Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140570 | XP_004501476.1 | 82.101 | 257 | 45 | 1 | 1 | 257 | 1 | 256 | 1.17e-136 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140570 | A0A1S2YB23 | 82.101 | 257 | 45 | 1 | 1 | 257 | 1 | 256 | 5.61e-137 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0140570 | 0.852266 | 5.168003e-61 | -8.615850e-47 |
| Msa0016670 | Msa0140570 | 0.810111 | 1.355913e-50 | -8.615850e-47 |
| Msa0017510 | Msa0140570 | 0.833305 | 5.755913e-56 | -8.615850e-47 |
| Msa0030430 | Msa0140570 | 0.807410 | 5.124729e-50 | -8.615850e-47 |
| Msa0032840 | Msa0140570 | -0.807498 | 4.907992e-50 | -8.615850e-47 |
| Msa0044020 | Msa0140570 | 0.807818 | 4.198241e-50 | -8.615850e-47 |
| Msa0046100 | Msa0140570 | 0.800903 | 1.158411e-48 | -8.615850e-47 |
| Msa0046750 | Msa0140570 | 0.814533 | 1.467687e-51 | -8.615850e-47 |
| Msa0049650 | Msa0140570 | -0.825588 | 4.319728e-54 | -8.615850e-47 |
| Msa0052080 | Msa0140570 | 0.805105 | 1.567140e-49 | -8.615850e-47 |
| Msa0064560 | Msa0140570 | 0.801851 | 7.409608e-49 | -8.615850e-47 |
| Msa0074320 | Msa0140570 | 0.803679 | 3.106853e-49 | -8.615850e-47 |
| Msa0076310 | Msa0140570 | 0.809794 | 1.586929e-50 | -8.615850e-47 |
| Msa0089630 | Msa0140570 | 0.807491 | 4.924278e-50 | -8.615850e-47 |
| Msa0090590 | Msa0140570 | 0.805344 | 1.396971e-49 | -8.615850e-47 |
| Msa0094120 | Msa0140570 | 0.850909 | 1.251864e-60 | -8.615850e-47 |
| Msa0103000 | Msa0140570 | 0.802965 | 4.367813e-49 | -8.615850e-47 |
| Msa0110970 | Msa0140570 | 0.842925 | 1.919646e-58 | -8.615850e-47 |
| Msa0118400 | Msa0140570 | 0.802028 | 6.813863e-49 | -8.615850e-47 |
| Msa0121810 | Msa0140570 | 0.806816 | 6.844508e-50 | -8.615850e-47 |
| Msa0124340 | Msa0140570 | 0.813418 | 2.586215e-51 | -8.615850e-47 |
| Msa0140570 | Msa0143430 | 0.809381 | 1.946410e-50 | -8.615850e-47 |
| Msa0140570 | Msa0157290 | 0.832501 | 9.120744e-56 | -8.615850e-47 |
| Msa0140570 | Msa0160550 | 0.802479 | 5.500717e-49 | -8.615850e-47 |
| Msa0140570 | Msa0172960 | -0.800405 | 1.463459e-48 | -8.615850e-47 |
| Msa0140570 | Msa0187690 | 0.805671 | 1.192531e-49 | -8.615850e-47 |
| Msa0140570 | Msa0192510 | 0.846465 | 2.135476e-59 | -8.615850e-47 |
| Msa0140570 | Msa0193120 | 0.840214 | 9.947781e-58 | -8.615850e-47 |
| Msa0140570 | Msa0225740 | 0.854078 | 1.563932e-61 | -8.615850e-47 |
| Msa0140570 | Msa0230550 | -0.802571 | 5.265920e-49 | -8.615850e-47 |
| Msa0140570 | Msa0234600 | 0.801519 | 8.665361e-49 | -8.615850e-47 |
| Msa0140570 | Msa0238070 | -0.801583 | 8.406439e-49 | -8.615850e-47 |
| Msa0140570 | Msa0243100 | 0.800305 | 1.533971e-48 | -8.615850e-47 |
| Msa0140570 | Msa0264570 | 0.823113 | 1.649596e-53 | -8.615850e-47 |
| Msa0140570 | Msa0272690 | 0.821425 | 4.066063e-53 | -8.615850e-47 |
| Msa0140570 | Msa0280900 | 0.812183 | 4.818896e-51 | -8.615850e-47 |
| Msa0140570 | Msa0294560 | -0.800420 | 1.453117e-48 | -8.615850e-47 |
| Msa0140570 | Msa0295070 | 0.802013 | 6.861683e-49 | -8.615850e-47 |
| Msa0140570 | Msa0318250 | 0.802347 | 5.857970e-49 | -8.615850e-47 |
| Msa0140570 | Msa0320100 | 0.809516 | 1.820939e-50 | -8.615850e-47 |
| Msa0140570 | Msa0341050 | 0.801538 | 8.590708e-49 | -8.615850e-47 |
| Msa0140570 | Msa0369220 | 0.803480 | 3.416968e-49 | -8.615850e-47 |
| Msa0140570 | Msa0381550 | 0.969541 | 2.830711e-130 | -8.615850e-47 |
| Msa0140570 | Msa0414950 | -0.810481 | 1.128363e-50 | -8.615850e-47 |
| Msa0140570 | Msa0419820 | 0.830730 | 2.490457e-55 | -8.615850e-47 |
| Msa0140570 | Msa0423040 | 0.801485 | 8.805610e-49 | -8.615850e-47 |
| Msa0140570 | Msa0424920 | 0.826094 | 3.275012e-54 | -8.615850e-47 |
| Msa0140570 | Msa0425010 | 0.838417 | 2.912573e-57 | -8.615850e-47 |
| Msa0140570 | Msa0436050 | 0.828956 | 6.737998e-55 | -8.615850e-47 |
| Msa0140570 | Msa0441130 | 0.826043 | 3.368949e-54 | -8.615850e-47 |
| Msa0140570 | Msa0443500 | 0.822106 | 2.828751e-53 | -8.615850e-47 |
| Msa0140570 | Msa0459770 | -0.809759 | 1.614502e-50 | -8.615850e-47 |
| Msa0140570 | Msa0469030 | 0.812282 | 4.586605e-51 | -8.615850e-47 |
| Msa0140570 | Msa0480980 | 0.815269 | 1.007962e-51 | -8.615850e-47 |
| Msa0140570 | Msa0483860 | 0.842394 | 2.656202e-58 | -8.615850e-47 |
| Msa0140570 | Msa0507680 | 0.803083 | 4.128808e-49 | -8.615850e-47 |
| Msa0140570 | Msa0510350 | 0.804036 | 2.619795e-49 | -8.615850e-47 |
| Msa0140570 | Msa0516320 | 0.839921 | 1.186391e-57 | -8.615850e-47 |
| Msa0140570 | Msa0520070 | 0.965697 | 6.092379e-125 | -8.615850e-47 |
| Msa0140570 | Msa0555910 | 0.801412 | 9.116558e-49 | -8.615850e-47 |
| Msa0140570 | Msa0577940 | -0.816527 | 5.282952e-52 | -8.615850e-47 |
| Msa0140570 | Msa0581760 | 0.808050 | 3.746138e-50 | -8.615850e-47 |
| Msa0140570 | Msa0607200 | 0.803764 | 2.983409e-49 | -8.615850e-47 |
| Msa0140570 | Msa0615590 | 0.803907 | 2.786615e-49 | -8.615850e-47 |
| Msa0140570 | Msa0616220 | 0.845366 | 4.247046e-59 | -8.615850e-47 |
| Msa0140570 | Msa0620240 | 0.804024 | 2.634555e-49 | -8.615850e-47 |
| Msa0140570 | Msa0621490 | 0.816067 | 6.694816e-52 | -8.615850e-47 |
| Msa0140570 | Msa0625530 | -0.829087 | 6.262957e-55 | -8.615850e-47 |
| Msa0140570 | Msa0643560 | 0.801794 | 7.612341e-49 | -8.615850e-47 |
| Msa0140570 | Msa0650020 | 0.816318 | 5.883041e-52 | -8.615850e-47 |
| Msa0140570 | Msa0661190 | -0.809283 | 2.043221e-50 | -8.615850e-47 |
| Msa0140570 | Msa0677290 | 0.802482 | 5.494372e-49 | -8.615850e-47 |
| Msa0140570 | Msa0692080 | 0.812606 | 3.895176e-51 | -8.615850e-47 |
| Msa0140570 | Msa0699550 | 0.840093 | 1.070183e-57 | -8.615850e-47 |
| Msa0140570 | Msa0703230 | 0.800408 | 1.461719e-48 | -8.615850e-47 |
| Msa0140570 | Msa0708520 | 0.821951 | 3.071920e-53 | -8.615850e-47 |
| Msa0140570 | Msa0738630 | -0.809915 | 1.494255e-50 | -8.615850e-47 |
| Msa0140570 | Msa0743720 | 0.803584 | 3.252020e-49 | -8.615850e-47 |
| Msa0140570 | Msa0760380 | 0.816309 | 5.910559e-52 | -8.615850e-47 |
| Msa0140570 | Msa0783760 | -0.806156 | 9.430576e-50 | -8.615850e-47 |
| Msa0140570 | Msa0813720 | 0.803644 | 3.159711e-49 | -8.615850e-47 |
| Msa0140570 | Msa0813740 | 0.800484 | 1.410532e-48 | -8.615850e-47 |
| Msa0140570 | Msa0818980 | -0.809610 | 1.737790e-50 | -8.615850e-47 |
| Msa0140570 | Msa0819030 | -0.817339 | 3.470552e-52 | -8.615850e-47 |
| Msa0140570 | Msa0824680 | 0.803891 | 2.807573e-49 | -8.615850e-47 |
| Msa0140570 | Msa0850960 | 0.800969 | 1.123107e-48 | -8.615850e-47 |
| Msa0140570 | Msa0871270 | 0.820013 | 8.585230e-53 | -8.615850e-47 |
| Msa0140570 | Msa0876200 | 0.816301 | 5.935555e-52 | -8.615850e-47 |
| Msa0140570 | Msa0878500 | 0.827736 | 1.326871e-54 | -8.615850e-47 |
| Msa0140570 | Msa0880140 | 0.830025 | 3.704180e-55 | -8.615850e-47 |
| Msa0140570 | Msa0880440 | 0.806732 | 7.131027e-50 | -8.615850e-47 |
| Msa0140570 | Msa0888530 | 0.802699 | 4.956951e-49 | -8.615850e-47 |
| Msa0140570 | Msa0938220 | 0.813648 | 2.300901e-51 | -8.615850e-47 |
| Msa0140570 | Msa0944190 | 0.844956 | 5.482064e-59 | -8.615850e-47 |
| Msa0140570 | Msa0968590 | 0.806137 | 9.517376e-50 | -8.615850e-47 |
| Msa0140570 | Msa0979010 | 0.800743 | 1.248918e-48 | -8.615850e-47 |
| Msa0140570 | Msa0981060 | 0.802391 | 5.736566e-49 | -8.615850e-47 |
| Msa0140570 | Msa0993290 | 0.802498 | 5.453167e-49 | -8.615850e-47 |
| Msa0140570 | Msa0993600 | 0.810602 | 1.062520e-50 | -8.615850e-47 |
| Msa0140570 | Msa1003310 | 0.806738 | 7.109308e-50 | -8.615850e-47 |
| Msa0140570 | Msa1003750 | 0.806260 | 8.969831e-50 | -8.615850e-47 |
| Msa0140570 | Msa1007610 | -0.802290 | 6.016883e-49 | -8.615850e-47 |
| Msa0140570 | Msa1013400 | 0.803673 | 3.115461e-49 | -8.615850e-47 |
| Msa0140570 | Msa1014500 | 0.805198 | 1.498795e-49 | -8.615850e-47 |
| Msa0140570 | Msa1023400 | 0.842331 | 2.759626e-58 | -8.615850e-47 |
| Msa0140570 | Msa1040400 | 0.824526 | 7.693797e-54 | -8.615850e-47 |
| Msa0140570 | Msa1040830 | 0.818765 | 1.652799e-52 | -8.615850e-47 |
| Msa0140570 | Msa1046470 | 0.803842 | 2.874261e-49 | -8.615850e-47 |
| Msa0140570 | Msa1082700 | 0.824711 | 6.961826e-54 | -8.615850e-47 |
| Msa0140570 | Msa1083150 | 0.802011 | 6.868453e-49 | -8.615850e-47 |
| Msa0140570 | Msa1106700 | 0.804153 | 2.476792e-49 | -8.615850e-47 |
| Msa0140570 | Msa1124110 | 0.806741 | 7.099038e-50 | -8.615850e-47 |
| Msa0140570 | Msa1127890 | 0.813691 | 2.251341e-51 | -8.615850e-47 |
| Msa0140570 | Msa1133000 | 0.805524 | 1.280689e-49 | -8.615850e-47 |
| Msa0140570 | Msa1134110 | 0.810782 | 9.713020e-51 | -8.615850e-47 |
| Msa0140570 | Msa1139810 | 0.818623 | 1.779753e-52 | -8.615850e-47 |
| Msa0140570 | Msa1168950 | 0.800671 | 1.291685e-48 | -8.615850e-47 |
| Msa0140570 | Msa1174010 | 0.802713 | 4.924482e-49 | -8.615850e-47 |
| Msa0140570 | Msa1193070 | 0.816288 | 5.975424e-52 | -8.615850e-47 |
| Msa0140570 | Msa1203250 | 0.814260 | 1.686846e-51 | -8.615850e-47 |
| Msa0140570 | Msa1209460 | 0.801449 | 8.956920e-49 | -8.615850e-47 |
| Msa0140570 | Msa1222970 | 0.818767 | 1.650609e-52 | -8.615850e-47 |
| Msa0140570 | Msa1242230 | 0.804232 | 2.384745e-49 | -8.615850e-47 |
| Msa0140570 | Msa1242240 | 0.807107 | 5.940266e-50 | -8.615850e-47 |
| Msa0140570 | Msa1253930 | -0.801311 | 9.558224e-49 | -8.615850e-47 |
| Msa0140570 | Msa1254610 | 0.805301 | 1.425845e-49 | -8.615850e-47 |
| Msa0140570 | Msa1264020 | 0.827210 | 1.774529e-54 | -8.615850e-47 |
| Msa0140570 | Msa1267220 | 0.808414 | 3.133043e-50 | -8.615850e-47 |
| Msa0140570 | Msa1283840 | 0.806442 | 8.208893e-50 | -8.615850e-47 |
| Msa0140570 | Msa1284260 | 0.807623 | 4.617516e-50 | -8.615850e-47 |
| Msa0140570 | Msa1294670 | 0.806926 | 6.486838e-50 | -8.615850e-47 |
| Msa0140570 | Msa1307660 | -0.814136 | 1.796194e-51 | -8.615850e-47 |
| Msa0140570 | Msa1322860 | 0.804023 | 2.635796e-49 | -8.615850e-47 |
| Msa0140570 | Msa1327050 | 0.813343 | 2.685103e-51 | -8.615850e-47 |
| Msa0140570 | Msa1346370 | 0.822084 | 2.862281e-53 | -8.615850e-47 |
| Msa0140570 | Msa1367080 | 0.813162 | 2.943582e-51 | -8.615850e-47 |
| Msa0140570 | Msa1374120 | 0.802705 | 4.942206e-49 | -8.615850e-47 |
| Msa0140570 | Msa1392200 | 0.818365 | 2.036134e-52 | -8.615850e-47 |
| Msa0140570 | Msa1411070 | 0.804734 | 1.873569e-49 | -8.615850e-47 |
| Msa0140570 | Msa1415640 | 0.801374 | 9.279566e-49 | -8.615850e-47 |
| Msa0140570 | Msa1417420 | 0.816724 | 4.770271e-52 | -8.615850e-47 |
| Msa0140570 | Msa1417870 | 0.990045 | 8.340810e-181 | -8.615850e-47 |
| Msa0140570 | Msa1427760 | 0.828058 | 1.110419e-54 | -8.615850e-47 |
| Msa0140570 | Msa1429250 | 0.815622 | 8.414090e-52 | -8.615850e-47 |
| Msa0140570 | Msa1446830 | 0.809387 | 1.940131e-50 | -8.615850e-47 |
| Msa0140570 | Msa1457440 | 0.833318 | 5.712305e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140570 | MtrunA17_Chr1g0151791 | 54.231 | 260 | 116 | 2 | 1 | 257 | 1 | 260 | 3.86e-85 | 254 |
| Msa0140570 | MtrunA17_Chr3g0135551 | 93.023 | 86 | 4 | 1 | 1 | 86 | 1 | 84 | 1.83e-32 | 114 |
| Msa0140570 | MtrunA17_Chr3g0135531 | 91.860 | 86 | 5 | 1 | 1 | 86 | 1 | 84 | 2.24e-32 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140570 | AT3G20430.1 | 47.348 | 264 | 125 | 7 | 1 | 256 | 1 | 258 | 2.93e-68 | 212 |
Find 78 sgRNAs with CRISPR-Local
Find 423 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCAAGAATTCGAATTAT+TGG | 0.185828 | 1_3:-74793745 | None:intergenic |
| TTCTTTCATGTGTTCCTATT+TGG | 0.197768 | 1_3:-74788332 | Msa0140570:three_prime_UTR |
| TGAAACACTCGTGGCAATTT+TGG | 0.217790 | 1_3:+74788175 | None:intergenic |
| GCCCAATTTGCAAAATGTTT+TGG | 0.258923 | 1_3:-74793220 | Msa0140570:CDS |
| TGAGAAGAATCATCTTTCTT+TGG | 0.263292 | 1_3:+74788658 | None:intergenic |
| CTTTATGATTATATAGGATT+AGG | 0.263431 | 1_3:-74788260 | Msa0140570:three_prime_UTR |
| CTGTCTATATTTGTGACTTT+AGG | 0.289769 | 1_3:+74793075 | None:intergenic |
| TGTTGAAGAAGGAGAGTTAG+TGG | 0.307280 | 1_3:-74793244 | Msa0140570:CDS |
| ATTATCTCTTTGTAGGCCTT+TGG | 0.314430 | 1_3:+74789082 | None:intergenic |
| ATGCAAGAATTCGAATTATT+GGG | 0.316904 | 1_3:-74793744 | None:intergenic |
| TATTAATGCAGAAGCAATTC+AGG | 0.317250 | 1_3:-74788708 | Msa0140570:intron |
| AGATGGCTTTATGATTATAT+AGG | 0.318884 | 1_3:-74788266 | Msa0140570:three_prime_UTR |
| GTCTACCATCAGCAGTCTTT+TGG | 0.323934 | 1_3:+74789155 | None:intergenic |
| ATATTTAGTTGTTTAACATT+TGG | 0.343026 | 1_3:+74788682 | None:intergenic |
| TTTATGATTATATAGGATTA+GGG | 0.351487 | 1_3:-74788259 | Msa0140570:three_prime_UTR |
| AGATGATTCTTCTCAAGGTT+TGG | 0.368080 | 1_3:-74788650 | Msa0140570:CDS |
| TATCTGTTCATGACAGGTTA+AGG | 0.381152 | 1_3:-74788522 | Msa0140570:CDS |
| CTGCTGATGGTAGACGATTT+CGG | 0.382090 | 1_3:-74789147 | Msa0140570:CDS |
| GGTTTGGCCTTATCATTTGC+TGG | 0.387229 | 1_3:-74788634 | Msa0140570:CDS |
| GAAGAACAAGAGAAAGAGAA+AGG | 0.401070 | 1_3:-74793106 | Msa0140570:CDS |
| GAAAAGAGCAAAAGAGTTTG+AGG | 0.403168 | 1_3:-74789059 | Msa0140570:intron |
| GTGGAACATCATAAAGGTTC+AGG | 0.418166 | 1_3:-74789107 | Msa0140570:CDS |
| TACACTGCTGCGGGTTGTCT+TGG | 0.419749 | 1_3:-74791202 | Msa0140570:CDS |
| AGTGCTGAACTTGTCTCAAA+TGG | 0.426040 | 1_3:-74788125 | Msa0140570:three_prime_UTR |
| AAAGGGTGGAGAGACCAAAT+AGG | 0.432254 | 1_3:+74788318 | None:intergenic |
| AATTCGAATTATTGGGAGAC+AGG | 0.433198 | 1_3:-74793737 | Msa0140570:five_prime_UTR |
| TCATTTGCTGGCAGTGATCA+AGG | 0.433421 | 1_3:-74788622 | Msa0140570:CDS |
| ATGGAAGAAGTGGGGTATAG+TGG | 0.440867 | 1_3:-74788222 | Msa0140570:three_prime_UTR |
| ATGGTAGACGATTTCGGAGT+GGG | 0.444653 | 1_3:-74789141 | Msa0140570:CDS |
| ATGCTGATTCAGTGTTTGTA+AGG | 0.449143 | 1_3:+74793679 | None:intergenic |
| AGATCATCATCATAGGAAAC+AGG | 0.457123 | 1_3:+74788496 | None:intergenic |
| AAGAAAGATGATTCTTCTCA+AGG | 0.457634 | 1_3:-74788655 | Msa0140570:CDS |
| TTGCATTTCTGATGCAAGAA+AGG | 0.457701 | 1_3:+74788582 | None:intergenic |
| TCCTATGATGATGATCTACT+TGG | 0.470099 | 1_3:-74788490 | Msa0140570:CDS |
| TATATAATCATAAAGCCATC+TGG | 0.480299 | 1_3:+74788268 | None:intergenic |
| AAGAGAAAGAGAAAGGGTTC+AGG | 0.486855 | 1_3:-74793099 | Msa0140570:CDS |
| TCCAAGTAGATCATCATCAT+AGG | 0.495710 | 1_3:+74788489 | None:intergenic |
| CATACTGTGGAACATCATAA+AGG | 0.500400 | 1_3:-74789113 | Msa0140570:CDS |
| GACTGTTTGTCATGGAGGAA+GGG | 0.504833 | 1_3:-74793329 | Msa0140570:exon |
| AATGCAAAATCAACACGAAC+CGG | 0.510093 | 1_3:-74788566 | Msa0140570:CDS |
| ATCACTGCCAGCAAATGATA+AGG | 0.511776 | 1_3:+74788627 | None:intergenic |
| ATTCAGTGTTTGTAAGGCGG+TGG | 0.511836 | 1_3:+74793685 | None:intergenic |
| CACTAAACCTCTGTCTAAGA+AGG | 0.512541 | 1_3:+74788394 | None:intergenic |
| AATTATTGGGAGACAGGGAG+AGG | 0.514271 | 1_3:-74793731 | Msa0140570:five_prime_UTR |
| GAATGTATCGTTGTTATAGT+TGG | 0.514326 | 1_3:-74788198 | Msa0140570:three_prime_UTR |
| AGTCATGTTGCATCATTGAC+TGG | 0.517971 | 1_3:+74788460 | None:intergenic |
| ACTGTTTGTCATGGAGGAAG+GGG | 0.519176 | 1_3:-74793328 | Msa0140570:exon |
| AAGAACAAGAGAAAGAGAAA+GGG | 0.523902 | 1_3:-74793105 | Msa0140570:CDS |
| AGGATGTAGTCTTCGCTTGA+GGG | 0.524918 | 1_3:+74788354 | None:intergenic |
| TAAAGAAACGAGGAAATGAA+AGG | 0.525448 | 1_3:+74788300 | None:intergenic |
| TTTCTCTTTCAGATGACGAC+AGG | 0.526223 | 1_3:+74791240 | None:intergenic |
| AGGTGTTTGACTGTTTGTCA+TGG | 0.535671 | 1_3:-74793337 | Msa0140570:exon |
| TGACTGTTTGTCATGGAGGA+AGG | 0.536588 | 1_3:-74793330 | Msa0140570:exon |
| GAACTTGTCTCAAATGGATA+CGG | 0.539039 | 1_3:-74788119 | Msa0140570:three_prime_UTR |
| GACATGATTGATGTTGAAGA+AGG | 0.542173 | 1_3:-74793255 | Msa0140570:CDS |
| AAGGATGTAGTCTTCGCTTG+AGG | 0.544346 | 1_3:+74788353 | None:intergenic |
| TCTTTATTTACCTTGCCAGA+TGG | 0.557795 | 1_3:-74788283 | Msa0140570:three_prime_UTR |
| CTAAAGTCACAAATATAGAC+AGG | 0.559077 | 1_3:-74793074 | Msa0140570:intron |
| AAAGAAACGAGGAAATGAAA+GGG | 0.559782 | 1_3:+74788301 | None:intergenic |
| AAATAGGAACACATGAAAGA+AGG | 0.572537 | 1_3:+74788334 | None:intergenic |
| AATCATAAAGCCATCTGGCA+AGG | 0.592575 | 1_3:+74788273 | None:intergenic |
| GTTGATGCAATACAGGCTTG+TGG | 0.597539 | 1_3:-74789181 | Msa0140570:CDS |
| ATTCGAATTATTGGGAGACA+GGG | 0.606740 | 1_3:-74793736 | Msa0140570:five_prime_UTR |
| ATTAAGTGATATCATCAAAG+AGG | 0.607067 | 1_3:-74791170 | Msa0140570:intron |
| TGGTAGACGATTTCGGAGTG+GGG | 0.613310 | 1_3:-74789140 | Msa0140570:CDS |
| CATAAAGGTTCAGGAACCAA+AGG | 0.616588 | 1_3:-74789098 | Msa0140570:CDS |
| GGTAGACGATTTCGGAGTGG+GGG | 0.617630 | 1_3:-74789139 | Msa0140570:CDS |
| TATATGGTATACACTGCTGC+GGG | 0.621075 | 1_3:-74791211 | Msa0140570:CDS |
| GAAACGAGGAAATGAAAGGG+TGG | 0.627679 | 1_3:+74788304 | None:intergenic |
| CTGATTCAGTGTTTGTAAGG+CGG | 0.628840 | 1_3:+74793682 | None:intergenic |
| ATATATGGTATACACTGCTG+CGG | 0.631527 | 1_3:-74791212 | Msa0140570:CDS |
| AAAATCTAATGAAACACTCG+TGG | 0.643803 | 1_3:+74788166 | None:intergenic |
| GGAGGCCAAAAGACTGCTGA+TGG | 0.663490 | 1_3:-74789160 | Msa0140570:CDS |
| GATGGTAGACGATTTCGGAG+TGG | 0.663553 | 1_3:-74789142 | Msa0140570:CDS |
| GATGCAATACAGGCTTGTGG+AGG | 0.676395 | 1_3:-74789178 | Msa0140570:CDS |
| TGTTTGACTGTTTGTCATGG+AGG | 0.687318 | 1_3:-74793334 | Msa0140570:exon |
| TATAGTGAGAATTCAAAGTG+CGG | 0.703531 | 1_3:-74793153 | Msa0140570:CDS |
| GCAAGGTAAATAAAGAAACG+AGG | 0.739293 | 1_3:+74788290 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAACAAAAAAATGTAAA+TGG | + | chr1_3:74788358-74788377 | None:intergenic | 10.0% |
| !!! | AATTTTTGTAAAAAAATGTT+TGG | - | chr1_3:74789743-74789762 | Msa0140570:intron | 10.0% |
| !! | ATGAAAATAAAAATAAAAAC+AGG | + | chr1_3:74792561-74792580 | None:intergenic | 10.0% |
| !!! | TGAATAATCTTTATATTTTT+GGG | - | chr1_3:74792795-74792814 | Msa0140570:intron | 10.0% |
| !!! | TTATCGGAATATTTTATTTT+AGG | - | chr1_3:74788805-74788824 | Msa0140570:intron | 15.0% |
| !!! | TAAACTAAAAATGACATTTT+TGG | - | chr1_3:74788965-74788984 | Msa0140570:intron | 15.0% |
| !! | AAATCCATAATAAACATTAT+GGG | - | chr1_3:74789020-74789039 | Msa0140570:intron | 15.0% |
| !! | AGTCTAATATTAAGTATTTA+AGG | - | chr1_3:74789405-74789424 | Msa0140570:intron | 15.0% |
| !! | GTCTAATATTAAGTATTTAA+GGG | - | chr1_3:74789406-74789425 | Msa0140570:intron | 15.0% |
| !!! | TAAAAAACATTTTATAGTGT+CGG | - | chr1_3:74789571-74789590 | Msa0140570:intron | 15.0% |
| !!! | ATTTTTTTACAAAAATTCCT+AGG | + | chr1_3:74789740-74789759 | None:intergenic | 15.0% |
| !!! | ATAATTTTGACATTTATTTC+CGG | + | chr1_3:74789849-74789868 | None:intergenic | 15.0% |
| !!! | TATGAAATATATATGGTTTT+TGG | + | chr1_3:74789899-74789918 | None:intergenic | 15.0% |
| !! | CAGAAAATATGAAATATATA+TGG | + | chr1_3:74789906-74789925 | None:intergenic | 15.0% |
| !! | TCAAATGACTTAAATAATAT+TGG | - | chr1_3:74790822-74790841 | Msa0140570:intron | 15.0% |
| !! | GATTAAATTAAGTAAAACAA+AGG | + | chr1_3:74791256-74791275 | None:intergenic | 15.0% |
| !! | TTTCTGAATATTTCTTAATT+TGG | - | chr1_3:74791315-74791334 | Msa0140570:intron | 15.0% |
| !!! | GTGAATAATCTTTATATTTT+TGG | - | chr1_3:74792794-74792813 | Msa0140570:intron | 15.0% |
| !! | ATATTTAGTTGTTTAACATT+TGG | + | chr1_3:74793148-74793167 | None:intergenic | 15.0% |
| !! | TTTATGATTATATAGGATTA+GGG | - | chr1_3:74793568-74793587 | Msa0140570:intron | 15.0% |
| !! | AAACAATACGCAATAAATAA+AGG | + | chr1_3:74788247-74788266 | None:intergenic | 20.0% |
| !!! | TAAAAATGACATTTTTGGAT+TGG | - | chr1_3:74788970-74788989 | Msa0140570:intron | 20.0% |
| !! | GAAATCCATAATAAACATTA+TGG | - | chr1_3:74789019-74789038 | Msa0140570:intron | 20.0% |
| !! | AATCCATAATAAACATTATG+GGG | - | chr1_3:74789021-74789040 | Msa0140570:intron | 20.0% |
| !!! | ATTTTAGCCTTTTTTATGTT+TGG | - | chr1_3:74789100-74789119 | Msa0140570:CDS | 20.0% |
| !! | AAACAAACCAAACATAAAAA+AGG | + | chr1_3:74789110-74789129 | None:intergenic | 20.0% |
| !!! | CTTAGATTTTTTTTATTGTG+CGG | - | chr1_3:74789144-74789163 | Msa0140570:CDS | 20.0% |
| !!! | TTAGATTTTTTTTATTGTGC+GGG | - | chr1_3:74789145-74789164 | Msa0140570:CDS | 20.0% |
| !!! | TTAGTCTTATGCTTTTTTAT+TGG | - | chr1_3:74789310-74789329 | Msa0140570:intron | 20.0% |
| !!! | TAATTTTGACATTTATTTCC+GGG | + | chr1_3:74789848-74789867 | None:intergenic | 20.0% |
| !!! | ACTATGCATTGTTTTTTTTT+TGG | - | chr1_3:74790026-74790045 | Msa0140570:intron | 20.0% |
| !!! | TCTACTTAAAGATGTTATTT+CGG | - | chr1_3:74790871-74790890 | Msa0140570:intron | 20.0% |
| !! | ATGATTTGAACAAATGTATA+TGG | + | chr1_3:74791171-74791190 | None:intergenic | 20.0% |
| !!! | TCTTTTATGTAAAGCAAATA+TGG | - | chr1_3:74791913-74791932 | Msa0140570:intron | 20.0% |
| !! | GCAAATAAATAAAGAAACTT+TGG | - | chr1_3:74792061-74792080 | Msa0140570:intron | 20.0% |
| !!! | TTTGCATATAGTGTTTATTT+TGG | - | chr1_3:74792201-74792220 | Msa0140570:intron | 20.0% |
| !!! | ATATAGTGTTTATTTTGGTT+GGG | - | chr1_3:74792206-74792225 | Msa0140570:intron | 20.0% |
| !! | AAAAATAAGTAAAGTCACTA+CGG | + | chr1_3:74792350-74792369 | None:intergenic | 20.0% |
| !! | AATTTACAATGTATCAACTT+AGG | + | chr1_3:74792608-74792627 | None:intergenic | 20.0% |
| !!! | ATAATCTTTATATTTTTGGG+TGG | - | chr1_3:74792798-74792817 | Msa0140570:intron | 20.0% |
| !!! | TAATCTTTATATTTTTGGGT+GGG | - | chr1_3:74792799-74792818 | Msa0140570:intron | 20.0% |
| !! | TTTGTAGTAACTATTAAGTA+GGG | - | chr1_3:74792925-74792944 | Msa0140570:intron | 20.0% |
| !! | TATCCAAATAAATCAAGTAA+AGG | - | chr1_3:74792965-74792984 | Msa0140570:intron | 20.0% |
| !!! | AAATTTTCTTTAGAAGTAAC+CGG | + | chr1_3:74793283-74793302 | None:intergenic | 20.0% |
| !! | CTTTATGATTATATAGGATT+AGG | - | chr1_3:74793567-74793586 | Msa0140570:intron | 20.0% |
| ! | TTCAAATTGCACTTACAATT+AGG | - | chr1_3:74788285-74788304 | Msa0140570:three_prime_UTR | 25.0% |
| ! | TCAAATTGCACTTACAATTA+GGG | - | chr1_3:74788286-74788305 | Msa0140570:three_prime_UTR | 25.0% |
| !! | TCCAAAACATTTTGCAAATT+GGG | + | chr1_3:74788611-74788630 | None:intergenic | 25.0% |
| !! | TTCCAAAACATTTTGCAAAT+TGG | + | chr1_3:74788612-74788631 | None:intergenic | 25.0% |
| !!! | ATTCATTGAGTTTTGGTTAT+CGG | - | chr1_3:74788789-74788808 | Msa0140570:intron | 25.0% |
| !! | CAACTTAAGTTTCCAAATTT+TGG | + | chr1_3:74788910-74788929 | None:intergenic | 25.0% |
| ! | ATCCATAATAAACATTATGG+GGG | - | chr1_3:74789022-74789041 | Msa0140570:intron | 25.0% |
| ! | AGTTTATTAAGCCATCAATA+AGG | + | chr1_3:74789350-74789369 | None:intergenic | 25.0% |
| ! | AGGATACAAAAATAATTCCT+TGG | - | chr1_3:74789677-74789696 | Msa0140570:intron | 25.0% |
| ! | TGGTTTAAAAAGTAAAATCC+CGG | - | chr1_3:74789827-74789846 | Msa0140570:intron | 25.0% |
| ! | TGGTCTCTTGAATTTAAAAA+GGG | + | chr1_3:74789879-74789898 | None:intergenic | 25.0% |
| ! | TTGGTCTCTTGAATTTAAAA+AGG | + | chr1_3:74789880-74789899 | None:intergenic | 25.0% |
| !! | TATTTTCTGCTAATAAAGCA+AGG | - | chr1_3:74789917-74789936 | Msa0140570:intron | 25.0% |
| ! | AATACTCATGTCAAACTTAA+TGG | + | chr1_3:74789965-74789984 | None:intergenic | 25.0% |
| !!! | TCCATTTTTTTATAGAAGGA+AGG | - | chr1_3:74790095-74790114 | Msa0140570:intron | 25.0% |
| ! | TCCTTCCTTCTATAAAAAAA+TGG | + | chr1_3:74790099-74790118 | None:intergenic | 25.0% |
| ! | TAGAAGGAAGGAAAAAAAAT+TGG | - | chr1_3:74790107-74790126 | Msa0140570:intron | 25.0% |
| ! | GAAAGAGAAAAAGTCATATA+TGG | - | chr1_3:74790600-74790619 | Msa0140570:intron | 25.0% |
| ! | ATTAAGTGATATCATCAAAG+AGG | - | chr1_3:74790657-74790676 | Msa0140570:intron | 25.0% |
| !! | ATAATATTGGTGATACTGTT+TGG | - | chr1_3:74790835-74790854 | Msa0140570:intron | 25.0% |
| ! | ATGTAAGAAACAGAGAAAAT+GGG | + | chr1_3:74791035-74791054 | None:intergenic | 25.0% |
| ! | AATGTAAGAAACAGAGAAAA+TGG | + | chr1_3:74791036-74791055 | None:intergenic | 25.0% |
| ! | AAGTTTCCATGTATTTAGAA+GGG | + | chr1_3:74791081-74791100 | None:intergenic | 25.0% |
| ! | AAAGTTTCCATGTATTTAGA+AGG | + | chr1_3:74791082-74791101 | None:intergenic | 25.0% |
| ! | ATTAAGTAAAACAAAGGTTG+TGG | + | chr1_3:74791250-74791269 | None:intergenic | 25.0% |
| ! | TTATTTCCCATCTCTTTAAT+AGG | - | chr1_3:74791426-74791445 | Msa0140570:intron | 25.0% |
| ! | AGTTGAGGTTATATACTATT+TGG | - | chr1_3:74791494-74791513 | Msa0140570:intron | 25.0% |
| ! | AATTAAAATCTGCAAGGTTA+GGG | + | chr1_3:74791602-74791621 | None:intergenic | 25.0% |
| ! | TCATTATTTACAAACTGTGA+AGG | - | chr1_3:74791685-74791704 | Msa0140570:intron | 25.0% |
| !! | GATTTTCCTTTAAATATGCT+AGG | - | chr1_3:74792093-74792112 | Msa0140570:intron | 25.0% |
| ! | AAAATGCCTAGCATATTTAA+AGG | + | chr1_3:74792102-74792121 | None:intergenic | 25.0% |
| !! | ATATGCTAGGCATTTTTAAA+AGG | - | chr1_3:74792106-74792125 | Msa0140570:intron | 25.0% |
| ! | AACCCAATTAAACTAAATAC+TGG | + | chr1_3:74792132-74792151 | None:intergenic | 25.0% |
| !!! | CATATAGTGTTTATTTTGGT+TGG | - | chr1_3:74792205-74792224 | Msa0140570:intron | 25.0% |
| ! | TAGTTTAGATTCAGAAATCT+TGG | + | chr1_3:74792286-74792305 | None:intergenic | 25.0% |
| !!! | GTAGTGACTTTACTTATTTT+TGG | - | chr1_3:74792349-74792368 | Msa0140570:intron | 25.0% |
| !!! | AGTAGAGCTCATATTTTTAT+TGG | + | chr1_3:74792384-74792403 | None:intergenic | 25.0% |
| ! | TGTACATAAAATATAGATGG+TGG | + | chr1_3:74792501-74792520 | None:intergenic | 25.0% |
| ! | ACGTGTACATAAAATATAGA+TGG | + | chr1_3:74792504-74792523 | None:intergenic | 25.0% |
| !! | TCTTTTCATTATCTCTTTGT+AGG | + | chr1_3:74792755-74792774 | None:intergenic | 25.0% |
| !!! | AATCTTTATATTTTTGGGTG+GGG | - | chr1_3:74792800-74792819 | Msa0140570:intron | 25.0% |
| ! | ATAGTTACTACAAACATACA+TGG | + | chr1_3:74792919-74792938 | None:intergenic | 25.0% |
| ! | GTTTGTAGTAACTATTAAGT+AGG | - | chr1_3:74792924-74792943 | Msa0140570:intron | 25.0% |
| ! | TTGTAGTAACTATTAAGTAG+GGG | - | chr1_3:74792926-74792945 | Msa0140570:intron | 25.0% |
| ! | AAGCCTTTACTTGATTTATT+TGG | + | chr1_3:74792971-74792990 | None:intergenic | 25.0% |
| !! | ATTTTATATCTGTTCATGAC+AGG | - | chr1_3:74793299-74793318 | Msa0140570:CDS | 25.0% |
| ! | TATATAATCATAAAGCCATC+TGG | + | chr1_3:74793562-74793581 | None:intergenic | 25.0% |
| !!! | AGATGGCTTTATGATTATAT+AGG | - | chr1_3:74793561-74793580 | Msa0140570:intron | 25.0% |
| ! | ATGAAAAAAATGGAAGAAGT+GGG | - | chr1_3:74793596-74793615 | Msa0140570:intron | 25.0% |
| !! | TTAGATTTTGCTTCAAATGA+TGG | - | chr1_3:74793675-74793694 | Msa0140570:five_prime_UTR | 25.0% |
| ! | GAAAATACAGTGATAGTGAT+AGG | + | chr1_3:74788225-74788244 | None:intergenic | 30.0% |
| ACTGTCAATGAATACCAATT+TGG | - | chr1_3:74788448-74788467 | Msa0140570:exon | 30.0% | |
| TATAGTGAGAATTCAAAGTG+CGG | - | chr1_3:74788674-74788693 | Msa0140570:CDS | 30.0% | |
| AAGAACAAGAGAAAGAGAAA+GGG | - | chr1_3:74788722-74788741 | Msa0140570:intron | 30.0% | |
| CTGTCTATATTTGTGACTTT+AGG | + | chr1_3:74788755-74788774 | None:intergenic | 30.0% | |
| CTAAAGTCACAAATATAGAC+AGG | - | chr1_3:74788753-74788772 | Msa0140570:intron | 30.0% | |
| ! | ATCCTACATTCATTGAGTTT+TGG | - | chr1_3:74788782-74788801 | Msa0140570:intron | 30.0% |
| AACCAAAACTCAATGAATGT+AGG | + | chr1_3:74788787-74788806 | None:intergenic | 30.0% | |
| !!! | TTTTAGGATGAACTATGCTT+TGG | - | chr1_3:74788821-74788840 | Msa0140570:intron | 30.0% |
| ! | TTTTACCCATCTCCAAAATT+TGG | - | chr1_3:74788895-74788914 | Msa0140570:intron | 30.0% |
| !! | AGTTTCCAAATTTTGGAGAT+GGG | + | chr1_3:74788903-74788922 | None:intergenic | 30.0% |
| !! | AAGTTTCCAAATTTTGGAGA+TGG | + | chr1_3:74788904-74788923 | None:intergenic | 30.0% |
| CTAGAGTATAGTAATTTAGC+TGG | - | chr1_3:74788938-74788957 | Msa0140570:intron | 30.0% | |
| !! | ATTTTTGGATTGGATGATGA+TGG | - | chr1_3:74788980-74788999 | Msa0140570:intron | 30.0% |
| !!! | ATTTTTTTTATTGTGCGGGA+TGG | - | chr1_3:74789149-74789168 | Msa0140570:CDS | 30.0% |
| ! | AAAAAGCATAAGACTAAGCT+TGG | + | chr1_3:74789307-74789326 | None:intergenic | 30.0% |
| !!! | TCAATAAGGTTTTTAAGGCT+AGG | + | chr1_3:74789336-74789355 | None:intergenic | 30.0% |
| AGCCTTAAAAACCTTATTGA+TGG | - | chr1_3:74789336-74789355 | Msa0140570:intron | 30.0% | |
| ! | AGCCATCAATAAGGTTTTTA+AGG | + | chr1_3:74789341-74789360 | None:intergenic | 30.0% |
| TAAGTATTTAAGGGTCTGTT+TGG | - | chr1_3:74789415-74789434 | Msa0140570:intron | 30.0% | |
| AAGTATTTAAGGGTCTGTTT+GGG | - | chr1_3:74789416-74789435 | Msa0140570:intron | 30.0% | |
| TAATTCCCATCATATATTCC+CGG | + | chr1_3:74789713-74789732 | None:intergenic | 30.0% | |
| ! | ATGATGGGAATTATATTCCT+AGG | - | chr1_3:74789720-74789739 | Msa0140570:intron | 30.0% |
| TGGTTAACAATTTGAATTCC+TGG | - | chr1_3:74789763-74789782 | Msa0140570:intron | 30.0% | |
| GGTTAACAATTTGAATTCCT+GGG | - | chr1_3:74789764-74789783 | Msa0140570:intron | 30.0% | |
| AATTTACAAAAGAAGTTCCC+AGG | + | chr1_3:74789784-74789803 | None:intergenic | 30.0% | |
| TCTTGAGAATGCTAAAAACA+TGG | - | chr1_3:74789803-74789822 | Msa0140570:intron | 30.0% | |
| !!! | CGGTTCCATTTTTTTATAGA+AGG | - | chr1_3:74790091-74790110 | Msa0140570:intron | 30.0% |
| AAGGAAGGAAAAAAAATTGG+AGG | - | chr1_3:74790110-74790129 | Msa0140570:intron | 30.0% | |
| AGGAAGGAAAAAAAATTGGA+GGG | - | chr1_3:74790111-74790130 | Msa0140570:intron | 30.0% | |
| !!! | TTTTTTATTCCAGTGAGAGA+GGG | + | chr1_3:74790221-74790240 | None:intergenic | 30.0% |
| !!! | ATTTTTTATTCCAGTGAGAG+AGG | + | chr1_3:74790222-74790241 | None:intergenic | 30.0% |
| TCTCTCACTGGAATAAAAAA+TGG | - | chr1_3:74790221-74790240 | Msa0140570:intron | 30.0% | |
| AATAAAAAATGGCAGATCGT+GGG | - | chr1_3:74790232-74790251 | Msa0140570:intron | 30.0% | |
| AGGAAACTTAAAATTTGCCT+GGG | + | chr1_3:74790286-74790305 | None:intergenic | 30.0% | |
| AAGGAAACTTAAAATTTGCC+TGG | + | chr1_3:74790287-74790306 | None:intergenic | 30.0% | |
| GAAAAACATATTCCAGTGTT+TGG | + | chr1_3:74790314-74790333 | None:intergenic | 30.0% | |
| ! | AACACTGGAATATGTTTTTC+CGG | - | chr1_3:74790314-74790333 | Msa0140570:intron | 30.0% |
| AAGAATGCAAAACTCTTATG+GGG | + | chr1_3:74790383-74790402 | None:intergenic | 30.0% | |
| GAAGAATGCAAAACTCTTAT+GGG | + | chr1_3:74790384-74790403 | None:intergenic | 30.0% | |
| AGAAGAATGCAAAACTCTTA+TGG | + | chr1_3:74790385-74790404 | None:intergenic | 30.0% | |
| CTAAATTTGAGTGCATCATA+GGG | + | chr1_3:74790691-74790710 | None:intergenic | 30.0% | |
| ACTAAATTTGAGTGCATCAT+AGG | + | chr1_3:74790692-74790711 | None:intergenic | 30.0% | |
| TCTTTAAGTAGACAGATACT+GGG | + | chr1_3:74790863-74790882 | None:intergenic | 30.0% | |
| ATCTTTAAGTAGACAGATAC+TGG | + | chr1_3:74790864-74790883 | None:intergenic | 30.0% | |
| TGGATGAAAGAAAAACAAGA+CGG | + | chr1_3:74790917-74790936 | None:intergenic | 30.0% | |
| GTAAGAAATTAAGTGATGAG+AGG | + | chr1_3:74790989-74791008 | None:intergenic | 30.0% | |
| ! | TTCAAATCATCTTCGTTTTC+TGG | - | chr1_3:74791181-74791200 | Msa0140570:CDS | 30.0% |
| GAGGTTATATACTATTTGGA+CGG | - | chr1_3:74791498-74791517 | Msa0140570:intron | 30.0% | |
| AGAAATTAAAAATGGCTGCA+TGG | + | chr1_3:74791562-74791581 | None:intergenic | 30.0% | |
| GAATTAAAATCTGCAAGGTT+AGG | + | chr1_3:74791603-74791622 | None:intergenic | 30.0% | |
| AGGCTTAGAAAATCGATTAT+GGG | + | chr1_3:74791784-74791803 | None:intergenic | 30.0% | |
| ! | AGGCCAGTATTTAGTTTAAT+TGG | - | chr1_3:74792126-74792145 | Msa0140570:intron | 30.0% |
| ! | GGCCAGTATTTAGTTTAATT+GGG | - | chr1_3:74792127-74792146 | Msa0140570:intron | 30.0% |
| AAAGGAAAATGGAAGATTCT+AGG | + | chr1_3:74792260-74792279 | None:intergenic | 30.0% | |
| !! | AATTGAGGGTATCATATCAT+TGG | - | chr1_3:74792322-74792341 | Msa0140570:intron | 30.0% |
| ATACATTGTAAATTTGCACG+CGG | - | chr1_3:74792614-74792633 | Msa0140570:intron | 30.0% | |
| TATTAATGCAGAAGCAATTC+AGG | - | chr1_3:74793119-74793138 | Msa0140570:CDS | 30.0% | |
| TGAGAAGAATCATCTTTCTT+TGG | + | chr1_3:74793172-74793191 | None:intergenic | 30.0% | |
| AAGAAAGATGATTCTTCTCA+AGG | - | chr1_3:74793172-74793191 | Msa0140570:CDS | 30.0% | |
| AAATAGGAACACATGAAAGA+AGG | + | chr1_3:74793496-74793515 | None:intergenic | 30.0% | |
| TTCTTTCATGTGTTCCTATT+TGG | - | chr1_3:74793495-74793514 | Msa0140570:intron | 30.0% | |
| AAAGAAACGAGGAAATGAAA+GGG | + | chr1_3:74793529-74793548 | None:intergenic | 30.0% | |
| TAAAGAAACGAGGAAATGAA+AGG | + | chr1_3:74793530-74793549 | None:intergenic | 30.0% | |
| TAGGGCAAACATGAAAAAAA+TGG | - | chr1_3:74793586-74793605 | Msa0140570:intron | 30.0% | |
| CATGAAAAAAATGGAAGAAG+TGG | - | chr1_3:74793595-74793614 | Msa0140570:intron | 30.0% | |
| TGAAAAAAATGGAAGAAGTG+GGG | - | chr1_3:74793597-74793616 | Msa0140570:intron | 30.0% | |
| GAATGTATCGTTGTTATAGT+TGG | - | chr1_3:74793629-74793648 | Msa0140570:intron | 30.0% | |
| AAAATCTAATGAAACACTCG+TGG | + | chr1_3:74793664-74793683 | None:intergenic | 30.0% | |
| AATTCGAATTATTGGGAGAC+AGG | - | chr1_3:74788090-74788109 | Msa0140570:three_prime_UTR | 35.0% | |
| ATTCGAATTATTGGGAGACA+GGG | - | chr1_3:74788091-74788110 | Msa0140570:three_prime_UTR | 35.0% | |
| !! | ATGCTGATTCAGTGTTTGTA+AGG | + | chr1_3:74788151-74788170 | None:intergenic | 35.0% |
| ! | TCTTTTCTCAAGCTCTTCTA+AGG | - | chr1_3:74788187-74788206 | Msa0140570:three_prime_UTR | 35.0% |
| ! | CAACGTGCATTGATAAAACT+CGG | - | chr1_3:74788312-74788331 | Msa0140570:three_prime_UTR | 35.0% |
| GACATGATTGATGTTGAAGA+AGG | - | chr1_3:74788572-74788591 | Msa0140570:CDS | 35.0% | |
| ! | GCCCAATTTGCAAAATGTTT+TGG | - | chr1_3:74788607-74788626 | Msa0140570:CDS | 35.0% |
| GAAGAACAAGAGAAAGAGAA+AGG | - | chr1_3:74788721-74788740 | Msa0140570:intron | 35.0% | |
| TCTACAGTACACACCTTAAA+GGG | + | chr1_3:74788847-74788866 | None:intergenic | 35.0% | |
| ATCTACAGTACACACCTTAA+AGG | + | chr1_3:74788848-74788867 | None:intergenic | 35.0% | |
| !! | TTGGATGATGATGGAGAATT+TGG | - | chr1_3:74788989-74789008 | Msa0140570:intron | 35.0% |
| !! | TGGATGATGATGGAGAATTT+GGG | - | chr1_3:74788990-74789009 | Msa0140570:intron | 35.0% |
| TGCCCCCATAATGTTTATTA+TGG | + | chr1_3:74789027-74789046 | None:intergenic | 35.0% | |
| ! | GGCATTTGTTTGAAGTTTGA+GGG | - | chr1_3:74789043-74789062 | Msa0140570:intron | 35.0% |
| !! | GAGAAGTATCTGCTATTCAT+TGG | - | chr1_3:74789269-74789288 | Msa0140570:intron | 35.0% |
| GACTGAATTCCACATTCTAT+TGG | + | chr1_3:74789389-74789408 | None:intergenic | 35.0% | |
| ! | AAAACAAACACCCCCTTTTA+GGG | + | chr1_3:74789656-74789675 | None:intergenic | 35.0% |
| ! | TAAAACAAACACCCCCTTTT+AGG | + | chr1_3:74789657-74789676 | None:intergenic | 35.0% |
| !!! | AAAAGGGGGTGTTTGTTTTA+AGG | - | chr1_3:74789657-74789676 | Msa0140570:intron | 35.0% |
| ATTCCTTGGAATAACTTTCC+CGG | - | chr1_3:74789691-74789710 | Msa0140570:intron | 35.0% | |
| AATTCCCATCATATATTCCC+GGG | + | chr1_3:74789712-74789731 | None:intergenic | 35.0% | |
| GAGAATGCTAAAAACATGGT+TGG | - | chr1_3:74789807-74789826 | Msa0140570:intron | 35.0% | |
| AATCAGCATTCATATGCAAG+CGG | - | chr1_3:74790071-74790090 | Msa0140570:intron | 35.0% | |
| GGAAGGAAAAAAAATTGGAG+GGG | - | chr1_3:74790112-74790131 | Msa0140570:intron | 35.0% | |
| ! | TTTTTATTCCAGTGAGAGAG+GGG | + | chr1_3:74790220-74790239 | None:intergenic | 35.0% |
| GAATAAAAAATGGCAGATCG+TGG | - | chr1_3:74790231-74790250 | Msa0140570:intron | 35.0% | |
| TATTCCAGTGTTTGGTAAGA+AGG | + | chr1_3:74790306-74790325 | None:intergenic | 35.0% | |
| TTTGTTTCCGAGACATGAAA+TGG | + | chr1_3:74790358-74790377 | None:intergenic | 35.0% | |
| TGAATGTGAGCATAAAGTCA+CGG | - | chr1_3:74790463-74790482 | Msa0140570:intron | 35.0% | |
| ATTTGATACAGGGACAAACA+AGG | + | chr1_3:74790489-74790508 | None:intergenic | 35.0% | |
| ATATATGGTATACACTGCTG+CGG | - | chr1_3:74790615-74790634 | Msa0140570:intron | 35.0% | |
| TGTGAAATACCATTGTCACT+TGG | - | chr1_3:74790757-74790776 | Msa0140570:intron | 35.0% | |
| ! | CATTTGAAGCAGTATTGCTT+AGG | + | chr1_3:74790809-74790828 | None:intergenic | 35.0% |
| !! | TAAAGATGTTATTTCGGTGC+AGG | - | chr1_3:74790877-74790896 | Msa0140570:intron | 35.0% |
| TGAAAGAAAAACAAGACGGT+TGG | + | chr1_3:74790913-74790932 | None:intergenic | 35.0% | |
| TTTCATCCAAAGCTGTTTGA+AGG | - | chr1_3:74790928-74790947 | Msa0140570:intron | 35.0% | |
| AAGAAACAGAGAAAATGGGT+GGG | + | chr1_3:74791031-74791050 | None:intergenic | 35.0% | |
| TAAGAAACAGAGAAAATGGG+TGG | + | chr1_3:74791032-74791051 | None:intergenic | 35.0% | |
| ATCCTTCCCTTCTAAATACA+TGG | - | chr1_3:74791072-74791091 | Msa0140570:intron | 35.0% | |
| TTCCATGTATTTAGAAGGGA+AGG | + | chr1_3:74791077-74791096 | None:intergenic | 35.0% | |
| TTGACGGTATAACTGAGATA+TGG | - | chr1_3:74791136-74791155 | Msa0140570:intron | 35.0% | |
| ! | CAAATTTTGTCCAGTTCCAA+TGG | - | chr1_3:74791280-74791299 | Msa0140570:intron | 35.0% |
| GAAAGTTGTCATAAGACCAT+TGG | + | chr1_3:74791299-74791318 | None:intergenic | 35.0% | |
| CACAGTCCTATTAAAGAGAT+GGG | + | chr1_3:74791435-74791454 | None:intergenic | 35.0% | |
| TCACAGTCCTATTAAAGAGA+TGG | + | chr1_3:74791436-74791455 | None:intergenic | 35.0% | |
| ATAGGACTGTGACTATGATT+TGG | - | chr1_3:74791444-74791463 | Msa0140570:intron | 35.0% | |
| ACTCTCACCTTTCCTTTAAA+AGG | + | chr1_3:74791477-74791496 | None:intergenic | 35.0% | |
| GATAAGCATAACCAGATCAA+AGG | + | chr1_3:74791525-74791544 | None:intergenic | 35.0% | |
| CACGCGTCAGAAATTAAAAA+TGG | + | chr1_3:74791570-74791589 | None:intergenic | 35.0% | |
| ! | GTCTGGAATTAAAATCTGCA+AGG | + | chr1_3:74791608-74791627 | None:intergenic | 35.0% |
| GAAGTCACTATGTATGAACA+TGG | + | chr1_3:74791746-74791765 | None:intergenic | 35.0% | |
| GCTTAGAAAATCGATTATGG+GGG | + | chr1_3:74791782-74791801 | None:intergenic | 35.0% | |
| GGCTTAGAAAATCGATTATG+GGG | + | chr1_3:74791783-74791802 | None:intergenic | 35.0% | |
| CAGGCTTAGAAAATCGATTA+TGG | + | chr1_3:74791785-74791804 | None:intergenic | 35.0% | |
| ! | AATTTCAGCTCTGACATTGT+TGG | + | chr1_3:74791888-74791907 | None:intergenic | 35.0% |
| TTTACCGTCAAACCTAAATG+TGG | - | chr1_3:74792150-74792169 | Msa0140570:intron | 35.0% | |
| TTACCGTCAAACCTAAATGT+GGG | - | chr1_3:74792151-74792170 | Msa0140570:intron | 35.0% | |
| ! | TATCCCACATTTAGGTTTGA+CGG | + | chr1_3:74792157-74792176 | None:intergenic | 35.0% |
| AATCTTGGCACAAAGGAAAA+TGG | + | chr1_3:74792271-74792290 | None:intergenic | 35.0% | |
| ATTCAGAAATCTTGGCACAA+AGG | + | chr1_3:74792278-74792297 | None:intergenic | 35.0% | |
| !!! | GTTTTAGGTTGATGCAATAC+AGG | - | chr1_3:74792639-74792658 | Msa0140570:intron | 35.0% |
| CATACTGTGGAACATCATAA+AGG | - | chr1_3:74792714-74792733 | Msa0140570:intron | 35.0% | |
| ATTATCTCTTTGTAGGCCTT+TGG | + | chr1_3:74792748-74792767 | None:intergenic | 35.0% | |
| GAAAAGAGCAAAAGAGTTTG+AGG | - | chr1_3:74792768-74792787 | Msa0140570:intron | 35.0% | |
| !! | TGGTTGGTGACAACTAAATT+CGG | - | chr1_3:74792858-74792877 | Msa0140570:intron | 35.0% |
| TTACTACAAACATACATGGC+TGG | + | chr1_3:74792915-74792934 | None:intergenic | 35.0% | |
| AGATGATTCTTCTCAAGGTT+TGG | - | chr1_3:74793177-74793196 | Msa0140570:CDS | 35.0% | |
| TTGCATTTCTGATGCAAGAA+AGG | + | chr1_3:74793248-74793267 | None:intergenic | 35.0% | |
| AATGCAAAATCAACACGAAC+CGG | - | chr1_3:74793261-74793280 | Msa0140570:CDS | 35.0% | |
| TATCTGTTCATGACAGGTTA+AGG | - | chr1_3:74793305-74793324 | Msa0140570:CDS | 35.0% | |
| AGATCATCATCATAGGAAAC+AGG | + | chr1_3:74793334-74793353 | None:intergenic | 35.0% | |
| ! | TCCTATGATGATGATCTACT+TGG | - | chr1_3:74793337-74793356 | Msa0140570:exon | 35.0% |
| TCCAAGTAGATCATCATCAT+AGG | + | chr1_3:74793341-74793360 | None:intergenic | 35.0% | |
| ! | TTTTTCTCCTTCTTAGACAG+AGG | - | chr1_3:74793426-74793445 | Msa0140570:intron | 35.0% |
| GCAAGGTAAATAAAGAAACG+AGG | + | chr1_3:74793540-74793559 | None:intergenic | 35.0% | |
| ! | TCTTTATTTACCTTGCCAGA+TGG | - | chr1_3:74793544-74793563 | Msa0140570:intron | 35.0% |
| GAACTTGTCTCAAATGGATA+CGG | - | chr1_3:74793708-74793727 | Msa0140570:five_prime_UTR | 35.0% | |
| CTGATTCAGTGTTTGTAAGG+CGG | + | chr1_3:74788148-74788167 | None:intergenic | 40.0% | |
| GCATCAAGGGAAATCCAAAT+TGG | + | chr1_3:74788465-74788484 | None:intergenic | 40.0% | |
| ATTTGGATTTCCCTTGATGC+AGG | - | chr1_3:74788465-74788484 | Msa0140570:CDS | 40.0% | |
| AAACACCTAACCTGCATCAA+GGG | + | chr1_3:74788478-74788497 | None:intergenic | 40.0% | |
| AGGTGTTTGACTGTTTGTCA+TGG | - | chr1_3:74788490-74788509 | Msa0140570:CDS | 40.0% | |
| TGTTTGACTGTTTGTCATGG+AGG | - | chr1_3:74788493-74788512 | Msa0140570:CDS | 40.0% | |
| TGTTGAAGAAGGAGAGTTAG+TGG | - | chr1_3:74788583-74788602 | Msa0140570:CDS | 40.0% | |
| !!! | GTTTTGGAACAAAGTAGTGC+TGG | - | chr1_3:74788623-74788642 | Msa0140570:CDS | 40.0% |
| AAGAGAAAGAGAAAGGGTTC+AGG | - | chr1_3:74788728-74788747 | Msa0140570:intron | 40.0% | |
| AACTATGCTTTGGCCCTTTA+AGG | - | chr1_3:74788831-74788850 | Msa0140570:intron | 40.0% | |
| !! | GGATGATGATGGAGAATTTG+GGG | - | chr1_3:74788991-74789010 | Msa0140570:intron | 40.0% |
| !! | GATGATGATGGAGAATTTGG+GGG | - | chr1_3:74788992-74789011 | Msa0140570:intron | 40.0% |
| ! | GGGCATTTGTTTGAAGTTTG+AGG | - | chr1_3:74789042-74789061 | Msa0140570:intron | 40.0% |
| GCAATTTCTGTGTGCAAGTA+TGG | - | chr1_3:74789247-74789266 | Msa0140570:intron | 40.0% | |
| ATTCTATTGGATCACAGAGG+TGG | + | chr1_3:74789376-74789395 | None:intergenic | 40.0% | |
| CACATTCTATTGGATCACAG+AGG | + | chr1_3:74789379-74789398 | None:intergenic | 40.0% | |
| CTCTGTGATCCAATAGAATG+TGG | - | chr1_3:74789377-74789396 | Msa0140570:intron | 40.0% | |
| TATTTAAGGGTCTGTTTGGG+AGG | - | chr1_3:74789419-74789438 | Msa0140570:intron | 40.0% | |
| ATTTAAGGGTCTGTTTGGGA+GGG | - | chr1_3:74789420-74789439 | Msa0140570:intron | 40.0% | |
| CATCCAAACACACCCTAAAA+GGG | - | chr1_3:74789641-74789660 | Msa0140570:intron | 40.0% | |
| ATCCAAACACACCCTAAAAG+GGG | - | chr1_3:74789642-74789661 | Msa0140570:intron | 40.0% | |
| TTCCTTGGAATAACTTTCCC+GGG | - | chr1_3:74789692-74789711 | Msa0140570:intron | 40.0% | |
| ACTTTCCCGGGAATATATGA+TGG | - | chr1_3:74789704-74789723 | Msa0140570:intron | 40.0% | |
| CTTTCCCGGGAATATATGAT+GGG | - | chr1_3:74789705-74789724 | Msa0140570:intron | 40.0% | |
| CACCAGAAACAACATGCTAA+TGG | - | chr1_3:74789999-74790018 | Msa0140570:intron | 40.0% | |
| !! | TGCCATTAGCATGTTGTTTC+TGG | + | chr1_3:74790004-74790023 | None:intergenic | 40.0% |
| GTTGGAAAATCTCTATTCCC+AGG | + | chr1_3:74790198-74790217 | None:intergenic | 40.0% | |
| TCGTGGGTCAAATAAATTCC+TGG | - | chr1_3:74790248-74790267 | Msa0140570:intron | 40.0% | |
| CGTGGGTCAAATAAATTCCT+GGG | - | chr1_3:74790249-74790268 | Msa0140570:intron | 40.0% | |
| CCTGGGAATAAAAAATACCC+AGG | + | chr1_3:74790269-74790288 | None:intergenic | 40.0% | |
| !!! | CCTGGGTATTTTTTATTCCC+AGG | - | chr1_3:74790266-74790285 | Msa0140570:intron | 40.0% |
| GTTTCCTTCTTACCAAACAC+TGG | - | chr1_3:74790299-74790318 | Msa0140570:intron | 40.0% | |
| ! | AAATGGATTCCCAGGAATAG+AGG | + | chr1_3:74790341-74790360 | None:intergenic | 40.0% |
| TGGGAATCCATTTCATGTCT+CGG | - | chr1_3:74790348-74790367 | Msa0140570:intron | 40.0% | |
| ATTTCACTTCGAGGTAGGTT+GGG | + | chr1_3:74790444-74790463 | None:intergenic | 40.0% | |
| CATTCATTTCACTTCGAGGT+AGG | + | chr1_3:74790449-74790468 | None:intergenic | 40.0% | |
| CTCACATTCATTTCACTTCG+AGG | + | chr1_3:74790453-74790472 | None:intergenic | 40.0% | |
| GCTGCTGTACATTTGATACA+GGG | + | chr1_3:74790499-74790518 | None:intergenic | 40.0% | |
| AGCTGCTGTACATTTGATAC+AGG | + | chr1_3:74790500-74790519 | None:intergenic | 40.0% | |
| TTTCTCTTTCAGATGACGAC+AGG | + | chr1_3:74790590-74790609 | None:intergenic | 40.0% | |
| TATATGGTATACACTGCTGC+GGG | - | chr1_3:74790616-74790635 | Msa0140570:intron | 40.0% | |
| ! | TACCATTGTCACTTGGAAGT+TGG | - | chr1_3:74790764-74790783 | Msa0140570:intron | 40.0% |
| TTCCAACTTCCAAGTGACAA+TGG | + | chr1_3:74790769-74790788 | None:intergenic | 40.0% | |
| TTGAAGCAGTATTGCTTAGG+CGG | + | chr1_3:74790806-74790825 | None:intergenic | 40.0% | |
| CGAAATCCTTCAAACAGCTT+TGG | + | chr1_3:74790937-74790956 | None:intergenic | 40.0% | |
| GGGAAACAGACAAAAAGCAA+GGG | + | chr1_3:74791011-74791030 | None:intergenic | 40.0% | |
| TGGGAAACAGACAAAAAGCA+AGG | + | chr1_3:74791012-74791031 | None:intergenic | 40.0% | |
| TTGCCAAGATTGATCGTCAA+TGG | - | chr1_3:74791103-74791122 | Msa0140570:intron | 40.0% | |
| ! | CAATGGTGGTGTTAGTTTGA+CGG | - | chr1_3:74791120-74791139 | Msa0140570:intron | 40.0% |
| TGTCATAAGACCATTGGAAC+TGG | + | chr1_3:74791293-74791312 | None:intergenic | 40.0% | |
| !! | TTTGGAGCCATGCCTTTTAA+AGG | - | chr1_3:74791462-74791481 | Msa0140570:intron | 40.0% |
| !! | AGCCATGCCTTTTAAAGGAA+AGG | - | chr1_3:74791467-74791486 | Msa0140570:intron | 40.0% |
| ! | CACCTTTCCTTTAAAAGGCA+TGG | + | chr1_3:74791472-74791491 | None:intergenic | 40.0% |
| TAAAGGAAAGGTGAGAGTTG+AGG | - | chr1_3:74791479-74791498 | Msa0140570:intron | 40.0% | |
| !! | TGCTTGATCTTTGGTGTTCT+TGG | - | chr1_3:74791652-74791671 | Msa0140570:intron | 40.0% |
| AGTGAGACTATCCCACATTT+AGG | + | chr1_3:74792165-74792184 | None:intergenic | 40.0% | |
| ! | TTGGGAAAGCCACTCAATTT+TGG | - | chr1_3:74792224-74792243 | Msa0140570:intron | 40.0% |
| AGCAGATGACCAAAATTGAG+TGG | + | chr1_3:74792236-74792255 | None:intergenic | 40.0% | |
| TAAACTAGCATTGTCGCAGT+GGG | - | chr1_3:74792299-74792318 | Msa0140570:intron | 40.0% | |
| TATGTGCCATATGCTTTGCA+TGG | - | chr1_3:74792457-74792476 | Msa0140570:intron | 40.0% | |
| GTGGAACATCATAAAGGTTC+AGG | - | chr1_3:74792720-74792739 | Msa0140570:intron | 40.0% | |
| CATAAAGGTTCAGGAACCAA+AGG | - | chr1_3:74792729-74792748 | Msa0140570:intron | 40.0% | |
| !!! | CTTTATATTTTTGGGTGGGG+AGG | - | chr1_3:74792803-74792822 | Msa0140570:intron | 40.0% |
| CATCTTGTCTCGTTGATACT+TGG | - | chr1_3:74792838-74792857 | Msa0140570:intron | 40.0% | |
| TTGTCTCGTTGATACTTGGT+TGG | - | chr1_3:74792842-74792861 | Msa0140570:intron | 40.0% | |
| !! | GGTTGGTGACAACTAAATTC+GGG | - | chr1_3:74792859-74792878 | Msa0140570:intron | 40.0% |
| ATCACTGCCAGCAAATGATA+AGG | + | chr1_3:74793203-74793222 | None:intergenic | 40.0% | |
| AGTCATGTTGCATCATTGAC+TGG | + | chr1_3:74793370-74793389 | None:intergenic | 40.0% | |
| CACTAAACCTCTGTCTAAGA+AGG | + | chr1_3:74793436-74793455 | None:intergenic | 40.0% | |
| AATCATAAAGCCATCTGGCA+AGG | + | chr1_3:74793557-74793576 | None:intergenic | 40.0% | |
| ! | TGAAACACTCGTGGCAATTT+TGG | + | chr1_3:74793655-74793674 | None:intergenic | 40.0% |
| ! | AGTGCTGAACTTGTCTCAAA+TGG | - | chr1_3:74793702-74793721 | Msa0140570:five_prime_UTR | 40.0% |
| AATTATTGGGAGACAGGGAG+AGG | - | chr1_3:74788096-74788115 | Msa0140570:three_prime_UTR | 45.0% | |
| ATTCAGTGTTTGTAAGGCGG+TGG | + | chr1_3:74788145-74788164 | None:intergenic | 45.0% | |
| GATTTCCCTTGATGCAGGTT+AGG | - | chr1_3:74788470-74788489 | Msa0140570:CDS | 45.0% | |
| CAAACACCTAACCTGCATCA+AGG | + | chr1_3:74788479-74788498 | None:intergenic | 45.0% | |
| TGACTGTTTGTCATGGAGGA+AGG | - | chr1_3:74788497-74788516 | Msa0140570:CDS | 45.0% | |
| GACTGTTTGTCATGGAGGAA+GGG | - | chr1_3:74788498-74788517 | Msa0140570:CDS | 45.0% | |
| ACTGTTTGTCATGGAGGAAG+GGG | - | chr1_3:74788499-74788518 | Msa0140570:CDS | 45.0% | |
| TTTAAGGGTCTGTTTGGGAG+GGG | - | chr1_3:74789421-74789440 | Msa0140570:intron | 45.0% | |
| !!! | TTGGATGGAGGGTTTTGGAA+GGG | + | chr1_3:74789628-74789647 | None:intergenic | 45.0% |
| !!! | TTTGGATGGAGGGTTTTGGA+AGG | + | chr1_3:74789629-74789648 | None:intergenic | 45.0% |
| ! | TGTGTTTGGATGGAGGGTTT+TGG | + | chr1_3:74789633-74789652 | None:intergenic | 45.0% |
| TTAGGGTGTGTTTGGATGGA+GGG | + | chr1_3:74789639-74789658 | None:intergenic | 45.0% | |
| ! | TTTAGGGTGTGTTTGGATGG+AGG | + | chr1_3:74789640-74789659 | None:intergenic | 45.0% |
| !!! | CCTTTTAGGGTGTGTTTGGA+TGG | + | chr1_3:74789643-74789662 | None:intergenic | 45.0% |
| CCATCCAAACACACCCTAAA+AGG | - | chr1_3:74789640-74789659 | Msa0140570:intron | 45.0% | |
| TCCAAACACACCCTAAAAGG+GGG | - | chr1_3:74789643-74789662 | Msa0140570:intron | 45.0% | |
| TTCCCGGGAAAGTTATTCCA+AGG | + | chr1_3:74789697-74789716 | None:intergenic | 45.0% | |
| AGAACGTGTGGGGTAAAGTA+GGG | - | chr1_3:74790135-74790154 | Msa0140570:intron | 45.0% | |
| !! | TGGGGTAAAGTAGGGGTATT+AGG | - | chr1_3:74790143-74790162 | Msa0140570:intron | 45.0% |
| !! | GGGGTAAAGTAGGGGTATTA+GGG | - | chr1_3:74790144-74790163 | Msa0140570:intron | 45.0% |
| !! | GGGTAAAGTAGGGGTATTAG+GGG | - | chr1_3:74790145-74790164 | Msa0140570:intron | 45.0% |
| ! | GGGGATTTTTACTCTGAACG+TGG | - | chr1_3:74790164-74790183 | Msa0140570:intron | 45.0% |
| TGAACGTGGAGTTCATTCCT+GGG | - | chr1_3:74790178-74790197 | Msa0140570:intron | 45.0% | |
| ! | TTTTTCCGGTCCTCTATTCC+TGG | - | chr1_3:74790328-74790347 | Msa0140570:intron | 45.0% |
| ! | TTTTCCGGTCCTCTATTCCT+GGG | - | chr1_3:74790329-74790348 | Msa0140570:intron | 45.0% |
| ! | GAGACATGAAATGGATTCCC+AGG | + | chr1_3:74790349-74790368 | None:intergenic | 45.0% |
| CATTTCACTTCGAGGTAGGT+TGG | + | chr1_3:74790445-74790464 | None:intergenic | 45.0% | |
| TGAAGCAGTATTGCTTAGGC+GGG | + | chr1_3:74790805-74790824 | None:intergenic | 45.0% | |
| CCACCATTGACGATCAATCT+TGG | + | chr1_3:74791109-74791128 | None:intergenic | 45.0% | |
| CCAAGATTGATCGTCAATGG+TGG | - | chr1_3:74791106-74791125 | Msa0140570:intron | 45.0% | |
| ATCACGTGACGTGTTTCAAG+TGG | + | chr1_3:74791222-74791241 | None:intergenic | 45.0% | |
| ACTTGAAACACGTCACGTGA+TGG | - | chr1_3:74791221-74791240 | Msa0140570:CDS | 45.0% | |
| AAAACAACGAACACTCCAGC+AGG | + | chr1_3:74791377-74791396 | None:intergenic | 45.0% | |
| ATTTGGACGGACCTTTGATC+TGG | - | chr1_3:74791511-74791530 | Msa0140570:intron | 45.0% | |
| CTGCATGGTACTAGAAAGAG+TGG | + | chr1_3:74791547-74791566 | None:intergenic | 45.0% | |
| GGAAGGAGCAAACTATTGTC+TGG | + | chr1_3:74791625-74791644 | None:intergenic | 45.0% | |
| AGATCAAGCAGAGGATTGGA+AGG | + | chr1_3:74791642-74791661 | None:intergenic | 45.0% | |
| CCAAAGATCAAGCAGAGGAT+TGG | + | chr1_3:74791646-74791665 | None:intergenic | 45.0% | |
| CCAATCCTCTGCTTGATCTT+TGG | - | chr1_3:74791643-74791662 | Msa0140570:intron | 45.0% | |
| GAACACCAAAGATCAAGCAG+AGG | + | chr1_3:74791651-74791670 | None:intergenic | 45.0% | |
| ! | TTTTCTAAGCCTGTGTGCGT+TGG | - | chr1_3:74791792-74791811 | Msa0140570:intron | 45.0% |
| GGCAAAACTGGCTACACTAA+TGG | + | chr1_3:74791849-74791868 | None:intergenic | 45.0% | |
| TACACTGAAGTGGGCAAAAC+TGG | + | chr1_3:74791861-74791880 | None:intergenic | 45.0% | |
| GTTGGTTGCTACACTGAAGT+GGG | + | chr1_3:74791870-74791889 | None:intergenic | 45.0% | |
| ! | TGTTGGTTGCTACACTGAAG+TGG | + | chr1_3:74791871-74791890 | None:intergenic | 45.0% |
| CTAAACTAGCATTGTCGCAG+TGG | - | chr1_3:74792298-74792317 | Msa0140570:intron | 45.0% | |
| ATTGTCGCAGTGGGAATTGA+GGG | - | chr1_3:74792308-74792327 | Msa0140570:intron | 45.0% | |
| ACGGTTCCATGCAAAGCATA+TGG | + | chr1_3:74792466-74792485 | None:intergenic | 45.0% | |
| !! | ATGGTGGACACTATGCATCA+CGG | + | chr1_3:74792485-74792504 | None:intergenic | 45.0% |
| CATTGTAAATTTGCACGCGG+AGG | - | chr1_3:74792617-74792636 | Msa0140570:intron | 45.0% | |
| ! | AATTTGCACGCGGAGGTTTT+AGG | - | chr1_3:74792624-74792643 | Msa0140570:intron | 45.0% |
| GTTGATGCAATACAGGCTTG+TGG | - | chr1_3:74792646-74792665 | Msa0140570:intron | 45.0% | |
| ! | GTCTACCATCAGCAGTCTTT+TGG | + | chr1_3:74792675-74792694 | None:intergenic | 45.0% |
| CTGCTGATGGTAGACGATTT+CGG | - | chr1_3:74792680-74792699 | Msa0140570:intron | 45.0% | |
| ATGGTAGACGATTTCGGAGT+GGG | - | chr1_3:74792686-74792705 | Msa0140570:intron | 45.0% | |
| !! | GGTTTGGCCTTATCATTTGC+TGG | - | chr1_3:74793193-74793212 | Msa0140570:CDS | 45.0% |
| ! | TCATTTGCTGGCAGTGATCA+AGG | - | chr1_3:74793205-74793224 | Msa0140570:CDS | 45.0% |
| AGGATGTAGTCTTCGCTTGA+GGG | + | chr1_3:74793476-74793495 | None:intergenic | 45.0% | |
| AAGGATGTAGTCTTCGCTTG+AGG | + | chr1_3:74793477-74793496 | None:intergenic | 45.0% | |
| AAAGGGTGGAGAGACCAAAT+AGG | + | chr1_3:74793512-74793531 | None:intergenic | 45.0% | |
| GAAACGAGGAAATGAAAGGG+TGG | + | chr1_3:74793526-74793545 | None:intergenic | 45.0% | |
| ATGGAAGAAGTGGGGTATAG+TGG | - | chr1_3:74793605-74793624 | Msa0140570:intron | 45.0% | |
| !! | TAATTAAAAAAAAAAAAGAA+CGG | + | chr1_3:74792024-74792043 | None:intergenic | 5.0% |
| !!! | TGTTTGGGAGGGGTTTTGGA+GGG | - | chr1_3:74789431-74789450 | Msa0140570:intron | 50.0% |
| !!! | ATGGAGGGTTTTGGAAGGGA+GGG | + | chr1_3:74789624-74789643 | None:intergenic | 50.0% |
| !!! | ACCCCCTTTTAGGGTGTGTT+TGG | + | chr1_3:74789647-74789666 | None:intergenic | 50.0% |
| AAATTGGAGGGGAGAACGTG+TGG | - | chr1_3:74790123-74790142 | Msa0140570:intron | 50.0% | |
| AATTGGAGGGGAGAACGTGT+GGG | - | chr1_3:74790124-74790143 | Msa0140570:intron | 50.0% | |
| GAGAACGTGTGGGGTAAAGT+AGG | - | chr1_3:74790134-74790153 | Msa0140570:intron | 50.0% | |
| GAACGTGTGGGGTAAAGTAG+GGG | - | chr1_3:74790136-74790155 | Msa0140570:intron | 50.0% | |
| CTGAACGTGGAGTTCATTCC+TGG | - | chr1_3:74790177-74790196 | Msa0140570:intron | 50.0% | |
| ! | TTTTCCAACCCCTCTCTCAC+TGG | - | chr1_3:74790209-74790228 | Msa0140570:intron | 50.0% |
| TATTCCAGTGAGAGAGGGGT+TGG | + | chr1_3:74790216-74790235 | None:intergenic | 50.0% | |
| GATTCCCAGGAATAGAGGAC+CGG | + | chr1_3:74790336-74790355 | None:intergenic | 50.0% | |
| ! | CTTAATTTGGCTTCCCTCCC+TGG | - | chr1_3:74791328-74791347 | Msa0140570:intron | 50.0% |
| AATGAGTGGCCATTGAGCCA+GGG | + | chr1_3:74791348-74791367 | None:intergenic | 50.0% | |
| CCAGCAGGAGATTCAATGAG+TGG | + | chr1_3:74791362-74791381 | None:intergenic | 50.0% | |
| CCACTCATTGAATCTCCTGC+TGG | - | chr1_3:74791359-74791378 | Msa0140570:intron | 50.0% | |
| TCAGTAGTTTCCCCTTCACC+AGG | + | chr1_3:74791818-74791837 | None:intergenic | 50.0% | |
| CATTGTCGCAGTGGGAATTG+AGG | - | chr1_3:74792307-74792326 | Msa0140570:intron | 50.0% | |
| GATGCAATACAGGCTTGTGG+AGG | - | chr1_3:74792649-74792668 | Msa0140570:intron | 50.0% | |
| GATGGTAGACGATTTCGGAG+TGG | - | chr1_3:74792685-74792704 | Msa0140570:intron | 50.0% | |
| TGGTAGACGATTTCGGAGTG+GGG | - | chr1_3:74792687-74792706 | Msa0140570:intron | 50.0% | |
| !! | TTTTGGGTGGGGAGGAACTT+AGG | - | chr1_3:74792811-74792830 | Msa0140570:intron | 50.0% |
| ! | GGTCTGTTTGGGAGGGGTTT+TGG | - | chr1_3:74789427-74789446 | Msa0140570:intron | 55.0% |
| !! | CTGTTTGGGAGGGGTTTTGG+AGG | - | chr1_3:74789430-74789449 | Msa0140570:intron | 55.0% |
| !!! | GTTTGGGAGGGGTTTTGGAG+GGG | - | chr1_3:74789432-74789451 | Msa0140570:intron | 55.0% |
| !!! | GGTTTTGGAGGGGAGGACTT+TGG | - | chr1_3:74789442-74789461 | Msa0140570:intron | 55.0% |
| TTTGGAGGGGAGGACTTTGG+AGG | - | chr1_3:74789445-74789464 | Msa0140570:intron | 55.0% | |
| TTGGAGGGGAGGACTTTGGA+GGG | - | chr1_3:74789446-74789465 | Msa0140570:intron | 55.0% | |
| !!! | TGGAGGGTTTTGGAAGGGAG+GGG | + | chr1_3:74789623-74789642 | None:intergenic | 55.0% |
| !!! | GATGGAGGGTTTTGGAAGGG+AGG | + | chr1_3:74789625-74789644 | None:intergenic | 55.0% |
| ATTGGAGGGGAGAACGTGTG+GGG | - | chr1_3:74790125-74790144 | Msa0140570:intron | 55.0% | |
| ! | TACACTGCTGCGGGTTGTCT+TGG | - | chr1_3:74790625-74790644 | Msa0140570:intron | 55.0% |
| CAATGAGTGGCCATTGAGCC+AGG | + | chr1_3:74791349-74791368 | None:intergenic | 55.0% | |
| GGAGGCCAAAAGACTGCTGA+TGG | - | chr1_3:74792667-74792686 | Msa0140570:intron | 55.0% | |
| GGTAGACGATTTCGGAGTGG+GGG | - | chr1_3:74792688-74792707 | Msa0140570:intron | 55.0% | |
| !!! | GGGTTTTGGAAGGGAGGGGA+GGG | + | chr1_3:74789619-74789638 | None:intergenic | 60.0% |
| !!! | AGGGTTTTGGAAGGGAGGGG+AGG | + | chr1_3:74789620-74789639 | None:intergenic | 60.0% |
| AGTGGCCATTGAGCCAGGGA+GGG | + | chr1_3:74791344-74791363 | None:intergenic | 60.0% | |
| ! | TAAGCCTGTGTGCGTTGGCC+TGG | - | chr1_3:74791797-74791816 | Msa0140570:intron | 60.0% |
| TTCACCAGGCCAACGCACAC+AGG | + | chr1_3:74791804-74791823 | None:intergenic | 60.0% | |
| ! | TGTGTGCGTTGGCCTGGTGA+AGG | - | chr1_3:74791803-74791822 | Msa0140570:intron | 60.0% |
| ! | GTGTGCGTTGGCCTGGTGAA+GGG | - | chr1_3:74791804-74791823 | Msa0140570:intron | 60.0% |
| ! | TGTGCGTTGGCCTGGTGAAG+GGG | - | chr1_3:74791805-74791824 | Msa0140570:intron | 60.0% |
| AGACGATTTCGGAGTGGGGG+TGG | - | chr1_3:74792691-74792710 | Msa0140570:intron | 60.0% | |
| !!! | TGGGAGGGGTTTTGGAGGGG+AGG | - | chr1_3:74789435-74789454 | Msa0140570:intron | 65.0% |
| GGCTTCCCTCCCTGGCTCAA+TGG | - | chr1_3:74791336-74791355 | Msa0140570:intron | 65.0% | |
| GAGTGGCCATTGAGCCAGGG+AGG | + | chr1_3:74791345-74791364 | None:intergenic | 65.0% | |
| GGAGTGGGGGTGGCATACTG+TGG | - | chr1_3:74792701-74792720 | Msa0140570:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 74788087 | 74793762 | 74788087 | ID=Msa0140570;Name=Msa0140570 |
| chr1_3 | mRNA | 74788087 | 74793762 | 74788087 | ID=Msa0140570-mRNA-1;Parent=Msa0140570;Name=Msa0140570-mRNA-1;_AED=0.25;_eAED=0.25;_QI=144|1|1|1|0.75|0.6|5|375|257 |
| chr1_3 | exon | 74788087 | 74788719 | 74788087 | ID=Msa0140570-mRNA-1:exon:26197;Parent=Msa0140570-mRNA-1 |
| chr1_3 | exon | 74789060 | 74789203 | 74789060 | ID=Msa0140570-mRNA-1:exon:26196;Parent=Msa0140570-mRNA-1 |
| chr1_3 | exon | 74791171 | 74791276 | 74791171 | ID=Msa0140570-mRNA-1:exon:26195;Parent=Msa0140570-mRNA-1 |
| chr1_3 | exon | 74793075 | 74793362 | 74793075 | ID=Msa0140570-mRNA-1:exon:26194;Parent=Msa0140570-mRNA-1 |
| chr1_3 | exon | 74793641 | 74793762 | 74793641 | ID=Msa0140570-mRNA-1:exon:26193;Parent=Msa0140570-mRNA-1 |
| chr1_3 | five_prime_UTR | 74793641 | 74793762 | 74793641 | ID=Msa0140570-mRNA-1:five_prime_utr;Parent=Msa0140570-mRNA-1 |
| chr1_3 | five_prime_UTR | 74793341 | 74793362 | 74793341 | ID=Msa0140570-mRNA-1:five_prime_utr;Parent=Msa0140570-mRNA-1 |
| chr1_3 | CDS | 74793075 | 74793340 | 74793075 | ID=Msa0140570-mRNA-1:cds;Parent=Msa0140570-mRNA-1 |
| chr1_3 | CDS | 74791171 | 74791276 | 74791171 | ID=Msa0140570-mRNA-1:cds;Parent=Msa0140570-mRNA-1 |
| chr1_3 | CDS | 74789060 | 74789203 | 74789060 | ID=Msa0140570-mRNA-1:cds;Parent=Msa0140570-mRNA-1 |
| chr1_3 | CDS | 74788462 | 74788719 | 74788462 | ID=Msa0140570-mRNA-1:cds;Parent=Msa0140570-mRNA-1 |
| chr1_3 | three_prime_UTR | 74788087 | 74788461 | 74788087 | ID=Msa0140570-mRNA-1:three_prime_utr;Parent=Msa0140570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
