AlfalfaGEDB | Msa1279380

M. sativa cultivar zhongmu-4 / Msa1279380

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001780	Msa1279380	0.817934	2.549280e-52	-8.615850e-47
Msa0003700	Msa1279380	0.815085	1.107318e-51	-8.615850e-47
Msa0008110	Msa1279380	0.833483	5.197378e-56	-8.615850e-47
Msa0017510	Msa1279380	0.823921	1.067635e-53	-8.615850e-47
Msa0031340	Msa1279380	0.800683	1.284411e-48	-8.615850e-47
Msa0046100	Msa1279380	0.803442	3.478956e-49	-8.615850e-47
Msa0057420	Msa1279380	0.819972	8.771516e-53	-8.615850e-47
Msa0094120	Msa1279380	0.828999	6.577054e-55	-8.615850e-47
Msa0110970	Msa1279380	0.838172	3.367447e-57	-8.615850e-47
Msa0121810	Msa1279380	0.807595	4.681527e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 202 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGGGAGGAAGAGGA+GGG	0.542826	8_3:+16330058	Msa1279380:three_prime_UTR
AAAAGTTGGAGGAGGCAATG+CGG	0.738384	8_3:+16329190	Msa1279380:three_prime_UTR
AAACCTATAAGCTAAATTTC+CGG	0.323579	8_3:-16328560	None:intergenic
AAACTCAATTTCTCTGTTCA+AGG	0.388706	8_3:+16327517	Msa1279380:CDS
AAAGGTTGTGAGATGAATGT+GGG	0.687470	8_3:+16329768	Msa1279380:three_prime_UTR
AAGAATCTGGTGTTGTTGTT+AGG	0.341100	8_3:+16328497	Msa1279380:three_prime_UTR
AAGAGACGATGAAAGAGGCA+AGG	0.606045	8_3:+16330894	Msa1279380:three_prime_UTR
AAGAGCTGAGAAACTTGAAA+TGG	0.429062	8_3:+16329713	Msa1279380:three_prime_UTR
AAGTTGGGAGAGGTCAAGCA+AGG	0.613787	8_3:+16329498	Msa1279380:three_prime_UTR
AATGAATTGTATTAGATTGA+AGG	0.437848	8_3:-16328372	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCAATTTCTCTGTTCA+AGG	+	chr8_3:16327517-16327536	Msa1279380:CDS	30.0%
AGAAGATGATTGAAGAATGA+TGG	-	chr8_3:16328156-16328175	None:intergenic	30.0%
TATTAGATTGAAGGTGAATG+AGG	-	chr8_3:16328366-16328385	None:intergenic	30.0%
CTTCTAAGCAAAGTAGTTAT+AGG	+	chr8_3:16328593-16328612	Msa1279380:three_prime_UTR	30.0%
GCATAGTCAAGAAGTTTATA+AGG	+	chr8_3:16328615-16328634	Msa1279380:three_prime_UTR	30.0%
AGTTTATAAGGCCATGATTA+AGG	+	chr8_3:16328627-16328646	Msa1279380:three_prime_UTR	30.0%
TTAGATGAAATGCCTAAGTA+TGG	+	chr8_3:16328799-16328818	Msa1279380:three_prime_UTR	30.0%
GATGTAAAATGCTTAACTGT+CGG	-	chr8_3:16328934-16328953	None:intergenic	30.0%
ACGTATACTACATTGATAAG+TGG	+	chr8_3:16329258-16329277	Msa1279380:three_prime_UTR	30.0%
CGTATACTACATTGATAAGT+GGG	+	chr8_3:16329259-16329278	Msa1279380:three_prime_UTR	30.0%

Showing 1 to 10 of 378 entries

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	16327363	16332769	16327363	ID=Msa1279380;Name=Msa1279380
chr8_3	mRNA	16327363	16332769	16327363	ID=Msa1279380-mRNA-1;Parent=Msa1279380;Name=Msa1279380-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|1\|0.8\|1\|0\|0.2\|5\|2901\|74
chr8_3	exon	16327363	16327538	16327363	ID=Msa1279380-mRNA-1:exon:6381;Parent=Msa1279380-mRNA-1
chr8_3	exon	16328089	16330311	16328089	ID=Msa1279380-mRNA-1:exon:6382;Parent=Msa1279380-mRNA-1
chr8_3	exon	16330691	16330727	16330691	ID=Msa1279380-mRNA-1:exon:6383;Parent=Msa1279380-mRNA-1
chr8_3	exon	16330822	16330973	16330822	ID=Msa1279380-mRNA-1:exon:6384;Parent=Msa1279380-mRNA-1
chr8_3	exon	16332232	16332769	16332232	ID=Msa1279380-mRNA-1:exon:6385;Parent=Msa1279380-mRNA-1
chr8_3	CDS	16327363	16327538	16327363	ID=Msa1279380-mRNA-1:cds;Parent=Msa1279380-mRNA-1
chr8_3	CDS	16328089	16328137	16328089	ID=Msa1279380-mRNA-1:cds;Parent=Msa1279380-mRNA-1
chr8_3	three_prime_UTR	16328138	16330311	16328138	ID=Msa1279380-mRNA-1:three_prime_utr;Parent=Msa1279380-mRNA-1
chr8_3	three_prime_UTR	16330691	16330727	16330691	ID=Msa1279380-mRNA-1:three_prime_utr;Parent=Msa1279380-mRNA-1
chr8_3	three_prime_UTR	16330822	16330973	16330822	ID=Msa1279380-mRNA-1:three_prime_utr;Parent=Msa1279380-mRNA-1
chr8_3	three_prime_UTR	16332232	16332769	16332232	ID=Msa1279380-mRNA-1:three_prime_utr;Parent=Msa1279380-mRNA-1

Gene Sequence	>Msa1279380 AATAACACGTTTGTCTTTCCTTACTCTCTCTCACTCACTCTGTGTGTGTTCTCCCTCAATCCAGCGCCGCCGTGTCGTACTTCCTCACTCGCCCTACCTCCTCCCAATCACCATCGCATCACTCTCACAGTCGTAAGCTCAATCTCGCAGTCGGAAACTCAATTTCTCTGTTCAAGGGAGATCGGTGATGACGCAATCGTTAAGAAGTTTGTGGAAACACGATGA
Protein sequence	>Msa1279380 NNTFVFPYSLSLTLCVFSLNPAPPCRTSSLALPPPNHHRITLTVVSSISQSETQFLCSREIGDDAIVKKFVETR*