Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129080 | sp|Q941I6|PMS1_ARATH | 56.610 | 938 | 332 | 12 | 7 | 926 | 16 | 896 | 0.0 | 994 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129080 | A0A396JUA8 | 96.512 | 946 | 15 | 2 | 1 | 941 | 1 | 933 | 0.0 | 1872 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0129080 | Msa0174880 | 0.946777 | 2.414533e-105 | -8.615850e-47 |
| Msa0129080 | Msa0358890 | 0.803064 | 4.166568e-49 | -8.615850e-47 |
| Msa0129080 | Msa0378720 | 0.800180 | 1.626485e-48 | -8.615850e-47 |
| Msa0129080 | Msa0789980 | 0.946811 | 2.260935e-105 | -8.615850e-47 |
| Msa0129080 | Msa1370720 | 0.923495 | 2.464398e-89 | -8.615850e-47 |
| Msa0129080 | Msa1443760 | 0.957840 | 1.022468e-115 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129080 | MtrunA17_Chr1g0195721 | 96.512 | 946 | 15 | 2 | 1 | 941 | 1 | 933 | 0.0 | 1872 |
| Msa0129080 | MtrunA17_Chr3g0077711 | 32.492 | 317 | 202 | 8 | 8 | 319 | 7 | 316 | 2.82e-36 | 147 |
| Msa0129080 | MtrunA17_Chr5g0407101 | 24.528 | 371 | 245 | 9 | 8 | 350 | 4 | 367 | 7.68e-24 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129080 | AT4G02460.1 | 56.610 | 938 | 332 | 12 | 7 | 926 | 16 | 896 | 0.0 | 994 |
| Msa0129080 | AT4G02460.4 | 54.675 | 845 | 308 | 13 | 100 | 926 | 11 | 798 | 0.0 | 840 |
| Msa0129080 | AT4G02460.2 | 54.657 | 816 | 297 | 12 | 7 | 804 | 16 | 776 | 0.0 | 800 |
| Msa0129080 | AT4G02460.3 | 51.867 | 723 | 275 | 12 | 100 | 804 | 11 | 678 | 0.0 | 644 |
| Msa0129080 | AT4G09140.1 | 32.722 | 327 | 202 | 9 | 1 | 319 | 22 | 338 | 1.15e-37 | 152 |
| Msa0129080 | AT4G35520.3 | 27.249 | 378 | 230 | 10 | 6 | 358 | 2 | 359 | 1.14e-27 | 121 |
| Msa0129080 | AT4G35520.3 | 28.054 | 221 | 120 | 7 | 734 | 934 | 920 | 1121 | 7.77e-11 | 67.0 |
| Msa0129080 | AT4G35520.2 | 28.161 | 348 | 211 | 9 | 6 | 328 | 2 | 335 | 1.44e-27 | 121 |
| Msa0129080 | AT4G35520.2 | 28.054 | 221 | 120 | 7 | 734 | 934 | 947 | 1148 | 8.52e-11 | 66.6 |
| Msa0129080 | AT4G35520.6 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 4.21e-23 | 106 |
| Msa0129080 | AT4G35520.6 | 28.054 | 221 | 120 | 7 | 734 | 934 | 910 | 1111 | 8.58e-11 | 66.6 |
| Msa0129080 | AT4G35520.4 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 4.23e-23 | 106 |
| Msa0129080 | AT4G35520.1 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 5.12e-23 | 106 |
| Msa0129080 | AT4G35520.1 | 28.054 | 221 | 120 | 7 | 734 | 934 | 922 | 1123 | 8.91e-11 | 66.6 |
| Msa0129080 | AT4G35520.5 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 5.83e-23 | 106 |
| Msa0129080 | AT4G35520.5 | 27.586 | 232 | 121 | 7 | 734 | 934 | 910 | 1125 | 5.49e-11 | 67.4 |
| Msa0129080 | AT4G35520.7 | 27.586 | 232 | 121 | 7 | 734 | 934 | 710 | 925 | 7.28e-11 | 67.0 |
Find 194 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATTTATCATTGGTAAAT+TGG | 0.152350 | 1_3:-58888933 | Msa0129080:CDS |
| CTTCAGTCTCTGACTACTTT+TGG | 0.163663 | 1_3:-58892109 | Msa0129080:CDS |
| ACTGGGTAACGGAAGGAATT+TGG | 0.197107 | 1_3:-58891094 | Msa0129080:CDS |
| TTGAGTTCTCTTTGTGCTTT+GGG | 0.201918 | 1_3:-58892070 | Msa0129080:CDS |
| TTGAAATGATTTCAGGTTCT+TGG | 0.223911 | 1_3:-58892172 | Msa0129080:intron |
| GCTTAGAAGTTTCATTAATT+TGG | 0.226550 | 1_3:+58890176 | None:intergenic |
| TTAAACTCTTTGCTTCTTAC+AGG | 0.234975 | 1_3:+58891902 | None:intergenic |
| CAGAGCGCACAAAACTTTAA+AGG | 0.246050 | 1_3:-58890479 | Msa0129080:CDS |
| AAGAAAATTGCGCGACAAAT+TGG | 0.251802 | 1_3:-58891962 | Msa0129080:CDS |
| GAGAGAGAAGAGACTTTCTT+TGG | 0.257630 | 1_3:-58889524 | Msa0129080:CDS |
| GGGGATAACTCCAATCTTAT+TGG | 0.270951 | 1_3:+58888388 | None:intergenic |
| TTGTCTATAACTACCAATTA+TGG | 0.281795 | 1_3:+58886318 | None:intergenic |
| CCTGAGGAATCGCCACATTC+AGG | 0.292943 | 1_3:+58890719 | None:intergenic |
| CATGGAGAATGTTCCATAAT+TGG | 0.303790 | 1_3:-58886331 | Msa0129080:CDS |
| GTTGAGTTCTCTTTGTGCTT+TGG | 0.311062 | 1_3:-58892071 | Msa0129080:CDS |
| CAGAGGTTGTTGGTTCAATA+TGG | 0.311266 | 1_3:+58888686 | None:intergenic |
| AATGCAGGAGTAATTAATTA+TGG | 0.318351 | 1_3:-58885928 | Msa0129080:exon |
| CGGAATATACGTAAGGAATA+TGG | 0.320588 | 1_3:-58891878 | Msa0129080:CDS |
| CTCTCTAAGGGCTTGCAATA+AGG | 0.337830 | 1_3:+58890876 | None:intergenic |
| TACAGCAACAAAATTGTTAA+GGG | 0.349954 | 1_3:+58890321 | None:intergenic |
| TCTGAGAGCTGCAAAGTTGA+TGG | 0.350885 | 1_3:-58891135 | Msa0129080:CDS |
| TCTTTCTGCTGTTCAATGTC+TGG | 0.350891 | 1_3:+58889350 | None:intergenic |
| CTGGGTAACGGAAGGAATTT+GGG | 0.351699 | 1_3:-58891093 | Msa0129080:CDS |
| GTTTCAGATACTTGAGCATT+TGG | 0.356986 | 1_3:-58886045 | Msa0129080:intron |
| TTCAATCTTGGATTTATCAT+TGG | 0.358205 | 1_3:-58888941 | Msa0129080:CDS |
| TTACAGCAACAAAATTGTTA+AGG | 0.359742 | 1_3:+58890320 | None:intergenic |
| CATTTGACGTTTAATCATTC+CGG | 0.364164 | 1_3:-58892001 | Msa0129080:CDS |
| GTGATTGGACAATTCAATCT+TGG | 0.365478 | 1_3:-58888953 | Msa0129080:CDS |
| CGTGCAGGCGATGAACAAAT+TGG | 0.368469 | 1_3:+58889622 | None:intergenic |
| TCTTCTCTCTCCTACTCTTA+AGG | 0.372090 | 1_3:+58889536 | None:intergenic |
| AGATTTATTCATTGTGGATC+AGG | 0.374375 | 1_3:-58888906 | Msa0129080:intron |
| TATATCCATTTCAGGAAGAA+TGG | 0.378291 | 1_3:-58887272 | Msa0129080:intron |
| AACAAGATCATATCTTCATT+TGG | 0.379755 | 1_3:-58890200 | Msa0129080:CDS |
| CAATTCACATGGACATAATC+AGG | 0.380435 | 1_3:-58888345 | Msa0129080:intron |
| ATAGCAAAAGGCGTTCGATT+TGG | 0.383212 | 1_3:-58891294 | Msa0129080:CDS |
| TCACTATACGGCTGCAACTC+TGG | 0.383524 | 1_3:-58889384 | Msa0129080:CDS |
| TTTATCAGATTGTTGCTAGA+TGG | 0.385028 | 1_3:+58889676 | None:intergenic |
| ACAGCATAAGAGGCATTATC+AGG | 0.385292 | 1_3:+58890832 | None:intergenic |
| GTTGGTTCAATATGGTTGAT+TGG | 0.388187 | 1_3:+58888694 | None:intergenic |
| AACGTCAAATGCGTTGCAAC+CGG | 0.389282 | 1_3:+58892013 | None:intergenic |
| GCAAACCAACGTACCATGTT+AGG | 0.389360 | 1_3:+58890055 | None:intergenic |
| CTTGAACAATCTTTCCAGTT+CGG | 0.390899 | 1_3:+58889304 | None:intergenic |
| TGATCTTGTTATCAGGTCAT+TGG | 0.393473 | 1_3:+58890213 | None:intergenic |
| AAATACTACAGAGCATGTTT+TGG | 0.394023 | 1_3:-58889656 | Msa0129080:CDS |
| TTTGTTGTAAGCCCTCTCTA+AGG | 0.396357 | 1_3:+58890863 | None:intergenic |
| TATCTTCTGACCAGAGGACT+TGG | 0.403945 | 1_3:+58889588 | None:intergenic |
| TGAAATGCCGCAACCGTTAT+CGG | 0.405670 | 1_3:+58892270 | None:intergenic |
| CTTGTGGAGCTTGATTTCTA+AGG | 0.406330 | 1_3:+58890248 | None:intergenic |
| CATGAACACTTTCAACTGCT+TGG | 0.406413 | 1_3:-58891178 | Msa0129080:CDS |
| GTCTCCTATCGTAACGAAAC+CGG | 0.407956 | 1_3:-58890746 | Msa0129080:CDS |
| GCCAACATTGCACGAACTCT+TGG | 0.408478 | 1_3:+58886271 | None:intergenic |
| GGTTGATTCGTGAGAGTGGT+GGG | 0.409407 | 1_3:-58890528 | Msa0129080:CDS |
| CAATCCAGCAAATACAGATA+TGG | 0.412593 | 1_3:-58889499 | Msa0129080:CDS |
| GACCATTAGCGCAGTACATC+AGG | 0.412609 | 1_3:+58885762 | None:intergenic |
| TAGAATACCTTGAAGCTGTT+TGG | 0.415285 | 1_3:+58892247 | None:intergenic |
| GAAGATATGATCTTGTTATC+AGG | 0.417275 | 1_3:+58890206 | None:intergenic |
| TTTCTTTCCAAGCCTGGACT+GGG | 0.421406 | 1_3:-58891111 | Msa0129080:CDS |
| GAAGCAACTATTTCTTCCTC+AGG | 0.429926 | 1_3:+58888367 | None:intergenic |
| TTTGGCTGCACGAACACAAC+TGG | 0.430222 | 1_3:-58891276 | Msa0129080:CDS |
| CAGGAAGAATGGATTTACTT+TGG | 0.430284 | 1_3:-58887261 | Msa0129080:CDS |
| CATATGTAGGCCAATAAGAT+TGG | 0.432843 | 1_3:-58888398 | Msa0129080:intron |
| TCAATACTGCTAGTATTTCT+CGG | 0.433938 | 1_3:-58890678 | Msa0129080:CDS |
| TTCAGAAGCATTATTAGAAT+CGG | 0.437195 | 1_3:+58890588 | None:intergenic |
| AAATTCATTGACAGCATAAG+AGG | 0.438687 | 1_3:+58890822 | None:intergenic |
| TTGGTTCAATATGGTTGATT+GGG | 0.438724 | 1_3:+58888695 | None:intergenic |
| TCAATGTAACTCCTGATAAG+AGG | 0.441411 | 1_3:-58890924 | Msa0129080:CDS |
| ACAGCAGAAAGAAAGGGTTT+TGG | 0.441429 | 1_3:-58889339 | Msa0129080:CDS |
| CTATTCTCACATGTTGAAGA+AGG | 0.444593 | 1_3:-58890550 | Msa0129080:CDS |
| TCCGTTACCCAGTCCAGGCT+TGG | 0.447116 | 1_3:+58891104 | None:intergenic |
| GGCAGCAGCAGCCACCGAAC+TGG | 0.447748 | 1_3:-58889318 | Msa0129080:CDS |
| TACAGATATGGAAAAGCTAA+TGG | 0.451831 | 1_3:-58889487 | Msa0129080:CDS |
| GGACAGACTTTAATTTATAA+CGG | 0.452106 | 1_3:+58887210 | None:intergenic |
| TATATCTCTCAATGAGCATA+AGG | 0.453173 | 1_3:-58890623 | Msa0129080:CDS |
| TTGATTCGTGAGAGTGGTGG+GGG | 0.453706 | 1_3:-58890526 | Msa0129080:CDS |
| TTCCTTCCGTTACCCAGTCC+AGG | 0.459170 | 1_3:+58891099 | None:intergenic |
| GTAAAATTCATGATTGCAAT+GGG | 0.461439 | 1_3:+58890970 | None:intergenic |
| CATCAGATAGAGTTGAAATC+AGG | 0.463046 | 1_3:+58886362 | None:intergenic |
| ATCGTTCACAGAATCTGTTC+CGG | 0.465982 | 1_3:-58892412 | Msa0129080:CDS |
| TTAAAGACTTCGGCGAAGAA+TGG | 0.467001 | 1_3:-58892303 | Msa0129080:CDS |
| CTGAGGAATCGCCACATTCA+GGG | 0.467227 | 1_3:+58890720 | None:intergenic |
| TTTAAGAGAGATTTCGATGC+TGG | 0.469837 | 1_3:+58892321 | None:intergenic |
| CATTTCACCAAACAGCTTCA+AGG | 0.471334 | 1_3:-58892254 | Msa0129080:intron |
| CTGCTGTGGTTGATGCCATC+AGG | 0.472176 | 1_3:+58890121 | None:intergenic |
| AGAGCGCACAAAACTTTAAA+GGG | 0.476324 | 1_3:-58890478 | Msa0129080:CDS |
| CTCACCTAAGCAGAGGTTGT+TGG | 0.476645 | 1_3:+58888676 | None:intergenic |
| TAATCATTCCGGTGTTCTTG+TGG | 0.477100 | 1_3:-58891990 | Msa0129080:CDS |
| CAATACTGCTAGTATTTCTC+GGG | 0.477701 | 1_3:-58890677 | Msa0129080:CDS |
| TGTCGATCATCAATTATGAT+TGG | 0.479343 | 1_3:-58886238 | Msa0129080:CDS |
| TGGTTTCAAGTCACCGATAA+CGG | 0.480127 | 1_3:-58892283 | Msa0129080:CDS |
| CGTAAAATTCATGATTGCAA+TGG | 0.483954 | 1_3:+58890969 | None:intergenic |
| GTTGATTCGTGAGAGTGGTG+GGG | 0.490939 | 1_3:-58890527 | Msa0129080:CDS |
| ATCATCAAACCAATCGCAAA+AGG | 0.493056 | 1_3:-58892436 | Msa0129080:CDS |
| ACATTGAACAGCAGAAAGAA+AGG | 0.494491 | 1_3:-58889346 | Msa0129080:CDS |
| GGGTTGATTCGTGAGAGTGG+TGG | 0.494804 | 1_3:-58890529 | Msa0129080:CDS |
| CCTGAATGTGGCGATTCCTC+AGG | 0.494938 | 1_3:-58890719 | Msa0129080:CDS |
| GCATATGCCCTTATAGCAAA+AGG | 0.495988 | 1_3:-58891306 | Msa0129080:CDS |
| CATGGAATTGTCCTCATGGC+AGG | 0.498761 | 1_3:-58886007 | Msa0129080:CDS |
| GAATGGATTTACTTTGGAAG+AGG | 0.499091 | 1_3:-58887255 | Msa0129080:CDS |
| TGAACCAACAACCTCTGCTT+AGG | 0.499577 | 1_3:-58888680 | Msa0129080:intron |
| GATAACATCATAACAGTGCT+TGG | 0.500424 | 1_3:-58891201 | Msa0129080:CDS |
| GGATCAAGATTTATTCATTG+TGG | 0.501006 | 1_3:-58888912 | Msa0129080:CDS |
| GATTTCGATGCTGGTGGCGC+CGG | 0.501956 | 1_3:+58892330 | None:intergenic |
| AACATTGCACGAACTCTTGG+AGG | 0.503231 | 1_3:+58886274 | None:intergenic |
| TTAGATTCTCCCAAGTCCTC+TGG | 0.504018 | 1_3:-58889598 | Msa0129080:CDS |
| ACTTGACGAAAATTCATAAG+AGG | 0.505723 | 1_3:-58885962 | Msa0129080:CDS |
| TCTCAAGGACAGTTGTGAGT+GGG | 0.510002 | 1_3:-58890393 | Msa0129080:CDS |
| ATGGAAAAGCTAATGGCAAA+AGG | 0.512412 | 1_3:-58889480 | Msa0129080:intron |
| TTGGTTTCAGTATTTACTTG+TGG | 0.514585 | 1_3:+58890232 | None:intergenic |
| CTCAAGGACAGTTGTGAGTG+GGG | 0.515053 | 1_3:-58890392 | Msa0129080:CDS |
| TTGATGATTTGCGATTCAAT+CGG | 0.515545 | 1_3:+58892451 | None:intergenic |
| GAGGTCAGAATTAACAATGC+AGG | 0.518258 | 1_3:-58885943 | Msa0129080:CDS |
| AAGCAACTATTTCTTCCTCA+GGG | 0.518792 | 1_3:+58888368 | None:intergenic |
| GGAGCTTGATTTCTAAGGAC+AGG | 0.519756 | 1_3:+58890253 | None:intergenic |
| ATGCTGTCAATGAATTTATG+TGG | 0.520548 | 1_3:-58890816 | Msa0129080:CDS |
| TTTAATTTATAACGGCATCC+AGG | 0.521120 | 1_3:+58887218 | None:intergenic |
| GTCTCAAGGACAGTTGTGAG+TGG | 0.522054 | 1_3:-58890394 | Msa0129080:CDS |
| AATTGATGATCGACATGCTC+GGG | 0.528848 | 1_3:+58886246 | None:intergenic |
| TCCAAGAGTTCGTGCAATGT+TGG | 0.531112 | 1_3:-58886272 | Msa0129080:CDS |
| TCCAAGCCTGGACTGGGTAA+CGG | 0.532883 | 1_3:-58891105 | Msa0129080:CDS |
| CATTGAACAGCAGAAAGAAA+GGG | 0.533665 | 1_3:-58889345 | Msa0129080:CDS |
| ACGTAAGGAATATGGAAAGC+TGG | 0.534231 | 1_3:-58891870 | Msa0129080:CDS |
| ATCGCCACATTCAGGGATGC+CGG | 0.534608 | 1_3:+58890727 | None:intergenic |
| CTATCTGATGGTGATGGTCA+TGG | 0.537313 | 1_3:-58886349 | Msa0129080:CDS |
| GAACAATCTTTCCAGTTCGG+TGG | 0.538298 | 1_3:+58889307 | None:intergenic |
| TCACAACTGTCCTTGAGACC+AGG | 0.539057 | 1_3:+58890398 | None:intergenic |
| AAGGACAGGCACTTCAGATA+AGG | 0.540336 | 1_3:+58890267 | None:intergenic |
| GGAATACTTCAGCAGAATGA+AGG | 0.543403 | 1_3:-58889279 | Msa0129080:intron |
| TTGAAAAGAAAATTGCATGT+TGG | 0.544226 | 1_3:+58889561 | None:intergenic |
| TCAACTAAATGCCGCATGGT+TGG | 0.546469 | 1_3:+58885984 | None:intergenic |
| AACACCATGTTTGGAGTCGA+AGG | 0.548138 | 1_3:-58887176 | Msa0129080:intron |
| AACGAGAACAGTGAATGAAC+CGG | 0.548570 | 1_3:-58892032 | Msa0129080:CDS |
| TTGTTGTAAGCCCTCTCTAA+GGG | 0.551985 | 1_3:+58890864 | None:intergenic |
| GAAGGGTTGATTCGTGAGAG+TGG | 0.553809 | 1_3:-58890532 | Msa0129080:CDS |
| AATGCTTCTGAATCTGATGA+TGG | 0.555834 | 1_3:-58890577 | Msa0129080:CDS |
| GACGAGTTCTTTAACGGCGG+AGG | 0.557460 | 1_3:+58892369 | None:intergenic |
| TTGGGAGAATCTAATCGTGC+AGG | 0.560739 | 1_3:+58889607 | None:intergenic |
| CAAGTCACCGATAACGGTTG+CGG | 0.561953 | 1_3:-58892277 | Msa0129080:CDS |
| ATCAAGCTACCCTGGTCTCA+AGG | 0.562398 | 1_3:-58890408 | Msa0129080:CDS |
| TAACGGCGGAGGAGAGGTCG+AGG | 0.563344 | 1_3:+58892380 | None:intergenic |
| AAGAGAGATTTCGATGCTGG+TGG | 0.566861 | 1_3:+58892324 | None:intergenic |
| CTCAGATATACATAATGACA+TGG | 0.567030 | 1_3:+58891152 | None:intergenic |
| ATCTTCTGACCAGAGGACTT+GGG | 0.570934 | 1_3:+58889589 | None:intergenic |
| TAATTGATGATCGACATGCT+CGG | 0.574476 | 1_3:+58886245 | None:intergenic |
| TAAGAAGCAAAGAGTTTAAG+CGG | 0.579709 | 1_3:-58891898 | Msa0129080:CDS |
| TCACCATGGAATTGTCCTCA+TGG | 0.580634 | 1_3:-58886011 | Msa0129080:CDS |
| TTATTGCAAGCCCTTAGAGA+GGG | 0.581606 | 1_3:-58890874 | Msa0129080:CDS |
| TGAGTTCTCTTTGTGCTTTG+GGG | 0.584399 | 1_3:-58892069 | Msa0129080:CDS |
| TTCGACGAGTTCTTTAACGG+CGG | 0.588864 | 1_3:+58892366 | None:intergenic |
| TATTCTCACATGTTGAAGAA+GGG | 0.589142 | 1_3:-58890549 | Msa0129080:CDS |
| ATTATGATTGGTGATGCACT+TGG | 0.592485 | 1_3:-58886226 | Msa0129080:CDS |
| GTTTAAGCGGAATATACGTA+AGG | 0.594722 | 1_3:-58891885 | Msa0129080:CDS |
| ACAAATTGGAACGACTGTGA+CGG | 0.594875 | 1_3:-58891948 | Msa0129080:CDS |
| TCAAGGACAGTTGTGAGTGG+GGG | 0.595006 | 1_3:-58890391 | Msa0129080:CDS |
| GAGGATCTAAATGCACCACC+TGG | 0.595531 | 1_3:-58887236 | Msa0129080:CDS |
| CTGATTTCAACTCTATCTGA+TGG | 0.597097 | 1_3:-58886361 | Msa0129080:CDS |
| ACTGGAAAGATTGTTCAAGA+AGG | 0.599565 | 1_3:-58889300 | Msa0129080:CDS |
| AATAGTTGCTTCAATTCACA+TGG | 0.600812 | 1_3:-58888356 | Msa0129080:CDS |
| TTGCAGCAACGTAATCCTGA+TGG | 0.603672 | 1_3:-58890136 | Msa0129080:CDS |
| GAAATCTCTCTTAAAGACTT+CGG | 0.605620 | 1_3:-58892313 | Msa0129080:CDS |
| GAGGTCGAGGATGACTTGAC+CGG | 0.606410 | 1_3:+58892393 | None:intergenic |
| ACTTTAAAGGGTGACAAGAG+TGG | 0.606920 | 1_3:-58890466 | Msa0129080:CDS |
| GTTCTTTAACGGCGGAGGAG+AGG | 0.606990 | 1_3:+58892374 | None:intergenic |
| TCAACTCTATCTGATGGTGA+TGG | 0.607257 | 1_3:-58886355 | Msa0129080:CDS |
| TCATTCCGGTGTTCTTGTGG+CGG | 0.607818 | 1_3:-58891987 | Msa0129080:CDS |
| TGGAAGAAATGAAATGCAGA+AGG | 0.612549 | 1_3:-58886206 | Msa0129080:intron |
| CACAACTGTCCTTGAGACCA+GGG | 0.613211 | 1_3:+58890399 | None:intergenic |
| TCTACCTTCGACTCCAAACA+TGG | 0.613546 | 1_3:+58887172 | None:intergenic |
| CTTATTGCAAGCCCTTAGAG+AGG | 0.613621 | 1_3:-58890875 | Msa0129080:CDS |
| TTTGCGCAATCAAGCTACCC+TGG | 0.613771 | 1_3:-58890416 | Msa0129080:CDS |
| GCAGGCGATGAACAAATTGG+AGG | 0.613983 | 1_3:+58889625 | None:intergenic |
| TGGAGGGCAGACTGAATCTG+AGG | 0.614764 | 1_3:+58886291 | None:intergenic |
| GTCGAAAATAGCTTAGACGC+CGG | 0.617734 | 1_3:-58892349 | Msa0129080:CDS |
| AATAATTCTGACCGCAACAG+TGG | 0.621125 | 1_3:-58890649 | Msa0129080:CDS |
| AGCCTGGACTGGGTAACGGA+AGG | 0.623995 | 1_3:-58891101 | Msa0129080:CDS |
| CAGGCGATGAACAAATTGGA+GGG | 0.629188 | 1_3:+58889626 | None:intergenic |
| CTGCCATGAGGACAATTCCA+TGG | 0.639214 | 1_3:+58886008 | None:intergenic |
| ACATTGCACGAACTCTTGGA+GGG | 0.639683 | 1_3:+58886275 | None:intergenic |
| CAAGTCAACTAAATGCCGCA+TGG | 0.640175 | 1_3:+58885980 | None:intergenic |
| GAAACCGGCATCCCTGAATG+TGG | 0.644771 | 1_3:-58890731 | Msa0129080:CDS |
| ATAAGTTCTCACCTAAGCAG+AGG | 0.645938 | 1_3:+58888669 | None:intergenic |
| TACTGACAGAGAACCTAACA+TGG | 0.647355 | 1_3:-58890068 | Msa0129080:intron |
| TCAGATATACATAATGACAT+GGG | 0.650966 | 1_3:+58891153 | None:intergenic |
| AGCAACTATTTCTTCCTCAG+GGG | 0.653963 | 1_3:+58888369 | None:intergenic |
| TCTGTGGTACTTAAAACCCA+AGG | 0.654508 | 1_3:-58891240 | Msa0129080:CDS |
| GGAGAATATCTTCTGACCAG+AGG | 0.658458 | 1_3:+58889582 | None:intergenic |
| CGCATGGTTGGCCTGCCATG+AGG | 0.658661 | 1_3:+58885996 | None:intergenic |
| CTCATGGCAGGCCAACCATG+CGG | 0.662792 | 1_3:-58885995 | Msa0129080:CDS |
| AATTTATAACGGCATCCAGG+TGG | 0.663899 | 1_3:+58887221 | None:intergenic |
| GAGATATACTACCACTGTTG+CGG | 0.665026 | 1_3:+58890638 | None:intergenic |
| TCAGTATAATGCTCTTCCTG+AGG | 0.671539 | 1_3:+58890703 | None:intergenic |
| ACAGTGAATTTACACTGCTG+TGG | 0.676981 | 1_3:+58890107 | None:intergenic |
| GATGCCGGTTTCGTTACGAT+AGG | 0.680524 | 1_3:+58890742 | None:intergenic |
| TGGCAGAGCTGAAATCACCA+TGG | 0.715825 | 1_3:-58886025 | Msa0129080:CDS |
| AAGATTGGAGTTATCCCCTG+AGG | 0.743451 | 1_3:-58888383 | Msa0129080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAGAATATTAATAATGT+GGG | - | chr1_3:58886732-58886751 | Msa0129080:intron | 10.0% |
| !!! | CATTTAGAATATTAATAATG+TGG | - | chr1_3:58886731-58886750 | Msa0129080:intron | 15.0% |
| !!! | TTTAGAATATTAATAATGTG+GGG | - | chr1_3:58886733-58886752 | Msa0129080:intron | 15.0% |
| !!! | TATTACTTTCTACAATTTTA+AGG | - | chr1_3:58886766-58886785 | Msa0129080:intron | 15.0% |
| !!! | TAATTTTTTTAGTCACTATA+CGG | - | chr1_3:58888840-58888859 | Msa0129080:intron | 15.0% |
| !!! | TAAATATGATTTTAGTATGA+TGG | + | chr1_3:58889174-58889193 | None:intergenic | 15.0% |
| !!! | TATATTTAATCTGAAATTGT+AGG | + | chr1_3:58889219-58889238 | None:intergenic | 15.0% |
| !! | TAAATATATCATGTATTCAA+AGG | - | chr1_3:58889231-58889250 | Msa0129080:intron | 15.0% |
| !!! | ATTATCTTTTTGTGTATTTA+AGG | - | chr1_3:58890177-58890196 | Msa0129080:CDS | 15.0% |
| !!! | TTCAATTTTTGCATTTATTT+CGG | - | chr1_3:58891385-58891404 | Msa0129080:intron | 15.0% |
| !! | AATTTATTACACTGAAATAT+TGG | - | chr1_3:58891543-58891562 | Msa0129080:intron | 15.0% |
| !!! | TACAATCTAAAAATAACTTT+TGG | + | chr1_3:58892343-58892362 | None:intergenic | 15.0% |
| !!! | TATTTTTAGATTGTAAGTTA+AGG | - | chr1_3:58892348-58892367 | Msa0129080:CDS | 15.0% |
| !!! | ATTTTTAGATTGTAAGTTAA+GGG | - | chr1_3:58892349-58892368 | Msa0129080:CDS | 15.0% |
| !!! | CTAATACTACATTTTTAAAG+GGG | + | chr1_3:58886018-58886037 | None:intergenic | 20.0% |
| !!! | CCTAATACTACATTTTTAAA+GGG | + | chr1_3:58886019-58886038 | None:intergenic | 20.0% |
| !!! | CCTTTAAAAATGTAGTATTA+GGG | - | chr1_3:58886017-58886036 | Msa0129080:CDS | 20.0% |
| !!! | ATTTTGTTTGAAATGATTTC+AGG | - | chr1_3:58886057-58886076 | Msa0129080:intron | 20.0% |
| !! | AATTTAGGTATTTACTCAAA+TGG | + | chr1_3:58886468-58886487 | None:intergenic | 20.0% |
| !! | ATTTGAGTAAATACCTAAAT+TGG | - | chr1_3:58886467-58886486 | Msa0129080:intron | 20.0% |
| !! | TTAGAATATTAATAATGTGG+GGG | - | chr1_3:58886734-58886753 | Msa0129080:intron | 20.0% |
| !! | AACAAAAAATAAATCCCAAT+AGG | + | chr1_3:58886819-58886838 | None:intergenic | 20.0% |
| !! | TATGATATATTCTTTCTGTT+GGG | - | chr1_3:58886897-58886916 | Msa0129080:intron | 20.0% |
| !!! | AGACAGTATTTTTTTGTAAA+CGG | - | chr1_3:58887170-58887189 | Msa0129080:intron | 20.0% |
| !!! | AAAAATATTTTCCTCTTATC+AGG | + | chr1_3:58887326-58887345 | None:intergenic | 20.0% |
| !!! | ATCATTTTCTGATTTAGTAA+CGG | + | chr1_3:58888400-58888419 | None:intergenic | 20.0% |
| !!! | TATGATTTTCCTACTTTATA+AGG | + | chr1_3:58888800-58888819 | None:intergenic | 20.0% |
| !!! | AAAACATTGATTTGGTTTTA+TGG | + | chr1_3:58889125-58889144 | None:intergenic | 20.0% |
| !!! | TAAAACCAAATCAATGTTTT+TGG | - | chr1_3:58889125-58889144 | Msa0129080:intron | 20.0% |
| !!! | CTTTGATATTATGTTTTAAC+AGG | - | chr1_3:58889261-58889280 | Msa0129080:intron | 20.0% |
| !!! | AAAAAAAACATGATTTGTGA+TGG | - | chr1_3:58889463-58889482 | Msa0129080:intron | 20.0% |
| !! | CTAATAAAAATTGCATATGT+AGG | - | chr1_3:58889825-58889844 | Msa0129080:intron | 20.0% |
| !!! | ATCAATATGTTCATTTTCTA+AGG | + | chr1_3:58890159-58890178 | None:intergenic | 20.0% |
| !! | AAAAACATGCATATGTATAT+TGG | - | chr1_3:58890378-58890397 | Msa0129080:CDS | 20.0% |
| !!! | ATATGTTTGAAATCATTACT+TGG | - | chr1_3:58890408-58890427 | Msa0129080:CDS | 20.0% |
| !! | ATCAAATTCAACAAGTTATT+TGG | + | chr1_3:58890484-58890503 | None:intergenic | 20.0% |
| !!! | TTGATTTCATATGATGTTTT+TGG | - | chr1_3:58890499-58890518 | Msa0129080:CDS | 20.0% |
| !! | ACATTTGCATAATTTATGAA+AGG | - | chr1_3:58890774-58890793 | Msa0129080:CDS | 20.0% |
| !! | ATAGAATCCATAAAATTCAA+AGG | + | chr1_3:58891091-58891110 | None:intergenic | 20.0% |
| !! | GATTAATTTAATGATTCTGT+TGG | - | chr1_3:58891115-58891134 | Msa0129080:CDS | 20.0% |
| !!! | TTCAATTTTTGCATTCATTT+CGG | - | chr1_3:58891221-58891240 | Msa0129080:CDS | 20.0% |
| !!! | AATGTCATTTGATATTTGAT+TGG | - | chr1_3:58891302-58891321 | Msa0129080:CDS | 20.0% |
| !! | TTAGTTGAACAATAAATGTA+AGG | - | chr1_3:58892128-58892147 | Msa0129080:CDS | 20.0% |
| !! | CCCTTTAAAAATGTAGTATT+AGG | - | chr1_3:58886016-58886035 | Msa0129080:CDS | 25.0% |
| !! | CCCTAATACTACATTTTTAA+AGG | + | chr1_3:58886020-58886039 | None:intergenic | 25.0% |
| !! | ACAATTTCAAGTACCAATTT+AGG | + | chr1_3:58886483-58886502 | None:intergenic | 25.0% |
| ! | AATTGGTACTTGAAATTGTA+AGG | - | chr1_3:58886484-58886503 | Msa0129080:intron | 25.0% |
| ! | TGTAATTTCTTAGATCGTTT+AGG | + | chr1_3:58886544-58886563 | None:intergenic | 25.0% |
| ! | GATAACCTATACATACAAAT+CGG | - | chr1_3:58886675-58886694 | Msa0129080:intron | 25.0% |
| ! | TGATTAGCATTATGCAATTT+CGG | - | chr1_3:58886704-58886723 | Msa0129080:intron | 25.0% |
| ! | GTATGATATATTCTTTCTGT+TGG | - | chr1_3:58886896-58886915 | Msa0129080:intron | 25.0% |
| !!! | TTTTAGAGAATCATTTCCTT+GGG | + | chr1_3:58887015-58887034 | None:intergenic | 25.0% |
| ! | TCAGATATACATAATGACAT+GGG | + | chr1_3:58887086-58887105 | None:intergenic | 25.0% |
| ! | GTAAAATTCATGATTGCAAT+GGG | + | chr1_3:58887269-58887288 | None:intergenic | 25.0% |
| !! | CATTGCAATCATGAATTTTA+CGG | - | chr1_3:58887268-58887287 | Msa0129080:intron | 25.0% |
| !!! | TTCAGAAGCATTATTAGAAT+CGG | + | chr1_3:58887651-58887670 | None:intergenic | 25.0% |
| ! | TACAGCAACAAAATTGTTAA+GGG | + | chr1_3:58887918-58887937 | None:intergenic | 25.0% |
| ! | TTACAGCAACAAAATTGTTA+AGG | + | chr1_3:58887919-58887938 | None:intergenic | 25.0% |
| ! | AACAAGATCATATCTTCATT+TGG | - | chr1_3:58888036-58888055 | Msa0129080:intron | 25.0% |
| ! | GCTTAGAAGTTTCATTAATT+TGG | + | chr1_3:58888063-58888082 | None:intergenic | 25.0% |
| !! | TCATTTTCTGATTTAGTAAC+GGG | + | chr1_3:58888399-58888418 | None:intergenic | 25.0% |
| ! | TTGAAAAGAAAATTGCATGT+TGG | + | chr1_3:58888678-58888697 | None:intergenic | 25.0% |
| !!! | TCAATGCTATTTTAGTAAGT+GGG | - | chr1_3:58889054-58889073 | Msa0129080:intron | 25.0% |
| !! | GTATTCCAAAAACATTGATT+TGG | + | chr1_3:58889133-58889152 | None:intergenic | 25.0% |
| !!! | ATTATGTTTTAACAGGTGAT+TGG | - | chr1_3:58889268-58889287 | Msa0129080:intron | 25.0% |
| ! | TTCAATCTTGGATTTATCAT+TGG | - | chr1_3:58889295-58889314 | Msa0129080:CDS | 25.0% |
| ! | TGGATTTATCATTGGTAAAT+TGG | - | chr1_3:58889303-58889322 | Msa0129080:CDS | 25.0% |
| !! | ATATGGATTAATCATTCTAC+AGG | + | chr1_3:58889407-58889426 | None:intergenic | 25.0% |
| ! | AGCAAAAGAATGCATTTATA+TGG | + | chr1_3:58889424-58889443 | None:intergenic | 25.0% |
| ! | GATCATGAACAAATAAAGAA+AGG | + | chr1_3:58889796-58889815 | None:intergenic | 25.0% |
| ! | TCTGACAATAACACAAAATA+TGG | + | chr1_3:58889960-58889979 | None:intergenic | 25.0% |
| ! | AGAAACTATATTTCATCAAC+AGG | - | chr1_3:58889977-58889996 | Msa0129080:intron | 25.0% |
| ! | AAATTCAACAAGTTATTTGG+TGG | + | chr1_3:58890481-58890500 | None:intergenic | 25.0% |
| !! | TTTAATTTCTAATGTGCATG+TGG | + | chr1_3:58890754-58890773 | None:intergenic | 25.0% |
| ! | CATAATTTATGAAAGGTTGT+TGG | - | chr1_3:58890781-58890800 | Msa0129080:CDS | 25.0% |
| ! | AGTGACTGAATCAAATATAA+TGG | + | chr1_3:58890812-58890831 | None:intergenic | 25.0% |
| ! | GCAACTAAAGCATAAAATAT+TGG | + | chr1_3:58890898-58890917 | None:intergenic | 25.0% |
| ! | ATTTGCATTATATCCATTTC+AGG | - | chr1_3:58890956-58890975 | Msa0129080:CDS | 25.0% |
| !! | GGACAGACTTTAATTTATAA+CGG | + | chr1_3:58891029-58891048 | None:intergenic | 25.0% |
| ! | AAATGTTTCAAATAAACCCT+TGG | - | chr1_3:58891636-58891655 | Msa0129080:intron | 25.0% |
| ! | ACATATTTGAATCTTGTGAA+TGG | - | chr1_3:58891689-58891708 | Msa0129080:intron | 25.0% |
| ! | TTGTCTATAACTACCAATTA+TGG | + | chr1_3:58891921-58891940 | None:intergenic | 25.0% |
| ! | AATGCAGGAGTAATTAATTA+TGG | - | chr1_3:58892308-58892327 | Msa0129080:CDS | 25.0% |
| ! | TTGATGATTTGCGATTCAAT+CGG | + | chr1_3:58885788-58885807 | None:intergenic | 30.0% |
| ! | ATTTTCGACGAGTTCTTTAA+CGG | + | chr1_3:58885876-58885895 | None:intergenic | 30.0% |
| GAAATCTCTCTTAAAGACTT+CGG | - | chr1_3:58885923-58885942 | Msa0129080:exon | 30.0% | |
| !! | TTGAAATGATTTCAGGTTCT+TGG | - | chr1_3:58886064-58886083 | Msa0129080:intron | 30.0% |
| CATTTGACGTTTAATCATTC+CGG | - | chr1_3:58886235-58886254 | Msa0129080:CDS | 30.0% | |
| TTAAACTCTTTGCTTCTTAC+AGG | + | chr1_3:58886337-58886356 | None:intergenic | 30.0% | |
| TAAGAAGCAAAGAGTTTAAG+CGG | - | chr1_3:58886338-58886357 | Msa0129080:CDS | 30.0% | |
| TGTAGGACTATAATGACATT+AGG | - | chr1_3:58886598-58886617 | Msa0129080:intron | 30.0% | |
| TAGGAATAGAATGGAGTAAT+TGG | + | chr1_3:58886800-58886819 | None:intergenic | 30.0% | |
| TTACTCCATTCTATTCCTAT+TGG | - | chr1_3:58886801-58886820 | Msa0129080:intron | 30.0% | |
| TACTCCATTCTATTCCTATT+GGG | - | chr1_3:58886802-58886821 | Msa0129080:intron | 30.0% | |
| AAATCCCAATAGGAATAGAA+TGG | + | chr1_3:58886809-58886828 | None:intergenic | 30.0% | |
| CAGTGAAACAGGAATAAAAA+AGG | + | chr1_3:58886863-58886882 | None:intergenic | 30.0% | |
| ATTAACAAACTCAGTGAAAC+AGG | + | chr1_3:58886874-58886893 | None:intergenic | 30.0% | |
| TGGCAAAAATGTAAAATCTG+TGG | - | chr1_3:58886980-58886999 | Msa0129080:intron | 30.0% | |
| !! | CTTTTAGAGAATCATTTCCT+TGG | + | chr1_3:58887016-58887035 | None:intergenic | 30.0% |
| CTCAGATATACATAATGACA+TGG | + | chr1_3:58887087-58887106 | None:intergenic | 30.0% | |
| ! | TTCACAAGTTTTCCGATTTT+TGG | + | chr1_3:58887212-58887231 | None:intergenic | 30.0% |
| CGTAAAATTCATGATTGCAA+TGG | + | chr1_3:58887270-58887289 | None:intergenic | 30.0% | |
| ! | TTGACATCATATGCTTTTGT+TGG | + | chr1_3:58887296-58887315 | None:intergenic | 30.0% |
| AAATTCATTGACAGCATAAG+AGG | + | chr1_3:58887417-58887436 | None:intergenic | 30.0% | |
| ATGCTGTCAATGAATTTATG+TGG | - | chr1_3:58887420-58887439 | Msa0129080:intron | 30.0% | |
| TCAATACTGCTAGTATTTCT+CGG | - | chr1_3:58887558-58887577 | Msa0129080:intron | 30.0% | |
| TATATCTCTCAATGAGCATA+AGG | - | chr1_3:58887613-58887632 | Msa0129080:intron | 30.0% | |
| TATTCTCACATGTTGAAGAA+GGG | - | chr1_3:58887687-58887706 | Msa0129080:intron | 30.0% | |
| TTGGTTTCAGTATTTACTTG+TGG | + | chr1_3:58888007-58888026 | None:intergenic | 30.0% | |
| ! | GAAGATATGATCTTGTTATC+AGG | + | chr1_3:58888033-58888052 | None:intergenic | 30.0% |
| ! | TGCAAATTTTCAATCTCACT+TGG | + | chr1_3:58888085-58888104 | None:intergenic | 30.0% |
| !! | TTTAAGTTGAAGTTCCTTAG+TGG | - | chr1_3:58888369-58888388 | Msa0129080:CDS | 30.0% |
| AGTATGAAACAAAGACAAAG+TGG | + | chr1_3:58888470-58888489 | None:intergenic | 30.0% | |
| TTTATCAGATTGTTGCTAGA+TGG | + | chr1_3:58888563-58888582 | None:intergenic | 30.0% | |
| ! | AAATACTACAGAGCATGTTT+TGG | - | chr1_3:58888580-58888599 | Msa0129080:intron | 30.0% |
| ! | TTTTCCATATCTGTATTTGC+TGG | + | chr1_3:58888744-58888763 | None:intergenic | 30.0% |
| TACAGATATGGAAAAGCTAA+TGG | - | chr1_3:58888749-58888768 | Msa0129080:intron | 30.0% | |
| !!! | CTCAATGCTATTTTAGTAAG+TGG | - | chr1_3:58889053-58889072 | Msa0129080:intron | 30.0% |
| !!! | CAATGCTATTTTAGTAAGTG+GGG | - | chr1_3:58889055-58889074 | Msa0129080:intron | 30.0% |
| CTTAGAAAAACCTAACAACT+TGG | + | chr1_3:58889090-58889109 | None:intergenic | 30.0% | |
| !!! | ACATTGATTTGGTTTTATGG+TGG | + | chr1_3:58889122-58889141 | None:intergenic | 30.0% |
| !! | AGTATGATGGATTAGATATG+CGG | + | chr1_3:58889161-58889180 | None:intergenic | 30.0% |
| GGATCAAGATTTATTCATTG+TGG | - | chr1_3:58889324-58889343 | Msa0129080:CDS | 30.0% | |
| AGATTTATTCATTGTGGATC+AGG | - | chr1_3:58889330-58889349 | Msa0129080:CDS | 30.0% | |
| CTGTAGTTTCAAAAACATAG+TGG | + | chr1_3:58889362-58889381 | None:intergenic | 30.0% | |
| TTGGTTCAATATGGTTGATT+GGG | + | chr1_3:58889544-58889563 | None:intergenic | 30.0% | |
| TGTTGAGTTCAAAGTTACAA+AGG | - | chr1_3:58889722-58889741 | Msa0129080:CDS | 30.0% | |
| AATAGTTGCTTCAATTCACA+TGG | - | chr1_3:58889880-58889899 | Msa0129080:intron | 30.0% | |
| ATATCACCGCTTGATAAATA+TGG | + | chr1_3:58889928-58889947 | None:intergenic | 30.0% | |
| GAAAGTGAATAAAGAGATCA+TGG | + | chr1_3:58890082-58890101 | None:intergenic | 30.0% | |
| ATTATCAATTAAAGCAGCAC+AGG | + | chr1_3:58890311-58890330 | None:intergenic | 30.0% | |
| CAACTAGTTGAACAATTTGA+GGG | + | chr1_3:58890676-58890695 | None:intergenic | 30.0% | |
| ACAACTAGTTGAACAATTTG+AGG | + | chr1_3:58890677-58890696 | None:intergenic | 30.0% | |
| TAAGCTAATGTCTTCAACAA+TGG | - | chr1_3:58890703-58890722 | Msa0129080:CDS | 30.0% | |
| !!! | AGTAAGATACTTTTTTTCCG+TGG | - | chr1_3:58890837-58890856 | Msa0129080:CDS | 30.0% |
| !!! | GTAAGATACTTTTTTTCCGT+GGG | - | chr1_3:58890838-58890857 | Msa0129080:CDS | 30.0% |
| !!! | TAAGATACTTTTTTTCCGTG+GGG | - | chr1_3:58890839-58890858 | Msa0129080:CDS | 30.0% |
| !! | AATTTTAAAGATAACCCCCA+CGG | + | chr1_3:58890857-58890876 | None:intergenic | 30.0% |
| !!! | TGCGTTTTTTTGCATCTTTA+TGG | - | chr1_3:58890915-58890934 | Msa0129080:CDS | 30.0% |
| TATATCCATTTCAGGAAGAA+TGG | - | chr1_3:58890964-58890983 | Msa0129080:CDS | 30.0% | |
| TAAATCCATTCTTCCTGAAA+TGG | + | chr1_3:58890972-58890991 | None:intergenic | 30.0% | |
| ! | TTTAATTTATAACGGCATCC+AGG | + | chr1_3:58891021-58891040 | None:intergenic | 30.0% |
| !! | AACATGGTGTTTTTACTGTA+GGG | + | chr1_3:58891051-58891070 | None:intergenic | 30.0% |
| !! | AAACATGGTGTTTTTACTGT+AGG | + | chr1_3:58891052-58891071 | None:intergenic | 30.0% |
| TACAGTAAAAACACCATGTT+TGG | - | chr1_3:58891051-58891070 | Msa0129080:CDS | 30.0% | |
| ! | GGTAGAACCTTTGAATTTTA+TGG | - | chr1_3:58891081-58891100 | Msa0129080:CDS | 30.0% |
| ! | TATGTGATTCTTTTGTGCAT+TGG | - | chr1_3:58891326-58891345 | Msa0129080:intron | 30.0% |
| TTTGCATTTATTTCGGAAGA+TGG | - | chr1_3:58891392-58891411 | Msa0129080:intron | 30.0% | |
| TTGATACAAGGTTATGTGAA+TGG | + | chr1_3:58891473-58891492 | None:intergenic | 30.0% | |
| ATAACCTTGTATCAAGATGA+TGG | - | chr1_3:58891478-58891497 | Msa0129080:intron | 30.0% | |
| ! | ATCAAGATGATGGTAGAAAA+TGG | - | chr1_3:58891488-58891507 | Msa0129080:intron | 30.0% |
| GAAATTCTGTATTAGAAACG+AGG | - | chr1_3:58891565-58891584 | Msa0129080:intron | 30.0% | |
| ! | CTCATTTCTTATTTCGTTTC+TGG | + | chr1_3:58891615-58891634 | None:intergenic | 30.0% |
| TGTCGATCATCAATTATGAT+TGG | - | chr1_3:58891998-58892017 | Msa0129080:CDS | 30.0% | |
| TGTGCACGTGTTATAAAATA+AGG | + | chr1_3:58892090-58892109 | None:intergenic | 30.0% | |
| ACTAAACCAGATACTTGTAA+AGG | + | chr1_3:58892113-58892132 | None:intergenic | 30.0% | |
| ACTTGACGAAAATTCATAAG+AGG | - | chr1_3:58892274-58892293 | Msa0129080:CDS | 30.0% | |
| ! | CTCTCAAACTTCACATTTTA+TGG | - | chr1_3:58892419-58892438 | Msa0129080:CDS | 30.0% |
| ! | TCAAACTTCACATTTTATGG+AGG | - | chr1_3:58892422-58892441 | Msa0129080:CDS | 30.0% |
| ! | CAAACTTCACATTTTATGGA+GGG | - | chr1_3:58892423-58892442 | Msa0129080:CDS | 30.0% |
| ATCATCAAACCAATCGCAAA+AGG | - | chr1_3:58885800-58885819 | Msa0129080:three_prime_UTR | 35.0% | |
| TTTAAGAGAGATTTCGATGC+TGG | + | chr1_3:58885918-58885937 | None:intergenic | 35.0% | |
| TAGAATACCTTGAAGCTGTT+TGG | + | chr1_3:58885992-58886011 | None:intergenic | 35.0% | |
| !! | CTGACTACTTTTGGATTTAG+AGG | - | chr1_3:58886136-58886155 | Msa0129080:intron | 35.0% |
| ! | TACTTTTGGATTTAGAGGTG+AGG | - | chr1_3:58886141-58886160 | Msa0129080:intron | 35.0% |
| TTGAGTTCTCTTTGTGCTTT+GGG | - | chr1_3:58886166-58886185 | Msa0129080:intron | 35.0% | |
| AAGAAAATTGCGCGACAAAT+TGG | - | chr1_3:58886274-58886293 | Msa0129080:CDS | 35.0% | |
| GTTTAAGCGGAATATACGTA+AGG | - | chr1_3:58886351-58886370 | Msa0129080:CDS | 35.0% | |
| CGGAATATACGTAAGGAATA+TGG | - | chr1_3:58886358-58886377 | Msa0129080:CDS | 35.0% | |
| GTCCTACAAATAACAACGTA+GGG | + | chr1_3:58886586-58886605 | None:intergenic | 35.0% | |
| AGTCCTACAAATAACAACGT+AGG | + | chr1_3:58886587-58886606 | None:intergenic | 35.0% | |
| GGACTATAATGACATTAGGT+TGG | - | chr1_3:58886602-58886621 | Msa0129080:intron | 35.0% | |
| !! | GACATTAGGTTGGTAATATC+AGG | - | chr1_3:58886612-58886631 | Msa0129080:intron | 35.0% |
| !! | CTTCACCGATTTGTATGTAT+AGG | + | chr1_3:58886683-58886702 | None:intergenic | 35.0% |
| GATAACATCATAACAGTGCT+TGG | - | chr1_3:58887035-58887054 | Msa0129080:intron | 35.0% | |
| TCAATGTAACTCCTGATAAG+AGG | - | chr1_3:58887312-58887331 | Msa0129080:intron | 35.0% | |
| ! | CTCAAAACAGTCTTCTTTTG+CGG | + | chr1_3:58887450-58887469 | None:intergenic | 35.0% |
| CAATACTGCTAGTATTTCTC+GGG | - | chr1_3:58887559-58887578 | Msa0129080:intron | 35.0% | |
| AATGCTTCTGAATCTGATGA+TGG | - | chr1_3:58887659-58887678 | Msa0129080:intron | 35.0% | |
| CTATTCTCACATGTTGAAGA+AGG | - | chr1_3:58887686-58887705 | Msa0129080:intron | 35.0% | |
| AGAGCGCACAAAACTTTAAA+GGG | - | chr1_3:58887758-58887777 | Msa0129080:intron | 35.0% | |
| ! | TGATCTTGTTATCAGGTCAT+TGG | + | chr1_3:58888026-58888045 | None:intergenic | 35.0% |
| TAGCGATTGAAACCAATCTT+CGG | + | chr1_3:58888218-58888237 | None:intergenic | 35.0% | |
| !! | CTTTTCAAGACCTTAAGAGT+AGG | - | chr1_3:58888690-58888709 | Msa0129080:CDS | 35.0% |
| CAATCCAGCAAATACAGATA+TGG | - | chr1_3:58888737-58888756 | Msa0129080:intron | 35.0% | |
| ATGGAAAAGCTAATGGCAAA+AGG | - | chr1_3:58888756-58888775 | Msa0129080:intron | 35.0% | |
| TCGTACTCTCCTTATAAAGT+AGG | - | chr1_3:58888788-58888807 | Msa0129080:intron | 35.0% | |
| ACATTGAACAGCAGAAAGAA+AGG | - | chr1_3:58888890-58888909 | Msa0129080:intron | 35.0% | |
| CATTGAACAGCAGAAAGAAA+GGG | - | chr1_3:58888891-58888910 | Msa0129080:intron | 35.0% | |
| CTTGAACAATCTTTCCAGTT+CGG | + | chr1_3:58888935-58888954 | None:intergenic | 35.0% | |
| ACTGGAAAGATTGTTCAAGA+AGG | - | chr1_3:58888936-58888955 | Msa0129080:CDS | 35.0% | |
| !! | TAGCATTGAGTATTGACATC+TGG | + | chr1_3:58889043-58889062 | None:intergenic | 35.0% |
| GTGATTGGACAATTCAATCT+TGG | - | chr1_3:58889283-58889302 | Msa0129080:CDS | 35.0% | |
| TTAATCATTCTACAGGATGG+TGG | + | chr1_3:58889400-58889419 | None:intergenic | 35.0% | |
| GGATTAATCATTCTACAGGA+TGG | + | chr1_3:58889403-58889422 | None:intergenic | 35.0% | |
| ! | GTTGGTTCAATATGGTTGAT+TGG | + | chr1_3:58889545-58889564 | None:intergenic | 35.0% |
| CAATAATCACATGGTAAAGC+TGG | - | chr1_3:58889649-58889668 | Msa0129080:CDS | 35.0% | |
| ! | CTTATTCTGCTGCAAAGTTT+TGG | - | chr1_3:58889684-58889703 | Msa0129080:CDS | 35.0% |
| CATATGTAGGCCAATAAGAT+TGG | - | chr1_3:58889838-58889857 | Msa0129080:intron | 35.0% | |
| ! | AAGCAACTATTTCTTCCTCA+GGG | + | chr1_3:58889871-58889890 | None:intergenic | 35.0% |
| CAATTCACATGGACATAATC+AGG | - | chr1_3:58889891-58889910 | Msa0129080:intron | 35.0% | |
| CTAGAGCCATATTTATCAAG+CGG | - | chr1_3:58889919-58889938 | Msa0129080:intron | 35.0% | |
| AATTCATGACTGGTGCATTA+GGG | + | chr1_3:58890229-58890248 | None:intergenic | 35.0% | |
| AAATTCATGACTGGTGCATT+AGG | + | chr1_3:58890230-58890249 | None:intergenic | 35.0% | |
| ! | ATGTCAAGTTTTGCGTAGTA+GGG | + | chr1_3:58890253-58890272 | None:intergenic | 35.0% |
| TCTGCATCTTCACATGATTA+AGG | + | chr1_3:58890436-58890455 | None:intergenic | 35.0% | |
| AAGTTCAAACTTCACAGCTT+TGG | + | chr1_3:58890648-58890667 | None:intergenic | 35.0% | |
| ! | TGTTGAAGACATTAGCTTAC+AGG | + | chr1_3:58890702-58890721 | None:intergenic | 35.0% |
| !!! | AAGATACTTTTTTTCCGTGG+GGG | - | chr1_3:58890840-58890859 | Msa0129080:CDS | 35.0% |
| ! | CAGGAAGAATGGATTTACTT+TGG | - | chr1_3:58890975-58890994 | Msa0129080:CDS | 35.0% |
| ! | GAATGGATTTACTTTGGAAG+AGG | - | chr1_3:58890981-58891000 | Msa0129080:CDS | 35.0% |
| !! | ACATGGTGTTTTTACTGTAG+GGG | + | chr1_3:58891050-58891069 | None:intergenic | 35.0% |
| TATATAGTCATGATCGACCA+AGG | - | chr1_3:58891140-58891159 | Msa0129080:CDS | 35.0% | |
| ATATAGTCATGATCGACCAA+GGG | - | chr1_3:58891141-58891160 | Msa0129080:CDS | 35.0% | |
| GGAAAACATATTGTGTGCAT+TGG | - | chr1_3:58891162-58891181 | Msa0129080:CDS | 35.0% | |
| TTCATTTCGGAAGATGATTC+AGG | - | chr1_3:58891234-58891253 | Msa0129080:CDS | 35.0% | |
| !! | GGAAAGTCTATTGACTTACA+CGG | - | chr1_3:58891264-58891283 | Msa0129080:CDS | 35.0% |
| TTTATTTCGGAAGATGGTTC+AGG | - | chr1_3:58891398-58891417 | Msa0129080:intron | 35.0% | |
| TCTACCATCATCTTGATACA+AGG | + | chr1_3:58891485-58891504 | None:intergenic | 35.0% | |
| TGTGTTTCTTGTAACATCAC+TGG | + | chr1_3:58891592-58891611 | None:intergenic | 35.0% | |
| CTAAGCTTGGATCTAAAGAT+TGG | - | chr1_3:58891661-58891680 | Msa0129080:intron | 35.0% | |
| TTTGAATCTTGTGAATGGCA+AGG | - | chr1_3:58891694-58891713 | Msa0129080:intron | 35.0% | |
| TTGAATCTTGTGAATGGCAA+GGG | - | chr1_3:58891695-58891714 | Msa0129080:intron | 35.0% | |
| TGAATCAATTGCGCATAGAA+TGG | - | chr1_3:58891765-58891784 | Msa0129080:intron | 35.0% | |
| ! | TTTTCTCCCAACAGATGTTA+AGG | - | chr1_3:58891850-58891869 | Msa0129080:intron | 35.0% |
| CATCAGATAGAGTTGAAATC+AGG | + | chr1_3:58891877-58891896 | None:intergenic | 35.0% | |
| CTGATTTCAACTCTATCTGA+TGG | - | chr1_3:58891875-58891894 | Msa0129080:CDS | 35.0% | |
| CATGGAGAATGTTCCATAAT+TGG | - | chr1_3:58891905-58891924 | Msa0129080:CDS | 35.0% | |
| ! | TAATTGATGATCGACATGCT+CGG | + | chr1_3:58891994-58892013 | None:intergenic | 35.0% |
| !! | ATTATGATTGGTGATGCACT+TGG | - | chr1_3:58892010-58892029 | Msa0129080:CDS | 35.0% |
| TGGAAGAAATGAAATGCAGA+AGG | - | chr1_3:58892030-58892049 | Msa0129080:CDS | 35.0% | |
| GTGTTATAAAATAAGGCGAG+GGG | + | chr1_3:58892083-58892102 | None:intergenic | 35.0% | |
| CGTGTTATAAAATAAGGCGA+GGG | + | chr1_3:58892084-58892103 | None:intergenic | 35.0% | |
| ACGTGTTATAAAATAAGGCG+AGG | + | chr1_3:58892085-58892104 | None:intergenic | 35.0% | |
| GTTTCAGATACTTGAGCATT+TGG | - | chr1_3:58892191-58892210 | Msa0129080:intron | 35.0% | |
| ! | TGAACGATTCCTTTTGCGAT+TGG | + | chr1_3:58885812-58885831 | None:intergenic | 40.0% |
| ATCGTTCACAGAATCTGTTC+CGG | - | chr1_3:58885824-58885843 | Msa0129080:three_prime_UTR | 40.0% | |
| TTAAAGACTTCGGCGAAGAA+TGG | - | chr1_3:58885933-58885952 | Msa0129080:exon | 40.0% | |
| ! | TGGTTTCAAGTCACCGATAA+CGG | - | chr1_3:58885953-58885972 | Msa0129080:CDS | 40.0% |
| CATTTCACCAAACAGCTTCA+AGG | - | chr1_3:58885982-58886001 | Msa0129080:CDS | 40.0% | |
| ! | CTTCAGTCTCTGACTACTTT+TGG | - | chr1_3:58886127-58886146 | Msa0129080:intron | 40.0% |
| GTTGAGTTCTCTTTGTGCTT+TGG | - | chr1_3:58886165-58886184 | Msa0129080:intron | 40.0% | |
| TGAGTTCTCTTTGTGCTTTG+GGG | - | chr1_3:58886167-58886186 | Msa0129080:intron | 40.0% | |
| AACGAGAACAGTGAATGAAC+CGG | - | chr1_3:58886204-58886223 | Msa0129080:intron | 40.0% | |
| TAATCATTCCGGTGTTCTTG+TGG | - | chr1_3:58886246-58886265 | Msa0129080:CDS | 40.0% | |
| ACAAATTGGAACGACTGTGA+CGG | - | chr1_3:58886288-58886307 | Msa0129080:CDS | 40.0% | |
| ACGTAAGGAATATGGAAAGC+TGG | - | chr1_3:58886366-58886385 | Msa0129080:CDS | 40.0% | |
| !! | GTCCCTACGTTGTTATTTGT+AGG | - | chr1_3:58886581-58886600 | Msa0129080:intron | 40.0% |
| GCATATGCCCTTATAGCAAA+AGG | - | chr1_3:58886930-58886949 | Msa0129080:intron | 40.0% | |
| !! | TCGAACGCCTTTTGCTATAA+GGG | + | chr1_3:58886940-58886959 | None:intergenic | 40.0% |
| !! | ATCGAACGCCTTTTGCTATA+AGG | + | chr1_3:58886941-58886960 | None:intergenic | 40.0% |
| !! | ATAGCAAAAGGCGTTCGATT+TGG | - | chr1_3:58886942-58886961 | Msa0129080:intron | 40.0% |
| TCTGTGGTACTTAAAACCCA+AGG | - | chr1_3:58886996-58887015 | Msa0129080:intron | 40.0% | |
| CATGAACACTTTCAACTGCT+TGG | - | chr1_3:58887058-58887077 | Msa0129080:intron | 40.0% | |
| ! | TTTTGTAAACGGTAGACCAG+TGG | - | chr1_3:58887181-58887200 | Msa0129080:CDS | 40.0% |
| CCAGTGGATATGCCAAAAAT+CGG | - | chr1_3:58887197-58887216 | Msa0129080:CDS | 40.0% | |
| TTATTGCAAGCCCTTAGAGA+GGG | - | chr1_3:58887362-58887381 | Msa0129080:intron | 40.0% | |
| TTGTTGTAAGCCCTCTCTAA+GGG | + | chr1_3:58887375-58887394 | None:intergenic | 40.0% | |
| ! | TTTGTTGTAAGCCCTCTCTA+AGG | + | chr1_3:58887376-58887395 | None:intergenic | 40.0% |
| !! | ACAGCATAAGAGGCATTATC+AGG | + | chr1_3:58887407-58887426 | None:intergenic | 40.0% |
| TCAGTATAATGCTCTTCCTG+AGG | + | chr1_3:58887536-58887555 | None:intergenic | 40.0% | |
| AATAATTCTGACCGCAACAG+TGG | - | chr1_3:58887587-58887606 | Msa0129080:intron | 40.0% | |
| GAGATATACTACCACTGTTG+CGG | + | chr1_3:58887601-58887620 | None:intergenic | 40.0% | |
| CAGAGCGCACAAAACTTTAA+AGG | - | chr1_3:58887757-58887776 | Msa0129080:intron | 40.0% | |
| ! | ACTTTAAAGGGTGACAAGAG+TGG | - | chr1_3:58887770-58887789 | Msa0129080:intron | 40.0% |
| CTTGTGGAGCTTGATTTCTA+AGG | + | chr1_3:58887991-58888010 | None:intergenic | 40.0% | |
| ACAGTGAATTTACACTGCTG+TGG | + | chr1_3:58888132-58888151 | None:intergenic | 40.0% | |
| TACTGACAGAGAACCTAACA+TGG | - | chr1_3:58888168-58888187 | Msa0129080:intron | 40.0% | |
| TCTTCTCTCTCCTACTCTTA+AGG | + | chr1_3:58888703-58888722 | None:intergenic | 40.0% | |
| GAGAGAGAAGAGACTTTCTT+TGG | - | chr1_3:58888712-58888731 | Msa0129080:CDS | 40.0% | |
| TCTTTCTGCTGTTCAATGTC+TGG | + | chr1_3:58888889-58888908 | None:intergenic | 40.0% | |
| ! | ACAGCAGAAAGAAAGGGTTT+TGG | - | chr1_3:58888897-58888916 | Msa0129080:intron | 40.0% |
| GGAATACTTCAGCAGAATGA+AGG | - | chr1_3:58888957-58888976 | Msa0129080:intron | 40.0% | |
| ! | TTGGATGTTGTTGTGCTGAT+TGG | - | chr1_3:58889013-58889032 | Msa0129080:intron | 40.0% |
| ! | GAAAGTGCAACCAAGTTGTT+AGG | - | chr1_3:58889077-58889096 | Msa0129080:intron | 40.0% |
| !! | CAGAGGTTGTTGGTTCAATA+TGG | + | chr1_3:58889553-58889572 | None:intergenic | 40.0% |
| ATAAGTTCTCACCTAAGCAG+AGG | + | chr1_3:58889570-58889589 | None:intergenic | 40.0% | |
| ! | TTTTTCCCCTCTGAACTTCT+GGG | - | chr1_3:58889620-58889639 | Msa0129080:CDS | 40.0% |
| GGGAACTGTCAATAATCACA+TGG | - | chr1_3:58889640-58889659 | Msa0129080:CDS | 40.0% | |
| TCACATGGTAAAGCTGGAAA+AGG | - | chr1_3:58889655-58889674 | Msa0129080:CDS | 40.0% | |
| GGGGATAACTCCAATCTTAT+TGG | + | chr1_3:58889851-58889870 | None:intergenic | 40.0% | |
| ! | AGCAACTATTTCTTCCTCAG+GGG | + | chr1_3:58889870-58889889 | None:intergenic | 40.0% |
| ! | GAAGCAACTATTTCTTCCTC+AGG | + | chr1_3:58889872-58889891 | None:intergenic | 40.0% |
| TGCAGCATCATTTCAGATAC+TGG | + | chr1_3:58890059-58890078 | None:intergenic | 40.0% | |
| GTAGTAGGGAAATTCATGAC+TGG | + | chr1_3:58890239-58890258 | None:intergenic | 40.0% | |
| ! | CATGTCAAGTTTTGCGTAGT+AGG | + | chr1_3:58890254-58890273 | None:intergenic | 40.0% |
| TGACAGCTGTGTCAATTCAA+TGG | - | chr1_3:58890281-58890300 | Msa0129080:CDS | 40.0% | |
| AATTTATAACGGCATCCAGG+TGG | + | chr1_3:58891018-58891037 | None:intergenic | 40.0% | |
| ! | GCACACAATATGTTTTCCCT+TGG | + | chr1_3:58891160-58891179 | None:intergenic | 40.0% |
| AGTCAATAGACTTTCCAGCT+TGG | + | chr1_3:58891260-58891279 | None:intergenic | 40.0% | |
| !! | TCTATTGACTTACACGGCTT+TGG | - | chr1_3:58891270-58891289 | Msa0129080:CDS | 40.0% |
| !! | TAAACCCTTGGTTCTAAGCT+TGG | - | chr1_3:58891648-58891667 | Msa0129080:intron | 40.0% |
| AGATCCAAGCTTAGAACCAA+GGG | + | chr1_3:58891655-58891674 | None:intergenic | 40.0% | |
| TAGATCCAAGCTTAGAACCA+AGG | + | chr1_3:58891656-58891675 | None:intergenic | 40.0% | |
| TCAGGTCCTTAACATCTGTT+GGG | + | chr1_3:58891859-58891878 | None:intergenic | 40.0% | |
| ATCAGGTCCTTAACATCTGT+TGG | + | chr1_3:58891860-58891879 | None:intergenic | 40.0% | |
| ! | TCAACTCTATCTGATGGTGA+TGG | - | chr1_3:58891881-58891900 | Msa0129080:CDS | 40.0% |
| ! | AATTGATGATCGACATGCTC+GGG | + | chr1_3:58891993-58892012 | None:intergenic | 40.0% |
| TGCACACCTTTACAAGTATC+TGG | - | chr1_3:58892104-58892123 | Msa0129080:CDS | 40.0% | |
| GAGGTCAGAATTAACAATGC+AGG | - | chr1_3:58892293-58892312 | Msa0129080:CDS | 40.0% | |
| TTCGACGAGTTCTTTAACGG+CGG | + | chr1_3:58885873-58885892 | None:intergenic | 45.0% | |
| GTCGAAAATAGCTTAGACGC+CGG | - | chr1_3:58885887-58885906 | Msa0129080:three_prime_UTR | 45.0% | |
| AAGAGAGATTTCGATGCTGG+TGG | + | chr1_3:58885915-58885934 | None:intergenic | 45.0% | |
| TGAAATGCCGCAACCGTTAT+CGG | + | chr1_3:58885969-58885988 | None:intergenic | 45.0% | |
| AACGTCAAATGCGTTGCAAC+CGG | + | chr1_3:58886226-58886245 | None:intergenic | 45.0% | |
| CTTTCTGTTGGGTACTCTTC+AGG | - | chr1_3:58886908-58886927 | Msa0129080:intron | 45.0% | |
| TCTGAGAGCTGCAAAGTTGA+TGG | - | chr1_3:58887101-58887120 | Msa0129080:intron | 45.0% | |
| ! | GATGGTTTTCTTTCCAAGCC+TGG | - | chr1_3:58887119-58887138 | Msa0129080:intron | 45.0% |
| ! | TTTTCTTTCCAAGCCTGGAC+TGG | - | chr1_3:58887124-58887143 | Msa0129080:intron | 45.0% |
| TTTCTTTCCAAGCCTGGACT+GGG | - | chr1_3:58887125-58887144 | Msa0129080:intron | 45.0% | |
| !! | ACTGGGTAACGGAAGGAATT+TGG | - | chr1_3:58887142-58887161 | Msa0129080:intron | 45.0% |
| !! | CTGGGTAACGGAAGGAATTT+GGG | - | chr1_3:58887143-58887162 | Msa0129080:intron | 45.0% |
| !!! | CCGATTTTTGGCATATCCAC+TGG | + | chr1_3:58887200-58887219 | None:intergenic | 45.0% |
| ! | CTCTCTAAGGGCTTGCAATA+AGG | + | chr1_3:58887363-58887382 | None:intergenic | 45.0% |
| CTTATTGCAAGCCCTTAGAG+AGG | - | chr1_3:58887361-58887380 | Msa0129080:intron | 45.0% | |
| ! | AAACAGTCTTCTTTTGCGGC+AGG | + | chr1_3:58887446-58887465 | None:intergenic | 45.0% |
| GTCTCCTATCGTAACGAAAC+CGG | - | chr1_3:58887490-58887509 | Msa0129080:intron | 45.0% | |
| TCTCAAGGACAGTTGTGAGT+GGG | - | chr1_3:58887843-58887862 | Msa0129080:intron | 45.0% | |
| AAGGACAGGCACTTCAGATA+AGG | + | chr1_3:58887972-58887991 | None:intergenic | 45.0% | |
| ! | GGAGCTTGATTTCTAAGGAC+AGG | + | chr1_3:58887986-58888005 | None:intergenic | 45.0% |
| TTGCAGCAACGTAATCCTGA+TGG | - | chr1_3:58888100-58888119 | Msa0129080:intron | 45.0% | |
| GAGAACCTAACATGGTACGT+TGG | - | chr1_3:58888176-58888195 | Msa0129080:intron | 45.0% | |
| GCAAACCAACGTACCATGTT+AGG | + | chr1_3:58888184-58888203 | None:intergenic | 45.0% | |
| CAGTCAAGGATTCCGAAGAT+TGG | - | chr1_3:58888203-58888222 | Msa0129080:intron | 45.0% | |
| !! | TAGTAACGGGTTAGCCACTA+AGG | + | chr1_3:58888386-58888405 | None:intergenic | 45.0% |
| CAGGCGATGAACAAATTGGA+GGG | + | chr1_3:58888613-58888632 | None:intergenic | 45.0% | |
| TTGGGAGAATCTAATCGTGC+AGG | + | chr1_3:58888632-58888651 | None:intergenic | 45.0% | |
| TTAGATTCTCCCAAGTCCTC+TGG | - | chr1_3:58888638-58888657 | Msa0129080:intron | 45.0% | |
| ATCTTCTGACCAGAGGACTT+GGG | + | chr1_3:58888650-58888669 | None:intergenic | 45.0% | |
| TATCTTCTGACCAGAGGACT+TGG | + | chr1_3:58888651-58888670 | None:intergenic | 45.0% | |
| GGAGAATATCTTCTGACCAG+AGG | + | chr1_3:58888657-58888676 | None:intergenic | 45.0% | |
| GAACAATCTTTCCAGTTCGG+TGG | + | chr1_3:58888932-58888951 | None:intergenic | 45.0% | |
| TGAACCAACAACCTCTGCTT+AGG | - | chr1_3:58889556-58889575 | Msa0129080:CDS | 45.0% | |
| CAGAAGTTCAGAGGGGAAAA+AGG | + | chr1_3:58889621-58889640 | None:intergenic | 45.0% | |
| ! | CTTTTTCCCCTCTGAACTTC+TGG | - | chr1_3:58889619-58889638 | Msa0129080:CDS | 45.0% |
| ACAGTTCCCAGAAGTTCAGA+GGG | + | chr1_3:58889629-58889648 | None:intergenic | 45.0% | |
| AAGATTGGAGTTATCCCCTG+AGG | - | chr1_3:58889853-58889872 | Msa0129080:intron | 45.0% | |
| !! | TTTCTAAGGCTGATCATCCG+TGG | + | chr1_3:58890145-58890164 | None:intergenic | 45.0% |
| GTTGACAAAGCTTGAGCGAT+AGG | - | chr1_3:58890606-58890625 | Msa0129080:CDS | 45.0% | |
| ! | AACACCATGTTTGGAGTCGA+AGG | - | chr1_3:58891060-58891079 | Msa0129080:CDS | 45.0% |
| TCTACCTTCGACTCCAAACA+TGG | + | chr1_3:58891067-58891086 | None:intergenic | 45.0% | |
| ! | GGAAGTCTAGCTGACTTACA+CGG | - | chr1_3:58891428-58891447 | Msa0129080:intron | 45.0% |
| !! | CTATCTGATGGTGATGGTCA+TGG | - | chr1_3:58891887-58891906 | Msa0129080:CDS | 45.0% |
| ACATTGCACGAACTCTTGGA+GGG | + | chr1_3:58891964-58891983 | None:intergenic | 45.0% | |
| AACATTGCACGAACTCTTGG+AGG | + | chr1_3:58891965-58891984 | None:intergenic | 45.0% | |
| TCCAAGAGTTCGTGCAATGT+TGG | - | chr1_3:58891964-58891983 | Msa0129080:CDS | 45.0% | |
| TCACCATGGAATTGTCCTCA+TGG | - | chr1_3:58892225-58892244 | Msa0129080:intron | 45.0% | |
| TCAACTAAATGCCGCATGGT+TGG | + | chr1_3:58892255-58892274 | None:intergenic | 45.0% | |
| CAAGTCAACTAAATGCCGCA+TGG | + | chr1_3:58892259-58892278 | None:intergenic | 45.0% | |
| !!! | CATATTTTTTTTTATTAAAT+TGG | - | chr1_3:58888994-58889013 | Msa0129080:intron | 5.0% |
| ! | CAAGTCACCGATAACGGTTG+CGG | - | chr1_3:58885959-58885978 | Msa0129080:CDS | 50.0% |
| TCATTCCGGTGTTCTTGTGG+CGG | - | chr1_3:58886249-58886268 | Msa0129080:CDS | 50.0% | |
| ! | CTTTTCCGCCACAAGAACAC+CGG | + | chr1_3:58886257-58886276 | None:intergenic | 50.0% |
| TTTGGCTGCACGAACACAAC+TGG | - | chr1_3:58886960-58886979 | Msa0129080:intron | 50.0% | |
| !! | GATGCCGGTTTCGTTACGAT+AGG | + | chr1_3:58887497-58887516 | None:intergenic | 50.0% |
| CTGAGGAATCGCCACATTCA+GGG | + | chr1_3:58887519-58887538 | None:intergenic | 50.0% | |
| !! | GAAGGGTTGATTCGTGAGAG+TGG | - | chr1_3:58887704-58887723 | Msa0129080:intron | 50.0% |
| !! | GGTTGATTCGTGAGAGTGGT+GGG | - | chr1_3:58887708-58887727 | Msa0129080:intron | 50.0% |
| !! | GTTGATTCGTGAGAGTGGTG+GGG | - | chr1_3:58887709-58887728 | Msa0129080:intron | 50.0% |
| ! | TTGATTCGTGAGAGTGGTGG+GGG | - | chr1_3:58887710-58887729 | Msa0129080:intron | 50.0% |
| ! | TGAGAGTGGTGGGGGTTTAA+TGG | - | chr1_3:58887718-58887737 | Msa0129080:intron | 50.0% |
| ! | GAGAGTGGTGGGGGTTTAAT+GGG | - | chr1_3:58887719-58887738 | Msa0129080:intron | 50.0% |
| TTTGCGCAATCAAGCTACCC+TGG | - | chr1_3:58887820-58887839 | Msa0129080:intron | 50.0% | |
| ATCAAGCTACCCTGGTCTCA+AGG | - | chr1_3:58887828-58887847 | Msa0129080:intron | 50.0% | |
| CACAACTGTCCTTGAGACCA+GGG | + | chr1_3:58887840-58887859 | None:intergenic | 50.0% | |
| TCACAACTGTCCTTGAGACC+AGG | + | chr1_3:58887841-58887860 | None:intergenic | 50.0% | |
| GTCTCAAGGACAGTTGTGAG+TGG | - | chr1_3:58887842-58887861 | Msa0129080:intron | 50.0% | |
| CTCAAGGACAGTTGTGAGTG+GGG | - | chr1_3:58887844-58887863 | Msa0129080:intron | 50.0% | |
| TCAAGGACAGTTGTGAGTGG+GGG | - | chr1_3:58887845-58887864 | Msa0129080:intron | 50.0% | |
| !! | GGTACGTTGGTTTGCAGTCA+AGG | - | chr1_3:58888189-58888208 | Msa0129080:intron | 50.0% |
| GCAGGCGATGAACAAATTGG+AGG | + | chr1_3:58888614-58888633 | None:intergenic | 50.0% | |
| CGTGCAGGCGATGAACAAAT+TGG | + | chr1_3:58888617-58888636 | None:intergenic | 50.0% | |
| TCACTATACGGCTGCAACTC+TGG | - | chr1_3:58888852-58888871 | Msa0129080:intron | 50.0% | |
| CTCACCTAAGCAGAGGTTGT+TGG | + | chr1_3:58889563-58889582 | None:intergenic | 50.0% | |
| CAGTTCCCAGAAGTTCAGAG+GGG | + | chr1_3:58889628-58889647 | None:intergenic | 50.0% | |
| GACAGTTCCCAGAAGTTCAG+AGG | + | chr1_3:58889630-58889649 | None:intergenic | 50.0% | |
| ! | TAGTGAGTTGCCACTTGCCA+CGG | - | chr1_3:58890125-58890144 | Msa0129080:CDS | 50.0% |
| GAGGATCTAAATGCACCACC+TGG | - | chr1_3:58891000-58891019 | Msa0129080:CDS | 50.0% | |
| GAAGATGATTCAGGCCAAGC+TGG | - | chr1_3:58891243-58891262 | Msa0129080:CDS | 50.0% | |
| ! | CTAGCTGACTTACACGGCTT+TGG | - | chr1_3:58891434-58891453 | Msa0129080:intron | 50.0% |
| GCCAACATTGCACGAACTCT+TGG | + | chr1_3:58891968-58891987 | None:intergenic | 50.0% | |
| TGGCAGAGCTGAAATCACCA+TGG | - | chr1_3:58892211-58892230 | Msa0129080:intron | 50.0% | |
| CTGCCATGAGGACAATTCCA+TGG | + | chr1_3:58892231-58892250 | None:intergenic | 50.0% | |
| CATGGAATTGTCCTCATGGC+AGG | - | chr1_3:58892229-58892248 | Msa0129080:intron | 50.0% | |
| GAGGTCGAGGATGACTTGAC+CGG | + | chr1_3:58885846-58885865 | None:intergenic | 55.0% | |
| GTTCTTTAACGGCGGAGGAG+AGG | + | chr1_3:58885865-58885884 | None:intergenic | 55.0% | |
| GACGAGTTCTTTAACGGCGG+AGG | + | chr1_3:58885870-58885889 | None:intergenic | 55.0% | |
| ! | TCCAAGCCTGGACTGGGTAA+CGG | - | chr1_3:58887131-58887150 | Msa0129080:intron | 55.0% |
| TTCCTTCCGTTACCCAGTCC+AGG | + | chr1_3:58887140-58887159 | None:intergenic | 55.0% | |
| GAAACCGGCATCCCTGAATG+TGG | - | chr1_3:58887505-58887524 | Msa0129080:intron | 55.0% | |
| ATCGCCACATTCAGGGATGC+CGG | + | chr1_3:58887512-58887531 | None:intergenic | 55.0% | |
| CCTGAGGAATCGCCACATTC+AGG | + | chr1_3:58887520-58887539 | None:intergenic | 55.0% | |
| CCTGAATGTGGCGATTCCTC+AGG | - | chr1_3:58887517-58887536 | Msa0129080:intron | 55.0% | |
| !! | GGGTTGATTCGTGAGAGTGG+TGG | - | chr1_3:58887707-58887726 | Msa0129080:intron | 55.0% |
| ! | TGGTGGGGGTTTAATGGGCA+AGG | - | chr1_3:58887724-58887743 | Msa0129080:intron | 55.0% |
| ! | CTGCTGTGGTTGATGCCATC+AGG | + | chr1_3:58888118-58888137 | None:intergenic | 55.0% |
| TTCGGAAGATGGTTCAGGCC+AGG | - | chr1_3:58891403-58891422 | Msa0129080:intron | 55.0% | |
| AGTCAGCTAGACTTCCAGCC+TGG | + | chr1_3:58891424-58891443 | None:intergenic | 55.0% | |
| TGGAGGGCAGACTGAATCTG+AGG | + | chr1_3:58891948-58891967 | None:intergenic | 55.0% | |
| ! | GATTTCGATGCTGGTGGCGC+CGG | + | chr1_3:58885909-58885928 | None:intergenic | 60.0% |
| TCCGTTACCCAGTCCAGGCT+TGG | + | chr1_3:58887135-58887154 | None:intergenic | 60.0% | |
| !! | AGCCTGGACTGGGTAACGGA+AGG | - | chr1_3:58887135-58887154 | Msa0129080:intron | 60.0% |
| GGCTGATCATCCGTGGCAAG+TGG | + | chr1_3:58890138-58890157 | None:intergenic | 60.0% | |
| GAAGATGGTTCAGGCCAGGC+TGG | - | chr1_3:58891407-58891426 | Msa0129080:intron | 60.0% | |
| CTCATGGCAGGCCAACCATG+CGG | - | chr1_3:58892241-58892260 | Msa0129080:intron | 60.0% | |
| TAACGGCGGAGGAGAGGTCG+AGG | + | chr1_3:58885859-58885878 | None:intergenic | 65.0% | |
| !! | CGCATGGTTGGCCTGCCATG+AGG | + | chr1_3:58892243-58892262 | None:intergenic | 65.0% |
| GGCAGCAGCAGCCACCGAAC+TGG | - | chr1_3:58888918-58888937 | Msa0129080:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 58885773 | 58892485 | 58885773 | ID=Msa0129080;Name=Msa0129080 |
| chr1_3 | mRNA | 58885773 | 58892485 | 58885773 | ID=Msa0129080-mRNA-1;Parent=Msa0129080;Name=Msa0129080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=9|0.9|0.90|1|1|1|11|165|941 |
| chr1_3 | exon | 58885773 | 58886060 | 58885773 | ID=Msa0129080-mRNA-1:exon:19076;Parent=Msa0129080-mRNA-1 |
| chr1_3 | exon | 58886207 | 58886394 | 58886207 | ID=Msa0129080-mRNA-1:exon:19075;Parent=Msa0129080-mRNA-1 |
| chr1_3 | exon | 58887177 | 58887280 | 58887177 | ID=Msa0129080-mRNA-1:exon:19074;Parent=Msa0129080-mRNA-1 |
| chr1_3 | exon | 58888346 | 58888411 | 58888346 | ID=Msa0129080-mRNA-1:exon:19073;Parent=Msa0129080-mRNA-1 |
| chr1_3 | exon | 58888681 | 58888754 | 58888681 | ID=Msa0129080-mRNA-1:exon:19072;Parent=Msa0129080-mRNA-1 |
| chr1_3 | exon | 58888907 | 58888975 | 58888907 | ID=Msa0129080-mRNA-1:exon:19071;Parent=Msa0129080-mRNA-1 |
| chr1_3 | exon | 58889280 | 58889406 | 58889280 | ID=Msa0129080-mRNA-1:exon:19070;Parent=Msa0129080-mRNA-1 |
| chr1_3 | exon | 58889481 | 58889749 | 58889481 | ID=Msa0129080-mRNA-1:exon:19069;Parent=Msa0129080-mRNA-1 |
| chr1_3 | exon | 58890069 | 58891328 | 58890069 | ID=Msa0129080-mRNA-1:exon:19068;Parent=Msa0129080-mRNA-1 |
| chr1_3 | exon | 58891856 | 58892179 | 58891856 | ID=Msa0129080-mRNA-1:exon:19067;Parent=Msa0129080-mRNA-1 |
| chr1_3 | exon | 58892255 | 58892485 | 58892255 | ID=Msa0129080-mRNA-1:exon:19066;Parent=Msa0129080-mRNA-1 |
| chr1_3 | five_prime_UTR | 58892477 | 58892485 | 58892477 | ID=Msa0129080-mRNA-1:five_prime_utr;Parent=Msa0129080-mRNA-1 |
| chr1_3 | CDS | 58892255 | 58892476 | 58892255 | ID=Msa0129080-mRNA-1:cds;Parent=Msa0129080-mRNA-1 |
| chr1_3 | CDS | 58891856 | 58892179 | 58891856 | ID=Msa0129080-mRNA-1:cds;Parent=Msa0129080-mRNA-1 |
| chr1_3 | CDS | 58890069 | 58891328 | 58890069 | ID=Msa0129080-mRNA-1:cds;Parent=Msa0129080-mRNA-1 |
| chr1_3 | CDS | 58889481 | 58889749 | 58889481 | ID=Msa0129080-mRNA-1:cds;Parent=Msa0129080-mRNA-1 |
| chr1_3 | CDS | 58889280 | 58889406 | 58889280 | ID=Msa0129080-mRNA-1:cds;Parent=Msa0129080-mRNA-1 |
| chr1_3 | CDS | 58888907 | 58888975 | 58888907 | ID=Msa0129080-mRNA-1:cds;Parent=Msa0129080-mRNA-1 |
| chr1_3 | CDS | 58888681 | 58888754 | 58888681 | ID=Msa0129080-mRNA-1:cds;Parent=Msa0129080-mRNA-1 |
| chr1_3 | CDS | 58888346 | 58888411 | 58888346 | ID=Msa0129080-mRNA-1:cds;Parent=Msa0129080-mRNA-1 |
| chr1_3 | CDS | 58887177 | 58887280 | 58887177 | ID=Msa0129080-mRNA-1:cds;Parent=Msa0129080-mRNA-1 |
| chr1_3 | CDS | 58886207 | 58886394 | 58886207 | ID=Msa0129080-mRNA-1:cds;Parent=Msa0129080-mRNA-1 |
| chr1_3 | CDS | 58885938 | 58886060 | 58885938 | ID=Msa0129080-mRNA-1:cds;Parent=Msa0129080-mRNA-1 |
| chr1_3 | three_prime_UTR | 58885773 | 58885937 | 58885773 | ID=Msa0129080-mRNA-1:three_prime_utr;Parent=Msa0129080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
