Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122740 | XP_003590299.1 | 97.477 | 753 | 19 | 0 | 1 | 753 | 1 | 753 | 0.0 | 1514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122740 | G7I7Z4 | 97.477 | 753 | 19 | 0 | 1 | 753 | 1 | 753 | 0.0 | 1514 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051050 | Msa0122740 | 0.802916 | 4.469505e-49 | -8.615850e-47 |
| Msa0101240 | Msa0122740 | 0.806530 | 7.866232e-50 | -8.615850e-47 |
| Msa0122740 | Msa0162480 | 0.840176 | 1.017867e-57 | -8.615850e-47 |
| Msa0122740 | Msa0400420 | 0.840191 | 1.008662e-57 | -8.615850e-47 |
| Msa0122740 | Msa1360420 | 0.812789 | 3.552082e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122740 | MtrunA17_Chr1g0176961 | 97.477 | 753 | 19 | 0 | 1 | 753 | 1 | 753 | 0.0 | 1514 |
| Msa0122740 | MtrunA17_Chr7g0267631 | 57.861 | 776 | 270 | 18 | 1 | 753 | 1 | 742 | 0.0 | 805 |
| Msa0122740 | MtrunA17_Chr3g0137731 | 50.962 | 312 | 114 | 5 | 419 | 728 | 323 | 597 | 2.30e-93 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122740 | AT3G11760.1 | 58.223 | 754 | 230 | 18 | 1 | 729 | 1 | 694 | 0.0 | 793 |
| Msa0122740 | AT5G04860.1 | 46.144 | 804 | 329 | 21 | 1 | 749 | 1 | 755 | 0.0 | 609 |
| Msa0122740 | AT5G04860.2 | 47.685 | 648 | 260 | 17 | 137 | 749 | 1 | 604 | 6.99e-173 | 511 |
| Msa0122740 | AT2G10560.1 | 51.012 | 247 | 95 | 5 | 493 | 733 | 1 | 227 | 4.19e-76 | 247 |
| Msa0122740 | AT2G25460.2 | 43.396 | 318 | 124 | 4 | 419 | 734 | 282 | 545 | 3.89e-75 | 253 |
| Msa0122740 | AT2G25460.1 | 52.448 | 143 | 62 | 2 | 419 | 560 | 282 | 419 | 2.59e-33 | 133 |
Find 201 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATCAAACTGGGACTTTA+TGG | 0.102736 | 1_3:-49544850 | None:intergenic |
| AAGAATCGGCTTCAACTTTA+AGG | 0.138463 | 1_3:-49545184 | None:intergenic |
| AAGGGCTCTCCTTTAGATTT+AGG | 0.181325 | 1_3:-49543971 | None:intergenic |
| GTTCCTGAAAAGTCCTTTAT+AGG | 0.194840 | 1_3:+49544999 | Msa0122740:CDS |
| TGTTAATCTTTCTGCTAATA+AGG | 0.227838 | 1_3:+49542438 | Msa0122740:CDS |
| GTTACTTGTGGAGTCCTTTC+CGG | 0.255066 | 1_3:-49545114 | None:intergenic |
| ACCACAGGAATCTTGTTCTT+TGG | 0.269464 | 1_3:-49542613 | None:intergenic |
| TCTGCTTGTAATTCTCTAAT+AGG | 0.276013 | 1_3:-49545527 | None:intergenic |
| ACTTCGAATTTACGGGAAAT+TGG | 0.280810 | 1_3:-49542214 | None:intergenic |
| TCTGATGAATCTATTTCATT+TGG | 0.287396 | 1_3:+49544058 | Msa0122740:CDS |
| CCATGTCTTTCGATAACATT+TGG | 0.288111 | 1_3:+49545075 | Msa0122740:CDS |
| TCATCTGAGCTCAAAACTTT+TGG | 0.290865 | 1_3:+49545880 | Msa0122740:three_prime_UTR |
| CTGATGAATCTATTTCATTT+GGG | 0.291378 | 1_3:+49544059 | Msa0122740:CDS |
| CGAACATCGGTATCTGAGTT+TGG | 0.292405 | 1_3:+49544636 | Msa0122740:CDS |
| ACACATAATCGTACCGATTA+AGG | 0.298906 | 1_3:+49545684 | Msa0122740:exon |
| CTTCCCTCATCCATTCCTTC+TGG | 0.300375 | 1_3:-49545032 | None:intergenic |
| GCATTAGGTCGCGGTTGTTT+TGG | 0.300495 | 1_3:-49544827 | None:intergenic |
| TAACATAAAGTTGTATGAAT+TGG | 0.307061 | 1_3:+49545907 | Msa0122740:three_prime_UTR |
| AGCATTCCACTTACAATTCC+TGG | 0.310434 | 1_3:+49542700 | Msa0122740:CDS |
| CCACTATCAAAGCTGGTCTT+AGG | 0.321310 | 1_3:+49543519 | Msa0122740:CDS |
| GAAACAATAGAATCCTCTTT+TGG | 0.324321 | 1_3:-49543869 | None:intergenic |
| CTTTCTCTGACTCTCCTGAT+TGG | 0.326671 | 1_3:-49543487 | None:intergenic |
| TGATCTAGAAACAGTTGTTC+AGG | 0.341468 | 1_3:+49544953 | Msa0122740:CDS |
| ATCGTTCAGCTACGGGAAAC+TGG | 0.345865 | 1_3:+49543742 | Msa0122740:CDS |
| CATAAAGCTGAGGACGATTC+AGG | 0.349125 | 1_3:+49544606 | Msa0122740:CDS |
| CTCGAATTAAGCTATCAAAC+TGG | 0.359785 | 1_3:-49544860 | None:intergenic |
| GAACATCGGTATCTGAGTTT+GGG | 0.366778 | 1_3:+49544637 | Msa0122740:CDS |
| TACTGCATCATTGACACTCT+TGG | 0.376702 | 1_3:+49545206 | Msa0122740:CDS |
| GAATCAGAGTGCAAACAAAA+AGG | 0.381089 | 1_3:-49545955 | None:intergenic |
| TGACTCTCCTGATTGGTTCA+AGG | 0.386234 | 1_3:-49543480 | None:intergenic |
| GAAGGGTGATGACGAGGATT+GGG | 0.388790 | 1_3:+49543808 | Msa0122740:CDS |
| CAACTTTAAGGATGAAGAAA+TGG | 0.389682 | 1_3:-49545172 | None:intergenic |
| TTGGAGTCTGGTGCTGAGAC+TGG | 0.390075 | 1_3:+49545410 | Msa0122740:CDS |
| ACTGGGACTTTATGGGCATT+AGG | 0.391468 | 1_3:-49544842 | None:intergenic |
| CTATCAAACTGGGACTTTAT+GGG | 0.392417 | 1_3:-49544849 | None:intergenic |
| AAGATTCCTGTGGTTGGAAC+AGG | 0.393992 | 1_3:+49542622 | Msa0122740:CDS |
| GGAGTTTGACTTCGAATTTA+CGG | 0.394820 | 1_3:-49542222 | None:intergenic |
| GAGTTTGACTTCGAATTTAC+GGG | 0.395987 | 1_3:-49542221 | None:intergenic |
| TCTAGATCAAAATGTTTGTC+GGG | 0.400167 | 1_3:-49544939 | None:intergenic |
| CTTGAACTTTGCGCTACATA+AGG | 0.400579 | 1_3:-49543902 | None:intergenic |
| CTTTCTGCTAATAAGGAGAA+TGG | 0.401593 | 1_3:+49542445 | Msa0122740:CDS |
| TTGTTGCTGTAATTGCTGAT+TGG | 0.402500 | 1_3:+49544802 | Msa0122740:CDS |
| TTGAAGTTAAATTTAACAAA+AGG | 0.407650 | 1_3:+49545762 | Msa0122740:three_prime_UTR |
| CATGTCTTTCGATAACATTT+GGG | 0.410509 | 1_3:+49545076 | Msa0122740:CDS |
| TGGATGAAAGAAACCTATAA+AGG | 0.410749 | 1_3:-49545012 | None:intergenic |
| GAAAGAAGGAACCTTAACTA+TGG | 0.412299 | 1_3:-49542089 | None:intergenic |
| TGAAGGGTGATGACGAGGAT+TGG | 0.414690 | 1_3:+49543807 | Msa0122740:CDS |
| CAGCGCAGTGAACGTGCAGC+AGG | 0.419816 | 1_3:+49544759 | Msa0122740:CDS |
| CGTTGGAAGTTTGCCAAAAG+AGG | 0.420162 | 1_3:+49543856 | Msa0122740:CDS |
| CCTAAGACCAGCTTTGATAG+TGG | 0.423378 | 1_3:-49543519 | None:intergenic |
| CAACTTTGCGGTGGGCAGTT+GGG | 0.429654 | 1_3:+49544665 | Msa0122740:CDS |
| TTCTAGATCAAAATGTTTGT+CGG | 0.433819 | 1_3:-49544940 | None:intergenic |
| GCAGATATCAATCAGCTTAG+TGG | 0.435759 | 1_3:+49543394 | Msa0122740:intron |
| CATTCGCCGTTGAAATTCGT+TGG | 0.436958 | 1_3:+49542290 | Msa0122740:CDS |
| TATGTGAAAACCAGACATAT+AGG | 0.438554 | 1_3:+49544907 | Msa0122740:CDS |
| CGAATTTACGGGAAATTGGT+GGG | 0.441264 | 1_3:-49542210 | None:intergenic |
| AAAACCGCACTCTCCTTAAT+CGG | 0.442313 | 1_3:-49545697 | None:intergenic |
| TGGTTCAAGGGTGATGCAAC+AGG | 0.445371 | 1_3:-49543467 | None:intergenic |
| CAAGACGCAGCTTATTGCCT+TGG | 0.445383 | 1_3:+49543921 | Msa0122740:CDS |
| ATGTGAAAACCAGACATATA+GGG | 0.445666 | 1_3:+49544908 | Msa0122740:CDS |
| TACTGGTGAGGCTCATCCTA+AGG | 0.445670 | 1_3:+49542369 | Msa0122740:CDS |
| TCAAGAGAGTCAGAGTCAAA+AGG | 0.446923 | 1_3:-49543659 | None:intergenic |
| CCCTTGTTGAAGAAGGCATA+TGG | 0.450589 | 1_3:+49543989 | Msa0122740:CDS |
| AATGATAAGGAGTTGGAGTC+TGG | 0.455949 | 1_3:+49545398 | Msa0122740:CDS |
| GCATCACCCTTGAACCAATC+AGG | 0.458879 | 1_3:+49543473 | Msa0122740:CDS |
| TTCAGATCTCCTAAATCTAA+AGG | 0.460780 | 1_3:+49543962 | Msa0122740:CDS |
| TTAACTATGGATCTTACAAA+AGG | 0.461426 | 1_3:-49542076 | None:intergenic |
| GACTCTCCTGATTGGTTCAA+GGG | 0.464260 | 1_3:-49543479 | None:intergenic |
| CAAGAGAGTCAGAGTCAAAA+GGG | 0.467406 | 1_3:-49543658 | None:intergenic |
| CTTCCCTCTTCCTCACGGCT+CGG | 0.468647 | 1_3:-49543590 | None:intergenic |
| TGCGGAAATCGTTCAGCTAC+GGG | 0.469599 | 1_3:+49543735 | Msa0122740:CDS |
| AGGATGATTTGAACTGTTGA+TGG | 0.470966 | 1_3:+49545785 | Msa0122740:three_prime_UTR |
| GACGCAGCTTATTGCCTTGG+AGG | 0.472267 | 1_3:+49543924 | Msa0122740:CDS |
| CCATATGCCTTCTTCAACAA+GGG | 0.473088 | 1_3:-49543989 | None:intergenic |
| CTCCTCATCAAAACTCTCTC+CGG | 0.473764 | 1_3:+49542241 | Msa0122740:CDS |
| GGAAGAAGAAGATGAAGAGA+AGG | 0.478646 | 1_3:-49542114 | None:intergenic |
| GAAACCGAGCCGTGAGGAAG+AGG | 0.479734 | 1_3:+49543586 | Msa0122740:CDS |
| ACAACTTTGCGGTGGGCAGT+TGG | 0.479833 | 1_3:+49544664 | Msa0122740:CDS |
| ATGAAGAGAAGGAAGAAAGA+AGG | 0.483183 | 1_3:-49542103 | None:intergenic |
| GTCAATGATGCAGTAAGAAT+CGG | 0.484330 | 1_3:-49545198 | None:intergenic |
| TTTCTTTCATCCAGAAGGAA+TGG | 0.487919 | 1_3:+49545022 | Msa0122740:CDS |
| AAGAAGGCATATGGAGAAGA+AGG | 0.488958 | 1_3:+49543998 | Msa0122740:CDS |
| GTTTGGGGACGACAACTTTG+CGG | 0.490682 | 1_3:+49544653 | Msa0122740:CDS |
| TCTGACGATTGAGTGGCATC+TGG | 0.491709 | 1_3:-49545302 | None:intergenic |
| GGAATCGCTCCCTATATGTC+TGG | 0.491997 | 1_3:-49544917 | None:intergenic |
| ACCATGGTAACGCGTATTGT+TGG | 0.500204 | 1_3:-49542157 | None:intergenic |
| TTGTATCAACAAGGAAATCA+AGG | 0.502701 | 1_3:+49543564 | Msa0122740:CDS |
| CCTCACTTCCCTCTTCCTCA+CGG | 0.504065 | 1_3:-49543595 | None:intergenic |
| TCGAATTTACGGGAAATTGG+TGG | 0.505563 | 1_3:-49542211 | None:intergenic |
| AACTAAGGTTGTGTCTGTCT+AGG | 0.509674 | 1_3:+49545822 | Msa0122740:three_prime_UTR |
| AAGTTAAATTTAACAAAAGG+AGG | 0.512919 | 1_3:+49545765 | Msa0122740:three_prime_UTR |
| GCCGTTGAAATTCGTTGGAA+AGG | 0.514785 | 1_3:+49542295 | Msa0122740:CDS |
| GCAAATCAATGATAAGGAGT+TGG | 0.514949 | 1_3:+49545391 | Msa0122740:CDS |
| TGCAACGGTTTGTTGTTCAC+CGG | 0.516703 | 1_3:-49545336 | None:intergenic |
| AAACTGGCCTTTGCAAATGC+TGG | 0.517864 | 1_3:+49543758 | Msa0122740:CDS |
| TTCTCATTCAGAAGAGGTAA+AGG | 0.517877 | 1_3:+49543700 | Msa0122740:CDS |
| TTACAAGCAGATGTGAAGAA+AGG | 0.518971 | 1_3:+49545539 | Msa0122740:CDS |
| TTGCTCTTAGTTCGCTTCGT+CGG | 0.521079 | 1_3:+49542326 | Msa0122740:CDS |
| TGCATCTGTTGTTGATCAGA+AGG | 0.522342 | 1_3:+49542666 | Msa0122740:CDS |
| TGATGTAGGGTTTGAATCAG+AGG | 0.524447 | 1_3:+49542590 | Msa0122740:intron |
| GGTTCAGCAAATCAATGATA+AGG | 0.524830 | 1_3:+49545385 | Msa0122740:CDS |
| ATAGGTTTCTTTCATCCAGA+AGG | 0.525209 | 1_3:+49545017 | Msa0122740:CDS |
| AAACCGAGCCGTGAGGAAGA+GGG | 0.527016 | 1_3:+49543587 | Msa0122740:CDS |
| AGATGATGAAATGGCGTCCA+TGG | 0.533719 | 1_3:+49542185 | Msa0122740:CDS |
| TGATGAATCTATTTCATTTG+GGG | 0.533930 | 1_3:+49544060 | Msa0122740:CDS |
| CCGTGAGGAAGAGGGAAGTG+AGG | 0.535601 | 1_3:+49543595 | Msa0122740:CDS |
| AGGAGAGCCCTTGTTGAAGA+AGG | 0.536446 | 1_3:+49543982 | Msa0122740:CDS |
| ACCTTTCCAACGAATTTCAA+CGG | 0.536856 | 1_3:-49542296 | None:intergenic |
| GTCTTGTGATGTTGTTCCTG+TGG | 0.538631 | 1_3:+49545628 | Msa0122740:CDS |
| GTGAGGGAAATTACTCTGGC+AGG | 0.538852 | 1_3:+49543612 | Msa0122740:CDS |
| TTCACTGCGCTGATCAATTG+AGG | 0.539569 | 1_3:-49544748 | None:intergenic |
| TTTGATAGCTTAATTCGAGA+TGG | 0.542877 | 1_3:+49544864 | Msa0122740:CDS |
| CCGAGGTTCATCGTTACTTG+TGG | 0.543988 | 1_3:-49545126 | None:intergenic |
| AAGAACAAGATTCCTGTGGT+TGG | 0.544870 | 1_3:+49542616 | Msa0122740:CDS |
| TCGTCAGACGAAAACACAAC+CGG | 0.545059 | 1_3:+49545317 | Msa0122740:CDS |
| TCCATATGCCTTCTTCAACA+AGG | 0.550604 | 1_3:-49543990 | None:intergenic |
| TTCGAGATGGCTCATTAGAG+TGG | 0.552263 | 1_3:+49544877 | Msa0122740:CDS |
| ACTAAGGTTGTGTCTGTCTA+GGG | 0.554453 | 1_3:+49545823 | Msa0122740:three_prime_UTR |
| GCGCAGTGAACGTGCAGCAG+GGG | 0.555807 | 1_3:+49544761 | Msa0122740:CDS |
| GCATATATCTTGAAATTCGA+TGG | 0.555896 | 1_3:+49545257 | Msa0122740:CDS |
| TGGGATGAGATTAGTAATGC+CGG | 0.556246 | 1_3:+49545095 | Msa0122740:CDS |
| TACTCTGGCAGGAGTGAGGA+TGG | 0.557847 | 1_3:+49543623 | Msa0122740:CDS |
| TGGTTGTTAAGATGATGAAA+TGG | 0.558322 | 1_3:+49542176 | Msa0122740:CDS |
| GTGCGGAAATCGTTCAGCTA+CGG | 0.560018 | 1_3:+49543734 | Msa0122740:CDS |
| TCATCCAGAAGGAATGGATG+AGG | 0.560528 | 1_3:+49545028 | Msa0122740:CDS |
| GGAAGTGAGGGAAATTACTC+TGG | 0.560922 | 1_3:+49543608 | Msa0122740:CDS |
| GCTGAACGATTTCCGCACAC+TGG | 0.561277 | 1_3:-49543729 | None:intergenic |
| ACTTTATGGGCATTAGGTCG+CGG | 0.562038 | 1_3:-49544836 | None:intergenic |
| CTCAACTTTCTCTTCCTCCA+AGG | 0.562179 | 1_3:-49543938 | None:intergenic |
| GCTCAAGAGAATAGTGAGCT+TGG | 0.562928 | 1_3:+49543428 | Msa0122740:CDS |
| AGCGAACTAAGAGCAAGTTT+AGG | 0.563370 | 1_3:-49542319 | None:intergenic |
| GAATTTACGGGAAATTGGTG+GGG | 0.563517 | 1_3:-49542209 | None:intergenic |
| CTGGCCTTTGCAAATGCTGG+TGG | 0.563905 | 1_3:+49543761 | Msa0122740:CDS |
| GAACCACCAGGAATTGTAAG+TGG | 0.564705 | 1_3:-49542706 | None:intergenic |
| ACTGGTGAGGCTCATCCTAA+GGG | 0.565613 | 1_3:+49542370 | Msa0122740:CDS |
| CATACAGAGAGTGAAAGAGA+AGG | 0.566601 | 1_3:-49542739 | None:intergenic |
| ATTTGTAGTCTATGATGAAG+TGG | 0.567209 | 1_3:-49545578 | None:intergenic |
| AATTTACGGGAAATTGGTGG+GGG | 0.568449 | 1_3:-49542208 | None:intergenic |
| GAAGTTTCATGTGGCCATCA+CGG | 0.569157 | 1_3:-49544707 | None:intergenic |
| TCAACGGCGAATGTATTCTC+CGG | 0.570730 | 1_3:-49542280 | None:intergenic |
| GTGGTTGAGAAAAGAGACAA+AGG | 0.574718 | 1_3:-49542135 | None:intergenic |
| GAGGTTTCCACTATCAAAGC+TGG | 0.575099 | 1_3:+49543512 | Msa0122740:CDS |
| AAGGCATATGGAGAAGAAGG+TGG | 0.578876 | 1_3:+49544001 | Msa0122740:CDS |
| CGTGAGGAAGAGGGAAGTGA+GGG | 0.581230 | 1_3:+49543596 | Msa0122740:CDS |
| AAAGAAGTAATGAGCCGTGA+TGG | 0.583057 | 1_3:+49544693 | Msa0122740:CDS |
| ATACAGAGAGTGAAAGAGAA+GGG | 0.585093 | 1_3:-49542738 | None:intergenic |
| CTATTCGAGCATGAGAGTGA+AGG | 0.585649 | 1_3:+49543790 | Msa0122740:CDS |
| GGGGACGACAACTTTGCGGT+GGG | 0.588721 | 1_3:+49544657 | Msa0122740:CDS |
| GTAAATGAGAGAGTGAACTA+AGG | 0.588850 | 1_3:+49545807 | Msa0122740:three_prime_UTR |
| AATGAACCTGTTCCAACCAC+AGG | 0.591199 | 1_3:-49542628 | None:intergenic |
| GGGTCAACAGCAGAACCACC+AGG | 0.591552 | 1_3:-49542718 | None:intergenic |
| ACAGAAGCTTCTTCAGCCAC+AGG | 0.592677 | 1_3:-49545644 | None:intergenic |
| CGGTGGAATCGATCTCTCGC+CGG | 0.594401 | 1_3:+49542261 | Msa0122740:CDS |
| TGAGATTAGTAATGCCGGAA+AGG | 0.595760 | 1_3:+49545100 | Msa0122740:CDS |
| ATGTATTAGAGTACAATGAC+AGG | 0.595845 | 1_3:+49545360 | Msa0122740:CDS |
| ATGGTAACGCGTATTGTTGG+TGG | 0.596456 | 1_3:-49542154 | None:intergenic |
| AGCGCAGTGAACGTGCAGCA+GGG | 0.596611 | 1_3:+49544760 | Msa0122740:CDS |
| TCGAATTAAGCTATCAAACT+GGG | 0.597882 | 1_3:-49544859 | None:intergenic |
| ACCAACAATACGCGTTACCA+TGG | 0.598887 | 1_3:+49542156 | Msa0122740:exon |
| CTCATCAAAACTCTCTCCGG+TGG | 0.602962 | 1_3:+49542244 | Msa0122740:CDS |
| GTACTCTAATACATCTGCAA+CGG | 0.605082 | 1_3:-49545351 | None:intergenic |
| ATTAGAGTACAATGACAGGC+AGG | 0.605990 | 1_3:+49545364 | Msa0122740:CDS |
| TATTCGAGCATGAGAGTGAA+GGG | 0.606142 | 1_3:+49543791 | Msa0122740:CDS |
| TCAGTCGAAAAGTGAGCGTG+AGG | 0.606612 | 1_3:+49545436 | Msa0122740:CDS |
| TGGGGACGACAACTTTGCGG+TGG | 0.607170 | 1_3:+49544656 | Msa0122740:CDS |
| CAGCTTAGTGGAGCTAAGAG+TGG | 0.608548 | 1_3:+49543406 | Msa0122740:CDS |
| AACATCGGTATCTGAGTTTG+GGG | 0.609041 | 1_3:+49544638 | Msa0122740:CDS |
| ATTCATCAGAGCTAAGCTGC+CGG | 0.610097 | 1_3:-49544045 | None:intergenic |
| TTTCATCATCTTAACAACCA+TGG | 0.613076 | 1_3:-49542173 | None:intergenic |
| CTAGATCAAAATGTTTGTCG+GGG | 0.614137 | 1_3:-49544938 | None:intergenic |
| CTTGAAATTCGATGGCAACA+CGG | 0.615137 | 1_3:+49545265 | Msa0122740:CDS |
| AAATTACTCTGGCAGGAGTG+AGG | 0.615141 | 1_3:+49543619 | Msa0122740:CDS |
| TGACTGAGTTTGTATCAACA+AGG | 0.618765 | 1_3:+49543555 | Msa0122740:CDS |
| TCATTGACACTCTTGGAGAG+AGG | 0.619433 | 1_3:+49545213 | Msa0122740:CDS |
| ACAGTGAAAGCGATCTCCCA+AGG | 0.619674 | 1_3:-49542475 | None:intergenic |
| AGCTTCTGTTGCAGTAACTG+AGG | 0.622839 | 1_3:+49545658 | Msa0122740:CDS |
| CAGAAGGAATGGATGAGGGA+AGG | 0.626120 | 1_3:+49545033 | Msa0122740:CDS |
| CGGCGAGAGATCGATTCCAC+CGG | 0.626152 | 1_3:-49542260 | None:intergenic |
| TCATTCAGAAGAGGTAAAGG+AGG | 0.629440 | 1_3:+49543703 | Msa0122740:CDS |
| CATCCAGAAGGAATGGATGA+GGG | 0.630978 | 1_3:+49545029 | Msa0122740:CDS |
| GAGAGTGAAGGGTGATGACG+AGG | 0.633012 | 1_3:+49543802 | Msa0122740:CDS |
| AGGGGATTCTCATTCAGAAG+AGG | 0.637034 | 1_3:+49543694 | Msa0122740:CDS |
| CCAAATGTTATCGAAAGACA+TGG | 0.641206 | 1_3:-49545075 | None:intergenic |
| AAGTGAGCGTGAGGAAGACG+AGG | 0.642594 | 1_3:+49545445 | Msa0122740:CDS |
| AGTAATCACAAATCAGACGT+TGG | 0.645175 | 1_3:+49543839 | Msa0122740:CDS |
| TGATCCACCAGCATTTGCAA+AGG | 0.646546 | 1_3:-49543765 | None:intergenic |
| CAGAGGGAAAGAATCATGCA+AGG | 0.651300 | 1_3:+49545475 | Msa0122740:CDS |
| TAGTTCGCTTCGTCGGAACG+CGG | 0.657900 | 1_3:+49542333 | Msa0122740:CDS |
| TTTCAGGAACAACGGAAAGG+GGG | 0.661017 | 1_3:-49544986 | None:intergenic |
| CTTGGAGAGAGGCTTTACGA+AGG | 0.681723 | 1_3:+49545224 | Msa0122740:CDS |
| TTGCGCTACATAAGGCTCAG+AGG | 0.682948 | 1_3:-49543894 | None:intergenic |
| ATTCCACTTACAATTCCTGG+TGG | 0.685609 | 1_3:+49542703 | Msa0122740:CDS |
| TTCAGGTGCAAATCGAACAT+CGG | 0.687805 | 1_3:+49544623 | Msa0122740:CDS |
| CCACAAGTAACGATGAACCT+CGG | 0.694167 | 1_3:+49545126 | Msa0122740:CDS |
| CGTACCGATTAAGGAGAGTG+CGG | 0.697001 | 1_3:+49545693 | Msa0122740:three_prime_UTR |
| GCCAAAGAACAAGATTCCTG+TGG | 0.698542 | 1_3:+49542612 | Msa0122740:CDS |
| TAAAGGAGGATTCCAGTGTG+CGG | 0.701947 | 1_3:+49543717 | Msa0122740:CDS |
| ATGACAGTCACATAAAGCTG+AGG | 0.711509 | 1_3:+49544596 | Msa0122740:intron |
| AGGAGAGTCAGAGAAAGACG+AGG | 0.713897 | 1_3:+49543493 | Msa0122740:CDS |
| ATCAAGGAAACCGAGCCGTG+AGG | 0.718483 | 1_3:+49543580 | Msa0122740:CDS |
| CTTGTGTCTGAAGTTTCATG+TGG | 0.718633 | 1_3:-49544716 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATGAAATTAAAGAAAAA+GGG | - | chr1_3:49542522-49542541 | None:intergenic | 15.0% |
| !! | TACAATGAAATTAAAGAAAA+AGG | - | chr1_3:49542523-49542542 | None:intergenic | 15.0% |
| !! | AATAAGTCAAAAAGAAATTA+AGG | - | chr1_3:49542780-49542799 | None:intergenic | 15.0% |
| !! | AAAAATTGATGAGATAAAAA+AGG | - | chr1_3:49542808-49542827 | None:intergenic | 15.0% |
| !! | AATAGAATAGACTAAATAAA+TGG | + | chr1_3:49543023-49543042 | Msa0122740:intron | 15.0% |
| !!! | AAATGGATTTTATATACTTT+AGG | + | chr1_3:49543040-49543059 | Msa0122740:intron | 15.0% |
| !!! | AATGGATTTTATATACTTTA+GGG | + | chr1_3:49543041-49543060 | Msa0122740:intron | 15.0% |
| !! | TTGAAGTTAAATTTAACAAA+AGG | + | chr1_3:49545762-49545781 | Msa0122740:three_prime_UTR | 15.0% |
| !! | TAAATTCAAGAGAAAATTGA+TGG | - | chr1_3:49542898-49542917 | None:intergenic | 20.0% |
| !!! | ATAAGTATTGTATGTGAAAT+TGG | + | chr1_3:49542946-49542965 | Msa0122740:intron | 20.0% |
| !!! | ATGAATTTTCATATACTTCA+GGG | - | chr1_3:49542982-49543001 | None:intergenic | 20.0% |
| !!! | AATGAATTTTCATATACTTC+AGG | - | chr1_3:49542983-49543002 | None:intergenic | 20.0% |
| !! | TCTATTCTATTAAGATGTTT+AGG | - | chr1_3:49543014-49543033 | None:intergenic | 20.0% |
| !! | AAGAAGTTTCAAAAAAGATT+AGG | - | chr1_3:49544523-49544542 | None:intergenic | 20.0% |
| !!! | AATCTTTTTTGAAACTTCTT+TGG | + | chr1_3:49544523-49544542 | Msa0122740:intron | 20.0% |
| !! | AAGTTAAATTTAACAAAAGG+AGG | + | chr1_3:49545765-49545784 | Msa0122740:three_prime_UTR | 20.0% |
| !! | TAACATAAAGTTGTATGAAT+TGG | + | chr1_3:49545907-49545926 | Msa0122740:three_prime_UTR | 20.0% |
| !!! | GTGTTTTTAAAAGAAAATTG+AGG | + | chr1_3:49546127-49546146 | Msa0122740:intron | 20.0% |
| !!! | TTTTTAAAAGAAAATTGAGG+AGG | + | chr1_3:49546130-49546149 | Msa0122740:intron | 20.0% |
| ! | TTAACTATGGATCTTACAAA+AGG | - | chr1_3:49542079-49542098 | None:intergenic | 25.0% |
| !! | TTTTGTAAGATCCATAGTTA+AGG | + | chr1_3:49542078-49542097 | Msa0122740:five_prime_UTR | 25.0% |
| ! | TGTTAATCTTTCTGCTAATA+AGG | + | chr1_3:49542438-49542457 | Msa0122740:CDS | 25.0% |
| !!! | AAATTTGGGATTTTTGATGT+AGG | + | chr1_3:49542576-49542595 | Msa0122740:intron | 25.0% |
| !!! | AATTTGGGATTTTTGATGTA+GGG | + | chr1_3:49542577-49542596 | Msa0122740:intron | 25.0% |
| !! | CTCATCAATTTTTACTAGAA+TGG | + | chr1_3:49542815-49542834 | Msa0122740:intron | 25.0% |
| !!! | TTTCAATTGCAATTTGTTGT+TGG | + | chr1_3:49542867-49542886 | Msa0122740:intron | 25.0% |
| !!! | GCATTGACAAAAATTGATTT+TGG | + | chr1_3:49543111-49543130 | Msa0122740:intron | 25.0% |
| ! | TCTACTTGAAGTTTAGATAT+TGG | - | chr1_3:49543226-49543245 | None:intergenic | 25.0% |
| ! | TCTGATGAATCTATTTCATT+TGG | + | chr1_3:49544058-49544077 | Msa0122740:CDS | 25.0% |
| ! | CTGATGAATCTATTTCATTT+GGG | + | chr1_3:49544059-49544078 | Msa0122740:CDS | 25.0% |
| ! | TGATGAATCTATTTCATTTG+GGG | + | chr1_3:49544060-49544079 | Msa0122740:CDS | 25.0% |
| ! | TATCCTTAAAATTCATCTCA+AGG | + | chr1_3:49544153-49544172 | Msa0122740:intron | 25.0% |
| ! | ATTTAGATAAACTTGTCAAG+AGG | - | chr1_3:49544484-49544503 | None:intergenic | 25.0% |
| ! | AAGTTTCAAAAAAGATTAGG+AGG | - | chr1_3:49544520-49544539 | None:intergenic | 25.0% |
| ! | TGATAAGCTAATTAACAACA+GGG | - | chr1_3:49544556-49544575 | None:intergenic | 25.0% |
| ! | TTCTAGATCAAAATGTTTGT+CGG | - | chr1_3:49544943-49544962 | None:intergenic | 25.0% |
| TTTCATCATCTTAACAACCA+TGG | - | chr1_3:49542176-49542195 | None:intergenic | 30.0% | |
| TGGTTGTTAAGATGATGAAA+TGG | + | chr1_3:49542176-49542195 | Msa0122740:CDS | 30.0% | |
| TTAAGGACTAAGTGAATGTT+TGG | + | chr1_3:49543084-49543103 | Msa0122740:intron | 30.0% | |
| AGAATTGATTGTGACATGTT+TGG | - | chr1_3:49543288-49543307 | None:intergenic | 30.0% | |
| !! | TTCTACATCTCTAGAATCAA+TGG | + | chr1_3:49543304-49543323 | Msa0122740:intron | 30.0% |
| TTGTATCAACAAGGAAATCA+AGG | + | chr1_3:49543564-49543583 | Msa0122740:CDS | 30.0% | |
| ! | GAAACAATAGAATCCTCTTT+TGG | - | chr1_3:49543872-49543891 | None:intergenic | 30.0% |
| TTCAGATCTCCTAAATCTAA+AGG | + | chr1_3:49543962-49543981 | Msa0122740:CDS | 30.0% | |
| !!! | ATGATATTGATTTTGATCGC+CGG | + | chr1_3:49544026-49544045 | Msa0122740:CDS | 30.0% |
| GATGACGAAAAACAATGAAA+AGG | - | chr1_3:49544098-49544117 | None:intergenic | 30.0% | |
| TTTCGTCATCTACATGTTTA+TGG | + | chr1_3:49544108-49544127 | Msa0122740:intron | 30.0% | |
| TGTTTATGGCACAAGAAAAT+AGG | + | chr1_3:49544122-49544141 | Msa0122740:intron | 30.0% | |
| GTTTATGGCACAAGAAAATA+GGG | + | chr1_3:49544123-49544142 | Msa0122740:intron | 30.0% | |
| ! | TGACCTTGAGATGAATTTTA+AGG | - | chr1_3:49544159-49544178 | None:intergenic | 30.0% |
| ACTTAATGTATGAACTCTTC+CGG | - | chr1_3:49544295-49544314 | None:intergenic | 30.0% | |
| TATTTAGATCATTCCCATTG+AGG | - | chr1_3:49544445-49544464 | None:intergenic | 30.0% | |
| CTGATAAGCTAATTAACAAC+AGG | - | chr1_3:49544557-49544576 | None:intergenic | 30.0% | |
| TCGAATTAAGCTATCAAACT+GGG | - | chr1_3:49544862-49544881 | None:intergenic | 30.0% | |
| ! | TTTGATAGCTTAATTCGAGA+TGG | + | chr1_3:49544864-49544883 | Msa0122740:CDS | 30.0% |
| TATGTGAAAACCAGACATAT+AGG | + | chr1_3:49544907-49544926 | Msa0122740:CDS | 30.0% | |
| ATGTGAAAACCAGACATATA+GGG | + | chr1_3:49544908-49544927 | Msa0122740:CDS | 30.0% | |
| TCTAGATCAAAATGTTTGTC+GGG | - | chr1_3:49544942-49544961 | None:intergenic | 30.0% | |
| ! | AAACCTATAAAGGACTTTTC+AGG | - | chr1_3:49545005-49545024 | None:intergenic | 30.0% |
| TGGATGAAAGAAACCTATAA+AGG | - | chr1_3:49545015-49545034 | None:intergenic | 30.0% | |
| CATGTCTTTCGATAACATTT+GGG | + | chr1_3:49545076-49545095 | Msa0122740:CDS | 30.0% | |
| CAACTGATAATAAAAATCCG+AGG | - | chr1_3:49545146-49545165 | None:intergenic | 30.0% | |
| ! | CTCGGATTTTTATTATCAGT+TGG | + | chr1_3:49545144-49545163 | Msa0122740:CDS | 30.0% |
| ! | CAACTTTAAGGATGAAGAAA+TGG | - | chr1_3:49545175-49545194 | None:intergenic | 30.0% |
| GCATATATCTTGAAATTCGA+TGG | + | chr1_3:49545257-49545276 | Msa0122740:CDS | 30.0% | |
| ATGTATTAGAGTACAATGAC+AGG | + | chr1_3:49545360-49545379 | Msa0122740:CDS | 30.0% | |
| TCTGCTTGTAATTCTCTAAT+AGG | - | chr1_3:49545530-49545549 | None:intergenic | 30.0% | |
| ATTTGTAGTCTATGATGAAG+TGG | - | chr1_3:49545581-49545600 | None:intergenic | 30.0% | |
| GAAAGAAGGAACCTTAACTA+TGG | - | chr1_3:49542092-49542111 | None:intergenic | 35.0% | |
| ATGAAGAGAAGGAAGAAAGA+AGG | - | chr1_3:49542106-49542125 | None:intergenic | 35.0% | |
| ACTTCGAATTTACGGGAAAT+TGG | - | chr1_3:49542217-49542236 | None:intergenic | 35.0% | |
| ! | GAGTTTGACTTCGAATTTAC+GGG | - | chr1_3:49542224-49542243 | None:intergenic | 35.0% |
| ! | GGAGTTTGACTTCGAATTTA+CGG | - | chr1_3:49542225-49542244 | None:intergenic | 35.0% |
| ACCTTTCCAACGAATTTCAA+CGG | - | chr1_3:49542299-49542318 | None:intergenic | 35.0% | |
| ! | TGTGAGAAATTTTACTGGTG+AGG | + | chr1_3:49542357-49542376 | Msa0122740:CDS | 35.0% |
| !!! | ATGAAAACGATGTCGTTTTG+TGG | + | chr1_3:49542395-49542414 | Msa0122740:CDS | 35.0% |
| !!! | TGAAAACGATGTCGTTTTGT+GGG | + | chr1_3:49542396-49542415 | Msa0122740:CDS | 35.0% |
| CTTTCTGCTAATAAGGAGAA+TGG | + | chr1_3:49542445-49542464 | Msa0122740:CDS | 35.0% | |
| ATACAGAGAGTGAAAGAGAA+GGG | - | chr1_3:49542741-49542760 | None:intergenic | 35.0% | |
| ACTTCAAGTAGAATCAGTTC+TGG | + | chr1_3:49543234-49543253 | Msa0122740:intron | 35.0% | |
| !! | ACATCTCTAGAATCAATGGA+TGG | + | chr1_3:49543308-49543327 | Msa0122740:intron | 35.0% |
| TGACTGAGTTTGTATCAACA+AGG | + | chr1_3:49543555-49543574 | Msa0122740:CDS | 35.0% | |
| !! | TGACTCTCTTGATGATTTTG+AGG | + | chr1_3:49543670-49543689 | Msa0122740:CDS | 35.0% |
| !! | TCTCTTGATGATTTTGAGGA+AGG | + | chr1_3:49543674-49543693 | Msa0122740:CDS | 35.0% |
| !! | CTCTTGATGATTTTGAGGAA+GGG | + | chr1_3:49543675-49543694 | Msa0122740:CDS | 35.0% |
| !! | TCTTGATGATTTTGAGGAAG+GGG | + | chr1_3:49543676-49543695 | Msa0122740:CDS | 35.0% |
| TTCTCATTCAGAAGAGGTAA+AGG | + | chr1_3:49543700-49543719 | Msa0122740:CDS | 35.0% | |
| AGTAATCACAAATCAGACGT+TGG | + | chr1_3:49543839-49543858 | Msa0122740:CDS | 35.0% | |
| ATTGGACTCTAAACACGAAT+TGG | - | chr1_3:49544270-49544289 | None:intergenic | 35.0% | |
| TTAATGTATGAACTCTTCCG+GGG | - | chr1_3:49544293-49544312 | None:intergenic | 35.0% | |
| CTTAATGTATGAACTCTTCC+GGG | - | chr1_3:49544294-49544313 | None:intergenic | 35.0% | |
| GAATATGTGCATGAGTACAA+AGG | + | chr1_3:49544324-49544343 | Msa0122740:intron | 35.0% | |
| AGTACAAAGGCTTCTTAGAT+TGG | + | chr1_3:49544337-49544356 | Msa0122740:intron | 35.0% | |
| GTACAAAGGCTTCTTAGATT+GGG | + | chr1_3:49544338-49544357 | Msa0122740:intron | 35.0% | |
| AAGGGACATCTTGAACTTAA+CGG | - | chr1_3:49544399-49544418 | None:intergenic | 35.0% | |
| TGCTGAAAGAGAAGTAGAAA+GGG | - | chr1_3:49544417-49544436 | None:intergenic | 35.0% | |
| TTGCTGAAAGAGAAGTAGAA+AGG | - | chr1_3:49544418-49544437 | None:intergenic | 35.0% | |
| !! | AACTTGTCAAGAGGTATCAA+TGG | - | chr1_3:49544475-49544494 | None:intergenic | 35.0% |
| TTGTTGCTGTAATTGCTGAT+TGG | + | chr1_3:49544802-49544821 | Msa0122740:CDS | 35.0% | |
| CTATCAAACTGGGACTTTAT+GGG | - | chr1_3:49544852-49544871 | None:intergenic | 35.0% | |
| CTCGAATTAAGCTATCAAAC+TGG | - | chr1_3:49544863-49544882 | None:intergenic | 35.0% | |
| CTAGATCAAAATGTTTGTCG+GGG | - | chr1_3:49544941-49544960 | None:intergenic | 35.0% | |
| TGATCTAGAAACAGTTGTTC+AGG | + | chr1_3:49544953-49544972 | Msa0122740:CDS | 35.0% | |
| !! | AAAGGACTTTTCAGGAACAA+CGG | - | chr1_3:49544997-49545016 | None:intergenic | 35.0% |
| GTTCCTGAAAAGTCCTTTAT+AGG | + | chr1_3:49544999-49545018 | Msa0122740:CDS | 35.0% | |
| ATAGGTTTCTTTCATCCAGA+AGG | + | chr1_3:49545017-49545036 | Msa0122740:CDS | 35.0% | |
| TTTCTTTCATCCAGAAGGAA+TGG | + | chr1_3:49545022-49545041 | Msa0122740:CDS | 35.0% | |
| CCAAATGTTATCGAAAGACA+TGG | - | chr1_3:49545078-49545097 | None:intergenic | 35.0% | |
| CCATGTCTTTCGATAACATT+TGG | + | chr1_3:49545075-49545094 | Msa0122740:CDS | 35.0% | |
| ! | AAGAATCGGCTTCAACTTTA+AGG | - | chr1_3:49545187-49545206 | None:intergenic | 35.0% |
| GTCAATGATGCAGTAAGAAT+CGG | - | chr1_3:49545201-49545220 | None:intergenic | 35.0% | |
| GTACTCTAATACATCTGCAA+CGG | - | chr1_3:49545354-49545373 | None:intergenic | 35.0% | |
| GGTTCAGCAAATCAATGATA+AGG | + | chr1_3:49545385-49545404 | Msa0122740:CDS | 35.0% | |
| GCAAATCAATGATAAGGAGT+TGG | + | chr1_3:49545391-49545410 | Msa0122740:CDS | 35.0% | |
| TTACAAGCAGATGTGAAGAA+AGG | + | chr1_3:49545539-49545558 | Msa0122740:CDS | 35.0% | |
| !! | ACACATAATCGTACCGATTA+AGG | + | chr1_3:49545684-49545703 | Msa0122740:exon | 35.0% |
| AGGATGATTTGAACTGTTGA+TGG | + | chr1_3:49545785-49545804 | Msa0122740:three_prime_UTR | 35.0% | |
| GTAAATGAGAGAGTGAACTA+AGG | + | chr1_3:49545807-49545826 | Msa0122740:three_prime_UTR | 35.0% | |
| !!! | AGTTTTGAGCTCAGATGAAA+AGG | - | chr1_3:49545878-49545897 | None:intergenic | 35.0% |
| ! | TCATCTGAGCTCAAAACTTT+TGG | + | chr1_3:49545880-49545899 | Msa0122740:three_prime_UTR | 35.0% |
| GAATCAGAGTGCAAACAAAA+AGG | - | chr1_3:49545958-49545977 | None:intergenic | 35.0% | |
| ! | GTCATGAGCTGTATTTTTCT+GGG | - | chr1_3:49546013-49546032 | None:intergenic | 35.0% |
| ! | TGTCATGAGCTGTATTTTTC+TGG | - | chr1_3:49546014-49546033 | None:intergenic | 35.0% |
| AGAAAAATACAGCTCATGAC+AGG | + | chr1_3:49546013-49546032 | Msa0122740:three_prime_UTR | 35.0% | |
| GGAAGAAGAAGATGAAGAGA+AGG | - | chr1_3:49542117-49542136 | None:intergenic | 40.0% | |
| GTGGTTGAGAAAAGAGACAA+AGG | - | chr1_3:49542138-49542157 | None:intergenic | 40.0% | |
| AATTTACGGGAAATTGGTGG+GGG | - | chr1_3:49542211-49542230 | None:intergenic | 40.0% | |
| GAATTTACGGGAAATTGGTG+GGG | - | chr1_3:49542212-49542231 | None:intergenic | 40.0% | |
| CGAATTTACGGGAAATTGGT+GGG | - | chr1_3:49542213-49542232 | None:intergenic | 40.0% | |
| TCGAATTTACGGGAAATTGG+TGG | - | chr1_3:49542214-49542233 | None:intergenic | 40.0% | |
| AGCGAACTAAGAGCAAGTTT+AGG | - | chr1_3:49542322-49542341 | None:intergenic | 40.0% | |
| ! | GCGGTTGTGAGAAATTTTAC+TGG | + | chr1_3:49542352-49542371 | Msa0122740:CDS | 40.0% |
| ! | ACATCGTTTTCATCTCCCTT+AGG | - | chr1_3:49542388-49542407 | None:intergenic | 40.0% |
| ! | AGGAGAATGGTTTTCATCCT+TGG | + | chr1_3:49542458-49542477 | Msa0122740:CDS | 40.0% |
| ! | GGAGAATGGTTTTCATCCTT+GGG | + | chr1_3:49542459-49542478 | Msa0122740:CDS | 40.0% |
| TGATGTAGGGTTTGAATCAG+AGG | + | chr1_3:49542590-49542609 | Msa0122740:intron | 40.0% | |
| ACCACAGGAATCTTGTTCTT+TGG | - | chr1_3:49542616-49542635 | None:intergenic | 40.0% | |
| AAGAACAAGATTCCTGTGGT+TGG | + | chr1_3:49542616-49542635 | Msa0122740:CDS | 40.0% | |
| TGCATCTGTTGTTGATCAGA+AGG | + | chr1_3:49542666-49542685 | Msa0122740:CDS | 40.0% | |
| AGCATTCCACTTACAATTCC+TGG | + | chr1_3:49542700-49542719 | Msa0122740:CDS | 40.0% | |
| ATTCCACTTACAATTCCTGG+TGG | + | chr1_3:49542703-49542722 | Msa0122740:CDS | 40.0% | |
| CATACAGAGAGTGAAAGAGA+AGG | - | chr1_3:49542742-49542761 | None:intergenic | 40.0% | |
| TATCTGCACACAATCAAGAG+CGG | - | chr1_3:49543381-49543400 | None:intergenic | 40.0% | |
| GCAGATATCAATCAGCTTAG+TGG | + | chr1_3:49543394-49543413 | Msa0122740:intron | 40.0% | |
| CAAGAGAGTCAGAGTCAAAA+GGG | - | chr1_3:49543661-49543680 | None:intergenic | 40.0% | |
| TCAAGAGAGTCAGAGTCAAA+AGG | - | chr1_3:49543662-49543681 | None:intergenic | 40.0% | |
| TCATTCAGAAGAGGTAAAGG+AGG | + | chr1_3:49543703-49543722 | Msa0122740:CDS | 40.0% | |
| TATTCGAGCATGAGAGTGAA+GGG | + | chr1_3:49543791-49543810 | Msa0122740:CDS | 40.0% | |
| CTTGAACTTTGCGCTACATA+AGG | - | chr1_3:49543905-49543924 | None:intergenic | 40.0% | |
| AAGGGCTCTCCTTTAGATTT+AGG | - | chr1_3:49543974-49543993 | None:intergenic | 40.0% | |
| CCATATGCCTTCTTCAACAA+GGG | - | chr1_3:49543992-49544011 | None:intergenic | 40.0% | |
| TCCATATGCCTTCTTCAACA+AGG | - | chr1_3:49543993-49544012 | None:intergenic | 40.0% | |
| ! | AAGAAGGCATATGGAGAAGA+AGG | + | chr1_3:49543998-49544017 | Msa0122740:CDS | 40.0% |
| ACATCTTGAACTTAACGGGA+AGG | - | chr1_3:49544394-49544413 | None:intergenic | 40.0% | |
| AGGGACATCTTGAACTTAAC+GGG | - | chr1_3:49544398-49544417 | None:intergenic | 40.0% | |
| TTTCAGCAACTCTCCTCAAT+GGG | + | chr1_3:49544429-49544448 | Msa0122740:intron | 40.0% | |
| ATGACAGTCACATAAAGCTG+AGG | + | chr1_3:49544596-49544615 | Msa0122740:intron | 40.0% | |
| TTCAGGTGCAAATCGAACAT+CGG | + | chr1_3:49544623-49544642 | Msa0122740:CDS | 40.0% | |
| GAACATCGGTATCTGAGTTT+GGG | + | chr1_3:49544637-49544656 | Msa0122740:CDS | 40.0% | |
| AACATCGGTATCTGAGTTTG+GGG | + | chr1_3:49544638-49544657 | Msa0122740:CDS | 40.0% | |
| AAAGAAGTAATGAGCCGTGA+TGG | + | chr1_3:49544693-49544712 | Msa0122740:CDS | 40.0% | |
| ! | CTTGTGTCTGAAGTTTCATG+TGG | - | chr1_3:49544719-49544738 | None:intergenic | 40.0% |
| GCTATCAAACTGGGACTTTA+TGG | - | chr1_3:49544853-49544872 | None:intergenic | 40.0% | |
| !! | TTTTCAGGAACAACGGAAAG+GGG | - | chr1_3:49544990-49545009 | None:intergenic | 40.0% |
| !! | CTTTTCAGGAACAACGGAAA+GGG | - | chr1_3:49544991-49545010 | None:intergenic | 40.0% |
| !! | ACTTTTCAGGAACAACGGAA+AGG | - | chr1_3:49544992-49545011 | None:intergenic | 40.0% |
| !! | GGAAGGTTTGATTTTCTGCA+TGG | + | chr1_3:49545050-49545069 | Msa0122740:CDS | 40.0% |
| TGGGATGAGATTAGTAATGC+CGG | + | chr1_3:49545095-49545114 | Msa0122740:CDS | 40.0% | |
| TGAGATTAGTAATGCCGGAA+AGG | + | chr1_3:49545100-49545119 | Msa0122740:CDS | 40.0% | |
| TACTGCATCATTGACACTCT+TGG | + | chr1_3:49545206-49545225 | Msa0122740:CDS | 40.0% | |
| CTTGAAATTCGATGGCAACA+CGG | + | chr1_3:49545265-49545284 | Msa0122740:CDS | 40.0% | |
| ATTAGAGTACAATGACAGGC+AGG | + | chr1_3:49545364-49545383 | Msa0122740:CDS | 40.0% | |
| AATGATAAGGAGTTGGAGTC+TGG | + | chr1_3:49545398-49545417 | Msa0122740:CDS | 40.0% | |
| AAAACCGCACTCTCCTTAAT+CGG | - | chr1_3:49545700-49545719 | None:intergenic | 40.0% | |
| AACTAAGGTTGTGTCTGTCT+AGG | + | chr1_3:49545822-49545841 | Msa0122740:three_prime_UTR | 40.0% | |
| ACTAAGGTTGTGTCTGTCTA+GGG | + | chr1_3:49545823-49545842 | Msa0122740:three_prime_UTR | 40.0% | |
| ! | ATGAGCTGTATTTTTCTGGG+TGG | - | chr1_3:49546010-49546029 | None:intergenic | 40.0% |
| ! | ATGGTAACGCGTATTGTTGG+TGG | - | chr1_3:49542157-49542176 | None:intergenic | 45.0% |
| ACCAACAATACGCGTTACCA+TGG | + | chr1_3:49542156-49542175 | Msa0122740:exon | 45.0% | |
| ! | ACCATGGTAACGCGTATTGT+TGG | - | chr1_3:49542160-49542179 | None:intergenic | 45.0% |
| AGATGATGAAATGGCGTCCA+TGG | + | chr1_3:49542185-49542204 | Msa0122740:CDS | 45.0% | |
| CTCCTCATCAAAACTCTCTC+CGG | + | chr1_3:49542241-49542260 | Msa0122740:CDS | 45.0% | |
| TCAACGGCGAATGTATTCTC+CGG | - | chr1_3:49542283-49542302 | None:intergenic | 45.0% | |
| CATTCGCCGTTGAAATTCGT+TGG | + | chr1_3:49542290-49542309 | Msa0122740:CDS | 45.0% | |
| GCCGTTGAAATTCGTTGGAA+AGG | + | chr1_3:49542295-49542314 | Msa0122740:CDS | 45.0% | |
| TTGCTCTTAGTTCGCTTCGT+CGG | + | chr1_3:49542326-49542345 | Msa0122740:CDS | 45.0% | |
| GCCAAAGAACAAGATTCCTG+TGG | + | chr1_3:49542612-49542631 | Msa0122740:CDS | 45.0% | |
| AAGATTCCTGTGGTTGGAAC+AGG | + | chr1_3:49542622-49542641 | Msa0122740:CDS | 45.0% | |
| AATGAACCTGTTCCAACCAC+AGG | - | chr1_3:49542631-49542650 | None:intergenic | 45.0% | |
| GAACCACCAGGAATTGTAAG+TGG | - | chr1_3:49542709-49542728 | None:intergenic | 45.0% | |
| GCTCAAGAGAATAGTGAGCT+TGG | + | chr1_3:49543428-49543447 | Msa0122740:CDS | 45.0% | |
| ! | GACTCTCCTGATTGGTTCAA+GGG | - | chr1_3:49543482-49543501 | None:intergenic | 45.0% |
| ! | TGACTCTCCTGATTGGTTCA+AGG | - | chr1_3:49543483-49543502 | None:intergenic | 45.0% |
| CTTTCTCTGACTCTCCTGAT+TGG | - | chr1_3:49543490-49543509 | None:intergenic | 45.0% | |
| GAGGTTTCCACTATCAAAGC+TGG | + | chr1_3:49543512-49543531 | Msa0122740:CDS | 45.0% | |
| ! | CCTAAGACCAGCTTTGATAG+TGG | - | chr1_3:49543522-49543541 | None:intergenic | 45.0% |
| !! | CCACTATCAAAGCTGGTCTT+AGG | + | chr1_3:49543519-49543538 | Msa0122740:CDS | 45.0% |
| GGAAGTGAGGGAAATTACTC+TGG | + | chr1_3:49543608-49543627 | Msa0122740:CDS | 45.0% | |
| AAATTACTCTGGCAGGAGTG+AGG | + | chr1_3:49543619-49543638 | Msa0122740:CDS | 45.0% | |
| AGGGGATTCTCATTCAGAAG+AGG | + | chr1_3:49543694-49543713 | Msa0122740:CDS | 45.0% | |
| TAAAGGAGGATTCCAGTGTG+CGG | + | chr1_3:49543717-49543736 | Msa0122740:CDS | 45.0% | |
| !! | AAACTGGCCTTTGCAAATGC+TGG | + | chr1_3:49543758-49543777 | Msa0122740:CDS | 45.0% |
| TGATCCACCAGCATTTGCAA+AGG | - | chr1_3:49543768-49543787 | None:intergenic | 45.0% | |
| CTATTCGAGCATGAGAGTGA+AGG | + | chr1_3:49543790-49543809 | Msa0122740:CDS | 45.0% | |
| CGTTGGAAGTTTGCCAAAAG+AGG | + | chr1_3:49543856-49543875 | Msa0122740:CDS | 45.0% | |
| CTCAACTTTCTCTTCCTCCA+AGG | - | chr1_3:49543941-49543960 | None:intergenic | 45.0% | |
| ! | CCCTTGTTGAAGAAGGCATA+TGG | + | chr1_3:49543989-49544008 | Msa0122740:CDS | 45.0% |
| AAGGCATATGGAGAAGAAGG+TGG | + | chr1_3:49544001-49544020 | Msa0122740:CDS | 45.0% | |
| ATTCATCAGAGCTAAGCTGC+CGG | - | chr1_3:49544048-49544067 | None:intergenic | 45.0% | |
| GGCACAAGAAAATAGGGTGT+TGG | + | chr1_3:49544129-49544148 | Msa0122740:intron | 45.0% | |
| CTTTCAGCAACTCTCCTCAA+TGG | + | chr1_3:49544428-49544447 | Msa0122740:intron | 45.0% | |
| CATAAAGCTGAGGACGATTC+AGG | + | chr1_3:49544606-49544625 | Msa0122740:CDS | 45.0% | |
| CGAACATCGGTATCTGAGTT+TGG | + | chr1_3:49544636-49544655 | Msa0122740:CDS | 45.0% | |
| GAAGTTTCATGTGGCCATCA+CGG | - | chr1_3:49544710-49544729 | None:intergenic | 45.0% | |
| ! | TTCACTGCGCTGATCAATTG+AGG | - | chr1_3:49544751-49544770 | None:intergenic | 45.0% |
| ACTTTATGGGCATTAGGTCG+CGG | - | chr1_3:49544839-49544858 | None:intergenic | 45.0% | |
| ACTGGGACTTTATGGGCATT+AGG | - | chr1_3:49544845-49544864 | None:intergenic | 45.0% | |
| TTCGAGATGGCTCATTAGAG+TGG | + | chr1_3:49544877-49544896 | Msa0122740:CDS | 45.0% | |
| TTTCAGGAACAACGGAAAGG+GGG | - | chr1_3:49544989-49545008 | None:intergenic | 45.0% | |
| TCATCCAGAAGGAATGGATG+AGG | + | chr1_3:49545028-49545047 | Msa0122740:CDS | 45.0% | |
| CATCCAGAAGGAATGGATGA+GGG | + | chr1_3:49545029-49545048 | Msa0122740:CDS | 45.0% | |
| GTTACTTGTGGAGTCCTTTC+CGG | - | chr1_3:49545117-49545136 | None:intergenic | 45.0% | |
| CCACAAGTAACGATGAACCT+CGG | + | chr1_3:49545126-49545145 | Msa0122740:CDS | 45.0% | |
| TCATTGACACTCTTGGAGAG+AGG | + | chr1_3:49545213-49545232 | Msa0122740:CDS | 45.0% | |
| ! | GTTTTCGTCTGACGATTGAG+TGG | - | chr1_3:49545312-49545331 | None:intergenic | 45.0% |
| TCGTCAGACGAAAACACAAC+CGG | + | chr1_3:49545317-49545336 | Msa0122740:CDS | 45.0% | |
| !! | TGCAACGGTTTGTTGTTCAC+CGG | - | chr1_3:49545339-49545358 | None:intergenic | 45.0% |
| !! | AAGACGAGGTTTTGTGCAGA+GGG | + | chr1_3:49545459-49545478 | Msa0122740:CDS | 45.0% |
| CAGAGGGAAAGAATCATGCA+AGG | + | chr1_3:49545475-49545494 | Msa0122740:CDS | 45.0% | |
| GTCTTGTGATGTTGTTCCTG+TGG | + | chr1_3:49545628-49545647 | Msa0122740:CDS | 45.0% | |
| AGCTTCTGTTGCAGTAACTG+AGG | + | chr1_3:49545658-49545677 | Msa0122740:CDS | 45.0% | |
| !!! | TTTAAAAATTCAATTTTTAA+CGG | - | chr1_3:49542558-49542577 | None:intergenic | 5.0% |
| !!! | AAAATTGAATTTTTAAAATT+TGG | + | chr1_3:49542561-49542580 | Msa0122740:intron | 5.0% |
| !!! | AAATTGAATTTTTAAAATTT+GGG | + | chr1_3:49542562-49542581 | Msa0122740:intron | 5.0% |
| !!! | TTTTTATATTTATATACTTT+AGG | - | chr1_3:49542924-49542943 | None:intergenic | 5.0% |
| !! | AATTATATTTAAATACTTTA+AGG | + | chr1_3:49543067-49543086 | Msa0122740:intron | 5.0% |
| !! | CACCGGAGAGAGTTTTGATG+AGG | - | chr1_3:49542246-49542265 | None:intergenic | 50.0% |
| CTCATCAAAACTCTCTCCGG+TGG | + | chr1_3:49542244-49542263 | Msa0122740:CDS | 50.0% | |
| TACTGGTGAGGCTCATCCTA+AGG | + | chr1_3:49542369-49542388 | Msa0122740:CDS | 50.0% | |
| ACTGGTGAGGCTCATCCTAA+GGG | + | chr1_3:49542370-49542389 | Msa0122740:CDS | 50.0% | |
| ACAGTGAAAGCGATCTCCCA+AGG | - | chr1_3:49542478-49542497 | None:intergenic | 50.0% | |
| CAGCTTAGTGGAGCTAAGAG+TGG | + | chr1_3:49543406-49543425 | Msa0122740:CDS | 50.0% | |
| TGGTTCAAGGGTGATGCAAC+AGG | - | chr1_3:49543470-49543489 | None:intergenic | 50.0% | |
| GCATCACCCTTGAACCAATC+AGG | + | chr1_3:49543473-49543492 | Msa0122740:CDS | 50.0% | |
| AGGAGAGTCAGAGAAAGACG+AGG | + | chr1_3:49543493-49543512 | Msa0122740:CDS | 50.0% | |
| GTGAGGGAAATTACTCTGGC+AGG | + | chr1_3:49543612-49543631 | Msa0122740:CDS | 50.0% | |
| GTGCGGAAATCGTTCAGCTA+CGG | + | chr1_3:49543734-49543753 | Msa0122740:CDS | 50.0% | |
| TGCGGAAATCGTTCAGCTAC+GGG | + | chr1_3:49543735-49543754 | Msa0122740:CDS | 50.0% | |
| ATCGTTCAGCTACGGGAAAC+TGG | + | chr1_3:49543742-49543761 | Msa0122740:CDS | 50.0% | |
| ! | TGAAGGGTGATGACGAGGAT+TGG | + | chr1_3:49543807-49543826 | Msa0122740:CDS | 50.0% |
| ! | GAAGGGTGATGACGAGGATT+GGG | + | chr1_3:49543808-49543827 | Msa0122740:CDS | 50.0% |
| TTGCGCTACATAAGGCTCAG+AGG | - | chr1_3:49543897-49543916 | None:intergenic | 50.0% | |
| CAAGACGCAGCTTATTGCCT+TGG | + | chr1_3:49543921-49543940 | Msa0122740:CDS | 50.0% | |
| AGGAGAGCCCTTGTTGAAGA+AGG | + | chr1_3:49543982-49544001 | Msa0122740:CDS | 50.0% | |
| ! | CGTGTTTAGAGTCCAATCCC+CGG | + | chr1_3:49544273-49544292 | Msa0122740:intron | 50.0% |
| GTATGAACTCTTCCGGGGAT+TGG | - | chr1_3:49544288-49544307 | None:intergenic | 50.0% | |
| GTTTGGGGACGACAACTTTG+CGG | + | chr1_3:49544653-49544672 | Msa0122740:CDS | 50.0% | |
| ! | GCATTAGGTCGCGGTTGTTT+TGG | - | chr1_3:49544830-49544849 | None:intergenic | 50.0% |
| GGAATCGCTCCCTATATGTC+TGG | - | chr1_3:49544920-49544939 | None:intergenic | 50.0% | |
| ! | AACGGAAAGGGGGCGAATTT+TGG | - | chr1_3:49544979-49544998 | None:intergenic | 50.0% |
| CTTCCCTCATCCATTCCTTC+TGG | - | chr1_3:49545035-49545054 | None:intergenic | 50.0% | |
| CAGAAGGAATGGATGAGGGA+AGG | + | chr1_3:49545033-49545052 | Msa0122740:CDS | 50.0% | |
| CCGAGGTTCATCGTTACTTG+TGG | - | chr1_3:49545129-49545148 | None:intergenic | 50.0% | |
| CTTGGAGAGAGGCTTTACGA+AGG | + | chr1_3:49545224-49545243 | Msa0122740:CDS | 50.0% | |
| TCTGACGATTGAGTGGCATC+TGG | - | chr1_3:49545305-49545324 | None:intergenic | 50.0% | |
| TCAGTCGAAAAGTGAGCGTG+AGG | + | chr1_3:49545436-49545455 | Msa0122740:CDS | 50.0% | |
| !! | GAAGACGAGGTTTTGTGCAG+AGG | + | chr1_3:49545458-49545477 | Msa0122740:CDS | 50.0% |
| ACAGAAGCTTCTTCAGCCAC+AGG | - | chr1_3:49545647-49545666 | None:intergenic | 50.0% | |
| !! | CGTACCGATTAAGGAGAGTG+CGG | + | chr1_3:49545693-49545712 | Msa0122740:three_prime_UTR | 50.0% |
| TAGTTCGCTTCGTCGGAACG+CGG | + | chr1_3:49542333-49542352 | Msa0122740:CDS | 55.0% | |
| ATCAAGGAAACCGAGCCGTG+AGG | + | chr1_3:49543580-49543599 | Msa0122740:CDS | 55.0% | |
| AAACCGAGCCGTGAGGAAGA+GGG | + | chr1_3:49543587-49543606 | Msa0122740:CDS | 55.0% | |
| CCTCACTTCCCTCTTCCTCA+CGG | - | chr1_3:49543598-49543617 | None:intergenic | 55.0% | |
| CGTGAGGAAGAGGGAAGTGA+GGG | + | chr1_3:49543596-49543615 | Msa0122740:CDS | 55.0% | |
| TACTCTGGCAGGAGTGAGGA+TGG | + | chr1_3:49543623-49543642 | Msa0122740:CDS | 55.0% | |
| GCTGAACGATTTCCGCACAC+TGG | - | chr1_3:49543732-49543751 | None:intergenic | 55.0% | |
| ! | CTGGCCTTTGCAAATGCTGG+TGG | + | chr1_3:49543761-49543780 | Msa0122740:CDS | 55.0% |
| ! | GAGAGTGAAGGGTGATGACG+AGG | + | chr1_3:49543802-49543821 | Msa0122740:CDS | 55.0% |
| GACGCAGCTTATTGCCTTGG+AGG | + | chr1_3:49543924-49543943 | Msa0122740:CDS | 55.0% | |
| ACAACTTTGCGGTGGGCAGT+TGG | + | chr1_3:49544664-49544683 | Msa0122740:CDS | 55.0% | |
| CAACTTTGCGGTGGGCAGTT+GGG | + | chr1_3:49544665-49544684 | Msa0122740:CDS | 55.0% | |
| ! | TTGGAGTCTGGTGCTGAGAC+TGG | + | chr1_3:49545410-49545429 | Msa0122740:CDS | 55.0% |
| AAGTGAGCGTGAGGAAGACG+AGG | + | chr1_3:49545445-49545464 | Msa0122740:CDS | 55.0% | |
| ! | CGGCGAGAGATCGATTCCAC+CGG | - | chr1_3:49542263-49542282 | None:intergenic | 60.0% |
| CGGTGGAATCGATCTCTCGC+CGG | + | chr1_3:49542261-49542280 | Msa0122740:CDS | 60.0% | |
| GGGTCAACAGCAGAACCACC+AGG | - | chr1_3:49542721-49542740 | None:intergenic | 60.0% | |
| GAAACCGAGCCGTGAGGAAG+AGG | + | chr1_3:49543586-49543605 | Msa0122740:CDS | 60.0% | |
| CTTCCCTCTTCCTCACGGCT+CGG | - | chr1_3:49543593-49543612 | None:intergenic | 60.0% | |
| CCGTGAGGAAGAGGGAAGTG+AGG | + | chr1_3:49543595-49543614 | Msa0122740:CDS | 60.0% | |
| TGGGGACGACAACTTTGCGG+TGG | + | chr1_3:49544656-49544675 | Msa0122740:CDS | 60.0% | |
| GGGGACGACAACTTTGCGGT+GGG | + | chr1_3:49544657-49544676 | Msa0122740:CDS | 60.0% | |
| AGCGCAGTGAACGTGCAGCA+GGG | + | chr1_3:49544760-49544779 | Msa0122740:CDS | 60.0% | |
| CGGGAAATTGGTGGGGGCCA+TGG | - | chr1_3:49542205-49542224 | None:intergenic | 65.0% | |
| CAGCGCAGTGAACGTGCAGC+AGG | + | chr1_3:49544759-49544778 | Msa0122740:CDS | 65.0% | |
| GCGCAGTGAACGTGCAGCAG+GGG | + | chr1_3:49544761-49544780 | Msa0122740:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 49542049 | 49546213 | 49542049 | ID=Msa0122740;Name=Msa0122740 |
| chr1_3 | mRNA | 49542049 | 49546213 | 49542049 | ID=Msa0122740-mRNA-1;Parent=Msa0122740;Name=Msa0122740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=126|1|1|1|0.75|0.6|5|399|753 |
| chr1_3 | exon | 49542049 | 49542504 | 49542049 | ID=Msa0122740-mRNA-1:exon:15007;Parent=Msa0122740-mRNA-1 |
| chr1_3 | exon | 49542598 | 49542756 | 49542598 | ID=Msa0122740-mRNA-1:exon:15008;Parent=Msa0122740-mRNA-1 |
| chr1_3 | exon | 49543398 | 49544081 | 49543398 | ID=Msa0122740-mRNA-1:exon:15009;Parent=Msa0122740-mRNA-1 |
| chr1_3 | exon | 49544603 | 49546067 | 49544603 | ID=Msa0122740-mRNA-1:exon:15010;Parent=Msa0122740-mRNA-1 |
| chr1_3 | exon | 49546191 | 49546213 | 49546191 | ID=Msa0122740-mRNA-1:exon:15011;Parent=Msa0122740-mRNA-1 |
| chr1_3 | five_prime_UTR | 49542049 | 49542174 | 49542049 | ID=Msa0122740-mRNA-1:five_prime_utr;Parent=Msa0122740-mRNA-1 |
| chr1_3 | CDS | 49542175 | 49542504 | 49542175 | ID=Msa0122740-mRNA-1:cds;Parent=Msa0122740-mRNA-1 |
| chr1_3 | CDS | 49542598 | 49542756 | 49542598 | ID=Msa0122740-mRNA-1:cds;Parent=Msa0122740-mRNA-1 |
| chr1_3 | CDS | 49543398 | 49544081 | 49543398 | ID=Msa0122740-mRNA-1:cds;Parent=Msa0122740-mRNA-1 |
| chr1_3 | CDS | 49544603 | 49545691 | 49544603 | ID=Msa0122740-mRNA-1:cds;Parent=Msa0122740-mRNA-1 |
| chr1_3 | three_prime_UTR | 49545692 | 49546067 | 49545692 | ID=Msa0122740-mRNA-1:three_prime_utr;Parent=Msa0122740-mRNA-1 |
| chr1_3 | three_prime_UTR | 49546191 | 49546213 | 49546191 | ID=Msa0122740-mRNA-1:three_prime_utr;Parent=Msa0122740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
