Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101240 | XP_013466038.1 | 98.282 | 524 | 9 | 0 | 1 | 524 | 1 | 524 | 0.0 | 1060 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101240 | sp|Q9LLB0|AOS2_SOLLC | 66.216 | 518 | 162 | 5 | 5 | 522 | 6 | 510 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101240 | Q7X9B4 | 98.282 | 524 | 9 | 0 | 1 | 524 | 1 | 524 | 0.0 | 1060 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015670 | Msa0101240 | 0.810669 | 1.027399e-50 | -8.615850e-47 |
| Msa0051050 | Msa0101240 | 0.982251 | 1.293846e-154 | -8.615850e-47 |
| Msa0101240 | Msa0112270 | 0.813519 | 2.456539e-51 | -8.615850e-47 |
| Msa0101240 | Msa0122740 | 0.806530 | 7.866232e-50 | -8.615850e-47 |
| Msa0101240 | Msa0184410 | 0.831656 | 1.474964e-55 | -8.615850e-47 |
| Msa0101240 | Msa0203400 | 0.801468 | 8.878894e-49 | -8.615850e-47 |
| Msa0101240 | Msa0211200 | 0.862150 | 6.213763e-64 | -8.615850e-47 |
| Msa0101240 | Msa0234090 | 0.803084 | 4.126818e-49 | -8.615850e-47 |
| Msa0101240 | Msa0244890 | 0.838400 | 2.940723e-57 | -8.615850e-47 |
| Msa0101240 | Msa0244900 | 0.826376 | 2.806432e-54 | -8.615850e-47 |
| Msa0101240 | Msa0263230 | 0.803518 | 3.355918e-49 | -8.615850e-47 |
| Msa0101240 | Msa0283490 | 0.824658 | 7.165158e-54 | -8.615850e-47 |
| Msa0101240 | Msa0290680 | 0.823734 | 1.180782e-53 | -8.615850e-47 |
| Msa0101240 | Msa0323880 | 0.805010 | 1.640427e-49 | -8.615850e-47 |
| Msa0101240 | Msa0328730 | 0.839608 | 1.431507e-57 | -8.615850e-47 |
| Msa0101240 | Msa0344930 | 0.820405 | 6.977886e-53 | -8.615850e-47 |
| Msa0101240 | Msa0408340 | 0.841834 | 3.736683e-58 | -8.615850e-47 |
| Msa0101240 | Msa0432670 | 0.802029 | 6.808797e-49 | -8.615850e-47 |
| Msa0101240 | Msa0501410 | 0.815920 | 7.219356e-52 | -8.615850e-47 |
| Msa0101240 | Msa0527260 | 0.822456 | 2.346261e-53 | -8.615850e-47 |
| Msa0101240 | Msa0572750 | 0.843197 | 1.624549e-58 | -8.615850e-47 |
| Msa0101240 | Msa0590640 | 0.816050 | 6.751673e-52 | -8.615850e-47 |
| Msa0101240 | Msa0614380 | 0.855464 | 6.198097e-62 | -8.615850e-47 |
| Msa0101240 | Msa0615290 | 0.815064 | 1.119371e-51 | -8.615850e-47 |
| Msa0101240 | Msa0619050 | 0.800355 | 1.498335e-48 | -8.615850e-47 |
| Msa0101240 | Msa0626270 | 0.818779 | 1.640433e-52 | -8.615850e-47 |
| Msa0101240 | Msa0626460 | 0.815532 | 8.809779e-52 | -8.615850e-47 |
| Msa0101240 | Msa0630940 | 0.827000 | 1.991846e-54 | -8.615850e-47 |
| Msa0101240 | Msa0657660 | 0.818259 | 2.152224e-52 | -8.615850e-47 |
| Msa0101240 | Msa0664540 | 0.822609 | 2.161749e-53 | -8.615850e-47 |
| Msa0101240 | Msa0669180 | 0.806119 | 9.603378e-50 | -8.615850e-47 |
| Msa0101240 | Msa0678040 | 0.820595 | 6.311439e-53 | -8.615850e-47 |
| Msa0101240 | Msa0696850 | 0.822901 | 1.848369e-53 | -8.615850e-47 |
| Msa0101240 | Msa0696860 | 0.807060 | 6.077436e-50 | -8.615850e-47 |
| Msa0101240 | Msa0697590 | 0.810704 | 1.009835e-50 | -8.615850e-47 |
| Msa0101240 | Msa0713680 | 0.808673 | 2.759155e-50 | -8.615850e-47 |
| Msa0101240 | Msa0715420 | 0.844617 | 6.765619e-59 | -8.615850e-47 |
| Msa0101240 | Msa0718800 | 0.812870 | 3.410276e-51 | -8.615850e-47 |
| Msa0101240 | Msa0738110 | 0.803477 | 3.421106e-49 | -8.615850e-47 |
| Msa0101240 | Msa0751260 | 0.800681 | 1.286008e-48 | -8.615850e-47 |
| Msa0101240 | Msa0754770 | 0.841647 | 4.184547e-58 | -8.615850e-47 |
| Msa0101240 | Msa0758250 | 0.870719 | 1.179932e-66 | -8.615850e-47 |
| Msa0101240 | Msa0772710 | 0.802505 | 5.433948e-49 | -8.615850e-47 |
| Msa0101240 | Msa0786980 | 0.813663 | 2.283933e-51 | -8.615850e-47 |
| Msa0101240 | Msa0796630 | 0.840857 | 6.753023e-58 | -8.615850e-47 |
| Msa0101240 | Msa0798310 | 0.824705 | 6.983737e-54 | -8.615850e-47 |
| Msa0101240 | Msa0799620 | 0.856348 | 3.417726e-62 | -8.615850e-47 |
| Msa0101240 | Msa0827820 | 0.801800 | 7.590166e-49 | -8.615850e-47 |
| Msa0101240 | Msa0829650 | 0.803406 | 3.539297e-49 | -8.615850e-47 |
| Msa0101240 | Msa0833890 | 0.826374 | 2.809636e-54 | -8.615850e-47 |
| Msa0101240 | Msa0834180 | 0.831833 | 1.334394e-55 | -8.615850e-47 |
| Msa0101240 | Msa0837870 | 0.841637 | 4.211838e-58 | -8.615850e-47 |
| Msa0101240 | Msa0865970 | 0.880773 | 4.165662e-70 | -8.615850e-47 |
| Msa0101240 | Msa0866070 | 0.879393 | 1.292248e-69 | -8.615850e-47 |
| Msa0101240 | Msa0903170 | 0.804377 | 2.224832e-49 | -8.615850e-47 |
| Msa0101240 | Msa0972480 | 0.801091 | 1.060194e-48 | -8.615850e-47 |
| Msa0101240 | Msa1034700 | 0.843433 | 1.405708e-58 | -8.615850e-47 |
| Msa0101240 | Msa1043120 | 0.835490 | 1.628351e-56 | -8.615850e-47 |
| Msa0101240 | Msa1063370 | 0.827151 | 1.832451e-54 | -8.615850e-47 |
| Msa0101240 | Msa1074540 | 0.803240 | 3.830596e-49 | -8.615850e-47 |
| Msa0101240 | Msa1084640 | 0.818347 | 2.055541e-52 | -8.615850e-47 |
| Msa0101240 | Msa1108720 | 0.826749 | 2.287051e-54 | -8.615850e-47 |
| Msa0101240 | Msa1131050 | 0.804422 | 2.176466e-49 | -8.615850e-47 |
| Msa0101240 | Msa1152410 | 0.830288 | 3.195141e-55 | -8.615850e-47 |
| Msa0101240 | Msa1155900 | 0.802371 | 5.792144e-49 | -8.615850e-47 |
| Msa0101240 | Msa1156950 | 0.813315 | 2.723316e-51 | -8.615850e-47 |
| Msa0101240 | Msa1219900 | 0.807040 | 6.137409e-50 | -8.615850e-47 |
| Msa0101240 | Msa1220010 | 0.811442 | 6.986730e-51 | -8.615850e-47 |
| Msa0101240 | Msa1266490 | 0.824824 | 6.548075e-54 | -8.615850e-47 |
| Msa0101240 | Msa1268530 | 0.815816 | 7.615306e-52 | -8.615850e-47 |
| Msa0101240 | Msa1284990 | 0.810055 | 1.394359e-50 | -8.615850e-47 |
| Msa0101240 | Msa1341840 | 0.808632 | 2.815273e-50 | -8.615850e-47 |
| Msa0101240 | Msa1360420 | 0.988698 | 4.747439e-175 | -8.615850e-47 |
| Msa0101240 | Msa1366550 | 0.846221 | 2.488521e-59 | -8.615850e-47 |
| Msa0101240 | Msa1371590 | 0.818001 | 2.461973e-52 | -8.615850e-47 |
| Msa0101240 | Msa1376370 | 0.800445 | 1.436505e-48 | -8.615850e-47 |
| Msa0101240 | Msa1379700 | 0.824260 | 8.887911e-54 | -8.615850e-47 |
| Msa0101240 | Msa1388090 | 0.833472 | 5.228810e-56 | -8.615850e-47 |
| Msa0101240 | Msa1399260 | 0.880629 | 4.689796e-70 | -8.615850e-47 |
| Msa0101240 | Msa1400340 | 0.821402 | 4.114810e-53 | -8.615850e-47 |
| Msa0101240 | Msa1409490 | 0.828719 | 7.687302e-55 | -8.615850e-47 |
| Msa0101240 | Msa1416730 | 0.810456 | 1.142160e-50 | -8.615850e-47 |
| Msa0101240 | Msa1424630 | 0.825108 | 5.611404e-54 | -8.615850e-47 |
| Msa0101240 | Msa1425090 | 0.803186 | 3.930748e-49 | -8.615850e-47 |
| Msa0101240 | Msa1430550 | 0.812152 | 4.895909e-51 | -8.615850e-47 |
| Msa0101240 | Msa1439650 | 0.827547 | 1.473002e-54 | -8.615850e-47 |
| Msa0101240 | Msa1441270 | 0.811763 | 5.948865e-51 | -8.615850e-47 |
| Msa0101240 | Msa1446330 | 0.810576 | 1.076422e-50 | -8.615850e-47 |
| Msa0101240 | Msa1459100 | 0.801415 | 9.103249e-49 | -8.615850e-47 |
| Msa0101240 | Msa1461370 | 0.804242 | 2.373562e-49 | -8.615850e-47 |
| Msa0101240 | Msa1463030 | 0.860373 | 2.161088e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101240 | MtrunA17_Chr1g0154381 | 98.282 | 524 | 9 | 0 | 1 | 524 | 1 | 524 | 0.0 | 1060 |
| Msa0101240 | MtrunA17_Chr3g0141271 | 71.915 | 470 | 130 | 2 | 57 | 524 | 90 | 559 | 0.0 | 707 |
| Msa0101240 | MtrunA17_Chr4g0034141 | 48.125 | 480 | 243 | 4 | 48 | 523 | 2 | 479 | 2.07e-167 | 483 |
| Msa0101240 | MtrunA17_Chr1g0162571 | 50.418 | 478 | 229 | 6 | 52 | 523 | 8 | 483 | 4.85e-167 | 481 |
| Msa0101240 | MtrunA17_Chr2g0322321 | 39.787 | 470 | 269 | 5 | 56 | 522 | 21 | 479 | 6.56e-120 | 361 |
| Msa0101240 | MtrunA17_Chr1g0162591 | 48.750 | 240 | 121 | 2 | 283 | 522 | 4 | 241 | 2.71e-82 | 256 |
| Msa0101240 | MtrunA17_Chr1g0162581 | 45.418 | 251 | 131 | 4 | 40 | 285 | 2 | 251 | 4.81e-68 | 219 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101240 | AT5G42650.1 | 60.077 | 521 | 204 | 3 | 4 | 524 | 2 | 518 | 0.0 | 649 |
| Msa0101240 | AT4G15440.1 | 40.217 | 368 | 216 | 4 | 137 | 501 | 4 | 370 | 8.89e-93 | 288 |
Find 117 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTGATTTCAAGACTTT+TGG | 0.223131 | 1_3:-7815916 | Msa0101240:CDS |
| CATGACGACTACGTGATTTA+AGG | 0.223634 | 1_3:+7816825 | None:intergenic |
| TTCTTGAGCTGTTCATGTTT+TGG | 0.234640 | 1_3:+7816863 | None:intergenic |
| CCGATCCATTTCATCAAATT+AGG | 0.234831 | 1_3:+7816356 | None:intergenic |
| GAGAATCAACTTGCTGAAAA+TGG | 0.244874 | 1_3:-7816755 | Msa0101240:CDS |
| CCACCGGTTCCATTACAATT+TGG | 0.257621 | 1_3:-7816191 | Msa0101240:CDS |
| TACAATTTGGAAGAGCAAAA+AGG | 0.266309 | 1_3:-7816178 | Msa0101240:CDS |
| CGTAAAATCCCTGGTGACTA+TGG | 0.271642 | 1_3:-7817184 | Msa0101240:CDS |
| TCTGAAACTGAGGATCTTAT+AGG | 0.272458 | 1_3:+7817262 | None:intergenic |
| ACAGTTGGAGATTGAGATTC+TGG | 0.272740 | 1_3:+7815972 | None:intergenic |
| GTGATTGAAAATCATGAAAA+TGG | 0.293983 | 1_3:-7816149 | Msa0101240:CDS |
| AAACATGTGCTTTGGTCTAA+TGG | 0.336037 | 1_3:-7815996 | Msa0101240:CDS |
| CAAGTTGGAAATTCACCTTT+AGG | 0.336124 | 1_3:-7815855 | Msa0101240:CDS |
| AAGAAAGGTGAATTGTTGTT+AGG | 0.339578 | 1_3:-7816116 | Msa0101240:CDS |
| AAAAGAAATCATAAAGTCTT+TGG | 0.340810 | 1_3:+7816501 | None:intergenic |
| ATAGTCTAAACGGTCTTTGT+AGG | 0.357496 | 1_3:+7817144 | None:intergenic |
| GTTAGGTCCAGTTCTGAAAC+TGG | 0.360881 | 1_3:-7816597 | Msa0101240:CDS |
| CATAGAATCTTCCACAAACT+TGG | 0.369514 | 1_3:+7816568 | None:intergenic |
| AGTCCAAGTTCGGTGTCAAC+AGG | 0.376332 | 1_3:+7816659 | None:intergenic |
| TCTTTCTTAATGAGCCGAAA+TGG | 0.384153 | 1_3:+7816527 | None:intergenic |
| AACGTAGTTGTACTCCTTGA+TGG | 0.385691 | 1_3:-7817013 | Msa0101240:CDS |
| TTTGCTCTTCCAAATTGTAA+TGG | 0.388470 | 1_3:+7816182 | None:intergenic |
| TCAAGGAGTACAACTACGTT+AGG | 0.399517 | 1_3:+7817016 | None:intergenic |
| AACCCTGTTGACACCGAACT+TGG | 0.419339 | 1_3:-7816662 | Msa0101240:CDS |
| CTCGAGGAAGCAGAGCGTTT+AGG | 0.429148 | 1_3:-7816458 | Msa0101240:CDS |
| TTCTTGAATCGTGCTTTGTT+TGG | 0.430570 | 1_3:-7816689 | Msa0101240:CDS |
| TTAGGATCTTTAGTAGCAAA+AGG | 0.430684 | 1_3:+7816086 | None:intergenic |
| AATTGTTGAAACATGTGCTT+TGG | 0.436664 | 1_3:-7816004 | Msa0101240:CDS |
| TTCGATGCGTCGAAGAGGAC+GGG | 0.442058 | 1_3:+7816980 | None:intergenic |
| CTAATTTGATGAAATGGATC+GGG | 0.442169 | 1_3:-7816355 | Msa0101240:CDS |
| CTTTCTTAATGAGCCGAAAT+GGG | 0.448393 | 1_3:+7816528 | None:intergenic |
| GATAGATTTGTTGGTGATGA+AGG | 0.449657 | 1_3:-7816032 | Msa0101240:CDS |
| ATCGGAAGCTTGGTTGTTTG+TGG | 0.457864 | 1_3:+7817208 | None:intergenic |
| TGGACCGTCAAGTCCAAGTT+CGG | 0.457945 | 1_3:+7816649 | None:intergenic |
| TTTGTTGCAGATAGATTTGT+TGG | 0.462474 | 1_3:-7816041 | Msa0101240:CDS |
| GGTAGGCCCAGTTTCAGAAC+TGG | 0.462872 | 1_3:+7816590 | None:intergenic |
| GGTTGTAGAAATAGTCTAAA+CGG | 0.463350 | 1_3:+7817134 | None:intergenic |
| TGCTGGCGGGGAGATTACTA+TGG | 0.465831 | 1_3:-7816273 | Msa0101240:CDS |
| AAATTAGCGACGGAAATTAG+AGG | 0.465886 | 1_3:-7816308 | Msa0101240:CDS |
| GGAGATTACTATGGCGGCCA+TGG | 0.473614 | 1_3:-7816264 | Msa0101240:CDS |
| GACACCGAACTTGGACTTGA+CGG | 0.474937 | 1_3:-7816653 | Msa0101240:CDS |
| CTTCCAAATTGTAATGGAAC+CGG | 0.475194 | 1_3:+7816188 | None:intergenic |
| GCGTTTAGGTGTTTCAAAAG+AGG | 0.480545 | 1_3:-7816444 | Msa0101240:CDS |
| CCACCAGTGAGTTCTGTAGA+AGG | 0.484397 | 1_3:+7816920 | None:intergenic |
| TCTTTGTAGGGTTGGATGAA+AGG | 0.484515 | 1_3:+7817157 | None:intergenic |
| GATTCCTTTGAGATTCAAGT+TGG | 0.484812 | 1_3:-7815870 | Msa0101240:CDS |
| TCGTGATAAGGTGGTGGAAG+AGG | 0.486006 | 1_3:+7817306 | None:intergenic |
| CTAAACGGTCTTTGTAGGGT+TGG | 0.489158 | 1_3:+7817149 | None:intergenic |
| GGTGGAGGAACGTCGTGATA+AGG | 0.495151 | 1_3:+7817294 | None:intergenic |
| GAATCTCAATCTCCAACTGT+TGG | 0.495729 | 1_3:-7815969 | Msa0101240:CDS |
| CTGTAGCATGACTGAAACTC+AGG | 0.495943 | 1_3:+7816797 | None:intergenic |
| CTTTGTAGGGTTGGATGAAA+GGG | 0.497717 | 1_3:+7817158 | None:intergenic |
| CCTAATTTGATGAAATGGAT+CGG | 0.498399 | 1_3:-7816356 | Msa0101240:CDS |
| AATCTCAATCTCCAACTGTT+GGG | 0.502505 | 1_3:-7815968 | Msa0101240:CDS |
| AGAGGAGCAATTAGATCTGC+TGG | 0.504448 | 1_3:-7816290 | Msa0101240:CDS |
| TTCCGCACTAACGTTCCTCC+TGG | 0.506823 | 1_3:-7817058 | Msa0101240:CDS |
| GGTTGTTTGTGGTTGAGAGA+TGG | 0.510021 | 1_3:+7817219 | None:intergenic |
| CATTGTTTATTCCCAACAGT+TGG | 0.511671 | 1_3:+7815957 | None:intergenic |
| TTAGACTATTTCTACAACCA+AGG | 0.515498 | 1_3:-7817130 | Msa0101240:CDS |
| GAATATGCCGTTGATGAAAT+CGG | 0.515909 | 1_3:-7816240 | Msa0101240:CDS |
| TAGTCTAAACGGTCTTTGTA+GGG | 0.523147 | 1_3:+7817145 | None:intergenic |
| ACTGGGCCTACCCAAGTTTG+TGG | 0.523261 | 1_3:-7816579 | Msa0101240:CDS |
| GGATCTTATAGGTGGAAGAA+AGG | 0.524920 | 1_3:+7817273 | None:intergenic |
| GAGCAATTAGATCTGCTGGC+GGG | 0.527113 | 1_3:-7816286 | Msa0101240:CDS |
| TGAAGTATTCATCACGACCT+TGG | 0.527248 | 1_3:+7817113 | None:intergenic |
| GAGATGGAGACTTGGAAAGG+TGG | 0.530805 | 1_3:+7817235 | None:intergenic |
| GATAAAACCGATGTCTTCAC+AGG | 0.538925 | 1_3:-7816953 | Msa0101240:CDS |
| AGCAATTAGATCTGCTGGCG+GGG | 0.539011 | 1_3:-7816285 | Msa0101240:CDS |
| CAAGGAGTACAACTACGTTA+GGG | 0.540708 | 1_3:+7817017 | None:intergenic |
| AAAGGGATGCCATAGTCACC+AGG | 0.542937 | 1_3:+7817175 | None:intergenic |
| GTGGTTGAGAGATGGAGACT+TGG | 0.545394 | 1_3:+7817227 | None:intergenic |
| ATTTCCAACTTGAATCTCAA+AGG | 0.547715 | 1_3:+7815866 | None:intergenic |
| CGTGATAAGGTGGTGGAAGA+GGG | 0.548060 | 1_3:+7817307 | None:intergenic |
| CTTCCGATCCGTAAAATCCC+TGG | 0.555994 | 1_3:-7817193 | Msa0101240:CDS |
| TGTTTGAGGAGATTAGGAGA+AGG | 0.557408 | 1_3:+7817340 | None:intergenic |
| CTTCGATGCGTCGAAGAGGA+CGG | 0.557973 | 1_3:+7816979 | None:intergenic |
| TGATCTCTTTAGTGAGGTGA+GGG | 0.559767 | 1_3:+7815821 | None:intergenic |
| TCTTATAGGTGGAAGAAAGG+TGG | 0.561423 | 1_3:+7817276 | None:intergenic |
| AGGGTAATAGCAGGACCTAA+AGG | 0.563300 | 1_3:+7815840 | None:intergenic |
| TTGATCTCTTTAGTGAGGTG+AGG | 0.564316 | 1_3:+7815820 | None:intergenic |
| AGAAGGAGTTGAAAGAGTAG+AGG | 0.564504 | 1_3:+7817357 | None:intergenic |
| CATCAACGGCATATTCTCCA+TGG | 0.564805 | 1_3:+7816247 | None:intergenic |
| TAGTGCGGAAGATGGTTGAC+TGG | 0.567027 | 1_3:+7817071 | None:intergenic |
| CGATCTTCGATGCGTCGAAG+AGG | 0.569780 | 1_3:+7816975 | None:intergenic |
| AGGAACGTTAGTGCGGAAGA+TGG | 0.576272 | 1_3:+7817063 | None:intergenic |
| TTTAGGTGTTTCAAAAGAGG+AGG | 0.581669 | 1_3:-7816441 | Msa0101240:CDS |
| GGATCGGGCGCGGTGGAGTG+AGG | 0.582337 | 1_3:-7816340 | Msa0101240:CDS |
| ATAGAATCTTCCACAAACTT+GGG | 0.582357 | 1_3:+7816569 | None:intergenic |
| TCGATGCGTCGAAGAGGACG+GGG | 0.588579 | 1_3:+7816981 | None:intergenic |
| TATACCACCGATTTCATCAA+CGG | 0.592868 | 1_3:+7816233 | None:intergenic |
| CCAAATTGTAATGGAACCGG+TGG | 0.594525 | 1_3:+7816191 | None:intergenic |
| GTTGGGAATAAACAATGTGC+TGG | 0.598250 | 1_3:-7815951 | Msa0101240:CDS |
| GGAACGTCGTGATAAGGTGG+TGG | 0.600776 | 1_3:+7817300 | None:intergenic |
| TATAGGTGGAAGAAAGGTGG+AGG | 0.604481 | 1_3:+7817279 | None:intergenic |
| TTCCTCGGGATTTGCTCTCG+AGG | 0.607265 | 1_3:-7816474 | Msa0101240:CDS |
| AGTGAGGTGAGGGTAATAGC+AGG | 0.615642 | 1_3:+7815831 | None:intergenic |
| AATCTTCCACAAACTTGGGT+AGG | 0.620192 | 1_3:+7816573 | None:intergenic |
| GTCCAAGTTCGGTGTCAACA+GGG | 0.625604 | 1_3:+7816660 | None:intergenic |
| ATGAAATGGATCGGGCGCGG+TGG | 0.626352 | 1_3:-7816347 | Msa0101240:CDS |
| TTAGGTCCAGTTCTGAAACT+GGG | 0.627548 | 1_3:-7816596 | Msa0101240:CDS |
| GGAGGAACGTCGTGATAAGG+TGG | 0.627902 | 1_3:+7817297 | None:intergenic |
| GACCAGGAGGAACGTTAGTG+CGG | 0.628753 | 1_3:+7817056 | None:intergenic |
| GAAACTGAGGATCTTATAGG+TGG | 0.630333 | 1_3:+7817265 | None:intergenic |
| GAAGCTTGATCTCTTTAGTG+AGG | 0.631938 | 1_3:+7815815 | None:intergenic |
| TTGATGAAATGGATCGGGCG+CGG | 0.633244 | 1_3:-7816350 | Msa0101240:CDS |
| ACACCTTCTACAGAACTCAC+TGG | 0.635223 | 1_3:-7816923 | Msa0101240:CDS |
| GTTGCATACAAAATTAGCGA+CGG | 0.661214 | 1_3:-7816318 | Msa0101240:CDS |
| TGGCGGGGAGATTACTATGG+CGG | 0.671730 | 1_3:-7816270 | Msa0101240:CDS |
| TGAGAGATGGAGACTTGGAA+AGG | 0.672847 | 1_3:+7817232 | None:intergenic |
| GGAGCAATTAGATCTGCTGG+CGG | 0.676095 | 1_3:-7816287 | Msa0101240:CDS |
| CAAAAGTCTTGAAATCAATG+TGG | 0.688379 | 1_3:+7815917 | None:intergenic |
| AAGGGATGCCATAGTCACCA+GGG | 0.700881 | 1_3:+7817176 | None:intergenic |
| TTCCTCGAGAGCAAATCCCG+AGG | 0.708927 | 1_3:+7816472 | None:intergenic |
| CCTTCTACAGAACTCACTGG+TGG | 0.709735 | 1_3:-7816920 | Msa0101240:CDS |
| TATGCCGTTGATGAAATCGG+TGG | 0.719714 | 1_3:-7816237 | Msa0101240:CDS |
| GTATGTACCTGTGAAGACAT+CGG | 0.723042 | 1_3:+7816946 | None:intergenic |
| TGAGCTATGAAAGGACCAGG+AGG | 0.748813 | 1_3:+7817043 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAATCATAAAGTCTT+TGG | + | chr1_3:7816678-7816697 | None:intergenic | 20.0% |
| !!! | TTTTTCCTAATTTGATGAAA+TGG | - | chr1_3:7816815-7816834 | Msa0101240:CDS | 20.0% |
| !!! | AAATCATGAAAATGGTTTTT+TGG | - | chr1_3:7817035-7817054 | Msa0101240:CDS | 20.0% |
| !! | AAAAGAAATCATAAAGTCTT+TGG | + | chr1_3:7816678-7816697 | None:intergenic | 20.0% |
| !!! | TTTTTCCTAATTTGATGAAA+TGG | - | chr1_3:7816815-7816834 | Msa0101240:CDS | 20.0% |
| !!! | AAATCATGAAAATGGTTTTT+TGG | - | chr1_3:7817035-7817054 | Msa0101240:CDS | 20.0% |
| !!! | AAATGGGTTTTATTTCAGTT+AGG | - | chr1_3:7816562-7816581 | Msa0101240:CDS | 25.0% |
| ! | GTGATTGAAAATCATGAAAA+TGG | - | chr1_3:7817027-7817046 | Msa0101240:CDS | 25.0% |
| !!! | AATGGTTTTTTGGTTAAGAA+AGG | - | chr1_3:7817045-7817064 | Msa0101240:CDS | 25.0% |
| !!! | AAATGGGTTTTATTTCAGTT+AGG | - | chr1_3:7816562-7816581 | Msa0101240:CDS | 25.0% |
| ! | GTGATTGAAAATCATGAAAA+TGG | - | chr1_3:7817027-7817046 | Msa0101240:CDS | 25.0% |
| !!! | AATGGTTTTTTGGTTAAGAA+AGG | - | chr1_3:7817045-7817064 | Msa0101240:CDS | 25.0% |
| GGTTGTAGAAATAGTCTAAA+CGG | + | chr1_3:7816045-7816064 | None:intergenic | 30.0% | |
| !! | TTAGACTATTTCTACAACCA+AGG | - | chr1_3:7816046-7816065 | Msa0101240:CDS | 30.0% |
| !!! | CAGAGAGTTTTTTAATGCTT+TGG | - | chr1_3:7816399-7816418 | Msa0101240:CDS | 30.0% |
| TCCAAAAATGGTTCAGAAAT+GGG | - | chr1_3:7816546-7816565 | Msa0101240:CDS | 30.0% | |
| ATAGAATCTTCCACAAACTT+GGG | + | chr1_3:7816610-7816629 | None:intergenic | 30.0% | |
| ! | ATAATTTTCGTCTCCCATTT+CGG | - | chr1_3:7816635-7816654 | Msa0101240:CDS | 30.0% |
| ! | TGATTTCTTTTATGCTTCCT+CGG | - | chr1_3:7816687-7816706 | Msa0101240:CDS | 30.0% |
| CCTAATTTGATGAAATGGAT+CGG | - | chr1_3:7816820-7816839 | Msa0101240:CDS | 30.0% | |
| CTAATTTGATGAAATGGATC+GGG | - | chr1_3:7816821-7816840 | Msa0101240:CDS | 30.0% | |
| TTTGCTCTTCCAAATTGTAA+TGG | + | chr1_3:7816997-7817016 | None:intergenic | 30.0% | |
| TACAATTTGGAAGAGCAAAA+AGG | - | chr1_3:7816998-7817017 | Msa0101240:CDS | 30.0% | |
| ACAATTTGGAAGAGCAAAAA+GGG | - | chr1_3:7816999-7817018 | Msa0101240:CDS | 30.0% | |
| ! | AAGAAAGGTGAATTGTTGTT+AGG | - | chr1_3:7817060-7817079 | Msa0101240:CDS | 30.0% |
| TTAGGATCTTTAGTAGCAAA+AGG | + | chr1_3:7817093-7817112 | None:intergenic | 30.0% | |
| TCTGCTCTATCAAAAATCTT+AGG | + | chr1_3:7817111-7817130 | None:intergenic | 30.0% | |
| ! | TAAGATTTTTGATAGAGCAG+AGG | - | chr1_3:7817110-7817129 | Msa0101240:CDS | 30.0% |
| TTTGTTGCAGATAGATTTGT+TGG | - | chr1_3:7817135-7817154 | Msa0101240:CDS | 30.0% | |
| AATTGTTGAAACATGTGCTT+TGG | - | chr1_3:7817172-7817191 | Msa0101240:CDS | 30.0% | |
| CAAAAGTCTTGAAATCAATG+TGG | + | chr1_3:7817262-7817281 | None:intergenic | 30.0% | |
| !!! | CACATTGATTTCAAGACTTT+TGG | - | chr1_3:7817260-7817279 | Msa0101240:CDS | 30.0% |
| !! | TGGTTGTTGAACTTTTTCTT+AGG | - | chr1_3:7817280-7817299 | Msa0101240:CDS | 30.0% |
| ATTTCCAACTTGAATCTCAA+AGG | + | chr1_3:7817313-7817332 | None:intergenic | 30.0% | |
| GGTTGTAGAAATAGTCTAAA+CGG | + | chr1_3:7816045-7816064 | None:intergenic | 30.0% | |
| !! | TTAGACTATTTCTACAACCA+AGG | - | chr1_3:7816046-7816065 | Msa0101240:CDS | 30.0% |
| !!! | CAGAGAGTTTTTTAATGCTT+TGG | - | chr1_3:7816399-7816418 | Msa0101240:CDS | 30.0% |
| TCCAAAAATGGTTCAGAAAT+GGG | - | chr1_3:7816546-7816565 | Msa0101240:CDS | 30.0% | |
| ATAGAATCTTCCACAAACTT+GGG | + | chr1_3:7816610-7816629 | None:intergenic | 30.0% | |
| ! | ATAATTTTCGTCTCCCATTT+CGG | - | chr1_3:7816635-7816654 | Msa0101240:CDS | 30.0% |
| ! | TGATTTCTTTTATGCTTCCT+CGG | - | chr1_3:7816687-7816706 | Msa0101240:CDS | 30.0% |
| CCTAATTTGATGAAATGGAT+CGG | - | chr1_3:7816820-7816839 | Msa0101240:CDS | 30.0% | |
| CTAATTTGATGAAATGGATC+GGG | - | chr1_3:7816821-7816840 | Msa0101240:CDS | 30.0% | |
| TTTGCTCTTCCAAATTGTAA+TGG | + | chr1_3:7816997-7817016 | None:intergenic | 30.0% | |
| TACAATTTGGAAGAGCAAAA+AGG | - | chr1_3:7816998-7817017 | Msa0101240:CDS | 30.0% | |
| ACAATTTGGAAGAGCAAAAA+GGG | - | chr1_3:7816999-7817018 | Msa0101240:CDS | 30.0% | |
| ! | AAGAAAGGTGAATTGTTGTT+AGG | - | chr1_3:7817060-7817079 | Msa0101240:CDS | 30.0% |
| TTAGGATCTTTAGTAGCAAA+AGG | + | chr1_3:7817093-7817112 | None:intergenic | 30.0% | |
| TCTGCTCTATCAAAAATCTT+AGG | + | chr1_3:7817111-7817130 | None:intergenic | 30.0% | |
| ! | TAAGATTTTTGATAGAGCAG+AGG | - | chr1_3:7817110-7817129 | Msa0101240:CDS | 30.0% |
| TTTGTTGCAGATAGATTTGT+TGG | - | chr1_3:7817135-7817154 | Msa0101240:CDS | 30.0% | |
| AATTGTTGAAACATGTGCTT+TGG | - | chr1_3:7817172-7817191 | Msa0101240:CDS | 30.0% | |
| CAAAAGTCTTGAAATCAATG+TGG | + | chr1_3:7817262-7817281 | None:intergenic | 30.0% | |
| !!! | CACATTGATTTCAAGACTTT+TGG | - | chr1_3:7817260-7817279 | Msa0101240:CDS | 30.0% |
| !! | TGGTTGTTGAACTTTTTCTT+AGG | - | chr1_3:7817280-7817299 | Msa0101240:CDS | 30.0% |
| ATTTCCAACTTGAATCTCAA+AGG | + | chr1_3:7817313-7817332 | None:intergenic | 30.0% | |
| !!! | TTTTGGTGTTTGAGGAGATT+AGG | + | chr1_3:7815845-7815864 | None:intergenic | 35.0% |
| ! | TCTGAAACTGAGGATCTTAT+AGG | + | chr1_3:7815917-7815936 | None:intergenic | 35.0% |
| TAGTCTAAACGGTCTTTGTA+GGG | + | chr1_3:7816034-7816053 | None:intergenic | 35.0% | |
| ATAGTCTAAACGGTCTTTGT+AGG | + | chr1_3:7816035-7816054 | None:intergenic | 35.0% | |
| ! | AGATGGTTGACTGGTATTTT+TGG | + | chr1_3:7816099-7816118 | None:intergenic | 35.0% |
| !!! | TTAGGGTTTTGAGCTATGAA+AGG | + | chr1_3:7816145-7816164 | None:intergenic | 35.0% |
| ! | TTCTTGAGCTGTTCATGTTT+TGG | + | chr1_3:7816316-7816335 | None:intergenic | 35.0% |
| !! | GAGAATCAACTTGCTGAAAA+TGG | - | chr1_3:7816421-7816440 | Msa0101240:CDS | 35.0% |
| ! | TTCTTGAATCGTGCTTTGTT+TGG | - | chr1_3:7816487-7816506 | Msa0101240:CDS | 35.0% |
| GTCCAAAAATGGTTCAGAAA+TGG | - | chr1_3:7816545-7816564 | Msa0101240:CDS | 35.0% | |
| ! | ACCCATTTCTGAACCATTTT+TGG | + | chr1_3:7816550-7816569 | None:intergenic | 35.0% |
| CATAGAATCTTCCACAAACT+TGG | + | chr1_3:7816611-7816630 | None:intergenic | 35.0% | |
| CTTTCTTAATGAGCCGAAAT+GGG | + | chr1_3:7816651-7816670 | None:intergenic | 35.0% | |
| TCTTTCTTAATGAGCCGAAA+TGG | + | chr1_3:7816652-7816671 | None:intergenic | 35.0% | |
| ! | GATTTCTTTTATGCTTCCTC+GGG | - | chr1_3:7816688-7816707 | Msa0101240:CDS | 35.0% |
| TTTAGGTGTTTCAAAAGAGG+AGG | - | chr1_3:7816735-7816754 | Msa0101240:CDS | 35.0% | |
| !!! | GCAACGTGTTTTAATTCGTT+TGG | - | chr1_3:7816778-7816797 | Msa0101240:CDS | 35.0% |
| !!! | ACGTGTTTTAATTCGTTTGG+CGG | - | chr1_3:7816781-7816800 | Msa0101240:CDS | 35.0% |
| CCGATCCATTTCATCAAATT+AGG | + | chr1_3:7816823-7816842 | None:intergenic | 35.0% | |
| GTTGCATACAAAATTAGCGA+CGG | - | chr1_3:7816858-7816877 | Msa0101240:CDS | 35.0% | |
| AAATTAGCGACGGAAATTAG+AGG | - | chr1_3:7816868-7816887 | Msa0101240:CDS | 35.0% | |
| ! | GAATATGCCGTTGATGAAAT+CGG | - | chr1_3:7816936-7816955 | Msa0101240:CDS | 35.0% |
| !! | TATACCACCGATTTCATCAA+CGG | + | chr1_3:7816946-7816965 | None:intergenic | 35.0% |
| ! | CTTCCAAATTGTAATGGAAC+CGG | + | chr1_3:7816991-7817010 | None:intergenic | 35.0% |
| !! | GATAGATTTGTTGGTGATGA+AGG | - | chr1_3:7817144-7817163 | Msa0101240:CDS | 35.0% |
| AAACATGTGCTTTGGTCTAA+TGG | - | chr1_3:7817180-7817199 | Msa0101240:CDS | 35.0% | |
| AATCTCAATCTCCAACTGTT+GGG | - | chr1_3:7817208-7817227 | Msa0101240:CDS | 35.0% | |
| CATTGTTTATTCCCAACAGT+TGG | + | chr1_3:7817222-7817241 | None:intergenic | 35.0% | |
| !! | GATTCCTTTGAGATTCAAGT+TGG | - | chr1_3:7817306-7817325 | Msa0101240:CDS | 35.0% |
| ! | CAAGTTGGAAATTCACCTTT+AGG | - | chr1_3:7817321-7817340 | Msa0101240:CDS | 35.0% |
| !!! | TTTTGGTGTTTGAGGAGATT+AGG | + | chr1_3:7815845-7815864 | None:intergenic | 35.0% |
| ! | TCTGAAACTGAGGATCTTAT+AGG | + | chr1_3:7815917-7815936 | None:intergenic | 35.0% |
| TAGTCTAAACGGTCTTTGTA+GGG | + | chr1_3:7816034-7816053 | None:intergenic | 35.0% | |
| ATAGTCTAAACGGTCTTTGT+AGG | + | chr1_3:7816035-7816054 | None:intergenic | 35.0% | |
| ! | AGATGGTTGACTGGTATTTT+TGG | + | chr1_3:7816099-7816118 | None:intergenic | 35.0% |
| !!! | TTAGGGTTTTGAGCTATGAA+AGG | + | chr1_3:7816145-7816164 | None:intergenic | 35.0% |
| ! | TTCTTGAGCTGTTCATGTTT+TGG | + | chr1_3:7816316-7816335 | None:intergenic | 35.0% |
| !! | GAGAATCAACTTGCTGAAAA+TGG | - | chr1_3:7816421-7816440 | Msa0101240:CDS | 35.0% |
| ! | TTCTTGAATCGTGCTTTGTT+TGG | - | chr1_3:7816487-7816506 | Msa0101240:CDS | 35.0% |
| GTCCAAAAATGGTTCAGAAA+TGG | - | chr1_3:7816545-7816564 | Msa0101240:CDS | 35.0% | |
| ! | ACCCATTTCTGAACCATTTT+TGG | + | chr1_3:7816550-7816569 | None:intergenic | 35.0% |
| CATAGAATCTTCCACAAACT+TGG | + | chr1_3:7816611-7816630 | None:intergenic | 35.0% | |
| CTTTCTTAATGAGCCGAAAT+GGG | + | chr1_3:7816651-7816670 | None:intergenic | 35.0% | |
| TCTTTCTTAATGAGCCGAAA+TGG | + | chr1_3:7816652-7816671 | None:intergenic | 35.0% | |
| ! | GATTTCTTTTATGCTTCCTC+GGG | - | chr1_3:7816688-7816707 | Msa0101240:CDS | 35.0% |
| TTTAGGTGTTTCAAAAGAGG+AGG | - | chr1_3:7816735-7816754 | Msa0101240:CDS | 35.0% | |
| !!! | GCAACGTGTTTTAATTCGTT+TGG | - | chr1_3:7816778-7816797 | Msa0101240:CDS | 35.0% |
| !!! | ACGTGTTTTAATTCGTTTGG+CGG | - | chr1_3:7816781-7816800 | Msa0101240:CDS | 35.0% |
| CCGATCCATTTCATCAAATT+AGG | + | chr1_3:7816823-7816842 | None:intergenic | 35.0% | |
| GTTGCATACAAAATTAGCGA+CGG | - | chr1_3:7816858-7816877 | Msa0101240:CDS | 35.0% | |
| AAATTAGCGACGGAAATTAG+AGG | - | chr1_3:7816868-7816887 | Msa0101240:CDS | 35.0% | |
| ! | GAATATGCCGTTGATGAAAT+CGG | - | chr1_3:7816936-7816955 | Msa0101240:CDS | 35.0% |
| !! | TATACCACCGATTTCATCAA+CGG | + | chr1_3:7816946-7816965 | None:intergenic | 35.0% |
| ! | CTTCCAAATTGTAATGGAAC+CGG | + | chr1_3:7816991-7817010 | None:intergenic | 35.0% |
| !! | GATAGATTTGTTGGTGATGA+AGG | - | chr1_3:7817144-7817163 | Msa0101240:CDS | 35.0% |
| AAACATGTGCTTTGGTCTAA+TGG | - | chr1_3:7817180-7817199 | Msa0101240:CDS | 35.0% | |
| AATCTCAATCTCCAACTGTT+GGG | - | chr1_3:7817208-7817227 | Msa0101240:CDS | 35.0% | |
| CATTGTTTATTCCCAACAGT+TGG | + | chr1_3:7817222-7817241 | None:intergenic | 35.0% | |
| !! | GATTCCTTTGAGATTCAAGT+TGG | - | chr1_3:7817306-7817325 | Msa0101240:CDS | 35.0% |
| ! | CAAGTTGGAAATTCACCTTT+AGG | - | chr1_3:7817321-7817340 | Msa0101240:CDS | 35.0% |
| AGAAGGAGTTGAAAGAGTAG+AGG | + | chr1_3:7815822-7815841 | None:intergenic | 40.0% | |
| TGTTTGAGGAGATTAGGAGA+AGG | + | chr1_3:7815839-7815858 | None:intergenic | 40.0% | |
| !!! | AGGGTCTTTTTTGGTGTTTG+AGG | + | chr1_3:7815853-7815872 | None:intergenic | 40.0% |
| TCTTATAGGTGGAAGAAAGG+TGG | + | chr1_3:7815903-7815922 | None:intergenic | 40.0% | |
| GGATCTTATAGGTGGAAGAA+AGG | + | chr1_3:7815906-7815925 | None:intergenic | 40.0% | |
| GAAACTGAGGATCTTATAGG+TGG | + | chr1_3:7815914-7815933 | None:intergenic | 40.0% | |
| !!! | AGGTGGTTTTTCTGAAACTG+AGG | + | chr1_3:7815927-7815946 | None:intergenic | 40.0% |
| ! | CATAGTCACCAGGGATTTTA+CGG | + | chr1_3:7815994-7816013 | None:intergenic | 40.0% |
| CTTTGTAGGGTTGGATGAAA+GGG | + | chr1_3:7816021-7816040 | None:intergenic | 40.0% | |
| TCTTTGTAGGGTTGGATGAA+AGG | + | chr1_3:7816022-7816041 | None:intergenic | 40.0% | |
| ! | TGAAGTATTCATCACGACCT+TGG | + | chr1_3:7816066-7816085 | None:intergenic | 40.0% |
| ! | TTTTGAGCTATGAAAGGACC+AGG | + | chr1_3:7816139-7816158 | None:intergenic | 40.0% |
| ! | CAAGGAGTACAACTACGTTA+GGG | + | chr1_3:7816162-7816181 | None:intergenic | 40.0% |
| ! | TCAAGGAGTACAACTACGTT+AGG | + | chr1_3:7816163-7816182 | None:intergenic | 40.0% |
| AACGTAGTTGTACTCCTTGA+TGG | - | chr1_3:7816163-7816182 | Msa0101240:CDS | 40.0% | |
| GATAAAACCGATGTCTTCAC+AGG | - | chr1_3:7816223-7816242 | Msa0101240:CDS | 40.0% | |
| GTATGTACCTGTGAAGACAT+CGG | + | chr1_3:7816233-7816252 | None:intergenic | 40.0% | |
| !!! | TGTTCATGTTTTGGTTCGGA+GGG | + | chr1_3:7816307-7816326 | None:intergenic | 40.0% |
| !!! | GAGCTGTTCATGTTTTGGTT+CGG | + | chr1_3:7816311-7816330 | None:intergenic | 40.0% |
| CATGACGACTACGTGATTTA+AGG | + | chr1_3:7816354-7816373 | None:intergenic | 40.0% | |
| !! | TTAGGTCCAGTTCTGAAACT+GGG | - | chr1_3:7816580-7816599 | Msa0101240:CDS | 40.0% |
| AATCTTCCACAAACTTGGGT+AGG | + | chr1_3:7816606-7816625 | None:intergenic | 40.0% | |
| GCGTTTAGGTGTTTCAAAAG+AGG | - | chr1_3:7816732-7816751 | Msa0101240:CDS | 40.0% | |
| !!! | CGTGTTTTAATTCGTTTGGC+GGG | - | chr1_3:7816782-7816801 | Msa0101240:CDS | 40.0% |
| !! | AGCTTTTCGTATTGATCCAC+CGG | - | chr1_3:7816969-7816988 | Msa0101240:CDS | 40.0% |
| ACAGTTGGAGATTGAGATTC+TGG | + | chr1_3:7817207-7817226 | None:intergenic | 40.0% | |
| GAATCTCAATCTCCAACTGT+TGG | - | chr1_3:7817207-7817226 | Msa0101240:CDS | 40.0% | |
| GTTGGGAATAAACAATGTGC+TGG | - | chr1_3:7817225-7817244 | Msa0101240:CDS | 40.0% | |
| TGATCTCTTTAGTGAGGTGA+GGG | + | chr1_3:7817358-7817377 | None:intergenic | 40.0% | |
| TTGATCTCTTTAGTGAGGTG+AGG | + | chr1_3:7817359-7817378 | None:intergenic | 40.0% | |
| GAAGCTTGATCTCTTTAGTG+AGG | + | chr1_3:7817364-7817383 | None:intergenic | 40.0% | |
| AGAAGGAGTTGAAAGAGTAG+AGG | + | chr1_3:7815822-7815841 | None:intergenic | 40.0% | |
| TGTTTGAGGAGATTAGGAGA+AGG | + | chr1_3:7815839-7815858 | None:intergenic | 40.0% | |
| !!! | AGGGTCTTTTTTGGTGTTTG+AGG | + | chr1_3:7815853-7815872 | None:intergenic | 40.0% |
| TCTTATAGGTGGAAGAAAGG+TGG | + | chr1_3:7815903-7815922 | None:intergenic | 40.0% | |
| GGATCTTATAGGTGGAAGAA+AGG | + | chr1_3:7815906-7815925 | None:intergenic | 40.0% | |
| GAAACTGAGGATCTTATAGG+TGG | + | chr1_3:7815914-7815933 | None:intergenic | 40.0% | |
| !!! | AGGTGGTTTTTCTGAAACTG+AGG | + | chr1_3:7815927-7815946 | None:intergenic | 40.0% |
| ! | CATAGTCACCAGGGATTTTA+CGG | + | chr1_3:7815994-7816013 | None:intergenic | 40.0% |
| CTTTGTAGGGTTGGATGAAA+GGG | + | chr1_3:7816021-7816040 | None:intergenic | 40.0% | |
| TCTTTGTAGGGTTGGATGAA+AGG | + | chr1_3:7816022-7816041 | None:intergenic | 40.0% | |
| ! | TGAAGTATTCATCACGACCT+TGG | + | chr1_3:7816066-7816085 | None:intergenic | 40.0% |
| ! | TTTTGAGCTATGAAAGGACC+AGG | + | chr1_3:7816139-7816158 | None:intergenic | 40.0% |
| ! | CAAGGAGTACAACTACGTTA+GGG | + | chr1_3:7816162-7816181 | None:intergenic | 40.0% |
| ! | TCAAGGAGTACAACTACGTT+AGG | + | chr1_3:7816163-7816182 | None:intergenic | 40.0% |
| AACGTAGTTGTACTCCTTGA+TGG | - | chr1_3:7816163-7816182 | Msa0101240:CDS | 40.0% | |
| GATAAAACCGATGTCTTCAC+AGG | - | chr1_3:7816223-7816242 | Msa0101240:CDS | 40.0% | |
| GTATGTACCTGTGAAGACAT+CGG | + | chr1_3:7816233-7816252 | None:intergenic | 40.0% | |
| !!! | TGTTCATGTTTTGGTTCGGA+GGG | + | chr1_3:7816307-7816326 | None:intergenic | 40.0% |
| !!! | GAGCTGTTCATGTTTTGGTT+CGG | + | chr1_3:7816311-7816330 | None:intergenic | 40.0% |
| CATGACGACTACGTGATTTA+AGG | + | chr1_3:7816354-7816373 | None:intergenic | 40.0% | |
| !! | TTAGGTCCAGTTCTGAAACT+GGG | - | chr1_3:7816580-7816599 | Msa0101240:CDS | 40.0% |
| AATCTTCCACAAACTTGGGT+AGG | + | chr1_3:7816606-7816625 | None:intergenic | 40.0% | |
| GCGTTTAGGTGTTTCAAAAG+AGG | - | chr1_3:7816732-7816751 | Msa0101240:CDS | 40.0% | |
| !!! | CGTGTTTTAATTCGTTTGGC+GGG | - | chr1_3:7816782-7816801 | Msa0101240:CDS | 40.0% |
| !! | AGCTTTTCGTATTGATCCAC+CGG | - | chr1_3:7816969-7816988 | Msa0101240:CDS | 40.0% |
| ACAGTTGGAGATTGAGATTC+TGG | + | chr1_3:7817207-7817226 | None:intergenic | 40.0% | |
| GAATCTCAATCTCCAACTGT+TGG | - | chr1_3:7817207-7817226 | Msa0101240:CDS | 40.0% | |
| GTTGGGAATAAACAATGTGC+TGG | - | chr1_3:7817225-7817244 | Msa0101240:CDS | 40.0% | |
| TGATCTCTTTAGTGAGGTGA+GGG | + | chr1_3:7817358-7817377 | None:intergenic | 40.0% | |
| TTGATCTCTTTAGTGAGGTG+AGG | + | chr1_3:7817359-7817378 | None:intergenic | 40.0% | |
| GAAGCTTGATCTCTTTAGTG+AGG | + | chr1_3:7817364-7817383 | None:intergenic | 40.0% | |
| !!! | TGGTGGAAGAGGGTCTTTTT+TGG | + | chr1_3:7815862-7815881 | None:intergenic | 45.0% |
| TATAGGTGGAAGAAAGGTGG+AGG | + | chr1_3:7815900-7815919 | None:intergenic | 45.0% | |
| TGAGAGATGGAGACTTGGAA+AGG | + | chr1_3:7815947-7815966 | None:intergenic | 45.0% | |
| GGTTGTTTGTGGTTGAGAGA+TGG | + | chr1_3:7815960-7815979 | None:intergenic | 45.0% | |
| ATCGGAAGCTTGGTTGTTTG+TGG | + | chr1_3:7815971-7815990 | None:intergenic | 45.0% | |
| ! | GATTTTACGGATCGGAAGCT+TGG | + | chr1_3:7815981-7816000 | None:intergenic | 45.0% |
| ! | TCACCAGGGATTTTACGGAT+CGG | + | chr1_3:7815989-7816008 | None:intergenic | 45.0% |
| CGTAAAATCCCTGGTGACTA+TGG | - | chr1_3:7815992-7816011 | Msa0101240:CDS | 45.0% | |
| CTAAACGGTCTTTGTAGGGT+TGG | + | chr1_3:7816030-7816049 | None:intergenic | 45.0% | |
| ACACCTTCTACAGAACTCAC+TGG | - | chr1_3:7816253-7816272 | Msa0101240:CDS | 45.0% | |
| !!! | CTGTTCATGTTTTGGTTCGG+AGG | + | chr1_3:7816308-7816327 | None:intergenic | 45.0% |
| CTGTAGCATGACTGAAACTC+AGG | + | chr1_3:7816382-7816401 | None:intergenic | 45.0% | |
| TGGACTTGACGGTCCAAAAA+TGG | - | chr1_3:7816534-7816553 | Msa0101240:CDS | 45.0% | |
| !! | GTTAGGTCCAGTTCTGAAAC+TGG | - | chr1_3:7816579-7816598 | Msa0101240:CDS | 45.0% |
| AGAGGAGCAATTAGATCTGC+TGG | - | chr1_3:7816886-7816905 | Msa0101240:CDS | 45.0% | |
| CATCAACGGCATATTCTCCA+TGG | + | chr1_3:7816932-7816951 | None:intergenic | 45.0% | |
| ! | TATGCCGTTGATGAAATCGG+TGG | - | chr1_3:7816939-7816958 | Msa0101240:CDS | 45.0% |
| ! | CCAAATTGTAATGGAACCGG+TGG | + | chr1_3:7816988-7817007 | None:intergenic | 45.0% |
| !! | CCACCGGTTCCATTACAATT+TGG | - | chr1_3:7816985-7817004 | Msa0101240:CDS | 45.0% |
| TGGAAGAGCAAAAAGGGACA+TGG | - | chr1_3:7817005-7817024 | Msa0101240:CDS | 45.0% | |
| AGGGTAATAGCAGGACCTAA+AGG | + | chr1_3:7817339-7817358 | None:intergenic | 45.0% | |
| !!! | TGGTGGAAGAGGGTCTTTTT+TGG | + | chr1_3:7815862-7815881 | None:intergenic | 45.0% |
| TATAGGTGGAAGAAAGGTGG+AGG | + | chr1_3:7815900-7815919 | None:intergenic | 45.0% | |
| TGAGAGATGGAGACTTGGAA+AGG | + | chr1_3:7815947-7815966 | None:intergenic | 45.0% | |
| GGTTGTTTGTGGTTGAGAGA+TGG | + | chr1_3:7815960-7815979 | None:intergenic | 45.0% | |
| ATCGGAAGCTTGGTTGTTTG+TGG | + | chr1_3:7815971-7815990 | None:intergenic | 45.0% | |
| ! | GATTTTACGGATCGGAAGCT+TGG | + | chr1_3:7815981-7816000 | None:intergenic | 45.0% |
| ! | TCACCAGGGATTTTACGGAT+CGG | + | chr1_3:7815989-7816008 | None:intergenic | 45.0% |
| CGTAAAATCCCTGGTGACTA+TGG | - | chr1_3:7815992-7816011 | Msa0101240:CDS | 45.0% | |
| CTAAACGGTCTTTGTAGGGT+TGG | + | chr1_3:7816030-7816049 | None:intergenic | 45.0% | |
| ACACCTTCTACAGAACTCAC+TGG | - | chr1_3:7816253-7816272 | Msa0101240:CDS | 45.0% | |
| !!! | CTGTTCATGTTTTGGTTCGG+AGG | + | chr1_3:7816308-7816327 | None:intergenic | 45.0% |
| CTGTAGCATGACTGAAACTC+AGG | + | chr1_3:7816382-7816401 | None:intergenic | 45.0% | |
| TGGACTTGACGGTCCAAAAA+TGG | - | chr1_3:7816534-7816553 | Msa0101240:CDS | 45.0% | |
| !! | GTTAGGTCCAGTTCTGAAAC+TGG | - | chr1_3:7816579-7816598 | Msa0101240:CDS | 45.0% |
| AGAGGAGCAATTAGATCTGC+TGG | - | chr1_3:7816886-7816905 | Msa0101240:CDS | 45.0% | |
| CATCAACGGCATATTCTCCA+TGG | + | chr1_3:7816932-7816951 | None:intergenic | 45.0% | |
| ! | TATGCCGTTGATGAAATCGG+TGG | - | chr1_3:7816939-7816958 | Msa0101240:CDS | 45.0% |
| ! | CCAAATTGTAATGGAACCGG+TGG | + | chr1_3:7816988-7817007 | None:intergenic | 45.0% |
| !! | CCACCGGTTCCATTACAATT+TGG | - | chr1_3:7816985-7817004 | Msa0101240:CDS | 45.0% |
| TGGAAGAGCAAAAAGGGACA+TGG | - | chr1_3:7817005-7817024 | Msa0101240:CDS | 45.0% | |
| AGGGTAATAGCAGGACCTAA+AGG | + | chr1_3:7817339-7817358 | None:intergenic | 45.0% | |
| !! | CGTGATAAGGTGGTGGAAGA+GGG | + | chr1_3:7815872-7815891 | None:intergenic | 50.0% |
| !! | TCGTGATAAGGTGGTGGAAG+AGG | + | chr1_3:7815873-7815892 | None:intergenic | 50.0% |
| GAGATGGAGACTTGGAAAGG+TGG | + | chr1_3:7815944-7815963 | None:intergenic | 50.0% | |
| GTGGTTGAGAGATGGAGACT+TGG | + | chr1_3:7815952-7815971 | None:intergenic | 50.0% | |
| CTTCCGATCCGTAAAATCCC+TGG | - | chr1_3:7815983-7816002 | Msa0101240:CDS | 50.0% | |
| AAGGGATGCCATAGTCACCA+GGG | + | chr1_3:7816003-7816022 | None:intergenic | 50.0% | |
| AAAGGGATGCCATAGTCACC+AGG | + | chr1_3:7816004-7816023 | None:intergenic | 50.0% | |
| TAGTGCGGAAGATGGTTGAC+TGG | + | chr1_3:7816108-7816127 | None:intergenic | 50.0% | |
| AGGAACGTTAGTGCGGAAGA+TGG | + | chr1_3:7816116-7816135 | None:intergenic | 50.0% | |
| TGAGCTATGAAAGGACCAGG+AGG | + | chr1_3:7816136-7816155 | None:intergenic | 50.0% | |
| ! | CGGGGAAGCTTTTACCATCA+AGG | + | chr1_3:7816180-7816199 | None:intergenic | 50.0% |
| CCACCAGTGAGTTCTGTAGA+AGG | + | chr1_3:7816259-7816278 | None:intergenic | 50.0% | |
| CCTTCTACAGAACTCACTGG+TGG | - | chr1_3:7816256-7816275 | Msa0101240:CDS | 50.0% | |
| !!! | GTTTTGGTTCGGAGGGATCA+AGG | + | chr1_3:7816300-7816319 | None:intergenic | 50.0% |
| AACCCTGTTGACACCGAACT+TGG | - | chr1_3:7816514-7816533 | Msa0101240:CDS | 50.0% | |
| !! | GTCCAAGTTCGGTGTCAACA+GGG | + | chr1_3:7816519-7816538 | None:intergenic | 50.0% |
| !! | AGTCCAAGTTCGGTGTCAAC+AGG | + | chr1_3:7816520-7816539 | None:intergenic | 50.0% |
| GACACCGAACTTGGACTTGA+CGG | - | chr1_3:7816523-7816542 | Msa0101240:CDS | 50.0% | |
| TGGACCGTCAAGTCCAAGTT+CGG | + | chr1_3:7816530-7816549 | None:intergenic | 50.0% | |
| TTGATGAAATGGATCGGGCG+CGG | - | chr1_3:7816826-7816845 | Msa0101240:CDS | 50.0% | |
| GGAGCAATTAGATCTGCTGG+CGG | - | chr1_3:7816889-7816908 | Msa0101240:CDS | 50.0% | |
| GAGCAATTAGATCTGCTGGC+GGG | - | chr1_3:7816890-7816909 | Msa0101240:CDS | 50.0% | |
| AGCAATTAGATCTGCTGGCG+GGG | - | chr1_3:7816891-7816910 | Msa0101240:CDS | 50.0% | |
| AGTGAGGTGAGGGTAATAGC+AGG | + | chr1_3:7817348-7817367 | None:intergenic | 50.0% | |
| !! | CGTGATAAGGTGGTGGAAGA+GGG | + | chr1_3:7815872-7815891 | None:intergenic | 50.0% |
| !! | TCGTGATAAGGTGGTGGAAG+AGG | + | chr1_3:7815873-7815892 | None:intergenic | 50.0% |
| GAGATGGAGACTTGGAAAGG+TGG | + | chr1_3:7815944-7815963 | None:intergenic | 50.0% | |
| GTGGTTGAGAGATGGAGACT+TGG | + | chr1_3:7815952-7815971 | None:intergenic | 50.0% | |
| CTTCCGATCCGTAAAATCCC+TGG | - | chr1_3:7815983-7816002 | Msa0101240:CDS | 50.0% | |
| AAGGGATGCCATAGTCACCA+GGG | + | chr1_3:7816003-7816022 | None:intergenic | 50.0% | |
| AAAGGGATGCCATAGTCACC+AGG | + | chr1_3:7816004-7816023 | None:intergenic | 50.0% | |
| TAGTGCGGAAGATGGTTGAC+TGG | + | chr1_3:7816108-7816127 | None:intergenic | 50.0% | |
| AGGAACGTTAGTGCGGAAGA+TGG | + | chr1_3:7816116-7816135 | None:intergenic | 50.0% | |
| TGAGCTATGAAAGGACCAGG+AGG | + | chr1_3:7816136-7816155 | None:intergenic | 50.0% | |
| ! | CGGGGAAGCTTTTACCATCA+AGG | + | chr1_3:7816180-7816199 | None:intergenic | 50.0% |
| CCACCAGTGAGTTCTGTAGA+AGG | + | chr1_3:7816259-7816278 | None:intergenic | 50.0% | |
| CCTTCTACAGAACTCACTGG+TGG | - | chr1_3:7816256-7816275 | Msa0101240:CDS | 50.0% | |
| !!! | GTTTTGGTTCGGAGGGATCA+AGG | + | chr1_3:7816300-7816319 | None:intergenic | 50.0% |
| AACCCTGTTGACACCGAACT+TGG | - | chr1_3:7816514-7816533 | Msa0101240:CDS | 50.0% | |
| !! | GTCCAAGTTCGGTGTCAACA+GGG | + | chr1_3:7816519-7816538 | None:intergenic | 50.0% |
| !! | AGTCCAAGTTCGGTGTCAAC+AGG | + | chr1_3:7816520-7816539 | None:intergenic | 50.0% |
| GACACCGAACTTGGACTTGA+CGG | - | chr1_3:7816523-7816542 | Msa0101240:CDS | 50.0% | |
| TGGACCGTCAAGTCCAAGTT+CGG | + | chr1_3:7816530-7816549 | None:intergenic | 50.0% | |
| TTGATGAAATGGATCGGGCG+CGG | - | chr1_3:7816826-7816845 | Msa0101240:CDS | 50.0% | |
| GGAGCAATTAGATCTGCTGG+CGG | - | chr1_3:7816889-7816908 | Msa0101240:CDS | 50.0% | |
| GAGCAATTAGATCTGCTGGC+GGG | - | chr1_3:7816890-7816909 | Msa0101240:CDS | 50.0% | |
| AGCAATTAGATCTGCTGGCG+GGG | - | chr1_3:7816891-7816910 | Msa0101240:CDS | 50.0% | |
| AGTGAGGTGAGGGTAATAGC+AGG | + | chr1_3:7817348-7817367 | None:intergenic | 50.0% | |
| GGAACGTCGTGATAAGGTGG+TGG | + | chr1_3:7815879-7815898 | None:intergenic | 55.0% | |
| GGAGGAACGTCGTGATAAGG+TGG | + | chr1_3:7815882-7815901 | None:intergenic | 55.0% | |
| GGTGGAGGAACGTCGTGATA+AGG | + | chr1_3:7815885-7815904 | None:intergenic | 55.0% | |
| TTCCGCACTAACGTTCCTCC+TGG | - | chr1_3:7816118-7816137 | Msa0101240:CDS | 55.0% | |
| GACCAGGAGGAACGTTAGTG+CGG | + | chr1_3:7816123-7816142 | None:intergenic | 55.0% | |
| TTCGATGCGTCGAAGAGGAC+GGG | + | chr1_3:7816199-7816218 | None:intergenic | 55.0% | |
| CTTCGATGCGTCGAAGAGGA+CGG | + | chr1_3:7816200-7816219 | None:intergenic | 55.0% | |
| CGATCTTCGATGCGTCGAAG+AGG | + | chr1_3:7816204-7816223 | None:intergenic | 55.0% | |
| GGTAGGCCCAGTTTCAGAAC+TGG | + | chr1_3:7816589-7816608 | None:intergenic | 55.0% | |
| ACTGGGCCTACCCAAGTTTG+TGG | - | chr1_3:7816597-7816616 | Msa0101240:CDS | 55.0% | |
| ! | TTCCTCGGGATTTGCTCTCG+AGG | - | chr1_3:7816702-7816721 | Msa0101240:CDS | 55.0% |
| TTCCTCGAGAGCAAATCCCG+AGG | + | chr1_3:7816707-7816726 | None:intergenic | 55.0% | |
| ! | CTCGAGGAAGCAGAGCGTTT+AGG | - | chr1_3:7816718-7816737 | Msa0101240:CDS | 55.0% |
| TGCTGGCGGGGAGATTACTA+TGG | - | chr1_3:7816903-7816922 | Msa0101240:CDS | 55.0% | |
| TGGCGGGGAGATTACTATGG+CGG | - | chr1_3:7816906-7816925 | Msa0101240:CDS | 55.0% | |
| GGAGATTACTATGGCGGCCA+TGG | - | chr1_3:7816912-7816931 | Msa0101240:CDS | 55.0% | |
| GGAACGTCGTGATAAGGTGG+TGG | + | chr1_3:7815879-7815898 | None:intergenic | 55.0% | |
| GGAGGAACGTCGTGATAAGG+TGG | + | chr1_3:7815882-7815901 | None:intergenic | 55.0% | |
| GGTGGAGGAACGTCGTGATA+AGG | + | chr1_3:7815885-7815904 | None:intergenic | 55.0% | |
| TTCCGCACTAACGTTCCTCC+TGG | - | chr1_3:7816118-7816137 | Msa0101240:CDS | 55.0% | |
| GACCAGGAGGAACGTTAGTG+CGG | + | chr1_3:7816123-7816142 | None:intergenic | 55.0% | |
| TTCGATGCGTCGAAGAGGAC+GGG | + | chr1_3:7816199-7816218 | None:intergenic | 55.0% | |
| CTTCGATGCGTCGAAGAGGA+CGG | + | chr1_3:7816200-7816219 | None:intergenic | 55.0% | |
| CGATCTTCGATGCGTCGAAG+AGG | + | chr1_3:7816204-7816223 | None:intergenic | 55.0% | |
| GGTAGGCCCAGTTTCAGAAC+TGG | + | chr1_3:7816589-7816608 | None:intergenic | 55.0% | |
| ACTGGGCCTACCCAAGTTTG+TGG | - | chr1_3:7816597-7816616 | Msa0101240:CDS | 55.0% | |
| ! | TTCCTCGGGATTTGCTCTCG+AGG | - | chr1_3:7816702-7816721 | Msa0101240:CDS | 55.0% |
| TTCCTCGAGAGCAAATCCCG+AGG | + | chr1_3:7816707-7816726 | None:intergenic | 55.0% | |
| ! | CTCGAGGAAGCAGAGCGTTT+AGG | - | chr1_3:7816718-7816737 | Msa0101240:CDS | 55.0% |
| TGCTGGCGGGGAGATTACTA+TGG | - | chr1_3:7816903-7816922 | Msa0101240:CDS | 55.0% | |
| TGGCGGGGAGATTACTATGG+CGG | - | chr1_3:7816906-7816925 | Msa0101240:CDS | 55.0% | |
| GGAGATTACTATGGCGGCCA+TGG | - | chr1_3:7816912-7816931 | Msa0101240:CDS | 55.0% | |
| TCGATGCGTCGAAGAGGACG+GGG | + | chr1_3:7816198-7816217 | None:intergenic | 60.0% | |
| ATGAAATGGATCGGGCGCGG+TGG | - | chr1_3:7816829-7816848 | Msa0101240:CDS | 60.0% | |
| TCGATGCGTCGAAGAGGACG+GGG | + | chr1_3:7816198-7816217 | None:intergenic | 60.0% | |
| ATGAAATGGATCGGGCGCGG+TGG | - | chr1_3:7816829-7816848 | Msa0101240:CDS | 60.0% | |
| GGATCGGGCGCGGTGGAGTG+AGG | - | chr1_3:7816836-7816855 | Msa0101240:CDS | 75.0% | |
| GGATCGGGCGCGGTGGAGTG+AGG | - | chr1_3:7816836-7816855 | Msa0101240:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 7815812 | 7817386 | 7815812 | ID=Msa0101240;Name=Msa0101240 |
| chr1_3 | mRNA | 7815812 | 7817386 | 7815812 | ID=Msa0101240-mRNA-1;Parent=Msa0101240;Name=Msa0101240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|524 |
| chr1_3 | exon | 7815812 | 7817386 | 7815812 | ID=Msa0101240-mRNA-1:exon:3079;Parent=Msa0101240-mRNA-1 |
| chr1_3 | CDS | 7815812 | 7817386 | 7815812 | ID=Msa0101240-mRNA-1:cds;Parent=Msa0101240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
