946062 Msa0121810:intron
CTGTAAATGCAGCATATCTC+TGG 0.457789 1_3:-47945239 Msa0121810:three_prime_UTR
TCCATCTATATGAAATTGTA+AGG 0.461258 1_3:-47945100 None:intergenic
GAAGAAGAATCAAATTGAAA+GGG 0.464002 1_3:-47947708 Msa0121810:five_prime_UTR
ATCTCTGGTAATATATATCC+AGG 0.468718 1_3:-47945224 Msa0121810:three_prime_UTR
AGTATGATAAGGAGGTGGAT+AGG 0.469594 1_3:-47946446 Msa0121810:CDS
TATTATTTGTGGGGTTAGGT+TGG 0.470934 1_3:-47945133 Msa0121810:three_prime_UTR
CTTAGAGACACTGGCATCCT+GGG 0.480021 1_3:-47945444 Msa0121810:three_prime_UTR
TCTTAATAACGTTGTTGTTG+GGG 0.487908 1_3:+47947747 None:intergenic
GAATGCAATCTTACTTGAAA+GGG 0.497392 1_3:-47945672 Msa0121810:CDS
GTGGAGGCTAAAGTATGATA+AGG 0.498733 1_3:-47946457 Msa0121810:CDS
TGTCTAAGCTCAGATATTTG+TGG 0.502463 1_3:-47945528 Msa0121810:three_prime_UTR
AGAATGCAATCTTACTTGAA+AGG 0.506970 1_3:-47945673 Msa0121810:CDS
AGAATCAAATTGAAAGGGAA+TGG 0.508374 1_3:-47947703 Msa0121810:exon
TCGATGATTCTGAGCTCATA+AGG 0.511176 1_3:-47947578 Msa0121810:intron
AGGAGGTGGATAGGGTGAAT+GGG 0.514681 1_3:-47946437 Msa0121810:CDS
AAAAGAAGATCAACGTTAGT+GGG 0.526220 1_3:-47947672 Msa0121810:CDS
ATCCAATCAAAATTCTTCCA+TGG 0.529124 1_3:+47945490 None:intergenic
GTCTGACTCATGTATTTCCC+AGG 0.542356 1_3:+47945427 None:intergenic
TGCAATCTTACTTGAAAGGG+TGG 0.548429 1_3:-47945669 Msa0121810:CDS
CAGATAGCCAAAGATGCTCC+TGG 0.550020 1_3:-47946094 Msa0121810:CDS
TATTGCTAATAGGGAGGCAA+TGG 0.551574 1_3:-47946493 Msa0121810:CDS
CTTAATAACGTTGTTGTTGG+GGG 0.561182 1_3:+47947748 None:intergenic
GCTAAAGTATGATAAGGAGG+TGG 0.572359 1_3:-47946451 Msa0121810:CDS
GAGGCTAAAGTATGATAAGG+AGG 0.580238 1_3:-47946454 Msa0121810:CDS
GCAAATTTATGGTTAATACC+AGG 0.588657 1_3:+47946076 None:intergenic
CAAATATCTGAGCTTAGACA+TGG 0.600140 1_3:+47945531 None:intergenic
ATTAAAACGACAGCTTGAAG+AGG 0.605851 1_3:-47945642 Msa0121810:CDS
CAATCAAGACATACAGAGGA+CGG 0.616857 1_3:+47945279 None:intergenic
GTTTGATATTGCTAATAGGG+AGG 0.640077 1_3:-47946499 Msa0121810:CDS
GCTTAGACATGGAACAGTTG+AGG 0.652532 1_3:+47945542 None:intergenic
GTGCTTAAAGGAACTTCAAG+TGG 0.655527 1_3:-47946415 Msa0121810:intron
AATACAATCAAGACATACAG+AGG 0.656457 1_3:+47945275 None:intergenic
TGGATGAATCTGCTGAGTGG+AGG 0.660472 1_3:-47946473 Msa0121810:CDS
TGTAACCTAATAGACATCCC+AGG 0.676194 1_3:+47945332 None:intergenic
CAATGGATGAATCTGCTGAG+TGG 0.681919 1_3:-47946476 Msa0121810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTAATTTTTAAAATTT+GGG + chr1_3:47947054-47947073 None:intergenic 0.0%
!!! TAAATTTAATTTTTAAAATT+TGG + chr1_3:47947055-47947074 None:intergenic 0.0%
!!! AAATGACAAATTTTTTTTTT+TGG - chr1_3:47945988-47946007 Msa0121810:intron 10.0%
!! GAAAAAATACATAATATTAA+AGG + chr1_3:47946061-47946080 None:intergenic 10.0%
!! ATATCATATAATATAAAATC+TGG - chr1_3:47947735-47947754 Msa0121810:five_prime_UTR 10.0%
!! ATTGTACCTAAAAAATATAA+CGG + chr1_3:47947533-47947552 None:intergenic 15.0%
!!! AAGTTTTGTTTTATGATTGA+TGG - chr1_3:47945501-47945520 Msa0121810:three_prime_UTR 20.0%
!!! AGTTTTGTTTTATGATTGAT+GGG - chr1_3:47945502-47945521 Msa0121810:three_prime_UTR 20.0%
!!! TTGAATGTAACTAGATTTTT+CGG + chr1_3:47945653-47945672 None:intergenic 20.0%
!!! ATTTAGAACTTGATTTTGTT+AGG - chr1_3:47945927-47945946 Msa0121810:intron 20.0%
!!! ACATTTAGAACTTATTTTGA+TGG - chr1_3:47945964-47945983 Msa0121810:intron 20.0%
!!! CATTTAGAACTTATTTTGAT+GGG - chr1_3:47945965-47945984 Msa0121810:intron 20.0%
!!! ACAAATTTTTTTTTTTGGAG+AGG - chr1_3:47945993-47946012 Msa0121810:intron 20.0%
!!! CAAATTTTTTTTTTTGGAGA+GGG - chr1_3:47945994-47946013 Msa0121810:intron 20.0%
!!! AAATTTTTTTTTTTGGAGAG+GGG - chr1_3:47945995-47946014 Msa0121810:intron 20.0%
!!! AATTTTCTTAAATTAGTCAC+TGG - chr1_3:47946250-47946269 Msa0121810:intron 20.0%
!! TTATAATCTATAGTAAACGA+TGG + chr1_3:47946358-47946377 None:intergenic 20.0%
!! TATTTGTACCAAGATAAAAT+TGG - chr1_3:47946675-47946694 Msa0121810:intron 20.0%
!! TTTGTAGTATTGCAAATTTA+TGG + chr1_3:47946855-47946874 None:intergenic 20.0%
!! TAAATTTGCAATACTACAAA+AGG - chr1_3:47946855-47946874 Msa0121810:intron 20.0%
!! AACAAGGATAAAATTGTTAA+AGG - chr1_3:47946965-47946984 Msa0121810:intron 20.0%
!!! ATTTTCTACCATTTTGATTT+TGG - chr1_3:47947131-47947150 Msa0121810:intron 20.0%
!!! ATTTTGGTGGAAATTATTTT+TGG - chr1_3:47947147-47947166 Msa0121810:intron 20.0%
!!! AATTATTTTTGGCATTCTTT+TGG - chr1_3:47947158-47947177 Msa0121810:intron 20.0%
!! TTGTACCTAAAAAATATAAC+GGG + chr1_3:47947532-47947551 None:intergenic 20.0%
!!! TGGTACTTTTATATTATTTG+TGG - chr1_3:47947773-47947792 Msa0121810:five_prime_UTR 20.0%
!!! GGTACTTTTATATTATTTGT+GGG - chr1_3:47947774-47947793 Msa0121810:five_prime_UTR 20.0%
!!! GTACTTTTATATTATTTGTG+GGG - chr1_3:47947775-47947794 Msa0121810:five_prime_UTR 20.0%
! ACTTTAATGTATGTGACTTT+CGG - chr1_3:47945130-47945149 Msa0121810:three_prime_UTR 25.0%
!! TTCTTAATAACGTTGTTGTT+GGG + chr1_3:47945174-47945193 None:intergenic 25.0%
! AGAAGAAGAATCAAATTGAA+AGG - chr1_3:47945208-47945227 Msa0121810:three_prime_UTR 25.0%
! GAAGAAGAATCAAATTGAAA+GGG - chr1_3:47945209-47945228 Msa0121810:three_prime_UTR 25.0%
! TGATTTCAGCATAAAGATAT+GGG + chr1_3:47945436-47945455 None:intergenic 25.0%
! ATGATTTCAGCATAAAGATA+TGG + chr1_3:47945437-47945456 None:intergenic 25.0%
! ACAATATTAGGTCACTTAAA+TGG + chr1_3:47945842-47945861 None:intergenic 25.0%
! TAAATGTAATCAATGAACGA+GGG + chr1_3:47945912-47945931 None:intergenic 25.0%
!!! AATTTTTTTTTTTGGAGAGG+GGG - chr1_3:47945996-47946015 Msa0121810:intron 25.0%
! TGAGTATTTATGTATCTTGT+CGG - chr1_3:47946087-47946106 Msa0121810:CDS 25.0%
!!! TTTTTTAGTCTTCACAATAG+CGG - chr1_3:47946134-47946153 Msa0121810:intron 25.0%
! GATTATAATATAACGATGCT+TGG - chr1_3:47946370-47946389 Msa0121810:intron 25.0%
! ACAGTTTGATATTGCTAATA+GGG - chr1_3:47946415-47946434 Msa0121810:intron 25.0%
! AGATTGTGAATTTGTGATTA+AGG + chr1_3:47946636-47946655 None:intergenic 25.0%
!! ATCATGTACCAATTTTATCT+TGG + chr1_3:47946686-47946705 None:intergenic 25.0%
! AAAATTAACAGTTCATAGTG+TGG + chr1_3:47946995-47947014 None:intergenic 25.0%
! AATTTCCACCAAAATCAAAA+TGG + chr1_3:47947142-47947161 None:intergenic 25.0%
! TGTACCTAAAAAATATAACG+GGG + chr1_3:47947531-47947550 None:intergenic 25.0%
!! ATAACATTGACTAAAAATCC+TGG + chr1_3:47947714-47947733 None:intergenic 25.0%
! TTTATATTATTTGTGGGGTT+AGG - chr1_3:47947780-47947799 Msa0121810:five_prime_UTR 25.0%
! TCTTAATAACGTTGTTGTTG+GGG + chr1_3:47945173-47945192 None:intergenic 30.0%
CTTCTTAATAACGTTGTTGT+TGG + chr1_3:47945175-47945194 None:intergenic 30.0%
AGAATCAAATTGAAAGGGAA+TGG - chr1_3:47945214-47945233 Msa0121810:three_prime_UTR 30.0%
AAAAGAAGATCAACGTTAGT+GGG - chr1_3:47945245-47945264 Msa0121810:three_prime_UTR 30.0%
!!! TTTGGCTTTTCTAATGTTCA+TGG - chr1_3:47945268-47945287 Msa0121810:three_prime_UTR 30.0%
!! TTGGCTTTTCTAATGTTCAT+GGG - chr1_3:47945269-47945288 Msa0121810:three_prime_UTR 30.0%
!! TTGCTGTTTATTTCAGACTT+TGG - chr1_3:47945294-47945313 Msa0121810:three_prime_UTR 30.0%
! TGCTGTTTATTTCAGACTTT+GGG - chr1_3:47945295-47945314 Msa0121810:three_prime_UTR 30.0%
AGTGTTACATTCATAGACTA+AGG + chr1_3:47945567-47945586 None:intergenic 30.0%
TAATCAAACAATCAAACACG+AGG + chr1_3:47945868-47945887 None:intergenic 30.0%
CGTGTTTGATTGTTTGATTA+TGG - chr1_3:47945868-47945887 Msa0121810:intron 30.0%
CTAAATGTAATCAATGAACG+AGG + chr1_3:47945913-47945932 None:intergenic 30.0%
ATGTTGTTAATCTCAGATAG+TGG + chr1_3:47946214-47946233 None:intergenic 30.0%
ATACATGTTAGTGTTCTGTT+CGG - chr1_3:47946273-47946292 Msa0121810:intron 30.0%
GACAGTTTGATATTGCTAAT+AGG - chr1_3:47946414-47946433 Msa0121810:intron 30.0%
GTTCAAGTATTATACCATTG+TGG - chr1_3:47946586-47946605 Msa0121810:intron 30.0%
TTGTGAATTTGTGATTAAGG+CGG + chr1_3:47946633-47946652 None:intergenic 30.0%
AAATTCACAATCTGTGTGAA+TGG - chr1_3:47946643-47946662 Msa0121810:intron 30.0%
AATTCACAATCTGTGTGAAT+GGG - chr1_3:47946644-47946663 Msa0121810:intron 30.0%
! ATTTTACAGGAAAGACAAAG+GGG + chr1_3:47946774-47946793 None:intergenic 30.0%
! GATTTTACAGGAAAGACAAA+GGG + chr1_3:47946775-47946794 None:intergenic 30.0%
! AGATTTTACAGGAAAGACAA+AGG + chr1_3:47946776-47946795 None:intergenic 30.0%
! TTCCTGTAAAATCTTTTGTG+TGG - chr1_3:47946782-47946801 Msa0121810:intron 30.0%
GCAAATTTATGGTTAATACC+AGG + chr1_3:47946844-47946863 None:intergenic 30.0%
! ATTTGGGACTGATTATAAGT+TGG + chr1_3:47947038-47947057 None:intergenic 30.0%
!!! TTCTACCATTTTGATTTTGG+TGG - chr1_3:47947134-47947153 Msa0121810:intron 30.0%
AGAATGCAATCTTACTTGAA+AGG - chr1_3:47947244-47947263 Msa0121810:intron 30.0%
GAATGCAATCTTACTTGAAA+GGG - chr1_3:47947245-47947264 Msa0121810:intron 30.0%
! GGTATATCAGTTTTTAACCA+TGG - chr1_3:47947410-47947429 Msa0121810:intron 30.0%
!! AACCATGGAAGAATTTTGAT+TGG - chr1_3:47947425-47947444 Msa0121810:intron 30.0%
ATCCAATCAAAATTCTTCCA+TGG + chr1_3:47947430-47947449 None:intergenic 30.0%
!!! ATGGAAGAATTTTGATTGGA+TGG - chr1_3:47947429-47947448 Msa0121810:intron 30.0%
!!! AATTTTGATTGGATGGTTCA+TGG - chr1_3:47947436-47947455 Msa0121810:intron 30.0%
GTACCTAAAAAATATAACGG+GGG + chr1_3:47947530-47947549 None:intergenic 30.0%
AATACAATCAAGACATACAG+AGG + chr1_3:47947645-47947664 None:intergenic 30.0%
GTATGTCTTGATTGTATTGT+AGG - chr1_3:47947647-47947666 Msa0121810:CDS 30.0%
ATCTCTGGTAATATATATCC+AGG - chr1_3:47947693-47947712 Msa0121810:exon 30.0%
! CTTAATAACGTTGTTGTTGG+GGG + chr1_3:47945172-47945191 None:intergenic 35.0%
GAAAAGAAGATCAACGTTAG+TGG - chr1_3:47945244-47945263 Msa0121810:three_prime_UTR 35.0%
CAAATCAAATGTTGCAGAAG+AGG + chr1_3:47945371-47945390 None:intergenic 35.0%
ACACTGACATTTCAGATTGA+AGG - chr1_3:47945582-47945601 Msa0121810:three_prime_UTR 35.0%
TACTCTTAAAGATGCTTTGC+GGG + chr1_3:47945750-47945769 None:intergenic 35.0%
CTACTCTTAAAGATGCTTTG+CGG + chr1_3:47945751-47945770 None:intergenic 35.0%
TTAAGAGTAGTGTGTGTTAG+CGG - chr1_3:47945761-47945780 Msa0121810:intron 35.0%
ATGAATAGTGGTAGAAAAGC+AGG - chr1_3:47945790-47945809 Msa0121810:intron 35.0%
TGAATAGTGGTAGAAAAGCA+GGG - chr1_3:47945791-47945810 Msa0121810:intron 35.0%
CTTAAATGGTTAAACCGCTA+CGG + chr1_3:47945828-47945847 None:intergenic 35.0%
AACACGAGGCTTACAATATT+AGG + chr1_3:47945854-47945873 None:intergenic 35.0%
TACTCTATGAATCACAGACA+CGG + chr1_3:47946320-47946339 None:intergenic 35.0%
GTTTGATATTGCTAATAGGG+AGG - chr1_3:47946418-47946437 Msa0121810:CDS 35.0%
TTTCTACCTTCCAAAGTGAA+TGG - chr1_3:47946549-47946568 Msa0121810:intron 35.0%
ATTCACAATCTGTGTGAATG+GGG - chr1_3:47946645-47946664 Msa0121810:intron 35.0%
! TGCCACACAAAAGATTTTAC+AGG + chr1_3:47946787-47946806 None:intergenic 35.0%
! TTATCCTTGTTTCCCTAAGA+TGG + chr1_3:47946956-47946975 None:intergenic 35.0%
!! ATTGACTTGAGCAAAATCAG+CGG + chr1_3:47947087-47947106 None:intergenic 35.0%
!! TTTTTGGCATTCTTTTGGCA+TGG - chr1_3:47947163-47947182 Msa0121810:intron 35.0%
GACCTTCAACTTTATATTCC+AGG - chr1_3:47947221-47947240 Msa0121810:intron 35.0%
CTCCTGGAATATAAAGTTGA+AGG + chr1_3:47947226-47947245 None:intergenic 35.0%
ATTAAAACGACAGCTTGAAG+AGG - chr1_3:47947275-47947294 Msa0121810:intron 35.0%
CAAATATCTGAGCTTAGACA+TGG + chr1_3:47947389-47947408 None:intergenic 35.0%
TGTCTAAGCTCAGATATTTG+TGG - chr1_3:47947389-47947408 Msa0121810:intron 35.0%
! AATTTTCACCTTAGAGACAC+TGG - chr1_3:47947464-47947483 Msa0121810:intron 35.0%
! AAAAAATATAACGGGGGAGA+GGG + chr1_3:47947524-47947543 None:intergenic 35.0%
! TAAAAAATATAACGGGGGAG+AGG + chr1_3:47947525-47947544 None:intergenic 35.0%
!!! TCTCCCCCGTTATATTTTTT+AGG - chr1_3:47947524-47947543 Msa0121810:intron 35.0%
!! TATGCTGTTTCTTTATCTCC+TGG - chr1_3:47947567-47947586 Msa0121810:intron 35.0%
!! ATGCTGTTTCTTTATCTCCT+GGG - chr1_3:47947568-47947587 Msa0121810:intron 35.0%
CTGTGTCTGTTCTTTAACTA+AGG + chr1_3:47947618-47947637 None:intergenic 35.0%
TATTATTTGTGGGGTTAGGT+TGG - chr1_3:47947784-47947803 Msa0121810:five_prime_UTR 35.0%
!! AAGATCAACGTTAGTGGGTT+TGG - chr1_3:47945250-47945269 Msa0121810:three_prime_UTR 40.0%
TCGATGATTCTGAGCTCATA+AGG - chr1_3:47945339-47945358 Msa0121810:three_prime_UTR 40.0%
! ACCACTGCCTTTGTTTGATA+CGG - chr1_3:47945619-47945638 Msa0121810:CDS 40.0%
ATCGTGTCCGTATCAAACAA+AGG + chr1_3:47945629-47945648 None:intergenic 40.0%
! TATACCGCTAGAGCATCTTT+GGG - chr1_3:47946173-47946192 Msa0121810:intron 40.0%
TGGTCCACTCAACTATATGT+AGG - chr1_3:47946390-47946409 Msa0121810:intron 40.0%
GTCTCCTACATATAGTTGAG+TGG + chr1_3:47946397-47946416 None:intergenic 40.0%
TATTGCTAATAGGGAGGCAA+TGG - chr1_3:47946424-47946443 Msa0121810:CDS 40.0%
GTGGAGGCTAAAGTATGATA+AGG - chr1_3:47946460-47946479 Msa0121810:CDS 40.0%
GAGGCTAAAGTATGATAAGG+AGG - chr1_3:47946463-47946482 Msa0121810:CDS 40.0%
GCTAAAGTATGATAAGGAGG+TGG - chr1_3:47946466-47946485 Msa0121810:CDS 40.0%
AGTATGATAAGGAGGTGGAT+AGG - chr1_3:47946471-47946490 Msa0121810:CDS 40.0%
GTATGATAAGGAGGTGGATA+GGG - chr1_3:47946472-47946491 Msa0121810:CDS 40.0%
GTGCTTAAAGGAACTTCAAG+TGG - chr1_3:47946502-47946521 Msa0121810:CDS 40.0%
TTCTAGCCATTCACTTTGGA+AGG + chr1_3:47946558-47946577 None:intergenic 40.0%
TCCAAAGTGAATGGCTAGAA+AGG - chr1_3:47946558-47946577 Msa0121810:intron 40.0%
! ACCTTTCTAGCCATTCACTT+TGG + chr1_3:47946562-47946581 None:intergenic 40.0%
GTGAATGGCTAGAAAGGTTA+AGG - chr1_3:47946564-47946583 Msa0121810:intron 40.0%
! TGAAGTACTACGAACCACAA+TGG + chr1_3:47946603-47946622 None:intergenic 40.0%
AATTTGTGATTAAGGCGGCT+AGG + chr1_3:47946628-47946647 None:intergenic 40.0%
!! GTTAATACCAGGAGCATCTT+TGG + chr1_3:47946833-47946852 None:intergenic 40.0%
TTCTATTCCCTAGCCATCTT+AGG - chr1_3:47946940-47946959 Msa0121810:intron 40.0%
TCTATTCCCTAGCCATCTTA+GGG - chr1_3:47946941-47946960 Msa0121810:intron 40.0%
TTGTTTCCCTAAGATGGCTA+GGG + chr1_3:47946950-47946969 None:intergenic 40.0%
! TTGACTTGAGCAAAATCAGC+GGG + chr1_3:47947086-47947105 None:intergenic 40.0%
CAAGTAAGATTGCATTCTCC+TGG + chr1_3:47947242-47947261 None:intergenic 40.0%
TGCAATCTTACTTGAAAGGG+TGG - chr1_3:47947248-47947267 Msa0121810:intron 40.0%
! AAAAATATAACGGGGGAGAG+GGG + chr1_3:47947523-47947542 None:intergenic 40.0%
TATCTCCTGGGATGTCTATT+AGG - chr1_3:47947580-47947599 Msa0121810:CDS 40.0%
TGTAACCTAATAGACATCCC+AGG + chr1_3:47947588-47947607 None:intergenic 40.0%
CAATCAAGACATACAGAGGA+CGG + chr1_3:47947641-47947660 None:intergenic 40.0%
CAGAGATATGCTGCATTTAC+AGG + chr1_3:47947680-47947699 None:intergenic 40.0%
CTGTAAATGCAGCATATCTC+TGG - chr1_3:47947678-47947697 Msa0121810:CDS 40.0%
! TTTCAGATTGAAGGCGTGTC+TGG - chr1_3:47945591-47945610 Msa0121810:three_prime_UTR 45.0%
GTATCAAACAAAGGCAGTGG+TGG + chr1_3:47945620-47945639 None:intergenic 45.0%
TCCGTATCAAACAAAGGCAG+TGG + chr1_3:47945623-47945642 None:intergenic 45.0%
ACTACACTACACCGCAATAG+CGG + chr1_3:47945705-47945724 None:intergenic 45.0%
TAGCGGTTGCGAATGAATAG+TGG - chr1_3:47945778-47945797 Msa0121810:intron 45.0%
AAGATGCTCTAGCGGTATAG+CGG + chr1_3:47946172-47946191 None:intergenic 45.0%
! CTATACCGCTAGAGCATCTT+TGG - chr1_3:47946172-47946191 Msa0121810:intron 45.0%
! ATACCGCTAGAGCATCTTTG+GGG - chr1_3:47946174-47946193 Msa0121810:intron 45.0%
CAATGGATGAATCTGCTGAG+TGG - chr1_3:47946441-47946460 Msa0121810:CDS 45.0%
TAGGGTGAATGGGTGCTTAA+AGG - chr1_3:47946490-47946509 Msa0121810:CDS 45.0%
CTTGTTTCCCTAAGATGGCT+AGG + chr1_3:47946951-47946970 None:intergenic 45.0%
CTAGCCATCTTAGGGAAACA+AGG - chr1_3:47946949-47946968 Msa0121810:intron 45.0%
! TTGAGCAAAATCAGCGGGTT+CGG + chr1_3:47947081-47947100 None:intergenic 45.0%
GCTTAGACATGGAACAGTTG+AGG + chr1_3:47947378-47947397 None:intergenic 45.0%
GTCTGACTCATGTATTTCCC+AGG + chr1_3:47947493-47947512 None:intergenic 45.0%
!! AAAAAATACATAATATTAAA+GGG + chr1_3:47946060-47946079 None:intergenic 5.0%
! GCACTATAGTGCCGCTATTG+CGG - chr1_3:47945691-47945710 Msa0121810:intron 50.0%
ATGGTTAAACCGCTACGGCA+TGG + chr1_3:47945823-47945842 None:intergenic 50.0%
! GAGGGCATGATGAAAGAGAG+CGG + chr1_3:47945894-47945913 None:intergenic 50.0%
! TACCGCTAGAGCATCTTTGG+GGG - chr1_3:47946175-47946194 Msa0121810:intron 50.0%
TGGATGAATCTGCTGAGTGG+AGG - chr1_3:47946444-47946463 Msa0121810:CDS 50.0%
AAGGAGGTGGATAGGGTGAA+TGG - chr1_3:47946479-47946498 Msa0121810:CDS 50.0%
AGGAGGTGGATAGGGTGAAT+GGG - chr1_3:47946480-47946499 Msa0121810:CDS 50.0%
CAGATAGCCAAAGATGCTCC+TGG - chr1_3:47946823-47946842 Msa0121810:intron 50.0%
CTTAGAGACACTGGCATCCT+GGG - chr1_3:47947473-47947492 Msa0121810:intron 50.0%
! TCTGGAGCATGCAGCATGTT+TGG - chr1_3:47947753-47947772 Msa0121810:five_prime_UTR 50.0%
TGTCCCCACTGTCACAGCAT+AGG - chr1_3:47945724-47945743 Msa0121810:intron 55.0%
!! CGGTATAGCGGATAGCAGGA+TGG + chr1_3:47946160-47946179 None:intergenic 55.0%
!! CTAGCGGTATAGCGGATAGC+AGG + chr1_3:47946164-47946183 None:intergenic 55.0%
GACCCCCAAAGATGCTCTAG+CGG + chr1_3:47946180-47946199 None:intergenic 55.0%
!! TTCGGTGTCAGTGTCCTGTG+TGG - chr1_3:47946291-47946310 Msa0121810:intron 55.0%
CCAGGATGCCAGTGTCTCTA+AGG + chr1_3:47947475-47947494 None:intergenic 55.0%
CCTTAGAGACACTGGCATCC+TGG - chr1_3:47947472-47947491 Msa0121810:intron 55.0%
GGGCCTATGCTGTGACAGTG+GGG + chr1_3:47945730-47945749 None:intergenic 60.0%
CGGGCCTATGCTGTGACAGT+GGG + chr1_3:47945731-47945750 None:intergenic 60.0%
GGGCAATTGCCATGCCGTAG+CGG - chr1_3:47945811-47945830 Msa0121810:intron 60.0%
CACAGACACGGACACCACAC+AGG + chr1_3:47946308-47946327 None:intergenic 60.0%
GCGGGCCTATGCTGTGACAG+TGG + chr1_3:47945732-47945751 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 47945103 47947836 47945103 ID=Msa0121810;Name=Msa0121810
chr1_3 mRNA 47945103 47947836 47945103 ID=Msa0121810-mRNA-1;Parent=Msa0121810;Name=Msa0121810-mRNA-1;_AED=0.12;_eAED=0.12;_QI=130|1|1|1|1|1|4|513|129
chr1_3 exon 47945103 47945696 47945103 ID=Msa0121810-mRNA-1:exon:14481;Parent=Msa0121810-mRNA-1
chr1_3 exon 47946063 47946131 47946063 ID=Msa0121810-mRNA-1:exon:14480;Parent=Msa0121810-mRNA-1
chr1_3 exon 47946416 47946527 47946416 ID=Msa0121810-mRNA-1:exon:14479;Parent=Msa0121810-mRNA-1
chr1_3 exon 47947579 47947836 47947579 ID=Msa0121810-mRNA-1:exon:14478;Parent=Msa0121810-mRNA-1
chr1_3 five_prime_UTR 47947707 47947836 47947707 ID=Msa0121810-mRNA-1:five_prime_utr;Parent=Msa0121810-mRNA-1
chr1_3 CDS 47947579 47947706 47947579 ID=Msa0121810-mRNA-1:cds;Parent=Msa0121810-mRNA-1
chr1_3 CDS 47946416 47946527 47946416 ID=Msa0121810-mRNA-1:cds;Parent=Msa0121810-mRNA-1
chr1_3 CDS 47946063 47946131 47946063 ID=Msa0121810-mRNA-1:cds;Parent=Msa0121810-mRNA-1
chr1_3 CDS 47945616 47945696 47945616 ID=Msa0121810-mRNA-1:cds;Parent=Msa0121810-mRNA-1
chr1_3 three_prime_UTR 47945103 47945615 47945103 ID=Msa0121810-mRNA-1:three_prime_utr;Parent=Msa0121810-mRNA-1
Gene Sequence

>Msa0121810

ATGGTTGTAGTGAAAAGAAGATCAACGTTAGTGGGTTTGGCTTTTCTAATGTTCATGGGTATTGCTGTTTATTTCAGACTTTGGGCTATTGATTACAACATTTCAATCGATGATTCTGAGCTCATAAGGAGACAGTTTGATATTGCTAATAGGGAGGCAATGGATGAATCTGCTGAGTGGAGGCTAAAGTATGATAAGGAGGTGGATAGGGTGAATGGGTGCTTAAAGGAACTTCAAGTGTTTCAGAACTCGTCTCAGATAGCCAAAGATGCTCCTGGTATTAACCATAAATTTGCAATACTACAAAAGGAGAATGCAATCTTACTTGAAAGGGTGGAAACATTAAAACGACAGCTTGAAGAGGAAAAGCTGAAGTGCAATTCACAATAA
Protein sequence

>Msa0121810

MVVVKRRSTLVGLAFLMFMGIAVYFRLWAIDYNISIDDSELIRRQFDIANREAMDESAEWRLKYDKEVDRVNGCLKELQVFQNSSQIAKDAPGINHKFAILQKENAILLERVETLKRQLEEEKLKCNSQ*