AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0520070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520070 MtrunA17_Chr1g0151791 65.359 153 53 0 1 153 108 260 6.97e-70 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0520070 AT3G20430.1 51.948 154 68 3 1 152 109 258 3.26e-51 164

Find 80 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGCAAGAATTCGAATTAT+TGG 0.185828 3_4:+72458291 None:intergenic
TTCTTTCATGTGTTCCTATT+TGG 0.197768 3_4:+72463701 Msa0520070:three_prime_UTR
TGAAACACTCGTGGCAATTT+TGG 0.217790 3_4:-72463858 None:intergenic
GCCCAATTTGCAAAATGTTT+TGG 0.258923 3_4:+72458816 Msa0520070:five_prime_UTR
TGAGAAGAATCATCTTTCTT+TGG 0.263292 3_4:-72463375 None:intergenic
CTTTATGATTATATAGGATT+AGG 0.263431 3_4:+72463773 Msa0520070:three_prime_UTR
TGTTGAAGAAGGAGAGTTAG+TGG 0.307280 3_4:+72458792 Msa0520070:five_prime_UTR
ATTATCTCTTTGTAGGCCTT+TGG 0.314430 3_4:-72462951 None:intergenic
ATGCAAGAATTCGAATTATT+GGG 0.316904 3_4:+72458292 None:intergenic
TATTAATGCAGAAGCAATTC+AGG 0.317250 3_4:+72463325 Msa0520070:intron
AGATGGCTTTATGATTATAT+AGG 0.318884 3_4:+72463767 Msa0520070:three_prime_UTR
GTCTACCATCAGCAGTCTTT+TGG 0.323934 3_4:-72462878 None:intergenic
GCAATTTCTGTGTGCAAGTA+TGG 0.329455 3_4:+72459454 Msa0520070:five_prime_UTR
ATATTTAGTTGTTTAACATT+TGG 0.343026 3_4:-72463351 None:intergenic
TTTATGATTATATAGGATTA+GGG 0.351487 3_4:+72463774 Msa0520070:three_prime_UTR
AGATGATTCTTCTCAAGGTT+TGG 0.368080 3_4:+72463383 Msa0520070:CDS
TATCTGTTCATGACAGGTTA+AGG 0.381152 3_4:+72463511 Msa0520070:CDS
CTGCTGATGGTAGACGATTT+CGG 0.382090 3_4:+72462886 Msa0520070:CDS
GGTTTGGCCTTATCATTTGC+TGG 0.387229 3_4:+72463399 Msa0520070:CDS
GAAGAACAAGAGAAAGAGAA+AGG 0.401070 3_4:+72458930 Msa0520070:five_prime_UTR
GAAAAGAGCAAAAGAGTTTG+AGG 0.403168 3_4:+72462974 Msa0520070:CDS
GTGGAACATCATAAAGGTTC+AGG 0.418166 3_4:+72462926 Msa0520070:CDS
TACACTGCTGCGGGTTGTCT+TGG 0.419749 3_4:+72460831 Msa0520070:CDS
AGTGCTGAACTTGTCTCAAA+TGG 0.426040 3_4:+72463908 Msa0520070:three_prime_UTR
AAAGGGTGGAGAGACCAAAT+AGG 0.432254 3_4:-72463715 None:intergenic
AATTCGAATTATTGGGAGAC+AGG 0.433198 3_4:+72458299 Msa0520070:five_prime_UTR
TCATTTGCTGGCAGTGATCA+AGG 0.433421 3_4:+72463411 Msa0520070:CDS
ATGGAAGAAGTGGGGTATAG+TGG 0.440867 3_4:+72463811 Msa0520070:three_prime_UTR
ATGGTAGACGATTTCGGAGT+GGG 0.444653 3_4:+72462892 Msa0520070:CDS
ATGCTGATTCAGTGTTTGTA+AGG 0.449143 3_4:-72458357 None:intergenic
AGATCATCATCATAGGAAAC+AGG 0.457123 3_4:-72463537 None:intergenic
AAGAAAGATGATTCTTCTCA+AGG 0.457634 3_4:+72463378 Msa0520070:CDS
TTGCATTTCTGATGCAAGAA+AGG 0.457701 3_4:-72463451 None:intergenic
GAGAAGTATCTGCTATTCAT+TGG 0.460793 3_4:+72459476 Msa0520070:five_prime_UTR
TCCTATGATGATGATCTACT+TGG 0.470099 3_4:+72463543 Msa0520070:CDS
TATATAATCATAAAGCCATC+TGG 0.480299 3_4:-72463765 None:intergenic
AAGAGAAAGAGAAAGGGTTC+AGG 0.486855 3_4:+72458937 Msa0520070:five_prime_UTR
TCCAAGTAGATCATCATCAT+AGG 0.495710 3_4:-72463544 None:intergenic
CATACTGTGGAACATCATAA+AGG 0.500400 3_4:+72462920 Msa0520070:CDS
GACTGTTTGTCATGGAGGAA+GGG 0.504833 3_4:+72458707 Msa0520070:five_prime_UTR
AATGCAAAATCAACACGAAC+CGG 0.510093 3_4:+72463467 Msa0520070:CDS
ATCACTGCCAGCAAATGATA+AGG 0.511776 3_4:-72463406 None:intergenic
ATTCAGTGTTTGTAAGGCGG+TGG 0.511836 3_4:-72458351 None:intergenic
CACTAAACCTCTGTCTAAGA+AGG 0.512541 3_4:-72463639 None:intergenic
AATTATTGGGAGACAGGGAG+AGG 0.514271 3_4:+72458305 Msa0520070:five_prime_UTR
GAATGTATCGTTGTTATAGT+TGG 0.514326 3_4:+72463835 Msa0520070:three_prime_UTR
AGTCATGTTGCATCATTGAC+TGG 0.517971 3_4:-72463573 None:intergenic
ACTGTTTGTCATGGAGGAAG+GGG 0.519176 3_4:+72458708 Msa0520070:five_prime_UTR
AAGAACAAGAGAAAGAGAAA+GGG 0.523902 3_4:+72458931 Msa0520070:five_prime_UTR
AGGATGTAGTCTTCGCTTGA+GGG 0.524918 3_4:-72463679 None:intergenic
TAAAGAAACGAGGAAATGAA+AGG 0.525448 3_4:-72463733 None:intergenic
TTTCTCTTTCAGATGACGAC+AGG 0.526223 3_4:-72460793 None:intergenic
AGGTGTTTGACTGTTTGTCA+TGG 0.535671 3_4:+72458699 Msa0520070:five_prime_UTR
TGACTGTTTGTCATGGAGGA+AGG 0.536588 3_4:+72458706 Msa0520070:five_prime_UTR
GAACTTGTCTCAAATGGATA+CGG 0.539039 3_4:+72463914 Msa0520070:three_prime_UTR
GACATGATTGATGTTGAAGA+AGG 0.542173 3_4:+72458781 Msa0520070:five_prime_UTR
AAGGATGTAGTCTTCGCTTG+AGG 0.544346 3_4:-72463680 None:intergenic
TCTTTATTTACCTTGCCAGA+TGG 0.557795 3_4:+72463750 Msa0520070:three_prime_UTR
AAAGAAACGAGGAAATGAAA+GGG 0.559782 3_4:-72463732 None:intergenic
ACCTAGTCACAAATATAGAC+AGG 0.564181 3_4:+72458960 Msa0520070:five_prime_UTR
ACCTGTCTATATTTGTGACT+AGG 0.569600 3_4:-72458961 None:intergenic
AAATAGGAACACATGAAAGA+AGG 0.572537 3_4:-72463699 None:intergenic
AATCATAAAGCCATCTGGCA+AGG 0.592575 3_4:-72463760 None:intergenic
GTTGATGCAATACAGGCTTG+TGG 0.597539 3_4:+72462852 Msa0520070:CDS
ATTCGAATTATTGGGAGACA+GGG 0.606740 3_4:+72458300 Msa0520070:five_prime_UTR
ATTAAGTGATATCATCAAAG+AGG 0.607067 3_4:+72460863 Msa0520070:CDS
TGGTAGACGATTTCGGAGTG+GGG 0.613310 3_4:+72462893 Msa0520070:CDS
CATAAAGGTTCAGGAACCAA+AGG 0.616588 3_4:+72462935 Msa0520070:CDS
GGTAGACGATTTCGGAGTGG+GGG 0.617630 3_4:+72462894 Msa0520070:CDS
TATATGGTATACACTGCTGC+GGG 0.621075 3_4:+72460822 Msa0520070:exon
GAAACGAGGAAATGAAAGGG+TGG 0.627679 3_4:-72463729 None:intergenic
CTGATTCAGTGTTTGTAAGG+CGG 0.628840 3_4:-72458354 None:intergenic
ATATATGGTATACACTGCTG+CGG 0.631527 3_4:+72460821 Msa0520070:exon
AAAATCTAATGAAACACTCG+TGG 0.643803 3_4:-72463867 None:intergenic
GGAGGCCAAAAGACTGCTGA+TGG 0.663490 3_4:+72462873 Msa0520070:CDS
GATGGTAGACGATTTCGGAG+TGG 0.663553 3_4:+72462891 Msa0520070:CDS
GATGCAATACAGGCTTGTGG+AGG 0.676395 3_4:+72462855 Msa0520070:CDS
TGTTTGACTGTTTGTCATGG+AGG 0.687318 3_4:+72458702 Msa0520070:five_prime_UTR
TATAGTGAGAATTCAAAGTG+CGG 0.703531 3_4:+72458883 Msa0520070:five_prime_UTR
GCAAGGTAAATAAAGAAACG+AGG 0.739293 3_4:-72463743 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAACAAAAAAATGTAAA+TGG - chr3_4:72458567-72458586 None:intergenic 10.0%
!!! AATTTTTGTAAAAAAATGTT+TGG + chr3_4:72459948-72459967 Msa0520070:intron 10.0%
!! ATGAAAATAAAAATAAAAAC+AGG - chr3_4:72462767-72462786 None:intergenic 10.0%
!!! TGAATAATCTTTATATTTTT+GGG + chr3_4:72463001-72463020 Msa0520070:intron 10.0%
!!! TTATCGGAATATTTTATTTT+AGG + chr3_4:72459012-72459031 Msa0520070:intron 15.0%
!!! TAAACTAAAAATGACATTTT+TGG + chr3_4:72459172-72459191 Msa0520070:intron 15.0%
!! AAATCCATAATAAACATTAT+GGG + chr3_4:72459227-72459246 Msa0520070:intron 15.0%
!! AGTCTAATATTAAGTATTTA+AGG + chr3_4:72459612-72459631 Msa0520070:intron 15.0%
!! GTCTAATATTAAGTATTTAA+GGG + chr3_4:72459613-72459632 Msa0520070:intron 15.0%
!!! TAAAAAACATTTTATAGTGT+CGG + chr3_4:72459778-72459797 Msa0520070:intron 15.0%
!!! ATTTTTTTACAAAAATTCCT+AGG - chr3_4:72459945-72459964 None:intergenic 15.0%
!!! ATAATTTTGACATTTATTTC+CGG - chr3_4:72460054-72460073 None:intergenic 15.0%
!!! TATGAAATATATATGGTTTT+TGG - chr3_4:72460104-72460123 None:intergenic 15.0%
!! CAGAAAATATGAAATATATA+TGG - chr3_4:72460111-72460130 None:intergenic 15.0%
!! TCAAATGACTTAAATAATAT+TGG + chr3_4:72461028-72461047 Msa0520070:intron 15.0%
!! GATTAAATTAAGTAAAACAA+AGG - chr3_4:72461462-72461481 None:intergenic 15.0%
!! TTTCTGAATATTTCTTAATT+TGG + chr3_4:72461521-72461540 Msa0520070:intron 15.0%
!!! GTGAATAATCTTTATATTTT+TGG + chr3_4:72463000-72463019 Msa0520070:intron 15.0%
!! ATATTTAGTTGTTTAACATT+TGG - chr3_4:72463354-72463373 None:intergenic 15.0%
!! TTTATGATTATATAGGATTA+GGG + chr3_4:72463774-72463793 Msa0520070:three_prime_UTR 15.0%
!! AAACAATACGCAATAAATAA+AGG - chr3_4:72458456-72458475 None:intergenic 20.0%
!!! TAAAAATGACATTTTTGGAT+TGG + chr3_4:72459177-72459196 Msa0520070:intron 20.0%
!! GAAATCCATAATAAACATTA+TGG + chr3_4:72459226-72459245 Msa0520070:intron 20.0%
!! AATCCATAATAAACATTATG+GGG + chr3_4:72459228-72459247 Msa0520070:intron 20.0%
!!! ATTTTAGCCTTTTTTATGTT+TGG + chr3_4:72459307-72459326 Msa0520070:intron 20.0%
!! AAACAAACCAAACATAAAAA+AGG - chr3_4:72459317-72459336 None:intergenic 20.0%
!!! CTTAGATTTTTTTTATTGTG+CGG + chr3_4:72459351-72459370 Msa0520070:intron 20.0%
!!! TTAGATTTTTTTTATTGTGC+GGG + chr3_4:72459352-72459371 Msa0520070:intron 20.0%
!!! TTAGTCTTATGCTTTTTTAT+TGG + chr3_4:72459517-72459536 Msa0520070:intron 20.0%
!!! TAATTTTGACATTTATTTCC+GGG - chr3_4:72460053-72460072 None:intergenic 20.0%
!!! CTATGCATTGTTTTTTTTTT+TGG + chr3_4:72460232-72460251 Msa0520070:intron 20.0%
!!! TCTACTTAAAGATGTTATTT+CGG + chr3_4:72461077-72461096 Msa0520070:intron 20.0%
!! ATGATTTGAACAAATGTATA+TGG - chr3_4:72461377-72461396 None:intergenic 20.0%
!!! TCTTTTATGTAAAGCAAATA+TGG + chr3_4:72462119-72462138 Msa0520070:intron 20.0%
!! GCAAATAAATAAAGAAACTT+TGG + chr3_4:72462267-72462286 Msa0520070:intron 20.0%
!!! TTTGCATATAGTGTTTATTT+TGG + chr3_4:72462407-72462426 Msa0520070:intron 20.0%
!!! ATATAGTGTTTATTTTGGTT+GGG + chr3_4:72462412-72462431 Msa0520070:intron 20.0%
!! AAAAATAAGTAAAGTCACTA+CGG - chr3_4:72462556-72462575 None:intergenic 20.0%
!! AATTTACAATGTATCAACTT+AGG - chr3_4:72462814-72462833 None:intergenic 20.0%
!!! ATAATCTTTATATTTTTGGG+TGG + chr3_4:72463004-72463023 Msa0520070:intron 20.0%
!!! TAATCTTTATATTTTTGGGT+GGG + chr3_4:72463005-72463024 Msa0520070:intron 20.0%
!! TTTGTAGTAACTATTAAGTA+GGG + chr3_4:72463131-72463150 Msa0520070:intron 20.0%
!! TATCCAAATAAATCAAGTAA+AGG + chr3_4:72463171-72463190 Msa0520070:intron 20.0%
!!! AAATTTTCTTTAGAAGTAAC+CGG - chr3_4:72463489-72463508 None:intergenic 20.0%
!! CTTTATGATTATATAGGATT+AGG + chr3_4:72463773-72463792 Msa0520070:three_prime_UTR 20.0%
! TTCAAATTGCACTTACAATT+AGG + chr3_4:72458494-72458513 Msa0520070:intron 25.0%
! TCAAATTGCACTTACAATTA+GGG + chr3_4:72458495-72458514 Msa0520070:intron 25.0%
!! TCCAAAACATTTTGCAAATT+GGG - chr3_4:72458820-72458839 None:intergenic 25.0%
!! TTCCAAAACATTTTGCAAAT+TGG - chr3_4:72458821-72458840 None:intergenic 25.0%
!!! ATTCATTGAGTTTTGGTTAT+CGG + chr3_4:72458996-72459015 Msa0520070:intron 25.0%
!! CAACTTAAGTTTCCAAATTT+TGG - chr3_4:72459117-72459136 None:intergenic 25.0%
! ATCCATAATAAACATTATGG+GGG + chr3_4:72459229-72459248 Msa0520070:intron 25.0%
! AGTTTATTAAGCCATCAATA+AGG - chr3_4:72459557-72459576 None:intergenic 25.0%
! AGGATACAAAAATAATTCCT+TGG + chr3_4:72459882-72459901 Msa0520070:intron 25.0%
! TGGTTTAAAAAGTAAAATCC+CGG + chr3_4:72460032-72460051 Msa0520070:intron 25.0%
! TGGTCTCTTGAATTTAAAAA+GGG - chr3_4:72460084-72460103 None:intergenic 25.0%
! TTGGTCTCTTGAATTTAAAA+AGG - chr3_4:72460085-72460104 None:intergenic 25.0%
!! TATTTTCTGCTAATAAAGCA+AGG + chr3_4:72460122-72460141 Msa0520070:intron 25.0%
! AATACTCATGTCAAACTTAA+TGG - chr3_4:72460170-72460189 None:intergenic 25.0%
!!! TCCATTTTTTTATAGAAGGA+AGG + chr3_4:72460301-72460320 Msa0520070:intron 25.0%
! TCCTTCCTTCTATAAAAAAA+TGG - chr3_4:72460305-72460324 None:intergenic 25.0%
! TAGAAGGAAGGAAAAAAAAT+TGG + chr3_4:72460313-72460332 Msa0520070:intron 25.0%
! GAAAGAGAAAAAGTCATATA+TGG + chr3_4:72460806-72460825 Msa0520070:exon 25.0%
! ATTAAGTGATATCATCAAAG+AGG + chr3_4:72460863-72460882 Msa0520070:CDS 25.0%
!! ATAATATTGGTGATACTGTT+TGG + chr3_4:72461041-72461060 Msa0520070:intron 25.0%
! ATGTAAGAAACAGAGAAAAT+GGG - chr3_4:72461241-72461260 None:intergenic 25.0%
! AATGTAAGAAACAGAGAAAA+TGG - chr3_4:72461242-72461261 None:intergenic 25.0%
! AAGTTTCCATGTATTTAGAA+GGG - chr3_4:72461287-72461306 None:intergenic 25.0%
! AAAGTTTCCATGTATTTAGA+AGG - chr3_4:72461288-72461307 None:intergenic 25.0%
! ATTAAGTAAAACAAAGGTTG+TGG - chr3_4:72461456-72461475 None:intergenic 25.0%
! TTATTTCCCATCTCTTTAAT+AGG + chr3_4:72461632-72461651 Msa0520070:intron 25.0%
! AGTTGAGGTTATATACTATT+TGG + chr3_4:72461700-72461719 Msa0520070:intron 25.0%
! AATTAAAATCTGCAAGGTTA+GGG - chr3_4:72461808-72461827 None:intergenic 25.0%
! TCATTATTTACAAACTGTGA+AGG + chr3_4:72461891-72461910 Msa0520070:intron 25.0%
!! GATTTTCCTTTAAATATGCT+AGG + chr3_4:72462299-72462318 Msa0520070:intron 25.0%
! AAAATGCCTAGCATATTTAA+AGG - chr3_4:72462308-72462327 None:intergenic 25.0%
!! ATATGCTAGGCATTTTTAAA+AGG + chr3_4:72462312-72462331 Msa0520070:intron 25.0%
! AACCCAATTAAACTAAATAC+TGG - chr3_4:72462338-72462357 None:intergenic 25.0%
!!! CATATAGTGTTTATTTTGGT+TGG + chr3_4:72462411-72462430 Msa0520070:intron 25.0%
! TAGTTTAGATTCAGAAATCT+TGG - chr3_4:72462492-72462511 None:intergenic 25.0%
!!! GTAGTGACTTTACTTATTTT+TGG + chr3_4:72462555-72462574 Msa0520070:intron 25.0%
!!! AGTAGAGCTCATATTTTTAT+TGG - chr3_4:72462590-72462609 None:intergenic 25.0%
! TGTACATAAAATATAGATGG+TGG - chr3_4:72462707-72462726 None:intergenic 25.0%
! ACGTGTACATAAAATATAGA+TGG - chr3_4:72462710-72462729 None:intergenic 25.0%
!! TCTTTTCATTATCTCTTTGT+AGG - chr3_4:72462961-72462980 None:intergenic 25.0%
!!! AATCTTTATATTTTTGGGTG+GGG + chr3_4:72463006-72463025 Msa0520070:intron 25.0%
! ATAGTTACTACAAACATACA+TGG - chr3_4:72463125-72463144 None:intergenic 25.0%
! GTTTGTAGTAACTATTAAGT+AGG + chr3_4:72463130-72463149 Msa0520070:intron 25.0%
! TTGTAGTAACTATTAAGTAG+GGG + chr3_4:72463132-72463151 Msa0520070:intron 25.0%
! AAGCCTTTACTTGATTTATT+TGG - chr3_4:72463177-72463196 None:intergenic 25.0%
!! ATTTTATATCTGTTCATGAC+AGG + chr3_4:72463505-72463524 Msa0520070:CDS 25.0%
! TATATAATCATAAAGCCATC+TGG - chr3_4:72463768-72463787 None:intergenic 25.0%
!!! AGATGGCTTTATGATTATAT+AGG + chr3_4:72463767-72463786 Msa0520070:three_prime_UTR 25.0%
! ATGAAAAAAATGGAAGAAGT+GGG + chr3_4:72463802-72463821 Msa0520070:three_prime_UTR 25.0%
!! TTAGATTTTGCTTCAAATGA+TGG + chr3_4:72463881-72463900 Msa0520070:three_prime_UTR 25.0%
! GAAAATACAGTGATAGTGAT+AGG - chr3_4:72458434-72458453 None:intergenic 30.0%
ACTGTCAATGAATACCAATT+TGG + chr3_4:72458657-72458676 Msa0520070:intron 30.0%
TATAGTGAGAATTCAAAGTG+CGG + chr3_4:72458883-72458902 Msa0520070:five_prime_UTR 30.0%
AAGAACAAGAGAAAGAGAAA+GGG + chr3_4:72458931-72458950 Msa0520070:five_prime_UTR 30.0%
! ATCCTACATTCATTGAGTTT+TGG + chr3_4:72458989-72459008 Msa0520070:intron 30.0%
AACCAAAACTCAATGAATGT+AGG - chr3_4:72458994-72459013 None:intergenic 30.0%
!!! TTTTAGGATGAACTATGCTT+TGG + chr3_4:72459028-72459047 Msa0520070:intron 30.0%
! TTTTACCCATCTCCAAAATT+TGG + chr3_4:72459102-72459121 Msa0520070:intron 30.0%
!! AGTTTCCAAATTTTGGAGAT+GGG - chr3_4:72459110-72459129 None:intergenic 30.0%
!! AAGTTTCCAAATTTTGGAGA+TGG - chr3_4:72459111-72459130 None:intergenic 30.0%
CTAGAGTATAGTAATTTAGC+TGG + chr3_4:72459145-72459164 Msa0520070:intron 30.0%
!! ATTTTTGGATTGGATGATGA+TGG + chr3_4:72459187-72459206 Msa0520070:intron 30.0%
!!! ATTTTTTTTATTGTGCGGGA+TGG + chr3_4:72459356-72459375 Msa0520070:intron 30.0%
! AAAAAGCATAAGACTAAGCT+TGG - chr3_4:72459514-72459533 None:intergenic 30.0%
!!! TCAATAAGGTTTTTAAGGCT+AGG - chr3_4:72459543-72459562 None:intergenic 30.0%
AGCCTTAAAAACCTTATTGA+TGG + chr3_4:72459543-72459562 Msa0520070:intron 30.0%
! AGCCATCAATAAGGTTTTTA+AGG - chr3_4:72459548-72459567 None:intergenic 30.0%
TAAGTATTTAAGGGTCTGTT+TGG + chr3_4:72459622-72459641 Msa0520070:intron 30.0%
AAGTATTTAAGGGTCTGTTT+GGG + chr3_4:72459623-72459642 Msa0520070:intron 30.0%
TAATTCCCATCATATATTCC+CGG - chr3_4:72459918-72459937 None:intergenic 30.0%
! ATGATGGGAATTATATTCCT+AGG + chr3_4:72459925-72459944 Msa0520070:intron 30.0%
TGGTTAACAATTTGAATTCC+TGG + chr3_4:72459968-72459987 Msa0520070:intron 30.0%
GGTTAACAATTTGAATTCCT+GGG + chr3_4:72459969-72459988 Msa0520070:intron 30.0%
AATTTACAAAAGAAGTTCCC+AGG - chr3_4:72459989-72460008 None:intergenic 30.0%
TCTTGAGAATGCTAAAAACA+TGG + chr3_4:72460008-72460027 Msa0520070:intron 30.0%
!!! CGGTTCCATTTTTTTATAGA+AGG + chr3_4:72460297-72460316 Msa0520070:intron 30.0%
AAGGAAGGAAAAAAAATTGG+AGG + chr3_4:72460316-72460335 Msa0520070:intron 30.0%
AGGAAGGAAAAAAAATTGGA+GGG + chr3_4:72460317-72460336 Msa0520070:intron 30.0%
!!! TTTTTTATTCCAGTGAGAGA+GGG - chr3_4:72460427-72460446 None:intergenic 30.0%
!!! ATTTTTTATTCCAGTGAGAG+AGG - chr3_4:72460428-72460447 None:intergenic 30.0%
TCTCTCACTGGAATAAAAAA+TGG + chr3_4:72460427-72460446 Msa0520070:intron 30.0%
AATAAAAAATGGCAGATCGT+GGG + chr3_4:72460438-72460457 Msa0520070:intron 30.0%
AGGAAACTTAAAATTTGCCT+GGG - chr3_4:72460492-72460511 None:intergenic 30.0%
AAGGAAACTTAAAATTTGCC+TGG - chr3_4:72460493-72460512 None:intergenic 30.0%
GAAAAACATATTCCAGTGTT+TGG - chr3_4:72460520-72460539 None:intergenic 30.0%
! AACACTGGAATATGTTTTTC+CGG + chr3_4:72460520-72460539 Msa0520070:intron 30.0%
AAGAATGCAAAACTCTTATG+GGG - chr3_4:72460589-72460608 None:intergenic 30.0%
GAAGAATGCAAAACTCTTAT+GGG - chr3_4:72460590-72460609 None:intergenic 30.0%
AGAAGAATGCAAAACTCTTA+TGG - chr3_4:72460591-72460610 None:intergenic 30.0%
CTAAATTTGAGTGCATCATA+GGG - chr3_4:72460897-72460916 None:intergenic 30.0%
ACTAAATTTGAGTGCATCAT+AGG - chr3_4:72460898-72460917 None:intergenic 30.0%
TCTTTAAGTAGACAGATACT+GGG - chr3_4:72461069-72461088 None:intergenic 30.0%
ATCTTTAAGTAGACAGATAC+TGG - chr3_4:72461070-72461089 None:intergenic 30.0%
TGGATGAAAGAAAAACAAGA+CGG - chr3_4:72461123-72461142 None:intergenic 30.0%
GTAAGAAATTAAGTGATGAG+AGG - chr3_4:72461195-72461214 None:intergenic 30.0%
! TTCAAATCATCTTCGTTTTC+TGG + chr3_4:72461387-72461406 Msa0520070:intron 30.0%
GAGGTTATATACTATTTGGA+CGG + chr3_4:72461704-72461723 Msa0520070:intron 30.0%
AGAAATTAAAAATGGCTGCA+TGG - chr3_4:72461768-72461787 None:intergenic 30.0%
GAATTAAAATCTGCAAGGTT+AGG - chr3_4:72461809-72461828 None:intergenic 30.0%
AGGCTTAGAAAATCGATTAT+GGG - chr3_4:72461990-72462009 None:intergenic 30.0%
! AGGCCAGTATTTAGTTTAAT+TGG + chr3_4:72462332-72462351 Msa0520070:intron 30.0%
! GGCCAGTATTTAGTTTAATT+GGG + chr3_4:72462333-72462352 Msa0520070:intron 30.0%
AAAGGAAAATGGAAGATTCT+AGG - chr3_4:72462466-72462485 None:intergenic 30.0%
!! AATTGAGGGTATCATATCAT+TGG + chr3_4:72462528-72462547 Msa0520070:intron 30.0%
ATACATTGTAAATTTGCACG+CGG + chr3_4:72462820-72462839 Msa0520070:intron 30.0%
TATTAATGCAGAAGCAATTC+AGG + chr3_4:72463325-72463344 Msa0520070:intron 30.0%
TGAGAAGAATCATCTTTCTT+TGG - chr3_4:72463378-72463397 None:intergenic 30.0%
AAGAAAGATGATTCTTCTCA+AGG + chr3_4:72463378-72463397 Msa0520070:CDS 30.0%
AAATAGGAACACATGAAAGA+AGG - chr3_4:72463702-72463721 None:intergenic 30.0%
TTCTTTCATGTGTTCCTATT+TGG + chr3_4:72463701-72463720 Msa0520070:three_prime_UTR 30.0%
AAAGAAACGAGGAAATGAAA+GGG - chr3_4:72463735-72463754 None:intergenic 30.0%
TAAAGAAACGAGGAAATGAA+AGG - chr3_4:72463736-72463755 None:intergenic 30.0%
TAGGGCAAACATGAAAAAAA+TGG + chr3_4:72463792-72463811 Msa0520070:three_prime_UTR 30.0%
CATGAAAAAAATGGAAGAAG+TGG + chr3_4:72463801-72463820 Msa0520070:three_prime_UTR 30.0%
TGAAAAAAATGGAAGAAGTG+GGG + chr3_4:72463803-72463822 Msa0520070:three_prime_UTR 30.0%
GAATGTATCGTTGTTATAGT+TGG + chr3_4:72463835-72463854 Msa0520070:three_prime_UTR 30.0%
AAAATCTAATGAAACACTCG+TGG - chr3_4:72463870-72463889 None:intergenic 30.0%
AATTCGAATTATTGGGAGAC+AGG + chr3_4:72458299-72458318 Msa0520070:five_prime_UTR 35.0%
ATTCGAATTATTGGGAGACA+GGG + chr3_4:72458300-72458319 Msa0520070:five_prime_UTR 35.0%
!! ATGCTGATTCAGTGTTTGTA+AGG - chr3_4:72458360-72458379 None:intergenic 35.0%
! TCTTTTCTCAAGCTCTTCTA+AGG + chr3_4:72458396-72458415 Msa0520070:five_prime_UTR 35.0%
! CAACGTGCATTGATAAAACT+CGG + chr3_4:72458521-72458540 Msa0520070:intron 35.0%
GACATGATTGATGTTGAAGA+AGG + chr3_4:72458781-72458800 Msa0520070:five_prime_UTR 35.0%
! GCCCAATTTGCAAAATGTTT+TGG + chr3_4:72458816-72458835 Msa0520070:five_prime_UTR 35.0%
GAAGAACAAGAGAAAGAGAA+AGG + chr3_4:72458930-72458949 Msa0520070:five_prime_UTR 35.0%
ACCTAGTCACAAATATAGAC+AGG + chr3_4:72458960-72458979 Msa0520070:five_prime_UTR 35.0%
ACCTGTCTATATTTGTGACT+AGG - chr3_4:72458964-72458983 None:intergenic 35.0%
TCTACAGTACACACCTTAAA+GGG - chr3_4:72459054-72459073 None:intergenic 35.0%
ATCTACAGTACACACCTTAA+AGG - chr3_4:72459055-72459074 None:intergenic 35.0%
!! TTGGATGATGATGGAGAATT+TGG + chr3_4:72459196-72459215 Msa0520070:intron 35.0%
!! TGGATGATGATGGAGAATTT+GGG + chr3_4:72459197-72459216 Msa0520070:intron 35.0%
TGCCCCCATAATGTTTATTA+TGG - chr3_4:72459234-72459253 None:intergenic 35.0%
! GGCATTTGTTTGAAGTTTGA+GGG + chr3_4:72459250-72459269 Msa0520070:intron 35.0%
!! GAGAAGTATCTGCTATTCAT+TGG + chr3_4:72459476-72459495 Msa0520070:five_prime_UTR 35.0%
GACTGAATTCCACATTCTAT+TGG - chr3_4:72459596-72459615 None:intergenic 35.0%
TTAAAACAAACACCCCCTTA+GGG - chr3_4:72459863-72459882 None:intergenic 35.0%
ATTCCTTGGAATAACTTTCC+CGG + chr3_4:72459896-72459915 Msa0520070:intron 35.0%
AATTCCCATCATATATTCCC+GGG - chr3_4:72459917-72459936 None:intergenic 35.0%
GAGAATGCTAAAAACATGGT+TGG + chr3_4:72460012-72460031 Msa0520070:intron 35.0%
AATCAGCATTCATATGCAAG+CGG + chr3_4:72460277-72460296 Msa0520070:intron 35.0%
GGAAGGAAAAAAAATTGGAG+GGG + chr3_4:72460318-72460337 Msa0520070:intron 35.0%
! TTTTTATTCCAGTGAGAGAG+GGG - chr3_4:72460426-72460445 None:intergenic 35.0%
GAATAAAAAATGGCAGATCG+TGG + chr3_4:72460437-72460456 Msa0520070:intron 35.0%
TATTCCAGTGTTTGGTAAGA+AGG - chr3_4:72460512-72460531 None:intergenic 35.0%
TTTGTTTCCGAGACATGAAA+TGG - chr3_4:72460564-72460583 None:intergenic 35.0%
TGAATGTGAGCATAAAGTCA+CGG + chr3_4:72460669-72460688 Msa0520070:intron 35.0%
ATTTGATACAGGGACAAACA+AGG - chr3_4:72460695-72460714 None:intergenic 35.0%
ATATATGGTATACACTGCTG+CGG + chr3_4:72460821-72460840 Msa0520070:exon 35.0%
TGTGAAATACCATTGTCACT+TGG + chr3_4:72460963-72460982 Msa0520070:intron 35.0%
! CATTTGAAGCAGTATTGCTT+AGG - chr3_4:72461015-72461034 None:intergenic 35.0%
!! TAAAGATGTTATTTCGGTGC+AGG + chr3_4:72461083-72461102 Msa0520070:intron 35.0%
TGAAAGAAAAACAAGACGGT+TGG - chr3_4:72461119-72461138 None:intergenic 35.0%
TTTCATCCAAAGCTGTTTGA+AGG + chr3_4:72461134-72461153 Msa0520070:intron 35.0%
AAGAAACAGAGAAAATGGGT+GGG - chr3_4:72461237-72461256 None:intergenic 35.0%
TAAGAAACAGAGAAAATGGG+TGG - chr3_4:72461238-72461257 None:intergenic 35.0%
ATCCTTCCCTTCTAAATACA+TGG + chr3_4:72461278-72461297 Msa0520070:intron 35.0%
TTCCATGTATTTAGAAGGGA+AGG - chr3_4:72461283-72461302 None:intergenic 35.0%
TTGACGGTATAACTGAGATA+TGG + chr3_4:72461342-72461361 Msa0520070:intron 35.0%
! CAAATTTTGTCCAGTTCCAA+TGG + chr3_4:72461486-72461505 Msa0520070:intron 35.0%
GAAAGTTGTCATAAGACCAT+TGG - chr3_4:72461505-72461524 None:intergenic 35.0%
CACAGTCCTATTAAAGAGAT+GGG - chr3_4:72461641-72461660 None:intergenic 35.0%
TCACAGTCCTATTAAAGAGA+TGG - chr3_4:72461642-72461661 None:intergenic 35.0%
ATAGGACTGTGACTATGATT+TGG + chr3_4:72461650-72461669 Msa0520070:intron 35.0%
ACTCTCACCTTTCCTTTAAA+AGG - chr3_4:72461683-72461702 None:intergenic 35.0%
GATAAGCATAACCAGATCAA+AGG - chr3_4:72461731-72461750 None:intergenic 35.0%
CACGCGTCAGAAATTAAAAA+TGG - chr3_4:72461776-72461795 None:intergenic 35.0%
! GTCTGGAATTAAAATCTGCA+AGG - chr3_4:72461814-72461833 None:intergenic 35.0%
GAAGTCACTATGTATGAACA+TGG - chr3_4:72461952-72461971 None:intergenic 35.0%
GCTTAGAAAATCGATTATGG+GGG - chr3_4:72461988-72462007 None:intergenic 35.0%
GGCTTAGAAAATCGATTATG+GGG - chr3_4:72461989-72462008 None:intergenic 35.0%
CAGGCTTAGAAAATCGATTA+TGG - chr3_4:72461991-72462010 None:intergenic 35.0%
! AATTTCAGCTCTGACATTGT+TGG - chr3_4:72462094-72462113 None:intergenic 35.0%
TTTACCGTCAAACCTAAATG+TGG + chr3_4:72462356-72462375 Msa0520070:intron 35.0%
TTACCGTCAAACCTAAATGT+GGG + chr3_4:72462357-72462376 Msa0520070:intron 35.0%
! TATCCCACATTTAGGTTTGA+CGG - chr3_4:72462363-72462382 None:intergenic 35.0%
AATCTTGGCACAAAGGAAAA+TGG - chr3_4:72462477-72462496 None:intergenic 35.0%
ATTCAGAAATCTTGGCACAA+AGG - chr3_4:72462484-72462503 None:intergenic 35.0%
!!! GTTTTAGGTTGATGCAATAC+AGG + chr3_4:72462845-72462864 Msa0520070:intron 35.0%
CATACTGTGGAACATCATAA+AGG + chr3_4:72462920-72462939 Msa0520070:CDS 35.0%
ATTATCTCTTTGTAGGCCTT+TGG - chr3_4:72462954-72462973 None:intergenic 35.0%
GAAAAGAGCAAAAGAGTTTG+AGG + chr3_4:72462974-72462993 Msa0520070:CDS 35.0%
!! TGGTTGGTGACAACTAAATT+CGG + chr3_4:72463064-72463083 Msa0520070:intron 35.0%
TTACTACAAACATACATGGC+TGG - chr3_4:72463121-72463140 None:intergenic 35.0%
AGATGATTCTTCTCAAGGTT+TGG + chr3_4:72463383-72463402 Msa0520070:CDS 35.0%
TTGCATTTCTGATGCAAGAA+AGG - chr3_4:72463454-72463473 None:intergenic 35.0%
AATGCAAAATCAACACGAAC+CGG + chr3_4:72463467-72463486 Msa0520070:CDS 35.0%
TATCTGTTCATGACAGGTTA+AGG + chr3_4:72463511-72463530 Msa0520070:CDS 35.0%
AGATCATCATCATAGGAAAC+AGG - chr3_4:72463540-72463559 None:intergenic 35.0%
! TCCTATGATGATGATCTACT+TGG + chr3_4:72463543-72463562 Msa0520070:CDS 35.0%
TCCAAGTAGATCATCATCAT+AGG - chr3_4:72463547-72463566 None:intergenic 35.0%
! TTTTTCTCCTTCTTAGACAG+AGG + chr3_4:72463632-72463651 Msa0520070:three_prime_UTR 35.0%
GCAAGGTAAATAAAGAAACG+AGG - chr3_4:72463746-72463765 None:intergenic 35.0%
! TCTTTATTTACCTTGCCAGA+TGG + chr3_4:72463750-72463769 Msa0520070:three_prime_UTR 35.0%
GAACTTGTCTCAAATGGATA+CGG + chr3_4:72463914-72463933 Msa0520070:three_prime_UTR 35.0%
CTGATTCAGTGTTTGTAAGG+CGG - chr3_4:72458357-72458376 None:intergenic 40.0%
GCATCAAGGGAAATCCAAAT+TGG - chr3_4:72458674-72458693 None:intergenic 40.0%
ATTTGGATTTCCCTTGATGC+AGG + chr3_4:72458674-72458693 Msa0520070:intron 40.0%
AAACACCTAACCTGCATCAA+GGG - chr3_4:72458687-72458706 None:intergenic 40.0%
AGGTGTTTGACTGTTTGTCA+TGG + chr3_4:72458699-72458718 Msa0520070:five_prime_UTR 40.0%
TGTTTGACTGTTTGTCATGG+AGG + chr3_4:72458702-72458721 Msa0520070:five_prime_UTR 40.0%
TGTTGAAGAAGGAGAGTTAG+TGG + chr3_4:72458792-72458811 Msa0520070:five_prime_UTR 40.0%
!!! GTTTTGGAACAAAGTAGTGC+TGG + chr3_4:72458832-72458851 Msa0520070:five_prime_UTR 40.0%
AAGAGAAAGAGAAAGGGTTC+AGG + chr3_4:72458937-72458956 Msa0520070:five_prime_UTR 40.0%
AACTATGCTTTGGCCCTTTA+AGG + chr3_4:72459038-72459057 Msa0520070:intron 40.0%
!! GGATGATGATGGAGAATTTG+GGG + chr3_4:72459198-72459217 Msa0520070:intron 40.0%
!! GATGATGATGGAGAATTTGG+GGG + chr3_4:72459199-72459218 Msa0520070:intron 40.0%
! GGGCATTTGTTTGAAGTTTG+AGG + chr3_4:72459249-72459268 Msa0520070:intron 40.0%
GCAATTTCTGTGTGCAAGTA+TGG + chr3_4:72459454-72459473 Msa0520070:five_prime_UTR 40.0%
ATTCTATTGGATCACAGAGG+TGG - chr3_4:72459583-72459602 None:intergenic 40.0%
CACATTCTATTGGATCACAG+AGG - chr3_4:72459586-72459605 None:intergenic 40.0%
CTCTGTGATCCAATAGAATG+TGG + chr3_4:72459584-72459603 Msa0520070:intron 40.0%
TATTTAAGGGTCTGTTTGGG+AGG + chr3_4:72459626-72459645 Msa0520070:intron 40.0%
ATTTAAGGGTCTGTTTGGGA+GGG + chr3_4:72459627-72459646 Msa0520070:intron 40.0%
CTTAAAACAAACACCCCCTT+AGG - chr3_4:72459864-72459883 None:intergenic 40.0%
!!! CTAAGGGGGTGTTTGTTTTA+AGG + chr3_4:72459862-72459881 Msa0520070:intron 40.0%
TTCCTTGGAATAACTTTCCC+GGG + chr3_4:72459897-72459916 Msa0520070:intron 40.0%
ACTTTCCCGGGAATATATGA+TGG + chr3_4:72459909-72459928 Msa0520070:intron 40.0%
CTTTCCCGGGAATATATGAT+GGG + chr3_4:72459910-72459929 Msa0520070:intron 40.0%
CACCAGAAACAACATGCTAA+TGG + chr3_4:72460204-72460223 Msa0520070:intron 40.0%
!! TGCCATTAGCATGTTGTTTC+TGG - chr3_4:72460209-72460228 None:intergenic 40.0%
GTTGGAAAATCTCTATTCCC+AGG - chr3_4:72460404-72460423 None:intergenic 40.0%
TCGTGGGTCAAATAAATTCC+TGG + chr3_4:72460454-72460473 Msa0520070:intron 40.0%
CGTGGGTCAAATAAATTCCT+GGG + chr3_4:72460455-72460474 Msa0520070:intron 40.0%
CCTGGGAATAAAAAATACCC+AGG - chr3_4:72460475-72460494 None:intergenic 40.0%
!!! CCTGGGTATTTTTTATTCCC+AGG + chr3_4:72460472-72460491 Msa0520070:intron 40.0%
GTTTCCTTCTTACCAAACAC+TGG + chr3_4:72460505-72460524 Msa0520070:intron 40.0%
! AAATGGATTCCCAGGAATAG+AGG - chr3_4:72460547-72460566 None:intergenic 40.0%
TGGGAATCCATTTCATGTCT+CGG + chr3_4:72460554-72460573 Msa0520070:intron 40.0%
ATTTCACTTCGAGGTAGGTT+GGG - chr3_4:72460650-72460669 None:intergenic 40.0%
CATTCATTTCACTTCGAGGT+AGG - chr3_4:72460655-72460674 None:intergenic 40.0%
CTCACATTCATTTCACTTCG+AGG - chr3_4:72460659-72460678 None:intergenic 40.0%
GCTGCTGTACATTTGATACA+GGG - chr3_4:72460705-72460724 None:intergenic 40.0%
AGCTGCTGTACATTTGATAC+AGG - chr3_4:72460706-72460725 None:intergenic 40.0%
TTTCTCTTTCAGATGACGAC+AGG - chr3_4:72460796-72460815 None:intergenic 40.0%
TATATGGTATACACTGCTGC+GGG + chr3_4:72460822-72460841 Msa0520070:exon 40.0%
! TACCATTGTCACTTGGAAGT+TGG + chr3_4:72460970-72460989 Msa0520070:intron 40.0%
TTCCAACTTCCAAGTGACAA+TGG - chr3_4:72460975-72460994 None:intergenic 40.0%
TTGAAGCAGTATTGCTTAGG+CGG - chr3_4:72461012-72461031 None:intergenic 40.0%
CGAAATCCTTCAAACAGCTT+TGG - chr3_4:72461143-72461162 None:intergenic 40.0%
GGGAAACAGACAAAAAGCAA+GGG - chr3_4:72461217-72461236 None:intergenic 40.0%
TGGGAAACAGACAAAAAGCA+AGG - chr3_4:72461218-72461237 None:intergenic 40.0%
TTGCCAAGATTGATCGTCAA+TGG + chr3_4:72461309-72461328 Msa0520070:intron 40.0%
! CAATGGTGGTGTTAGTTTGA+CGG + chr3_4:72461326-72461345 Msa0520070:intron 40.0%
TGTCATAAGACCATTGGAAC+TGG - chr3_4:72461499-72461518 None:intergenic 40.0%
!! TTTGGAGCCATGCCTTTTAA+AGG + chr3_4:72461668-72461687 Msa0520070:intron 40.0%
!! AGCCATGCCTTTTAAAGGAA+AGG + chr3_4:72461673-72461692 Msa0520070:intron 40.0%
! CACCTTTCCTTTAAAAGGCA+TGG - chr3_4:72461678-72461697 None:intergenic 40.0%
TAAAGGAAAGGTGAGAGTTG+AGG + chr3_4:72461685-72461704 Msa0520070:intron 40.0%
!! TGCTTGATCTTTGGTGTTCT+TGG + chr3_4:72461858-72461877 Msa0520070:intron 40.0%
AGTGAGACTATCCCACATTT+AGG - chr3_4:72462371-72462390 None:intergenic 40.0%
! TTGGGAAAGCCACTCAATTT+TGG + chr3_4:72462430-72462449 Msa0520070:intron 40.0%
AGCAGATGACCAAAATTGAG+TGG - chr3_4:72462442-72462461 None:intergenic 40.0%
TAAACTAGCATTGTCGCAGT+GGG + chr3_4:72462505-72462524 Msa0520070:intron 40.0%
TATGTGCCATATGCTTTGCA+TGG + chr3_4:72462663-72462682 Msa0520070:intron 40.0%
GTGGAACATCATAAAGGTTC+AGG + chr3_4:72462926-72462945 Msa0520070:CDS 40.0%
CATAAAGGTTCAGGAACCAA+AGG + chr3_4:72462935-72462954 Msa0520070:CDS 40.0%
!!! CTTTATATTTTTGGGTGGGG+AGG + chr3_4:72463009-72463028 Msa0520070:intron 40.0%
CATCTTGTCTCGTTGATACT+TGG + chr3_4:72463044-72463063 Msa0520070:intron 40.0%
TTGTCTCGTTGATACTTGGT+TGG + chr3_4:72463048-72463067 Msa0520070:intron 40.0%
!! GGTTGGTGACAACTAAATTC+GGG + chr3_4:72463065-72463084 Msa0520070:intron 40.0%
ATCACTGCCAGCAAATGATA+AGG - chr3_4:72463409-72463428 None:intergenic 40.0%
AGTCATGTTGCATCATTGAC+TGG - chr3_4:72463576-72463595 None:intergenic 40.0%
CACTAAACCTCTGTCTAAGA+AGG - chr3_4:72463642-72463661 None:intergenic 40.0%
AATCATAAAGCCATCTGGCA+AGG - chr3_4:72463763-72463782 None:intergenic 40.0%
! TGAAACACTCGTGGCAATTT+TGG - chr3_4:72463861-72463880 None:intergenic 40.0%
! AGTGCTGAACTTGTCTCAAA+TGG + chr3_4:72463908-72463927 Msa0520070:three_prime_UTR 40.0%
AATTATTGGGAGACAGGGAG+AGG + chr3_4:72458305-72458324 Msa0520070:five_prime_UTR 45.0%
ATTCAGTGTTTGTAAGGCGG+TGG - chr3_4:72458354-72458373 None:intergenic 45.0%
GATTTCCCTTGATGCAGGTT+AGG + chr3_4:72458679-72458698 Msa0520070:intron 45.0%
CAAACACCTAACCTGCATCA+AGG - chr3_4:72458688-72458707 None:intergenic 45.0%
TGACTGTTTGTCATGGAGGA+AGG + chr3_4:72458706-72458725 Msa0520070:five_prime_UTR 45.0%
GACTGTTTGTCATGGAGGAA+GGG + chr3_4:72458707-72458726 Msa0520070:five_prime_UTR 45.0%
ACTGTTTGTCATGGAGGAAG+GGG + chr3_4:72458708-72458727 Msa0520070:five_prime_UTR 45.0%
TTTAAGGGTCTGTTTGGGAG+GGG + chr3_4:72459628-72459647 Msa0520070:intron 45.0%
!!! TTGGATGGAGGGTTTTGGAA+GGG - chr3_4:72459835-72459854 None:intergenic 45.0%
!!! TTTGGATGGAGGGTTTTGGA+AGG - chr3_4:72459836-72459855 None:intergenic 45.0%
! TGTGTTTGGATGGAGGGTTT+TGG - chr3_4:72459840-72459859 None:intergenic 45.0%
TTAGGGTGTGTTTGGATGGA+GGG - chr3_4:72459846-72459865 None:intergenic 45.0%
TCCATCCAAACACACCCTAA+GGG + chr3_4:72459846-72459865 Msa0520070:intron 45.0%
TTCCCGGGAAAGTTATTCCA+AGG - chr3_4:72459902-72459921 None:intergenic 45.0%
AGAACGTGTGGGGTAAAGTA+GGG + chr3_4:72460341-72460360 Msa0520070:intron 45.0%
!! TGGGGTAAAGTAGGGGTATT+AGG + chr3_4:72460349-72460368 Msa0520070:intron 45.0%
!! GGGGTAAAGTAGGGGTATTA+GGG + chr3_4:72460350-72460369 Msa0520070:intron 45.0%
!! GGGTAAAGTAGGGGTATTAG+GGG + chr3_4:72460351-72460370 Msa0520070:intron 45.0%
! GGGGATTTTTACTCTGAACG+TGG + chr3_4:72460370-72460389 Msa0520070:intron 45.0%
TGAACGTGGAGTTCATTCCT+GGG + chr3_4:72460384-72460403 Msa0520070:intron 45.0%
! TTTTTCCGGTCCTCTATTCC+TGG + chr3_4:72460534-72460553 Msa0520070:intron 45.0%
! TTTTCCGGTCCTCTATTCCT+GGG + chr3_4:72460535-72460554 Msa0520070:intron 45.0%
! GAGACATGAAATGGATTCCC+AGG - chr3_4:72460555-72460574 None:intergenic 45.0%
CATTTCACTTCGAGGTAGGT+TGG - chr3_4:72460651-72460670 None:intergenic 45.0%
TGAAGCAGTATTGCTTAGGC+GGG - chr3_4:72461011-72461030 None:intergenic 45.0%
CCACCATTGACGATCAATCT+TGG - chr3_4:72461315-72461334 None:intergenic 45.0%
CCAAGATTGATCGTCAATGG+TGG + chr3_4:72461312-72461331 Msa0520070:intron 45.0%
ATCACGTGACGTGTTTCAAG+TGG - chr3_4:72461428-72461447 None:intergenic 45.0%
ACTTGAAACACGTCACGTGA+TGG + chr3_4:72461427-72461446 Msa0520070:intron 45.0%
AAAACAACGAACACTCCAGC+AGG - chr3_4:72461583-72461602 None:intergenic 45.0%
ATTTGGACGGACCTTTGATC+TGG + chr3_4:72461717-72461736 Msa0520070:intron 45.0%
CTGCATGGTACTAGAAAGAG+TGG - chr3_4:72461753-72461772 None:intergenic 45.0%
GGAAGGAGCAAACTATTGTC+TGG - chr3_4:72461831-72461850 None:intergenic 45.0%
AGATCAAGCAGAGGATTGGA+AGG - chr3_4:72461848-72461867 None:intergenic 45.0%
CCAAAGATCAAGCAGAGGAT+TGG - chr3_4:72461852-72461871 None:intergenic 45.0%
CCAATCCTCTGCTTGATCTT+TGG + chr3_4:72461849-72461868 Msa0520070:intron 45.0%
GAACACCAAAGATCAAGCAG+AGG - chr3_4:72461857-72461876 None:intergenic 45.0%
! TTTTCTAAGCCTGTGTGCGT+TGG + chr3_4:72461998-72462017 Msa0520070:intron 45.0%
GGCAAAACTGGCTACACTAA+TGG - chr3_4:72462055-72462074 None:intergenic 45.0%
TACACTGAAGTGGGCAAAAC+TGG - chr3_4:72462067-72462086 None:intergenic 45.0%
GTTGGTTGCTACACTGAAGT+GGG - chr3_4:72462076-72462095 None:intergenic 45.0%
! TGTTGGTTGCTACACTGAAG+TGG - chr3_4:72462077-72462096 None:intergenic 45.0%
CTAAACTAGCATTGTCGCAG+TGG + chr3_4:72462504-72462523 Msa0520070:intron 45.0%
ATTGTCGCAGTGGGAATTGA+GGG + chr3_4:72462514-72462533 Msa0520070:intron 45.0%
ACGGTTCCATGCAAAGCATA+TGG - chr3_4:72462672-72462691 None:intergenic 45.0%
!! ATGGTGGACACTATGCATCA+CGG - chr3_4:72462691-72462710 None:intergenic 45.0%
CATTGTAAATTTGCACGCGG+AGG + chr3_4:72462823-72462842 Msa0520070:intron 45.0%
! AATTTGCACGCGGAGGTTTT+AGG + chr3_4:72462830-72462849 Msa0520070:intron 45.0%
GTTGATGCAATACAGGCTTG+TGG + chr3_4:72462852-72462871 Msa0520070:CDS 45.0%
! GTCTACCATCAGCAGTCTTT+TGG - chr3_4:72462881-72462900 None:intergenic 45.0%
CTGCTGATGGTAGACGATTT+CGG + chr3_4:72462886-72462905 Msa0520070:CDS 45.0%
ATGGTAGACGATTTCGGAGT+GGG + chr3_4:72462892-72462911 Msa0520070:CDS 45.0%
!! GGTTTGGCCTTATCATTTGC+TGG + chr3_4:72463399-72463418 Msa0520070:CDS 45.0%
! TCATTTGCTGGCAGTGATCA+AGG + chr3_4:72463411-72463430 Msa0520070:CDS 45.0%
AGGATGTAGTCTTCGCTTGA+GGG - chr3_4:72463682-72463701 None:intergenic 45.0%
AAGGATGTAGTCTTCGCTTG+AGG - chr3_4:72463683-72463702 None:intergenic 45.0%
AAAGGGTGGAGAGACCAAAT+AGG - chr3_4:72463718-72463737 None:intergenic 45.0%
GAAACGAGGAAATGAAAGGG+TGG - chr3_4:72463732-72463751 None:intergenic 45.0%
ATGGAAGAAGTGGGGTATAG+TGG + chr3_4:72463811-72463830 Msa0520070:three_prime_UTR 45.0%
!! TAATTAAAAAAAAAAAAGAA+CGG - chr3_4:72462230-72462249 None:intergenic 5.0%
!!! TGTTTGGGAGGGGTTTTGGA+GGG + chr3_4:72459638-72459657 Msa0520070:intron 50.0%
!!! ATGGAGGGTTTTGGAAGGGA+GGG - chr3_4:72459831-72459850 None:intergenic 50.0%
CTTAGGGTGTGTTTGGATGG+AGG - chr3_4:72459847-72459866 None:intergenic 50.0%
CTCCATCCAAACACACCCTA+AGG + chr3_4:72459845-72459864 Msa0520070:intron 50.0%
CCATCCAAACACACCCTAAG+GGG + chr3_4:72459847-72459866 Msa0520070:intron 50.0%
CATCCAAACACACCCTAAGG+GGG + chr3_4:72459848-72459867 Msa0520070:intron 50.0%
AAATTGGAGGGGAGAACGTG+TGG + chr3_4:72460329-72460348 Msa0520070:intron 50.0%
AATTGGAGGGGAGAACGTGT+GGG + chr3_4:72460330-72460349 Msa0520070:intron 50.0%
GAGAACGTGTGGGGTAAAGT+AGG + chr3_4:72460340-72460359 Msa0520070:intron 50.0%
GAACGTGTGGGGTAAAGTAG+GGG + chr3_4:72460342-72460361 Msa0520070:intron 50.0%
CTGAACGTGGAGTTCATTCC+TGG + chr3_4:72460383-72460402 Msa0520070:intron 50.0%
! TTTTCCAACCCCTCTCTCAC+TGG + chr3_4:72460415-72460434 Msa0520070:intron 50.0%
TATTCCAGTGAGAGAGGGGT+TGG - chr3_4:72460422-72460441 None:intergenic 50.0%
GATTCCCAGGAATAGAGGAC+CGG - chr3_4:72460542-72460561 None:intergenic 50.0%
! CTTAATTTGGCTTCCCTCCC+TGG + chr3_4:72461534-72461553 Msa0520070:intron 50.0%
AATGAGTGGCCATTGAGCCA+GGG - chr3_4:72461554-72461573 None:intergenic 50.0%
CCAGCAGGAGATTCAATGAG+TGG - chr3_4:72461568-72461587 None:intergenic 50.0%
CCACTCATTGAATCTCCTGC+TGG + chr3_4:72461565-72461584 Msa0520070:intron 50.0%
TCAGTAGTTTCCCCTTCACC+AGG - chr3_4:72462024-72462043 None:intergenic 50.0%
CATTGTCGCAGTGGGAATTG+AGG + chr3_4:72462513-72462532 Msa0520070:intron 50.0%
GATGCAATACAGGCTTGTGG+AGG + chr3_4:72462855-72462874 Msa0520070:CDS 50.0%
GATGGTAGACGATTTCGGAG+TGG + chr3_4:72462891-72462910 Msa0520070:CDS 50.0%
TGGTAGACGATTTCGGAGTG+GGG + chr3_4:72462893-72462912 Msa0520070:CDS 50.0%
!! TTTTGGGTGGGGAGGAACTT+AGG + chr3_4:72463017-72463036 Msa0520070:intron 50.0%
! GGTCTGTTTGGGAGGGGTTT+TGG + chr3_4:72459634-72459653 Msa0520070:intron 55.0%
!! CTGTTTGGGAGGGGTTTTGG+AGG + chr3_4:72459637-72459656 Msa0520070:intron 55.0%
!!! GTTTGGGAGGGGTTTTGGAG+GGG + chr3_4:72459639-72459658 Msa0520070:intron 55.0%
!!! GGTTTTGGAGGGGAGGACTT+TGG + chr3_4:72459649-72459668 Msa0520070:intron 55.0%
TTTGGAGGGGAGGACTTTGG+AGG + chr3_4:72459652-72459671 Msa0520070:intron 55.0%
TTGGAGGGGAGGACTTTGGA+GGG + chr3_4:72459653-72459672 Msa0520070:intron 55.0%
!!! TGGAGGGTTTTGGAAGGGAG+GGG - chr3_4:72459830-72459849 None:intergenic 55.0%
!!! GATGGAGGGTTTTGGAAGGG+AGG - chr3_4:72459832-72459851 None:intergenic 55.0%
CCCCTTAGGGTGTGTTTGGA+TGG - chr3_4:72459850-72459869 None:intergenic 55.0%
ACACCCCCTTAGGGTGTGTT+TGG - chr3_4:72459854-72459873 None:intergenic 55.0%
ATTGGAGGGGAGAACGTGTG+GGG + chr3_4:72460331-72460350 Msa0520070:intron 55.0%
! TACACTGCTGCGGGTTGTCT+TGG + chr3_4:72460831-72460850 Msa0520070:CDS 55.0%
CAATGAGTGGCCATTGAGCC+AGG - chr3_4:72461555-72461574 None:intergenic 55.0%
GGAGGCCAAAAGACTGCTGA+TGG + chr3_4:72462873-72462892 Msa0520070:CDS 55.0%
GGTAGACGATTTCGGAGTGG+GGG + chr3_4:72462894-72462913 Msa0520070:CDS 55.0%
!!! GGGTTTTGGAAGGGAGGGGA+GGG - chr3_4:72459826-72459845 None:intergenic 60.0%
!!! AGGGTTTTGGAAGGGAGGGG+AGG - chr3_4:72459827-72459846 None:intergenic 60.0%
AGTGGCCATTGAGCCAGGGA+GGG - chr3_4:72461550-72461569 None:intergenic 60.0%
! TAAGCCTGTGTGCGTTGGCC+TGG + chr3_4:72462003-72462022 Msa0520070:intron 60.0%
TTCACCAGGCCAACGCACAC+AGG - chr3_4:72462010-72462029 None:intergenic 60.0%
! TGTGTGCGTTGGCCTGGTGA+AGG + chr3_4:72462009-72462028 Msa0520070:intron 60.0%
! GTGTGCGTTGGCCTGGTGAA+GGG + chr3_4:72462010-72462029 Msa0520070:intron 60.0%
! TGTGCGTTGGCCTGGTGAAG+GGG + chr3_4:72462011-72462030 Msa0520070:intron 60.0%
AGACGATTTCGGAGTGGGGG+TGG + chr3_4:72462897-72462916 Msa0520070:CDS 60.0%
!!! TGGGAGGGGTTTTGGAGGGG+AGG + chr3_4:72459642-72459661 Msa0520070:intron 65.0%
GGCTTCCCTCCCTGGCTCAA+TGG + chr3_4:72461542-72461561 Msa0520070:intron 65.0%
GAGTGGCCATTGAGCCAGGG+AGG - chr3_4:72461551-72461570 None:intergenic 65.0%
GGAGTGGGGGTGGCATACTG+TGG + chr3_4:72462907-72462926 Msa0520070:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 72458296 72463968 72458296 ID=Msa0520070;Name=Msa0520070
chr3_4 mRNA 72458296 72463968 72458296 ID=Msa0520070-mRNA-1;Parent=Msa0520070;Name=Msa0520070-mRNA-1;_AED=0.23;_eAED=0.23;_QI=522|1|1|1|0.8|0.66|6|375|153
chr3_4 exon 72458296 72458417 72458296 ID=Msa0520070-mRNA-1:exon:20040;Parent=Msa0520070-mRNA-1
chr3_4 exon 72458696 72458981 72458696 ID=Msa0520070-mRNA-1:exon:20041;Parent=Msa0520070-mRNA-1
chr3_4 exon 72459430 72459497 72459430 ID=Msa0520070-mRNA-1:exon:20042;Parent=Msa0520070-mRNA-1
chr3_4 exon 72460779 72460884 72460779 ID=Msa0520070-mRNA-1:exon:20043;Parent=Msa0520070-mRNA-1
chr3_4 exon 72462852 72462995 72462852 ID=Msa0520070-mRNA-1:exon:20044;Parent=Msa0520070-mRNA-1
chr3_4 exon 72463336 72463968 72463336 ID=Msa0520070-mRNA-1:exon:20045;Parent=Msa0520070-mRNA-1
chr3_4 five_prime_UTR 72458296 72458417 72458296 ID=Msa0520070-mRNA-1:five_prime_utr;Parent=Msa0520070-mRNA-1
chr3_4 five_prime_UTR 72458696 72458981 72458696 ID=Msa0520070-mRNA-1:five_prime_utr;Parent=Msa0520070-mRNA-1
chr3_4 five_prime_UTR 72459430 72459497 72459430 ID=Msa0520070-mRNA-1:five_prime_utr;Parent=Msa0520070-mRNA-1
chr3_4 five_prime_UTR 72460779 72460824 72460779 ID=Msa0520070-mRNA-1:five_prime_utr;Parent=Msa0520070-mRNA-1
chr3_4 CDS 72460825 72460884 72460825 ID=Msa0520070-mRNA-1:cds;Parent=Msa0520070-mRNA-1
chr3_4 CDS 72462852 72462995 72462852 ID=Msa0520070-mRNA-1:cds;Parent=Msa0520070-mRNA-1
chr3_4 CDS 72463336 72463593 72463336 ID=Msa0520070-mRNA-1:cds;Parent=Msa0520070-mRNA-1
chr3_4 three_prime_UTR 72463594 72463968 72463594 ID=Msa0520070-mRNA-1:three_prime_utr;Parent=Msa0520070-mRNA-1
Gene Sequence

>Msa0520070

ATGGTATACACTGCTGCGGGTTGTCTTGGAATGTTTGCATTAAGTGATATCATCAAAGAGGTTGATGCAATACAGGCTTGTGGAGGCCAAAAGACTGCTGATGGTAGACGATTTCGGAGTGGGGGTGGCATACTGTGGAACATCATAAAGGTTCAGGAACCAAAGGCCTACAAAGAGATAATGAAAAGAGCAAAAGAGTTTGAGAAGCAATTCAGGCAGCCAAATGTTAAACAACTAAATATGCCAAAGAAAGATGATTCTTCTCAAGGTTTGGCCTTATCATTTGCTGGCAGTGATCAAGGAAATGTTTCAGACAGCGCCTTTCTTGCATCAGAAATGCAAAATCAACACGAACCGGTTACTTCTAAAGAAAATTTTATATCTGTTCATGACAGGTTAAGGATACCTGTTTCCTATGATGATGATCTACTTGGAGATAATCCAGTCAATGATGCAACATGA
Protein sequence

>Msa0520070

MVYTAAGCLGMFALSDIIKEVDAIQACGGQKTADGRRFRSGGGILWNIIKVQEPKAYKEIMKRAKEFEKQFRQPNVKQLNMPKKDDSSQGLALSFAGSDQGNVSDSAFLASEMQNQHEPVTSKENFISVHDRLRIPVSYDDDLLGDNPVNDAT*