AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381550 MtrunA17_Chr1g0151791 53.077 260 118 2 1 256 1 260 8.81e-85 253
Msa0381550 MtrunA17_Chr3g0135531 91.765 85 6 1 1 85 1 84 1.61e-31 111
Msa0381550 MtrunA17_Chr3g0135551 92.941 85 5 1 1 85 1 84 1.65e-31 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381550 AT3G20430.1 46.768 263 127 7 1 255 1 258 1.98e-67 210

Find 76 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGCAAGAATTCGAATTAT+TGG 0.185828 3_1:+83786712 None:intergenic
TTCTTTCATGTGTTCCTATT+TGG 0.197768 3_1:+83792121 Msa0381550:three_prime_UTR
TGAAACACTCGTGGCAATTT+TGG 0.217790 3_1:-83792278 None:intergenic
GCCCAATTTGCAAAATGTTT+TGG 0.258923 3_1:+83787237 Msa0381550:CDS
TGAGAAGAATCATCTTTCTT+TGG 0.263292 3_1:-83791795 None:intergenic
CTTTATGATTATATAGGATT+AGG 0.263431 3_1:+83792193 Msa0381550:three_prime_UTR
CTGTCTATATTTGTGACTTT+AGG 0.289769 3_1:-83787379 None:intergenic
TGTTGAAGAAGGAGAGTTAG+TGG 0.307280 3_1:+83787213 Msa0381550:CDS
ATTATCTCTTTGTAGGCCTT+TGG 0.314430 3_1:-83791371 None:intergenic
ATGCAAGAATTCGAATTATT+GGG 0.316904 3_1:+83786713 None:intergenic
TATTAATGCAGAAGCAATTC+AGG 0.317250 3_1:+83791745 Msa0381550:intron
AGATGGCTTTATGATTATAT+AGG 0.318884 3_1:+83792187 Msa0381550:three_prime_UTR
GTCTACCATCAGCAGTCTTT+TGG 0.323934 3_1:-83791298 None:intergenic
ATATTTAGTTGTTTAACATT+TGG 0.343026 3_1:-83791771 None:intergenic
TTTATGATTATATAGGATTA+GGG 0.351487 3_1:+83792194 Msa0381550:three_prime_UTR
AGATGATTCTTCTCAAGGTT+TGG 0.368080 3_1:+83791803 Msa0381550:CDS
TATCTGTTCATGACAGGTTA+AGG 0.381152 3_1:+83791931 Msa0381550:CDS
CTGCTGATGGTAGACGATTT+CGG 0.382090 3_1:+83791306 Msa0381550:CDS
GGTTTGGCCTTATCATTTGC+TGG 0.387229 3_1:+83791819 Msa0381550:CDS
GAAGAACAAGAGAAAGAGAA+AGG 0.401070 3_1:+83787348 Msa0381550:CDS
GAAAAGAGCAAAAGAGTTTG+AGG 0.403168 3_1:+83791394 Msa0381550:CDS
GTGGAACATCATAAAGGTTC+AGG 0.418166 3_1:+83791346 Msa0381550:CDS
TACACTGCTGCGGGTTGTCT+TGG 0.419749 3_1:+83789251 Msa0381550:CDS
AGTGCTGAACTTGTCTCAAA+TGG 0.426040 3_1:+83792328 Msa0381550:three_prime_UTR
AAAGGGTGGAGAGACCAAAT+AGG 0.432254 3_1:-83792135 None:intergenic
TCATTTGCTGGCAGTGATCA+AGG 0.433421 3_1:+83791831 Msa0381550:CDS
ATGGAAGAAGTGGGGTATAG+TGG 0.440867 3_1:+83792231 Msa0381550:three_prime_UTR
ATGGTAGACGATTTCGGAGT+GGG 0.444653 3_1:+83791312 Msa0381550:CDS
ATGCTGATTCAGTGTTTGTA+AGG 0.449143 3_1:-83786778 None:intergenic
AGATCATCATCATAGGAAAC+AGG 0.457123 3_1:-83791957 None:intergenic
AAGAAAGATGATTCTTCTCA+AGG 0.457634 3_1:+83791798 Msa0381550:CDS
TTGCATTTCTGATGCAAGAA+AGG 0.457701 3_1:-83791871 None:intergenic
TCCTATGATGATGATCTACT+TGG 0.470099 3_1:+83791963 Msa0381550:CDS
TATATAATCATAAAGCCATC+TGG 0.480299 3_1:-83792185 None:intergenic
AAGAGAAAGAGAAAGGGTTC+AGG 0.486855 3_1:+83787355 Msa0381550:CDS
TCCAAGTAGATCATCATCAT+AGG 0.495710 3_1:-83791964 None:intergenic
CATACTGTGGAACATCATAA+AGG 0.500400 3_1:+83791340 Msa0381550:CDS
GACTGTTTGTCATGGAGGAA+GGG 0.504833 3_1:+83787128 Msa0381550:exon
AATGCAAAATCAACACGAAC+CGG 0.510093 3_1:+83791887 Msa0381550:CDS
ATCACTGCCAGCAAATGATA+AGG 0.511776 3_1:-83791826 None:intergenic
ATTCAGTGTTTGTAAGGCGG+TGG 0.511836 3_1:-83786772 None:intergenic
CACTAAACCTCTGTCTAAGA+AGG 0.512541 3_1:-83792059 None:intergenic
GAATGTATCGTTGTTATAGT+TGG 0.514326 3_1:+83792255 Msa0381550:three_prime_UTR
AGTCATGTTGCATCATTGAC+TGG 0.517971 3_1:-83791993 None:intergenic
ACTGTTTGTCATGGAGGAAG+GGG 0.519176 3_1:+83787129 Msa0381550:exon
AAGAACAAGAGAAAGAGAAA+GGG 0.523902 3_1:+83787349 Msa0381550:CDS
AGGATGTAGTCTTCGCTTGA+GGG 0.524918 3_1:-83792099 None:intergenic
TAAAGAAACGAGGAAATGAA+AGG 0.525448 3_1:-83792153 None:intergenic
TTTCTCTTTCAGATGACGAC+AGG 0.526223 3_1:-83789213 None:intergenic
AGGTGTTTGACTGTTTGTCA+TGG 0.535671 3_1:+83787120 Msa0381550:exon
TGACTGTTTGTCATGGAGGA+AGG 0.536588 3_1:+83787127 Msa0381550:exon
GAACTTGTCTCAAATGGATA+CGG 0.539039 3_1:+83792334 Msa0381550:three_prime_UTR
GACATGATTGATGTTGAAGA+AGG 0.542173 3_1:+83787202 Msa0381550:CDS
AAGGATGTAGTCTTCGCTTG+AGG 0.544346 3_1:-83792100 None:intergenic
ATTCGAATTATTGGGAGACA+TGG 0.548968 3_1:+83786721 Msa0381550:five_prime_UTR
TCTTTATTTACCTTGCCAGA+TGG 0.557795 3_1:+83792170 Msa0381550:three_prime_UTR
CTAAAGTCACAAATATAGAC+AGG 0.559077 3_1:+83787380 Msa0381550:CDS
AAAGAAACGAGGAAATGAAA+GGG 0.559782 3_1:-83792152 None:intergenic
AAATAGGAACACATGAAAGA+AGG 0.572537 3_1:-83792119 None:intergenic
AATCATAAAGCCATCTGGCA+AGG 0.592575 3_1:-83792180 None:intergenic
AATTATTGGGAGACATGGAG+AGG 0.596086 3_1:+83786726 Msa0381550:five_prime_UTR
GTTGATGCAATACAGGCTTG+TGG 0.597539 3_1:+83791272 Msa0381550:CDS
ATTAAGTGATATCATCAAAG+AGG 0.607067 3_1:+83789283 Msa0381550:CDS
TGGTAGACGATTTCGGAGTG+GGG 0.613310 3_1:+83791313 Msa0381550:CDS
CATAAAGGTTCAGGAACCAA+AGG 0.616588 3_1:+83791355 Msa0381550:CDS
GGTAGACGATTTCGGAGTGG+GGG 0.617630 3_1:+83791314 Msa0381550:CDS
TATATGGTATACACTGCTGC+GGG 0.621075 3_1:+83789242 Msa0381550:CDS
GAAACGAGGAAATGAAAGGG+TGG 0.627679 3_1:-83792149 None:intergenic
CTGATTCAGTGTTTGTAAGG+CGG 0.628840 3_1:-83786775 None:intergenic
ATATATGGTATACACTGCTG+CGG 0.631527 3_1:+83789241 Msa0381550:CDS
AAAATCTAATGAAACACTCG+TGG 0.643803 3_1:-83792287 None:intergenic
GGAGGCCAAAAGACTGCTGA+TGG 0.663490 3_1:+83791293 Msa0381550:CDS
GATGGTAGACGATTTCGGAG+TGG 0.663553 3_1:+83791311 Msa0381550:CDS
GATGCAATACAGGCTTGTGG+AGG 0.676395 3_1:+83791275 Msa0381550:CDS
TGTTTGACTGTTTGTCATGG+AGG 0.687318 3_1:+83787123 Msa0381550:exon
GCAAGGTAAATAAAGAAACG+AGG 0.739293 3_1:-83792163 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAACAAAAAAATGTAAA+TGG - chr3_1:83786988-83787007 None:intergenic 10.0%
!!! AATTTTTGTAAAAAAATGTT+TGG + chr3_1:83788368-83788387 Msa0381550:intron 10.0%
!! ATGAAAATAAAAATAAAAAC+AGG - chr3_1:83791187-83791206 None:intergenic 10.0%
!!! TGAATAATCTTTATATTTTT+GGG + chr3_1:83791421-83791440 Msa0381550:intron 10.0%
!!! TTATCGGAATATTTTATTTT+AGG + chr3_1:83787432-83787451 Msa0381550:intron 15.0%
!!! TAAACTAAAAATGACATTTT+TGG + chr3_1:83787592-83787611 Msa0381550:intron 15.0%
!! AAATCCATAATAAACATTAT+GGG + chr3_1:83787647-83787666 Msa0381550:intron 15.0%
!! AGTCTAATATTAAGTATTTA+AGG + chr3_1:83788032-83788051 Msa0381550:intron 15.0%
!! GTCTAATATTAAGTATTTAA+GGG + chr3_1:83788033-83788052 Msa0381550:intron 15.0%
!!! TAAAAAACATTTTATAGTGT+CGG + chr3_1:83788198-83788217 Msa0381550:intron 15.0%
!!! ATTTTTTTACAAAAATTCCT+AGG - chr3_1:83788365-83788384 None:intergenic 15.0%
!!! ATAATTTTGACATTTATTTC+CGG - chr3_1:83788474-83788493 None:intergenic 15.0%
!!! TATGAAATATATATGGTTTT+TGG - chr3_1:83788524-83788543 None:intergenic 15.0%
!! CAGAAAATATGAAATATATA+TGG - chr3_1:83788531-83788550 None:intergenic 15.0%
!! TCAAATGACTTAAATAATAT+TGG + chr3_1:83789448-83789467 Msa0381550:intron 15.0%
!! GATTAAATTAAGTAAAACAA+AGG - chr3_1:83789882-83789901 None:intergenic 15.0%
!! TTTCTGAATATTTCTTAATT+TGG + chr3_1:83789941-83789960 Msa0381550:intron 15.0%
!!! GTGAATAATCTTTATATTTT+TGG + chr3_1:83791420-83791439 Msa0381550:intron 15.0%
!! ATATTTAGTTGTTTAACATT+TGG - chr3_1:83791774-83791793 None:intergenic 15.0%
!! TTTATGATTATATAGGATTA+GGG + chr3_1:83792194-83792213 Msa0381550:three_prime_UTR 15.0%
!! AAACAATACGCAATAAATAA+AGG - chr3_1:83786877-83786896 None:intergenic 20.0%
!!! TAAAAATGACATTTTTGGAT+TGG + chr3_1:83787597-83787616 Msa0381550:intron 20.0%
!! GAAATCCATAATAAACATTA+TGG + chr3_1:83787646-83787665 Msa0381550:intron 20.0%
!! AATCCATAATAAACATTATG+GGG + chr3_1:83787648-83787667 Msa0381550:intron 20.0%
!!! ATTTTAGCCTTTTTTATGTT+TGG + chr3_1:83787727-83787746 Msa0381550:intron 20.0%
!! AAACAAACCAAACATAAAAA+AGG - chr3_1:83787737-83787756 None:intergenic 20.0%
!!! CTTAGATTTTTTTTATTGTG+CGG + chr3_1:83787771-83787790 Msa0381550:intron 20.0%
!!! TTAGATTTTTTTTATTGTGC+GGG + chr3_1:83787772-83787791 Msa0381550:intron 20.0%
!!! TTAGTCTTATGCTTTTTTAT+TGG + chr3_1:83787937-83787956 Msa0381550:intron 20.0%
!!! TAATTTTGACATTTATTTCC+GGG - chr3_1:83788473-83788492 None:intergenic 20.0%
!!! CTATGCATTGTTTTTTTTTT+TGG + chr3_1:83788652-83788671 Msa0381550:intron 20.0%
!!! TCTACTTAAAGATGTTATTT+CGG + chr3_1:83789497-83789516 Msa0381550:intron 20.0%
!! ATGATTTGAACAAATGTATA+TGG - chr3_1:83789797-83789816 None:intergenic 20.0%
!!! TCTTTTATGTAAAGCAAATA+TGG + chr3_1:83790539-83790558 Msa0381550:intron 20.0%
!! GCAAATAAATAAAGAAACTT+TGG + chr3_1:83790687-83790706 Msa0381550:intron 20.0%
!!! TTTGCATATAGTGTTTATTT+TGG + chr3_1:83790827-83790846 Msa0381550:intron 20.0%
!!! ATATAGTGTTTATTTTGGTT+GGG + chr3_1:83790832-83790851 Msa0381550:intron 20.0%
!! AAAAATAAGTAAAGTCACTA+CGG - chr3_1:83790976-83790995 None:intergenic 20.0%
!! AATTTACAATGTATCAACTT+AGG - chr3_1:83791234-83791253 None:intergenic 20.0%
!!! ATAATCTTTATATTTTTGGG+TGG + chr3_1:83791424-83791443 Msa0381550:intron 20.0%
!!! TAATCTTTATATTTTTGGGT+GGG + chr3_1:83791425-83791444 Msa0381550:intron 20.0%
!! TTTGTAGTAACTATTAAGTA+GGG + chr3_1:83791551-83791570 Msa0381550:intron 20.0%
!! TATCCAAATAAATCAAGTAA+AGG + chr3_1:83791591-83791610 Msa0381550:intron 20.0%
!!! AAATTTTCTTTAGAAGTAAC+CGG - chr3_1:83791909-83791928 None:intergenic 20.0%
!! CTTTATGATTATATAGGATT+AGG + chr3_1:83792193-83792212 Msa0381550:three_prime_UTR 20.0%
! TTCAAATTGCACTTACAATT+AGG + chr3_1:83786915-83786934 Msa0381550:intron 25.0%
! TCAAATTGCACTTACAATTA+GGG + chr3_1:83786916-83786935 Msa0381550:intron 25.0%
!! TCCAAAACATTTTGCAAATT+GGG - chr3_1:83787241-83787260 None:intergenic 25.0%
!! TTCCAAAACATTTTGCAAAT+TGG - chr3_1:83787242-83787261 None:intergenic 25.0%
!!! ATTCATTGAGTTTTGGTTAT+CGG + chr3_1:83787416-83787435 Msa0381550:intron 25.0%
!! CAACTTAAGTTTCCAAATTT+TGG - chr3_1:83787537-83787556 None:intergenic 25.0%
! ATCCATAATAAACATTATGG+GGG + chr3_1:83787649-83787668 Msa0381550:intron 25.0%
! AGTTTATTAAGCCATCAATA+AGG - chr3_1:83787977-83787996 None:intergenic 25.0%
! AGGATACAAAAATAATTCCT+TGG + chr3_1:83788302-83788321 Msa0381550:intron 25.0%
! TGGTTTAAAAAGTAAAATCC+CGG + chr3_1:83788452-83788471 Msa0381550:intron 25.0%
! TGGTCTCTTGAATTTAAAAA+GGG - chr3_1:83788504-83788523 None:intergenic 25.0%
! TTGGTCTCTTGAATTTAAAA+AGG - chr3_1:83788505-83788524 None:intergenic 25.0%
!! TATTTTCTGCTAATAAAGCA+AGG + chr3_1:83788542-83788561 Msa0381550:intron 25.0%
! AATACTCATGTCAAACTTAA+TGG - chr3_1:83788590-83788609 None:intergenic 25.0%
!!! TCCATTTTTTTATAGAAGGA+AGG + chr3_1:83788721-83788740 Msa0381550:intron 25.0%
! TCCTTCCTTCTATAAAAAAA+TGG - chr3_1:83788725-83788744 None:intergenic 25.0%
! TAGAAGGAAGGAAAAAAAAT+TGG + chr3_1:83788733-83788752 Msa0381550:intron 25.0%
! GAAAGAGAAAAAGTCATATA+TGG + chr3_1:83789226-83789245 Msa0381550:CDS 25.0%
! ATTAAGTGATATCATCAAAG+AGG + chr3_1:83789283-83789302 Msa0381550:CDS 25.0%
!! ATAATATTGGTGATACTGTT+TGG + chr3_1:83789461-83789480 Msa0381550:intron 25.0%
! ATGTAAGAAACAGAGAAAAT+GGG - chr3_1:83789661-83789680 None:intergenic 25.0%
! AATGTAAGAAACAGAGAAAA+TGG - chr3_1:83789662-83789681 None:intergenic 25.0%
! AAGTTTCCATGTATTTAGAA+GGG - chr3_1:83789707-83789726 None:intergenic 25.0%
! AAAGTTTCCATGTATTTAGA+AGG - chr3_1:83789708-83789727 None:intergenic 25.0%
! ATTAAGTAAAACAAAGGTTG+TGG - chr3_1:83789876-83789895 None:intergenic 25.0%
! TTATTTCCCATCTCTTTAAT+AGG + chr3_1:83790052-83790071 Msa0381550:intron 25.0%
! AGTTGAGGTTATATACTATT+TGG + chr3_1:83790120-83790139 Msa0381550:intron 25.0%
! AATTAAAATCTGCAAGGTTA+GGG - chr3_1:83790228-83790247 None:intergenic 25.0%
! TCATTATTTACAAACTGTGA+AGG + chr3_1:83790311-83790330 Msa0381550:intron 25.0%
!! GATTTTCCTTTAAATATGCT+AGG + chr3_1:83790719-83790738 Msa0381550:intron 25.0%
! AAAATGCCTAGCATATTTAA+AGG - chr3_1:83790728-83790747 None:intergenic 25.0%
!! ATATGCTAGGCATTTTTAAA+AGG + chr3_1:83790732-83790751 Msa0381550:intron 25.0%
! AACCCAATTAAACTAAATAC+TGG - chr3_1:83790758-83790777 None:intergenic 25.0%
!!! CATATAGTGTTTATTTTGGT+TGG + chr3_1:83790831-83790850 Msa0381550:intron 25.0%
! TAGTTTAGATTCAGAAATCT+TGG - chr3_1:83790912-83790931 None:intergenic 25.0%
!!! GTAGTGACTTTACTTATTTT+TGG + chr3_1:83790975-83790994 Msa0381550:intron 25.0%
!!! AGTAGAGCTCATATTTTTAT+TGG - chr3_1:83791010-83791029 None:intergenic 25.0%
! TGTACATAAAATATAGATGG+TGG - chr3_1:83791127-83791146 None:intergenic 25.0%
! ACGTGTACATAAAATATAGA+TGG - chr3_1:83791130-83791149 None:intergenic 25.0%
!! TCTTTTCATTATCTCTTTGT+AGG - chr3_1:83791381-83791400 None:intergenic 25.0%
!!! AATCTTTATATTTTTGGGTG+GGG + chr3_1:83791426-83791445 Msa0381550:intron 25.0%
! ATAGTTACTACAAACATACA+TGG - chr3_1:83791545-83791564 None:intergenic 25.0%
! GTTTGTAGTAACTATTAAGT+AGG + chr3_1:83791550-83791569 Msa0381550:intron 25.0%
! TTGTAGTAACTATTAAGTAG+GGG + chr3_1:83791552-83791571 Msa0381550:intron 25.0%
! AAGCCTTTACTTGATTTATT+TGG - chr3_1:83791597-83791616 None:intergenic 25.0%
!! ATTTTATATCTGTTCATGAC+AGG + chr3_1:83791925-83791944 Msa0381550:CDS 25.0%
! TATATAATCATAAAGCCATC+TGG - chr3_1:83792188-83792207 None:intergenic 25.0%
!!! AGATGGCTTTATGATTATAT+AGG + chr3_1:83792187-83792206 Msa0381550:three_prime_UTR 25.0%
! ATGAAAAAAATGGAAGAAGT+GGG + chr3_1:83792222-83792241 Msa0381550:three_prime_UTR 25.0%
!! TTAGATTTTGCTTCAAATGA+TGG + chr3_1:83792301-83792320 Msa0381550:three_prime_UTR 25.0%
! GAAAATACAGTGATAGTGAT+AGG - chr3_1:83786855-83786874 None:intergenic 30.0%
ACTGTCAATGAATACCAATT+TGG + chr3_1:83787078-83787097 Msa0381550:intron 30.0%
AAGAACAAGAGAAAGAGAAA+GGG + chr3_1:83787349-83787368 Msa0381550:CDS 30.0%
CTGTCTATATTTGTGACTTT+AGG - chr3_1:83787382-83787401 None:intergenic 30.0%
CTAAAGTCACAAATATAGAC+AGG + chr3_1:83787380-83787399 Msa0381550:CDS 30.0%
! ATCCTACATTCATTGAGTTT+TGG + chr3_1:83787409-83787428 Msa0381550:intron 30.0%
AACCAAAACTCAATGAATGT+AGG - chr3_1:83787414-83787433 None:intergenic 30.0%
!!! TTTTAGGATGAACTATGCTT+TGG + chr3_1:83787448-83787467 Msa0381550:intron 30.0%
! TTTTACCCATCTCCAAAATT+TGG + chr3_1:83787522-83787541 Msa0381550:intron 30.0%
!! AGTTTCCAAATTTTGGAGAT+GGG - chr3_1:83787530-83787549 None:intergenic 30.0%
!! AAGTTTCCAAATTTTGGAGA+TGG - chr3_1:83787531-83787550 None:intergenic 30.0%
CTAGAGTATAGTAATTTAGC+TGG + chr3_1:83787565-83787584 Msa0381550:intron 30.0%
!! ATTTTTGGATTGGATGATGA+TGG + chr3_1:83787607-83787626 Msa0381550:intron 30.0%
!!! ATTTTTTTTATTGTGCGGGA+TGG + chr3_1:83787776-83787795 Msa0381550:intron 30.0%
! AAAAAGCATAAGACTAAGCT+TGG - chr3_1:83787934-83787953 None:intergenic 30.0%
!!! TCAATAAGGTTTTTAAGGCT+AGG - chr3_1:83787963-83787982 None:intergenic 30.0%
AGCCTTAAAAACCTTATTGA+TGG + chr3_1:83787963-83787982 Msa0381550:intron 30.0%
! AGCCATCAATAAGGTTTTTA+AGG - chr3_1:83787968-83787987 None:intergenic 30.0%
TAAGTATTTAAGGGTCTGTT+TGG + chr3_1:83788042-83788061 Msa0381550:intron 30.0%
AAGTATTTAAGGGTCTGTTT+GGG + chr3_1:83788043-83788062 Msa0381550:intron 30.0%
TAATTCCCATCATATATTCC+CGG - chr3_1:83788338-83788357 None:intergenic 30.0%
! ATGATGGGAATTATATTCCT+AGG + chr3_1:83788345-83788364 Msa0381550:intron 30.0%
TGGTTAACAATTTGAATTCC+TGG + chr3_1:83788388-83788407 Msa0381550:intron 30.0%
GGTTAACAATTTGAATTCCT+GGG + chr3_1:83788389-83788408 Msa0381550:intron 30.0%
AATTTACAAAAGAAGTTCCC+AGG - chr3_1:83788409-83788428 None:intergenic 30.0%
TCTTGAGAATGCTAAAAACA+TGG + chr3_1:83788428-83788447 Msa0381550:intron 30.0%
!!! CGGTTCCATTTTTTTATAGA+AGG + chr3_1:83788717-83788736 Msa0381550:intron 30.0%
AAGGAAGGAAAAAAAATTGG+AGG + chr3_1:83788736-83788755 Msa0381550:intron 30.0%
AGGAAGGAAAAAAAATTGGA+GGG + chr3_1:83788737-83788756 Msa0381550:intron 30.0%
!!! TTTTTTATTCCAGTGAGAGA+GGG - chr3_1:83788847-83788866 None:intergenic 30.0%
!!! ATTTTTTATTCCAGTGAGAG+AGG - chr3_1:83788848-83788867 None:intergenic 30.0%
TCTCTCACTGGAATAAAAAA+TGG + chr3_1:83788847-83788866 Msa0381550:intron 30.0%
AATAAAAAATGGCAGATCGT+GGG + chr3_1:83788858-83788877 Msa0381550:intron 30.0%
AGGAAACTTAAAATTTGCCT+GGG - chr3_1:83788912-83788931 None:intergenic 30.0%
AAGGAAACTTAAAATTTGCC+TGG - chr3_1:83788913-83788932 None:intergenic 30.0%
GAAAAACATATTCCAGTGTT+TGG - chr3_1:83788940-83788959 None:intergenic 30.0%
! AACACTGGAATATGTTTTTC+CGG + chr3_1:83788940-83788959 Msa0381550:intron 30.0%
AAGAATGCAAAACTCTTATG+GGG - chr3_1:83789009-83789028 None:intergenic 30.0%
GAAGAATGCAAAACTCTTAT+GGG - chr3_1:83789010-83789029 None:intergenic 30.0%
AGAAGAATGCAAAACTCTTA+TGG - chr3_1:83789011-83789030 None:intergenic 30.0%
CTAAATTTGAGTGCATCATA+GGG - chr3_1:83789317-83789336 None:intergenic 30.0%
ACTAAATTTGAGTGCATCAT+AGG - chr3_1:83789318-83789337 None:intergenic 30.0%
TCTTTAAGTAGACAGATACT+GGG - chr3_1:83789489-83789508 None:intergenic 30.0%
ATCTTTAAGTAGACAGATAC+TGG - chr3_1:83789490-83789509 None:intergenic 30.0%
TGGATGAAAGAAAAACAAGA+CGG - chr3_1:83789543-83789562 None:intergenic 30.0%
GTAAGAAATTAAGTGATGAG+AGG - chr3_1:83789615-83789634 None:intergenic 30.0%
! TTCAAATCATCTTCGTTTTC+TGG + chr3_1:83789807-83789826 Msa0381550:intron 30.0%
GAGGTTATATACTATTTGGA+CGG + chr3_1:83790124-83790143 Msa0381550:intron 30.0%
AGAAATTAAAAATGGCTGCA+TGG - chr3_1:83790188-83790207 None:intergenic 30.0%
GAATTAAAATCTGCAAGGTT+AGG - chr3_1:83790229-83790248 None:intergenic 30.0%
AGGCTTAGAAAATCGATTAT+GGG - chr3_1:83790410-83790429 None:intergenic 30.0%
! AGGCCAGTATTTAGTTTAAT+TGG + chr3_1:83790752-83790771 Msa0381550:intron 30.0%
! GGCCAGTATTTAGTTTAATT+GGG + chr3_1:83790753-83790772 Msa0381550:intron 30.0%
AAAGGAAAATGGAAGATTCT+AGG - chr3_1:83790886-83790905 None:intergenic 30.0%
!! AATTGAGGGTATCATATCAT+TGG + chr3_1:83790948-83790967 Msa0381550:intron 30.0%
ATACATTGTAAATTTGCACG+CGG + chr3_1:83791240-83791259 Msa0381550:intron 30.0%
TATTAATGCAGAAGCAATTC+AGG + chr3_1:83791745-83791764 Msa0381550:intron 30.0%
TGAGAAGAATCATCTTTCTT+TGG - chr3_1:83791798-83791817 None:intergenic 30.0%
AAGAAAGATGATTCTTCTCA+AGG + chr3_1:83791798-83791817 Msa0381550:CDS 30.0%
AAATAGGAACACATGAAAGA+AGG - chr3_1:83792122-83792141 None:intergenic 30.0%
TTCTTTCATGTGTTCCTATT+TGG + chr3_1:83792121-83792140 Msa0381550:three_prime_UTR 30.0%
AAAGAAACGAGGAAATGAAA+GGG - chr3_1:83792155-83792174 None:intergenic 30.0%
TAAAGAAACGAGGAAATGAA+AGG - chr3_1:83792156-83792175 None:intergenic 30.0%
TAGGGCAAACATGAAAAAAA+TGG + chr3_1:83792212-83792231 Msa0381550:three_prime_UTR 30.0%
CATGAAAAAAATGGAAGAAG+TGG + chr3_1:83792221-83792240 Msa0381550:three_prime_UTR 30.0%
TGAAAAAAATGGAAGAAGTG+GGG + chr3_1:83792223-83792242 Msa0381550:three_prime_UTR 30.0%
GAATGTATCGTTGTTATAGT+TGG + chr3_1:83792255-83792274 Msa0381550:three_prime_UTR 30.0%
AAAATCTAATGAAACACTCG+TGG - chr3_1:83792290-83792309 None:intergenic 30.0%
ATTCGAATTATTGGGAGACA+TGG + chr3_1:83786721-83786740 Msa0381550:five_prime_UTR 35.0%
!! ATGCTGATTCAGTGTTTGTA+AGG - chr3_1:83786781-83786800 None:intergenic 35.0%
! TCTTTTCTCAAGCTCTTCTA+AGG + chr3_1:83786817-83786836 Msa0381550:five_prime_UTR 35.0%
! CAACGTGCATTGATAAAACT+CGG + chr3_1:83786942-83786961 Msa0381550:intron 35.0%
GACATGATTGATGTTGAAGA+AGG + chr3_1:83787202-83787221 Msa0381550:CDS 35.0%
! GCCCAATTTGCAAAATGTTT+TGG + chr3_1:83787237-83787256 Msa0381550:CDS 35.0%
GAAGAACAAGAGAAAGAGAA+AGG + chr3_1:83787348-83787367 Msa0381550:CDS 35.0%
TCTACAGTACACACCTTAAA+GGG - chr3_1:83787474-83787493 None:intergenic 35.0%
ATCTACAGTACACACCTTAA+AGG - chr3_1:83787475-83787494 None:intergenic 35.0%
!! TTGGATGATGATGGAGAATT+TGG + chr3_1:83787616-83787635 Msa0381550:intron 35.0%
!! TGGATGATGATGGAGAATTT+GGG + chr3_1:83787617-83787636 Msa0381550:intron 35.0%
TGCCCCCATAATGTTTATTA+TGG - chr3_1:83787654-83787673 None:intergenic 35.0%
! GGCATTTGTTTGAAGTTTGA+GGG + chr3_1:83787670-83787689 Msa0381550:intron 35.0%
!! GAGAAGTATCTGCTATTCAT+TGG + chr3_1:83787896-83787915 Msa0381550:intron 35.0%
GACTGAATTCCACATTCTAT+TGG - chr3_1:83788016-83788035 None:intergenic 35.0%
TTAAAACAAACACCCCCTTA+GGG - chr3_1:83788283-83788302 None:intergenic 35.0%
ATTCCTTGGAATAACTTTCC+CGG + chr3_1:83788316-83788335 Msa0381550:intron 35.0%
AATTCCCATCATATATTCCC+GGG - chr3_1:83788337-83788356 None:intergenic 35.0%
GAGAATGCTAAAAACATGGT+TGG + chr3_1:83788432-83788451 Msa0381550:intron 35.0%
AATCAGCATTCATATGCAAG+CGG + chr3_1:83788697-83788716 Msa0381550:intron 35.0%
GGAAGGAAAAAAAATTGGAG+GGG + chr3_1:83788738-83788757 Msa0381550:intron 35.0%
! TTTTTATTCCAGTGAGAGAG+GGG - chr3_1:83788846-83788865 None:intergenic 35.0%
GAATAAAAAATGGCAGATCG+TGG + chr3_1:83788857-83788876 Msa0381550:intron 35.0%
TATTCCAGTGTTTGGTAAGA+AGG - chr3_1:83788932-83788951 None:intergenic 35.0%
TTTGTTTCCGAGACATGAAA+TGG - chr3_1:83788984-83789003 None:intergenic 35.0%
TGAATGTGAGCATAAAGTCA+CGG + chr3_1:83789089-83789108 Msa0381550:intron 35.0%
ATTTGATACAGGGACAAACA+AGG - chr3_1:83789115-83789134 None:intergenic 35.0%
ATATATGGTATACACTGCTG+CGG + chr3_1:83789241-83789260 Msa0381550:CDS 35.0%
TGTGAAATACCATTGTCACT+TGG + chr3_1:83789383-83789402 Msa0381550:intron 35.0%
! CATTTGAAGCAGTATTGCTT+AGG - chr3_1:83789435-83789454 None:intergenic 35.0%
!! TAAAGATGTTATTTCGGTGC+AGG + chr3_1:83789503-83789522 Msa0381550:intron 35.0%
TGAAAGAAAAACAAGACGGT+TGG - chr3_1:83789539-83789558 None:intergenic 35.0%
TTTCATCCAAAGCTGTTTGA+AGG + chr3_1:83789554-83789573 Msa0381550:intron 35.0%
AAGAAACAGAGAAAATGGGT+GGG - chr3_1:83789657-83789676 None:intergenic 35.0%
TAAGAAACAGAGAAAATGGG+TGG - chr3_1:83789658-83789677 None:intergenic 35.0%
ATCCTTCCCTTCTAAATACA+TGG + chr3_1:83789698-83789717 Msa0381550:intron 35.0%
TTCCATGTATTTAGAAGGGA+AGG - chr3_1:83789703-83789722 None:intergenic 35.0%
TTGACGGTATAACTGAGATA+TGG + chr3_1:83789762-83789781 Msa0381550:intron 35.0%
! CAAATTTTGTCCAGTTCCAA+TGG + chr3_1:83789906-83789925 Msa0381550:intron 35.0%
GAAAGTTGTCATAAGACCAT+TGG - chr3_1:83789925-83789944 None:intergenic 35.0%
CACAGTCCTATTAAAGAGAT+GGG - chr3_1:83790061-83790080 None:intergenic 35.0%
TCACAGTCCTATTAAAGAGA+TGG - chr3_1:83790062-83790081 None:intergenic 35.0%
ATAGGACTGTGACTATGATT+TGG + chr3_1:83790070-83790089 Msa0381550:intron 35.0%
ACTCTCACCTTTCCTTTAAA+AGG - chr3_1:83790103-83790122 None:intergenic 35.0%
GATAAGCATAACCAGATCAA+AGG - chr3_1:83790151-83790170 None:intergenic 35.0%
CACGCGTCAGAAATTAAAAA+TGG - chr3_1:83790196-83790215 None:intergenic 35.0%
! GTCTGGAATTAAAATCTGCA+AGG - chr3_1:83790234-83790253 None:intergenic 35.0%
GAAGTCACTATGTATGAACA+TGG - chr3_1:83790372-83790391 None:intergenic 35.0%
GCTTAGAAAATCGATTATGG+GGG - chr3_1:83790408-83790427 None:intergenic 35.0%
GGCTTAGAAAATCGATTATG+GGG - chr3_1:83790409-83790428 None:intergenic 35.0%
CAGGCTTAGAAAATCGATTA+TGG - chr3_1:83790411-83790430 None:intergenic 35.0%
! AATTTCAGCTCTGACATTGT+TGG - chr3_1:83790514-83790533 None:intergenic 35.0%
TTTACCGTCAAACCTAAATG+TGG + chr3_1:83790776-83790795 Msa0381550:intron 35.0%
TTACCGTCAAACCTAAATGT+GGG + chr3_1:83790777-83790796 Msa0381550:intron 35.0%
! TATCCCACATTTAGGTTTGA+CGG - chr3_1:83790783-83790802 None:intergenic 35.0%
AATCTTGGCACAAAGGAAAA+TGG - chr3_1:83790897-83790916 None:intergenic 35.0%
ATTCAGAAATCTTGGCACAA+AGG - chr3_1:83790904-83790923 None:intergenic 35.0%
!!! GTTTTAGGTTGATGCAATAC+AGG + chr3_1:83791265-83791284 Msa0381550:intron 35.0%
CATACTGTGGAACATCATAA+AGG + chr3_1:83791340-83791359 Msa0381550:CDS 35.0%
ATTATCTCTTTGTAGGCCTT+TGG - chr3_1:83791374-83791393 None:intergenic 35.0%
GAAAAGAGCAAAAGAGTTTG+AGG + chr3_1:83791394-83791413 Msa0381550:CDS 35.0%
!! TGGTTGGTGACAACTAAATT+CGG + chr3_1:83791484-83791503 Msa0381550:intron 35.0%
TTACTACAAACATACATGGC+TGG - chr3_1:83791541-83791560 None:intergenic 35.0%
AGATGATTCTTCTCAAGGTT+TGG + chr3_1:83791803-83791822 Msa0381550:CDS 35.0%
TTGCATTTCTGATGCAAGAA+AGG - chr3_1:83791874-83791893 None:intergenic 35.0%
AATGCAAAATCAACACGAAC+CGG + chr3_1:83791887-83791906 Msa0381550:CDS 35.0%
TATCTGTTCATGACAGGTTA+AGG + chr3_1:83791931-83791950 Msa0381550:CDS 35.0%
AGATCATCATCATAGGAAAC+AGG - chr3_1:83791960-83791979 None:intergenic 35.0%
! TCCTATGATGATGATCTACT+TGG + chr3_1:83791963-83791982 Msa0381550:CDS 35.0%
TCCAAGTAGATCATCATCAT+AGG - chr3_1:83791967-83791986 None:intergenic 35.0%
! TTTTTCTCCTTCTTAGACAG+AGG + chr3_1:83792052-83792071 Msa0381550:three_prime_UTR 35.0%
GCAAGGTAAATAAAGAAACG+AGG - chr3_1:83792166-83792185 None:intergenic 35.0%
! TCTTTATTTACCTTGCCAGA+TGG + chr3_1:83792170-83792189 Msa0381550:three_prime_UTR 35.0%
GAACTTGTCTCAAATGGATA+CGG + chr3_1:83792334-83792353 Msa0381550:three_prime_UTR 35.0%
AATTATTGGGAGACATGGAG+AGG + chr3_1:83786726-83786745 Msa0381550:five_prime_UTR 40.0%
CTGATTCAGTGTTTGTAAGG+CGG - chr3_1:83786778-83786797 None:intergenic 40.0%
GCATCAAGGGAAATCCAAAT+TGG - chr3_1:83787095-83787114 None:intergenic 40.0%
ATTTGGATTTCCCTTGATGC+AGG + chr3_1:83787095-83787114 Msa0381550:intron 40.0%
AAACACCTAACCTGCATCAA+GGG - chr3_1:83787108-83787127 None:intergenic 40.0%
AGGTGTTTGACTGTTTGTCA+TGG + chr3_1:83787120-83787139 Msa0381550:exon 40.0%
TGTTTGACTGTTTGTCATGG+AGG + chr3_1:83787123-83787142 Msa0381550:exon 40.0%
TGTTGAAGAAGGAGAGTTAG+TGG + chr3_1:83787213-83787232 Msa0381550:CDS 40.0%
!!! GTTTTGGAACAAAGTAGTGC+TGG + chr3_1:83787253-83787272 Msa0381550:CDS 40.0%
AAGAGAAAGAGAAAGGGTTC+AGG + chr3_1:83787355-83787374 Msa0381550:CDS 40.0%
AACTATGCTTTGGCCCTTTA+AGG + chr3_1:83787458-83787477 Msa0381550:intron 40.0%
!! GGATGATGATGGAGAATTTG+GGG + chr3_1:83787618-83787637 Msa0381550:intron 40.0%
!! GATGATGATGGAGAATTTGG+GGG + chr3_1:83787619-83787638 Msa0381550:intron 40.0%
! GGGCATTTGTTTGAAGTTTG+AGG + chr3_1:83787669-83787688 Msa0381550:intron 40.0%
GCAATTTCTGTGTGCAAGTA+TGG + chr3_1:83787874-83787893 Msa0381550:intron 40.0%
ATTCTATTGGATCACAGAGG+TGG - chr3_1:83788003-83788022 None:intergenic 40.0%
CACATTCTATTGGATCACAG+AGG - chr3_1:83788006-83788025 None:intergenic 40.0%
CTCTGTGATCCAATAGAATG+TGG + chr3_1:83788004-83788023 Msa0381550:intron 40.0%
TATTTAAGGGTCTGTTTGGG+AGG + chr3_1:83788046-83788065 Msa0381550:intron 40.0%
ATTTAAGGGTCTGTTTGGGA+GGG + chr3_1:83788047-83788066 Msa0381550:intron 40.0%
CTTAAAACAAACACCCCCTT+AGG - chr3_1:83788284-83788303 None:intergenic 40.0%
!!! CTAAGGGGGTGTTTGTTTTA+AGG + chr3_1:83788282-83788301 Msa0381550:intron 40.0%
TTCCTTGGAATAACTTTCCC+GGG + chr3_1:83788317-83788336 Msa0381550:intron 40.0%
ACTTTCCCGGGAATATATGA+TGG + chr3_1:83788329-83788348 Msa0381550:intron 40.0%
CTTTCCCGGGAATATATGAT+GGG + chr3_1:83788330-83788349 Msa0381550:intron 40.0%
CACCAGAAACAACATGCTAA+TGG + chr3_1:83788624-83788643 Msa0381550:intron 40.0%
!! TGCCATTAGCATGTTGTTTC+TGG - chr3_1:83788629-83788648 None:intergenic 40.0%
GTTGGAAAATCTCTATTCCC+AGG - chr3_1:83788824-83788843 None:intergenic 40.0%
TCGTGGGTCAAATAAATTCC+TGG + chr3_1:83788874-83788893 Msa0381550:intron 40.0%
CGTGGGTCAAATAAATTCCT+GGG + chr3_1:83788875-83788894 Msa0381550:intron 40.0%
CCTGGGAATAAAAAATACCC+AGG - chr3_1:83788895-83788914 None:intergenic 40.0%
!!! CCTGGGTATTTTTTATTCCC+AGG + chr3_1:83788892-83788911 Msa0381550:intron 40.0%
GTTTCCTTCTTACCAAACAC+TGG + chr3_1:83788925-83788944 Msa0381550:intron 40.0%
! AAATGGATTCCCAGGAATAG+AGG - chr3_1:83788967-83788986 None:intergenic 40.0%
TGGGAATCCATTTCATGTCT+CGG + chr3_1:83788974-83788993 Msa0381550:intron 40.0%
ATTTCACTTCGAGGTAGGTT+GGG - chr3_1:83789070-83789089 None:intergenic 40.0%
CATTCATTTCACTTCGAGGT+AGG - chr3_1:83789075-83789094 None:intergenic 40.0%
CTCACATTCATTTCACTTCG+AGG - chr3_1:83789079-83789098 None:intergenic 40.0%
GCTGCTGTACATTTGATACA+GGG - chr3_1:83789125-83789144 None:intergenic 40.0%
AGCTGCTGTACATTTGATAC+AGG - chr3_1:83789126-83789145 None:intergenic 40.0%
TTTCTCTTTCAGATGACGAC+AGG - chr3_1:83789216-83789235 None:intergenic 40.0%
TATATGGTATACACTGCTGC+GGG + chr3_1:83789242-83789261 Msa0381550:CDS 40.0%
! TACCATTGTCACTTGGAAGT+TGG + chr3_1:83789390-83789409 Msa0381550:intron 40.0%
TTCCAACTTCCAAGTGACAA+TGG - chr3_1:83789395-83789414 None:intergenic 40.0%
TTGAAGCAGTATTGCTTAGG+CGG - chr3_1:83789432-83789451 None:intergenic 40.0%
CGAAATCCTTCAAACAGCTT+TGG - chr3_1:83789563-83789582 None:intergenic 40.0%
GGGAAACAGACAAAAAGCAA+GGG - chr3_1:83789637-83789656 None:intergenic 40.0%
TGGGAAACAGACAAAAAGCA+AGG - chr3_1:83789638-83789657 None:intergenic 40.0%
TTGCCAAGATTGATCGTCAA+TGG + chr3_1:83789729-83789748 Msa0381550:intron 40.0%
! CAATGGTGGTGTTAGTTTGA+CGG + chr3_1:83789746-83789765 Msa0381550:intron 40.0%
TGTCATAAGACCATTGGAAC+TGG - chr3_1:83789919-83789938 None:intergenic 40.0%
!! TTTGGAGCCATGCCTTTTAA+AGG + chr3_1:83790088-83790107 Msa0381550:intron 40.0%
!! AGCCATGCCTTTTAAAGGAA+AGG + chr3_1:83790093-83790112 Msa0381550:intron 40.0%
! CACCTTTCCTTTAAAAGGCA+TGG - chr3_1:83790098-83790117 None:intergenic 40.0%
TAAAGGAAAGGTGAGAGTTG+AGG + chr3_1:83790105-83790124 Msa0381550:intron 40.0%
!! TGCTTGATCTTTGGTGTTCT+TGG + chr3_1:83790278-83790297 Msa0381550:intron 40.0%
AGTGAGACTATCCCACATTT+AGG - chr3_1:83790791-83790810 None:intergenic 40.0%
! TTGGGAAAGCCACTCAATTT+TGG + chr3_1:83790850-83790869 Msa0381550:intron 40.0%
AGCAGATGACCAAAATTGAG+TGG - chr3_1:83790862-83790881 None:intergenic 40.0%
TAAACTAGCATTGTCGCAGT+GGG + chr3_1:83790925-83790944 Msa0381550:intron 40.0%
TATGTGCCATATGCTTTGCA+TGG + chr3_1:83791083-83791102 Msa0381550:intron 40.0%
GTGGAACATCATAAAGGTTC+AGG + chr3_1:83791346-83791365 Msa0381550:CDS 40.0%
CATAAAGGTTCAGGAACCAA+AGG + chr3_1:83791355-83791374 Msa0381550:CDS 40.0%
!!! CTTTATATTTTTGGGTGGGG+AGG + chr3_1:83791429-83791448 Msa0381550:intron 40.0%
CATCTTGTCTCGTTGATACT+TGG + chr3_1:83791464-83791483 Msa0381550:intron 40.0%
TTGTCTCGTTGATACTTGGT+TGG + chr3_1:83791468-83791487 Msa0381550:intron 40.0%
!! GGTTGGTGACAACTAAATTC+GGG + chr3_1:83791485-83791504 Msa0381550:intron 40.0%
ATCACTGCCAGCAAATGATA+AGG - chr3_1:83791829-83791848 None:intergenic 40.0%
AGTCATGTTGCATCATTGAC+TGG - chr3_1:83791996-83792015 None:intergenic 40.0%
CACTAAACCTCTGTCTAAGA+AGG - chr3_1:83792062-83792081 None:intergenic 40.0%
AATCATAAAGCCATCTGGCA+AGG - chr3_1:83792183-83792202 None:intergenic 40.0%
! TGAAACACTCGTGGCAATTT+TGG - chr3_1:83792281-83792300 None:intergenic 40.0%
! AGTGCTGAACTTGTCTCAAA+TGG + chr3_1:83792328-83792347 Msa0381550:three_prime_UTR 40.0%
ATTCAGTGTTTGTAAGGCGG+TGG - chr3_1:83786775-83786794 None:intergenic 45.0%
GATTTCCCTTGATGCAGGTT+AGG + chr3_1:83787100-83787119 Msa0381550:intron 45.0%
CAAACACCTAACCTGCATCA+AGG - chr3_1:83787109-83787128 None:intergenic 45.0%
TGACTGTTTGTCATGGAGGA+AGG + chr3_1:83787127-83787146 Msa0381550:exon 45.0%
GACTGTTTGTCATGGAGGAA+GGG + chr3_1:83787128-83787147 Msa0381550:exon 45.0%
ACTGTTTGTCATGGAGGAAG+GGG + chr3_1:83787129-83787148 Msa0381550:exon 45.0%
TTTAAGGGTCTGTTTGGGAG+GGG + chr3_1:83788048-83788067 Msa0381550:intron 45.0%
!!! TTGGATGGAGGGTTTTGGAA+GGG - chr3_1:83788255-83788274 None:intergenic 45.0%
!!! TTTGGATGGAGGGTTTTGGA+AGG - chr3_1:83788256-83788275 None:intergenic 45.0%
! TGTGTTTGGATGGAGGGTTT+TGG - chr3_1:83788260-83788279 None:intergenic 45.0%
TTAGGGTGTGTTTGGATGGA+GGG - chr3_1:83788266-83788285 None:intergenic 45.0%
TCCATCCAAACACACCCTAA+GGG + chr3_1:83788266-83788285 Msa0381550:intron 45.0%
TTCCCGGGAAAGTTATTCCA+AGG - chr3_1:83788322-83788341 None:intergenic 45.0%
AGAACGTGTGGGGTAAAGTA+GGG + chr3_1:83788761-83788780 Msa0381550:intron 45.0%
!! TGGGGTAAAGTAGGGGTATT+AGG + chr3_1:83788769-83788788 Msa0381550:intron 45.0%
!! GGGGTAAAGTAGGGGTATTA+GGG + chr3_1:83788770-83788789 Msa0381550:intron 45.0%
!! GGGTAAAGTAGGGGTATTAG+GGG + chr3_1:83788771-83788790 Msa0381550:intron 45.0%
! GGGGATTTTTACTCTGAACG+TGG + chr3_1:83788790-83788809 Msa0381550:intron 45.0%
TGAACGTGGAGTTCATTCCT+GGG + chr3_1:83788804-83788823 Msa0381550:intron 45.0%
! TTTTTCCGGTCCTCTATTCC+TGG + chr3_1:83788954-83788973 Msa0381550:intron 45.0%
! TTTTCCGGTCCTCTATTCCT+GGG + chr3_1:83788955-83788974 Msa0381550:intron 45.0%
! GAGACATGAAATGGATTCCC+AGG - chr3_1:83788975-83788994 None:intergenic 45.0%
CATTTCACTTCGAGGTAGGT+TGG - chr3_1:83789071-83789090 None:intergenic 45.0%
TGAAGCAGTATTGCTTAGGC+GGG - chr3_1:83789431-83789450 None:intergenic 45.0%
CCACCATTGACGATCAATCT+TGG - chr3_1:83789735-83789754 None:intergenic 45.0%
CCAAGATTGATCGTCAATGG+TGG + chr3_1:83789732-83789751 Msa0381550:intron 45.0%
ATCACGTGACGTGTTTCAAG+TGG - chr3_1:83789848-83789867 None:intergenic 45.0%
ACTTGAAACACGTCACGTGA+TGG + chr3_1:83789847-83789866 Msa0381550:intron 45.0%
AAAACAACGAACACTCCAGC+AGG - chr3_1:83790003-83790022 None:intergenic 45.0%
ATTTGGACGGACCTTTGATC+TGG + chr3_1:83790137-83790156 Msa0381550:intron 45.0%
CTGCATGGTACTAGAAAGAG+TGG - chr3_1:83790173-83790192 None:intergenic 45.0%
GGAAGGAGCAAACTATTGTC+TGG - chr3_1:83790251-83790270 None:intergenic 45.0%
AGATCAAGCAGAGGATTGGA+AGG - chr3_1:83790268-83790287 None:intergenic 45.0%
CCAAAGATCAAGCAGAGGAT+TGG - chr3_1:83790272-83790291 None:intergenic 45.0%
CCAATCCTCTGCTTGATCTT+TGG + chr3_1:83790269-83790288 Msa0381550:intron 45.0%
GAACACCAAAGATCAAGCAG+AGG - chr3_1:83790277-83790296 None:intergenic 45.0%
! TTTTCTAAGCCTGTGTGCGT+TGG + chr3_1:83790418-83790437 Msa0381550:intron 45.0%
GGCAAAACTGGCTACACTAA+TGG - chr3_1:83790475-83790494 None:intergenic 45.0%
TACACTGAAGTGGGCAAAAC+TGG - chr3_1:83790487-83790506 None:intergenic 45.0%
GTTGGTTGCTACACTGAAGT+GGG - chr3_1:83790496-83790515 None:intergenic 45.0%
! TGTTGGTTGCTACACTGAAG+TGG - chr3_1:83790497-83790516 None:intergenic 45.0%
CTAAACTAGCATTGTCGCAG+TGG + chr3_1:83790924-83790943 Msa0381550:intron 45.0%
ATTGTCGCAGTGGGAATTGA+GGG + chr3_1:83790934-83790953 Msa0381550:intron 45.0%
ACGGTTCCATGCAAAGCATA+TGG - chr3_1:83791092-83791111 None:intergenic 45.0%
!! ATGGTGGACACTATGCATCA+CGG - chr3_1:83791111-83791130 None:intergenic 45.0%
CATTGTAAATTTGCACGCGG+AGG + chr3_1:83791243-83791262 Msa0381550:intron 45.0%
! AATTTGCACGCGGAGGTTTT+AGG + chr3_1:83791250-83791269 Msa0381550:intron 45.0%
GTTGATGCAATACAGGCTTG+TGG + chr3_1:83791272-83791291 Msa0381550:CDS 45.0%
! GTCTACCATCAGCAGTCTTT+TGG - chr3_1:83791301-83791320 None:intergenic 45.0%
CTGCTGATGGTAGACGATTT+CGG + chr3_1:83791306-83791325 Msa0381550:CDS 45.0%
ATGGTAGACGATTTCGGAGT+GGG + chr3_1:83791312-83791331 Msa0381550:CDS 45.0%
!! GGTTTGGCCTTATCATTTGC+TGG + chr3_1:83791819-83791838 Msa0381550:CDS 45.0%
! TCATTTGCTGGCAGTGATCA+AGG + chr3_1:83791831-83791850 Msa0381550:CDS 45.0%
AGGATGTAGTCTTCGCTTGA+GGG - chr3_1:83792102-83792121 None:intergenic 45.0%
AAGGATGTAGTCTTCGCTTG+AGG - chr3_1:83792103-83792122 None:intergenic 45.0%
AAAGGGTGGAGAGACCAAAT+AGG - chr3_1:83792138-83792157 None:intergenic 45.0%
GAAACGAGGAAATGAAAGGG+TGG - chr3_1:83792152-83792171 None:intergenic 45.0%
ATGGAAGAAGTGGGGTATAG+TGG + chr3_1:83792231-83792250 Msa0381550:three_prime_UTR 45.0%
!! TAATTAAAAAAAAAAAAGAA+CGG - chr3_1:83790650-83790669 None:intergenic 5.0%
!!! TGTTTGGGAGGGGTTTTGGA+GGG + chr3_1:83788058-83788077 Msa0381550:intron 50.0%
!!! ATGGAGGGTTTTGGAAGGGA+GGG - chr3_1:83788251-83788270 None:intergenic 50.0%
CTTAGGGTGTGTTTGGATGG+AGG - chr3_1:83788267-83788286 None:intergenic 50.0%
CTCCATCCAAACACACCCTA+AGG + chr3_1:83788265-83788284 Msa0381550:intron 50.0%
CCATCCAAACACACCCTAAG+GGG + chr3_1:83788267-83788286 Msa0381550:intron 50.0%
CATCCAAACACACCCTAAGG+GGG + chr3_1:83788268-83788287 Msa0381550:intron 50.0%
AAATTGGAGGGGAGAACGTG+TGG + chr3_1:83788749-83788768 Msa0381550:intron 50.0%
AATTGGAGGGGAGAACGTGT+GGG + chr3_1:83788750-83788769 Msa0381550:intron 50.0%
GAGAACGTGTGGGGTAAAGT+AGG + chr3_1:83788760-83788779 Msa0381550:intron 50.0%
GAACGTGTGGGGTAAAGTAG+GGG + chr3_1:83788762-83788781 Msa0381550:intron 50.0%
CTGAACGTGGAGTTCATTCC+TGG + chr3_1:83788803-83788822 Msa0381550:intron 50.0%
! TTTTCCAACCCCTCTCTCAC+TGG + chr3_1:83788835-83788854 Msa0381550:intron 50.0%
TATTCCAGTGAGAGAGGGGT+TGG - chr3_1:83788842-83788861 None:intergenic 50.0%
GATTCCCAGGAATAGAGGAC+CGG - chr3_1:83788962-83788981 None:intergenic 50.0%
! CTTAATTTGGCTTCCCTCCC+TGG + chr3_1:83789954-83789973 Msa0381550:intron 50.0%
AATGAGTGGCCATTGAGCCA+GGG - chr3_1:83789974-83789993 None:intergenic 50.0%
CCAGCAGGAGATTCAATGAG+TGG - chr3_1:83789988-83790007 None:intergenic 50.0%
CCACTCATTGAATCTCCTGC+TGG + chr3_1:83789985-83790004 Msa0381550:intron 50.0%
TCAGTAGTTTCCCCTTCACC+AGG - chr3_1:83790444-83790463 None:intergenic 50.0%
CATTGTCGCAGTGGGAATTG+AGG + chr3_1:83790933-83790952 Msa0381550:intron 50.0%
GATGCAATACAGGCTTGTGG+AGG + chr3_1:83791275-83791294 Msa0381550:CDS 50.0%
GATGGTAGACGATTTCGGAG+TGG + chr3_1:83791311-83791330 Msa0381550:CDS 50.0%
TGGTAGACGATTTCGGAGTG+GGG + chr3_1:83791313-83791332 Msa0381550:CDS 50.0%
!! TTTTGGGTGGGGAGGAACTT+AGG + chr3_1:83791437-83791456 Msa0381550:intron 50.0%
! GGTCTGTTTGGGAGGGGTTT+TGG + chr3_1:83788054-83788073 Msa0381550:intron 55.0%
!! CTGTTTGGGAGGGGTTTTGG+AGG + chr3_1:83788057-83788076 Msa0381550:intron 55.0%
!!! GTTTGGGAGGGGTTTTGGAG+GGG + chr3_1:83788059-83788078 Msa0381550:intron 55.0%
!!! GGTTTTGGAGGGGAGGACTT+TGG + chr3_1:83788069-83788088 Msa0381550:intron 55.0%
TTTGGAGGGGAGGACTTTGG+AGG + chr3_1:83788072-83788091 Msa0381550:intron 55.0%
TTGGAGGGGAGGACTTTGGA+GGG + chr3_1:83788073-83788092 Msa0381550:intron 55.0%
!!! TGGAGGGTTTTGGAAGGGAG+GGG - chr3_1:83788250-83788269 None:intergenic 55.0%
!!! GATGGAGGGTTTTGGAAGGG+AGG - chr3_1:83788252-83788271 None:intergenic 55.0%
CCCCTTAGGGTGTGTTTGGA+TGG - chr3_1:83788270-83788289 None:intergenic 55.0%
ACACCCCCTTAGGGTGTGTT+TGG - chr3_1:83788274-83788293 None:intergenic 55.0%
ATTGGAGGGGAGAACGTGTG+GGG + chr3_1:83788751-83788770 Msa0381550:intron 55.0%
! TACACTGCTGCGGGTTGTCT+TGG + chr3_1:83789251-83789270 Msa0381550:CDS 55.0%
CAATGAGTGGCCATTGAGCC+AGG - chr3_1:83789975-83789994 None:intergenic 55.0%
GGAGGCCAAAAGACTGCTGA+TGG + chr3_1:83791293-83791312 Msa0381550:CDS 55.0%
GGTAGACGATTTCGGAGTGG+GGG + chr3_1:83791314-83791333 Msa0381550:CDS 55.0%
!!! GGGTTTTGGAAGGGAGGGGA+GGG - chr3_1:83788246-83788265 None:intergenic 60.0%
!!! AGGGTTTTGGAAGGGAGGGG+AGG - chr3_1:83788247-83788266 None:intergenic 60.0%
AGTGGCCATTGAGCCAGGGA+GGG - chr3_1:83789970-83789989 None:intergenic 60.0%
! TAAGCCTGTGTGCGTTGGCC+TGG + chr3_1:83790423-83790442 Msa0381550:intron 60.0%
TTCACCAGGCCAACGCACAC+AGG - chr3_1:83790430-83790449 None:intergenic 60.0%
! TGTGTGCGTTGGCCTGGTGA+AGG + chr3_1:83790429-83790448 Msa0381550:intron 60.0%
! GTGTGCGTTGGCCTGGTGAA+GGG + chr3_1:83790430-83790449 Msa0381550:intron 60.0%
! TGTGCGTTGGCCTGGTGAAG+GGG + chr3_1:83790431-83790450 Msa0381550:intron 60.0%
AGACGATTTCGGAGTGGGGG+TGG + chr3_1:83791317-83791336 Msa0381550:CDS 60.0%
!!! TGGGAGGGGTTTTGGAGGGG+AGG + chr3_1:83788062-83788081 Msa0381550:intron 65.0%
GGCTTCCCTCCCTGGCTCAA+TGG + chr3_1:83789962-83789981 Msa0381550:intron 65.0%
GAGTGGCCATTGAGCCAGGG+AGG - chr3_1:83789971-83789990 None:intergenic 65.0%
GGAGTGGGGGTGGCATACTG+TGG + chr3_1:83791327-83791346 Msa0381550:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 83786717 83792388 83786717 ID=Msa0381550;Name=Msa0381550
chr3_1 mRNA 83786717 83792388 83786717 ID=Msa0381550-mRNA-1;Parent=Msa0381550;Name=Msa0381550-mRNA-1;_AED=0.25;_eAED=0.25;_QI=144|1|1|1|0.75|0.6|5|375|256
chr3_1 exon 83786717 83786838 83786717 ID=Msa0381550-mRNA-1:exon:21677;Parent=Msa0381550-mRNA-1
chr3_1 exon 83787117 83787401 83787117 ID=Msa0381550-mRNA-1:exon:21678;Parent=Msa0381550-mRNA-1
chr3_1 exon 83789199 83789304 83789199 ID=Msa0381550-mRNA-1:exon:21679;Parent=Msa0381550-mRNA-1
chr3_1 exon 83791272 83791415 83791272 ID=Msa0381550-mRNA-1:exon:21680;Parent=Msa0381550-mRNA-1
chr3_1 exon 83791756 83792388 83791756 ID=Msa0381550-mRNA-1:exon:21681;Parent=Msa0381550-mRNA-1
chr3_1 five_prime_UTR 83786717 83786838 83786717 ID=Msa0381550-mRNA-1:five_prime_utr;Parent=Msa0381550-mRNA-1
chr3_1 five_prime_UTR 83787117 83787138 83787117 ID=Msa0381550-mRNA-1:five_prime_utr;Parent=Msa0381550-mRNA-1
chr3_1 CDS 83787139 83787401 83787139 ID=Msa0381550-mRNA-1:cds;Parent=Msa0381550-mRNA-1
chr3_1 CDS 83789199 83789304 83789199 ID=Msa0381550-mRNA-1:cds;Parent=Msa0381550-mRNA-1
chr3_1 CDS 83791272 83791415 83791272 ID=Msa0381550-mRNA-1:cds;Parent=Msa0381550-mRNA-1
chr3_1 CDS 83791756 83792013 83791756 ID=Msa0381550-mRNA-1:cds;Parent=Msa0381550-mRNA-1
chr3_1 three_prime_UTR 83792014 83792388 83792014 ID=Msa0381550-mRNA-1:three_prime_utr;Parent=Msa0381550-mRNA-1
Gene Sequence

>Msa0381550

ATGGAGGAAGGGGATAACATTCTCGATGTTATATACGACGATGATGATTTAGATGATGATGTTGACATGATTGATGTTGAAGAAGGAGAGTTAGTGGAGCCCAATTTGCAAAATGTTTTGGAACAAAGTAGTGCTGGAGATATCAATGAAGCAAATCAAGAATCTTATAGTGAGAATTCAAAGTGCAGAGCTAGCAAGAAGAAGAAGAAGAAGAACAAGAGAAAGAGAAAGGGTTCAGGACCTAAAGTCACAAATATAGACAGATTTGTGTTAGATACCTGTCGTCATCTGAAAGAGAAAAAGTCATATATGGTATACACTGCTGCGGGTTGTCTTGGAATGTTTGCATTAAGTGATATCATCAAAGAGGTTGATGCAATACAGGCTTGTGGAGGCCAAAAGACTGCTGATGGTAGACGATTTCGGAGTGGGGGTGGCATACTGTGGAACATCATAAAGGTTCAGGAACCAAAGGCCTACAAAGAGATAATGAAAAGAGCAAAAGAGTTTGAGAAGCAATTCAGGCAGCCAAATGTTAAACAACTAAATATGCCAAAGAAAGATGATTCTTCTCAAGGTTTGGCCTTATCATTTGCTGGCAGTGATCAAGGAAATGTTTCAGACAGCGCCTTTCTTGCATCAGAAATGCAAAATCAACACGAACCGGTTACTTCTAAAGAAAATTTTATATCTGTTCATGACAGGTTAAGGATACCTGTTTCCTATGATGATGATCTACTTGGAGATAATCCAGTCAATGATGCAACATGA
Protein sequence

>Msa0381550

MEEGDNILDVIYDDDDLDDDVDMIDVEEGELVEPNLQNVLEQSSAGDINEANQESYSENSKCRASKKKKKKNKRKRKGSGPKVTNIDRFVLDTCRHLKEKKSYMVYTAAGCLGMFALSDIIKEVDAIQACGGQKTADGRRFRSGGGILWNIIKVQEPKAYKEIMKRAKEFEKQFRQPNVKQLNMPKKDDSSQGLALSFAGSDQGNVSDSAFLASEMQNQHEPVTSKENFISVHDRLRIPVSYDDDLLGDNPVNDAT*