Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789980 | XP_003591551.2 | 96.512 | 946 | 15 | 2 | 1 | 941 | 1 | 933 | 0.0 | 1872 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789980 | sp|Q941I6|PMS1_ARATH | 56.610 | 938 | 332 | 12 | 7 | 926 | 16 | 896 | 0.0 | 994 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789980 | A0A396JUA8 | 96.512 | 946 | 15 | 2 | 1 | 941 | 1 | 933 | 0.0 | 1872 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032430 | Msa0789980 | 0.811913 | 5.518971e-51 | -8.615850e-47 |
| Msa0054480 | Msa0789980 | 0.813152 | 2.958375e-51 | -8.615850e-47 |
| Msa0061290 | Msa0789980 | 0.826691 | 2.360615e-54 | -8.615850e-47 |
| Msa0070700 | Msa0789980 | 0.820468 | 6.751138e-53 | -8.615850e-47 |
| Msa0079380 | Msa0789980 | 0.808482 | 3.031325e-50 | -8.615850e-47 |
| Msa0115080 | Msa0789980 | 0.818242 | 2.171600e-52 | -8.615850e-47 |
| Msa0118590 | Msa0789980 | 0.816317 | 5.884404e-52 | -8.615850e-47 |
| Msa0625720 | Msa0789980 | 0.822287 | 2.567798e-53 | -8.615850e-47 |
| Msa0663390 | Msa0789980 | 0.806038 | 9.988117e-50 | -8.615850e-47 |
| Msa0691980 | Msa0789980 | 0.804620 | 1.979381e-49 | -8.615850e-47 |
| Msa0715700 | Msa0789980 | 0.800796 | 1.218480e-48 | -8.615850e-47 |
| Msa0789980 | Msa0902510 | 0.801139 | 1.036606e-48 | -8.615850e-47 |
| Msa0789980 | Msa0941190 | 0.814122 | 1.809327e-51 | -8.615850e-47 |
| Msa0789980 | Msa1155170 | -0.800124 | 1.669535e-48 | -8.615850e-47 |
| Msa0789980 | Msa1171710 | 0.826058 | 3.340433e-54 | -8.615850e-47 |
| Msa0789980 | Msa1186020 | 0.803411 | 3.531991e-49 | -8.615850e-47 |
| Msa0789980 | Msa1298820 | 0.813403 | 2.605559e-51 | -8.615850e-47 |
| Msa0789980 | Msa1320670 | 0.807313 | 5.371844e-50 | -8.615850e-47 |
| Msa0789980 | Msa1332070 | 0.811975 | 5.349141e-51 | -8.615850e-47 |
| Msa0789980 | Msa1370010 | 0.806559 | 7.754606e-50 | -8.615850e-47 |
| Msa0789980 | Msa1370720 | 0.946542 | 3.786559e-105 | -8.615850e-47 |
| Msa0789980 | Msa1376770 | 0.816188 | 6.290091e-52 | -8.615850e-47 |
| Msa0789980 | Msa1443760 | 0.984699 | 2.521828e-161 | -8.615850e-47 |
| Msa0129080 | Msa0789980 | 0.946811 | 2.260935e-105 | -8.615850e-47 |
| Msa0144370 | Msa0789980 | 0.817985 | 2.481697e-52 | -8.615850e-47 |
| Msa0152350 | Msa0789980 | 0.817225 | 3.683235e-52 | -8.615850e-47 |
| Msa0172070 | Msa0789980 | 0.805327 | 1.408061e-49 | -8.615850e-47 |
| Msa0174880 | Msa0789980 | 0.941842 | 2.053191e-101 | -8.615850e-47 |
| Msa0225860 | Msa0789980 | 0.803475 | 3.424389e-49 | -8.615850e-47 |
| Msa0378720 | Msa0789980 | 0.811588 | 6.494526e-51 | -8.615850e-47 |
| Msa0465410 | Msa0789980 | 0.816083 | 6.640297e-52 | -8.615850e-47 |
| Msa0261340 | Msa0789980 | 0.812801 | 3.530992e-51 | -8.615850e-47 |
| Msa0337700 | Msa0789980 | 0.802600 | 5.194145e-49 | -8.615850e-47 |
| Msa0358890 | Msa0789980 | 0.805014 | 1.637514e-49 | -8.615850e-47 |
| Msa0511270 | Msa0789980 | 0.817016 | 4.103250e-52 | -8.615850e-47 |
| Msa0529890 | Msa0789980 | 0.819442 | 1.159068e-52 | -8.615850e-47 |
| Msa0534720 | Msa0789980 | 0.801046 | 1.082974e-48 | -8.615850e-47 |
| Msa0585560 | Msa0789980 | 0.818881 | 1.554853e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789980 | MtrunA17_Chr1g0195721 | 96.512 | 946 | 15 | 2 | 1 | 941 | 1 | 933 | 0.0 | 1872 |
| Msa0789980 | MtrunA17_Chr3g0077711 | 32.492 | 317 | 202 | 8 | 8 | 319 | 7 | 316 | 2.82e-36 | 147 |
| Msa0789980 | MtrunA17_Chr5g0407101 | 24.528 | 371 | 245 | 9 | 8 | 350 | 4 | 367 | 7.68e-24 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789980 | AT4G02460.1 | 56.610 | 938 | 332 | 12 | 7 | 926 | 16 | 896 | 0.0 | 994 |
| Msa0789980 | AT4G02460.4 | 54.675 | 845 | 308 | 13 | 100 | 926 | 11 | 798 | 0.0 | 840 |
| Msa0789980 | AT4G02460.2 | 54.657 | 816 | 297 | 12 | 7 | 804 | 16 | 776 | 0.0 | 800 |
| Msa0789980 | AT4G02460.3 | 51.867 | 723 | 275 | 12 | 100 | 804 | 11 | 678 | 0.0 | 644 |
| Msa0789980 | AT4G09140.1 | 32.722 | 327 | 202 | 9 | 1 | 319 | 22 | 338 | 1.15e-37 | 152 |
| Msa0789980 | AT4G35520.3 | 27.249 | 378 | 230 | 10 | 6 | 358 | 2 | 359 | 1.14e-27 | 121 |
| Msa0789980 | AT4G35520.3 | 28.054 | 221 | 120 | 7 | 734 | 934 | 920 | 1121 | 7.77e-11 | 67.0 |
| Msa0789980 | AT4G35520.2 | 28.161 | 348 | 211 | 9 | 6 | 328 | 2 | 335 | 1.44e-27 | 121 |
| Msa0789980 | AT4G35520.2 | 28.054 | 221 | 120 | 7 | 734 | 934 | 947 | 1148 | 8.52e-11 | 66.6 |
| Msa0789980 | AT4G35520.6 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 4.21e-23 | 106 |
| Msa0789980 | AT4G35520.6 | 28.054 | 221 | 120 | 7 | 734 | 934 | 910 | 1111 | 8.58e-11 | 66.6 |
| Msa0789980 | AT4G35520.4 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 4.23e-23 | 106 |
| Msa0789980 | AT4G35520.1 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 5.12e-23 | 106 |
| Msa0789980 | AT4G35520.1 | 28.054 | 221 | 120 | 7 | 734 | 934 | 922 | 1123 | 8.91e-11 | 66.6 |
| Msa0789980 | AT4G35520.5 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 5.83e-23 | 106 |
| Msa0789980 | AT4G35520.5 | 27.586 | 232 | 121 | 7 | 734 | 934 | 910 | 1125 | 5.49e-11 | 67.4 |
| Msa0789980 | AT4G35520.7 | 27.586 | 232 | 121 | 7 | 734 | 934 | 710 | 925 | 7.28e-11 | 67.0 |
Find 195 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATTTATCATTGGTAAAT+TGG | 0.152350 | 5_3:+618744 | Msa0789980:CDS |
| CTTCAGTCTCTGACTACTTT+TGG | 0.163663 | 5_3:+615568 | Msa0789980:CDS |
| ACTGGGTAACGGAAGGAATT+TGG | 0.197107 | 5_3:+616583 | Msa0789980:CDS |
| TTGAGTTCTCTTTGTGCTTT+GGG | 0.201918 | 5_3:+615607 | Msa0789980:CDS |
| TTGAAATGATTTCAGGTTCT+TGG | 0.223911 | 5_3:+615505 | Msa0789980:intron |
| GCTTAGAAGTTTCATTAATT+TGG | 0.226550 | 5_3:-617501 | None:intergenic |
| TTAAACTCTTTGCTTCTTAC+AGG | 0.234975 | 5_3:-615775 | None:intergenic |
| CAGAGCGCACAAAACTTTAA+AGG | 0.246050 | 5_3:+617198 | Msa0789980:CDS |
| AAGAAAATTGCGCGACAAAT+TGG | 0.251802 | 5_3:+615715 | Msa0789980:CDS |
| GAGAGAGAAGAGACTTTCTT+TGG | 0.257630 | 5_3:+618153 | Msa0789980:CDS |
| GGGGATAACTCCAATCTTAT+TGG | 0.270951 | 5_3:-619289 | None:intergenic |
| TTGTCTATAACTACCAATTA+TGG | 0.281795 | 5_3:-621359 | None:intergenic |
| CCTGAGGAATCGCCACATTC+AGG | 0.292943 | 5_3:-616958 | None:intergenic |
| CATGGAGAATGTTCCATAAT+TGG | 0.303790 | 5_3:+621346 | Msa0789980:CDS |
| GTTGAGTTCTCTTTGTGCTT+TGG | 0.311062 | 5_3:+615606 | Msa0789980:CDS |
| CAGAGGTTGTTGGTTCAATA+TGG | 0.311266 | 5_3:-618991 | None:intergenic |
| AATGCAGGAGTAATTAATTA+TGG | 0.318351 | 5_3:+621749 | Msa0789980:exon |
| CGGAATATACGTAAGGAATA+TGG | 0.320588 | 5_3:+615799 | Msa0789980:CDS |
| CTCTCTAAGGGCTTGCAATA+AGG | 0.337830 | 5_3:-616801 | None:intergenic |
| TACAGCAACAAAATTGTTAA+GGG | 0.349954 | 5_3:-617356 | None:intergenic |
| TCTGAGAGCTGCAAAGTTGA+TGG | 0.350885 | 5_3:+616542 | Msa0789980:CDS |
| TCTTTCTGCTGTTCAATGTC+TGG | 0.350891 | 5_3:-618327 | None:intergenic |
| CTGGGTAACGGAAGGAATTT+GGG | 0.351699 | 5_3:+616584 | Msa0789980:CDS |
| GTTTCAGATACTTGAGCATT+TGG | 0.356986 | 5_3:+621632 | Msa0789980:intron |
| TTCAATCTTGGATTTATCAT+TGG | 0.358205 | 5_3:+618736 | Msa0789980:CDS |
| TTACAGCAACAAAATTGTTA+AGG | 0.359742 | 5_3:-617357 | None:intergenic |
| CATTTGACGTTTAATCATTC+CGG | 0.364164 | 5_3:+615676 | Msa0789980:CDS |
| GTGATTGGACAATTCAATCT+TGG | 0.365478 | 5_3:+618724 | Msa0789980:CDS |
| CGTGCAGGCGATGAACAAAT+TGG | 0.368469 | 5_3:-618055 | None:intergenic |
| TCTTCTCTCTCCTACTCTTA+AGG | 0.372090 | 5_3:-618141 | None:intergenic |
| AGATTTATTCATTGTGGATC+AGG | 0.374375 | 5_3:+618771 | Msa0789980:CDS |
| TATATCCATTTCAGGAAGAA+TGG | 0.378291 | 5_3:+620405 | Msa0789980:intron |
| AACAAGATCATATCTTCATT+TGG | 0.379755 | 5_3:+617477 | Msa0789980:CDS |
| CAATTCACATGGACATAATC+AGG | 0.380435 | 5_3:+619332 | Msa0789980:CDS |
| ATAGCAAAAGGCGTTCGATT+TGG | 0.383212 | 5_3:+616383 | Msa0789980:CDS |
| TCACTATACGGCTGCAACTC+TGG | 0.383524 | 5_3:+618293 | Msa0789980:CDS |
| TTTATCAGATTGTTGCTAGA+TGG | 0.385028 | 5_3:-618001 | None:intergenic |
| ACAGCATAAGAGGCATTATC+AGG | 0.385292 | 5_3:-616845 | None:intergenic |
| GTTGGTTCAATATGGTTGAT+TGG | 0.388187 | 5_3:-618983 | None:intergenic |
| AACGTCAAATGCGTTGCAAC+CGG | 0.389282 | 5_3:-615664 | None:intergenic |
| GCAAACCAACGTACCATGTT+AGG | 0.389360 | 5_3:-617622 | None:intergenic |
| CTTGAACAATCTTTCCAGTT+CGG | 0.390899 | 5_3:-618373 | None:intergenic |
| TGATCTTGTTATCAGGTCAT+TGG | 0.393473 | 5_3:-617464 | None:intergenic |
| AAATACTACAGAGCATGTTT+TGG | 0.394023 | 5_3:+618021 | Msa0789980:CDS |
| TTTGTTGTAAGCCCTCTCTA+AGG | 0.396357 | 5_3:-616814 | None:intergenic |
| TATCTTCTGACCAGAGGACT+TGG | 0.403945 | 5_3:-618089 | None:intergenic |
| TGAAATGCCGCAACCGTTAT+CGG | 0.405670 | 5_3:-615407 | None:intergenic |
| CTTGTGGAGCTTGATTTCTA+AGG | 0.406330 | 5_3:-617429 | None:intergenic |
| CATGAACACTTTCAACTGCT+TGG | 0.406413 | 5_3:+616499 | Msa0789980:CDS |
| GTCTCCTATCGTAACGAAAC+CGG | 0.407956 | 5_3:+616931 | Msa0789980:CDS |
| GCCAACATTGCACGAACTCT+TGG | 0.408478 | 5_3:-621406 | None:intergenic |
| GGTTGATTCGTGAGAGTGGT+GGG | 0.409407 | 5_3:+617149 | Msa0789980:CDS |
| CAATCCAGCAAATACAGATA+TGG | 0.412593 | 5_3:+618178 | Msa0789980:CDS |
| GACCATTAGCGCAGTACATC+AGG | 0.412609 | 5_3:-621915 | None:intergenic |
| TAGAATACCTTGAAGCTGTT+TGG | 0.415285 | 5_3:-615430 | None:intergenic |
| GAAGATATGATCTTGTTATC+AGG | 0.417275 | 5_3:-617471 | None:intergenic |
| TTTCTTTCCAAGCCTGGACT+GGG | 0.421406 | 5_3:+616566 | Msa0789980:CDS |
| GAAGCAACTATTTCTTCCTC+AGG | 0.429926 | 5_3:-619310 | None:intergenic |
| TTTGGCTGCACGAACACAAC+TGG | 0.430222 | 5_3:+616401 | Msa0789980:CDS |
| CAGGAAGAATGGATTTACTT+TGG | 0.430284 | 5_3:+620416 | Msa0789980:intron |
| CATATGTAGGCCAATAAGAT+TGG | 0.432843 | 5_3:+619279 | Msa0789980:intron |
| TCAATACTGCTAGTATTTCT+CGG | 0.433938 | 5_3:+616999 | Msa0789980:CDS |
| TTCAGAAGCATTATTAGAAT+CGG | 0.437195 | 5_3:-617089 | None:intergenic |
| AAATTCATTGACAGCATAAG+AGG | 0.438687 | 5_3:-616855 | None:intergenic |
| TTGGTTCAATATGGTTGATT+GGG | 0.438724 | 5_3:-618982 | None:intergenic |
| TCAATGTAACTCCTGATAAG+AGG | 0.441411 | 5_3:+616753 | Msa0789980:CDS |
| ACAGCAGAAAGAAAGGGTTT+TGG | 0.441429 | 5_3:+618338 | Msa0789980:CDS |
| CTATTCTCACATGTTGAAGA+AGG | 0.444593 | 5_3:+617127 | Msa0789980:CDS |
| TCCGTTACCCAGTCCAGGCT+TGG | 0.447116 | 5_3:-616573 | None:intergenic |
| GGCAGCAGCAGCCACCGAAC+TGG | 0.447748 | 5_3:+618359 | Msa0789980:CDS |
| TACAGATATGGAAAAGCTAA+TGG | 0.451831 | 5_3:+618190 | Msa0789980:CDS |
| GGACAGACTTTAATTTATAA+CGG | 0.452106 | 5_3:-620467 | None:intergenic |
| TATATCTCTCAATGAGCATA+AGG | 0.453173 | 5_3:+617054 | Msa0789980:CDS |
| TTGATTCGTGAGAGTGGTGG+GGG | 0.453706 | 5_3:+617151 | Msa0789980:CDS |
| TTCCTTCCGTTACCCAGTCC+AGG | 0.459170 | 5_3:-616578 | None:intergenic |
| GTAAAATTCATGATTGCAAT+GGG | 0.461439 | 5_3:-616707 | None:intergenic |
| CATCAGATAGAGTTGAAATC+AGG | 0.463046 | 5_3:-621315 | None:intergenic |
| TTGACATCATATGCTTTCGT+TGG | 0.464208 | 5_3:-616734 | None:intergenic |
| ATCGTTCACAGAATCTGTTC+CGG | 0.465982 | 5_3:+615265 | Msa0789980:CDS |
| TTAAAGACTTCGGCGAAGAA+TGG | 0.467001 | 5_3:+615374 | Msa0789980:CDS |
| CTGAGGAATCGCCACATTCA+GGG | 0.467227 | 5_3:-616957 | None:intergenic |
| TTTAAGAGAGATTTCGATGC+TGG | 0.469837 | 5_3:-615356 | None:intergenic |
| CATTTCACCAAACAGCTTCA+AGG | 0.471334 | 5_3:+615423 | Msa0789980:CDS |
| CTGCTGTGGTTGATGCCATC+AGG | 0.472176 | 5_3:-617556 | None:intergenic |
| AGAGCGCACAAAACTTTAAA+GGG | 0.476324 | 5_3:+617199 | Msa0789980:CDS |
| CTCACCTAAGCAGAGGTTGT+TGG | 0.476645 | 5_3:-619001 | None:intergenic |
| TAATCATTCCGGTGTTCTTG+TGG | 0.477100 | 5_3:+615687 | Msa0789980:CDS |
| CAATACTGCTAGTATTTCTC+GGG | 0.477701 | 5_3:+617000 | Msa0789980:CDS |
| TGTCGATCATCAATTATGAT+TGG | 0.479343 | 5_3:+621439 | Msa0789980:CDS |
| TGGTTTCAAGTCACCGATAA+CGG | 0.480127 | 5_3:+615394 | Msa0789980:CDS |
| CGTAAAATTCATGATTGCAA+TGG | 0.483954 | 5_3:-616708 | None:intergenic |
| GTTGATTCGTGAGAGTGGTG+GGG | 0.490939 | 5_3:+617150 | Msa0789980:CDS |
| ATCATCAAACCAATCGCAAA+AGG | 0.493056 | 5_3:+615241 | Msa0789980:CDS |
| ACATTGAACAGCAGAAAGAA+AGG | 0.494491 | 5_3:+618331 | Msa0789980:CDS |
| GGGTTGATTCGTGAGAGTGG+TGG | 0.494804 | 5_3:+617148 | Msa0789980:CDS |
| CCTGAATGTGGCGATTCCTC+AGG | 0.494938 | 5_3:+616958 | Msa0789980:CDS |
| GCATATGCCCTTATAGCAAA+AGG | 0.495988 | 5_3:+616371 | Msa0789980:CDS |
| CATGGAATTGTCCTCATGGC+AGG | 0.498761 | 5_3:+621670 | Msa0789980:CDS |
| GAATGGATTTACTTTGGAAG+AGG | 0.499091 | 5_3:+620422 | Msa0789980:CDS |
| TGAACCAACAACCTCTGCTT+AGG | 0.499577 | 5_3:+618997 | Msa0789980:CDS |
| GATAACATCATAACAGTGCT+TGG | 0.500424 | 5_3:+616476 | Msa0789980:CDS |
| GGATCAAGATTTATTCATTG+TGG | 0.501006 | 5_3:+618765 | Msa0789980:CDS |
| GATTTCGATGCTGGTGGCGC+CGG | 0.501956 | 5_3:-615347 | None:intergenic |
| AACATTGCACGAACTCTTGG+AGG | 0.503231 | 5_3:-621403 | None:intergenic |
| TTAGATTCTCCCAAGTCCTC+TGG | 0.504018 | 5_3:+618079 | Msa0789980:CDS |
| ACTTGACGAAAATTCATAAG+AGG | 0.505723 | 5_3:+621715 | Msa0789980:CDS |
| TCTCAAGGACAGTTGTGAGT+GGG | 0.510002 | 5_3:+617284 | Msa0789980:CDS |
| ATGGAAAAGCTAATGGCAAA+AGG | 0.512412 | 5_3:+618197 | Msa0789980:CDS |
| TTGGTTTCAGTATTTACTTG+TGG | 0.514585 | 5_3:-617445 | None:intergenic |
| CTCAAGGACAGTTGTGAGTG+GGG | 0.515053 | 5_3:+617285 | Msa0789980:CDS |
| TTGATGATTTGCGATTCAAT+CGG | 0.515545 | 5_3:-615226 | None:intergenic |
| GAGGTCAGAATTAACAATGC+AGG | 0.518258 | 5_3:+621734 | Msa0789980:CDS |
| AAGCAACTATTTCTTCCTCA+GGG | 0.518792 | 5_3:-619309 | None:intergenic |
| GGAGCTTGATTTCTAAGGAC+AGG | 0.519756 | 5_3:-617424 | None:intergenic |
| ATGCTGTCAATGAATTTATG+TGG | 0.520548 | 5_3:+616861 | Msa0789980:CDS |
| TTTAATTTATAACGGCATCC+AGG | 0.521120 | 5_3:-620459 | None:intergenic |
| GTCTCAAGGACAGTTGTGAG+TGG | 0.522054 | 5_3:+617283 | Msa0789980:CDS |
| AATTGATGATCGACATGCTC+GGG | 0.528848 | 5_3:-621431 | None:intergenic |
| TCCAAGAGTTCGTGCAATGT+TGG | 0.531112 | 5_3:+621405 | Msa0789980:CDS |
| TCCAAGCCTGGACTGGGTAA+CGG | 0.532883 | 5_3:+616572 | Msa0789980:CDS |
| CATTGAACAGCAGAAAGAAA+GGG | 0.533665 | 5_3:+618332 | Msa0789980:CDS |
| ACGTAAGGAATATGGAAAGC+TGG | 0.534231 | 5_3:+615807 | Msa0789980:CDS |
| ATCGCCACATTCAGGGATGC+CGG | 0.534608 | 5_3:-616950 | None:intergenic |
| CTATCTGATGGTGATGGTCA+TGG | 0.537313 | 5_3:+621328 | Msa0789980:CDS |
| GAACAATCTTTCCAGTTCGG+TGG | 0.538298 | 5_3:-618370 | None:intergenic |
| TCACAACTGTCCTTGAGACC+AGG | 0.539057 | 5_3:-617279 | None:intergenic |
| AAGGACAGGCACTTCAGATA+AGG | 0.540336 | 5_3:-617410 | None:intergenic |
| GGAATACTTCAGCAGAATGA+AGG | 0.543403 | 5_3:+618398 | Msa0789980:CDS |
| TTGAAAAGAAAATTGCATGT+TGG | 0.544226 | 5_3:-618116 | None:intergenic |
| TCAACTAAATGCCGCATGGT+TGG | 0.546469 | 5_3:-621693 | None:intergenic |
| AACACCATGTTTGGAGTCGA+AGG | 0.548138 | 5_3:+620501 | Msa0789980:CDS |
| AACGAGAACAGTGAATGAAC+CGG | 0.548570 | 5_3:+615645 | Msa0789980:CDS |
| TTGTTGTAAGCCCTCTCTAA+GGG | 0.551985 | 5_3:-616813 | None:intergenic |
| GAAGGGTTGATTCGTGAGAG+TGG | 0.553809 | 5_3:+617145 | Msa0789980:CDS |
| AATGCTTCTGAATCTGATGA+TGG | 0.555834 | 5_3:+617100 | Msa0789980:CDS |
| GACGAGTTCTTTAACGGCGG+AGG | 0.557460 | 5_3:-615308 | None:intergenic |
| TTGGGAGAATCTAATCGTGC+AGG | 0.560739 | 5_3:-618070 | None:intergenic |
| CAAGTCACCGATAACGGTTG+CGG | 0.561953 | 5_3:+615400 | Msa0789980:CDS |
| ATCAAGCTACCCTGGTCTCA+AGG | 0.562398 | 5_3:+617269 | Msa0789980:CDS |
| TAACGGCGGAGGAGAGGTCG+AGG | 0.563344 | 5_3:-615297 | None:intergenic |
| AAGAGAGATTTCGATGCTGG+TGG | 0.566861 | 5_3:-615353 | None:intergenic |
| CTCAGATATACATAATGACA+TGG | 0.567030 | 5_3:-616525 | None:intergenic |
| ATCTTCTGACCAGAGGACTT+GGG | 0.570934 | 5_3:-618088 | None:intergenic |
| TAATTGATGATCGACATGCT+CGG | 0.574476 | 5_3:-621432 | None:intergenic |
| TAAGAAGCAAAGAGTTTAAG+CGG | 0.579709 | 5_3:+615779 | Msa0789980:CDS |
| TCACCATGGAATTGTCCTCA+TGG | 0.580634 | 5_3:+621666 | Msa0789980:CDS |
| TTATTGCAAGCCCTTAGAGA+GGG | 0.581606 | 5_3:+616803 | Msa0789980:CDS |
| TGAGTTCTCTTTGTGCTTTG+GGG | 0.584399 | 5_3:+615608 | Msa0789980:CDS |
| TTCGACGAGTTCTTTAACGG+CGG | 0.588864 | 5_3:-615311 | None:intergenic |
| TATTCTCACATGTTGAAGAA+GGG | 0.589142 | 5_3:+617128 | Msa0789980:CDS |
| ATTATGATTGGTGATGCACT+TGG | 0.592485 | 5_3:+621451 | Msa0789980:CDS |
| GTTTAAGCGGAATATACGTA+AGG | 0.594722 | 5_3:+615792 | Msa0789980:CDS |
| ACAAATTGGAACGACTGTGA+CGG | 0.594875 | 5_3:+615729 | Msa0789980:CDS |
| TCAAGGACAGTTGTGAGTGG+GGG | 0.595006 | 5_3:+617286 | Msa0789980:CDS |
| GAGGATCTAAATGCACCACC+TGG | 0.595531 | 5_3:+620441 | Msa0789980:CDS |
| CTGATTTCAACTCTATCTGA+TGG | 0.597097 | 5_3:+621316 | Msa0789980:CDS |
| ACTGGAAAGATTGTTCAAGA+AGG | 0.599565 | 5_3:+618377 | Msa0789980:CDS |
| AATAGTTGCTTCAATTCACA+TGG | 0.600812 | 5_3:+619321 | Msa0789980:CDS |
| TTGCAGCAACGTAATCCTGA+TGG | 0.603672 | 5_3:+617541 | Msa0789980:CDS |
| GAAATCTCTCTTAAAGACTT+CGG | 0.605620 | 5_3:+615364 | Msa0789980:CDS |
| GAGGTCGAGGATGACTTGAC+CGG | 0.606410 | 5_3:-615284 | None:intergenic |
| ACTTTAAAGGGTGACAAGAG+TGG | 0.606920 | 5_3:+617211 | Msa0789980:CDS |
| GTTCTTTAACGGCGGAGGAG+AGG | 0.606990 | 5_3:-615303 | None:intergenic |
| TCAACTCTATCTGATGGTGA+TGG | 0.607257 | 5_3:+621322 | Msa0789980:CDS |
| TCATTCCGGTGTTCTTGTGG+CGG | 0.607818 | 5_3:+615690 | Msa0789980:CDS |
| TGGAAGAAATGAAATGCAGA+AGG | 0.612549 | 5_3:+621471 | Msa0789980:CDS |
| CACAACTGTCCTTGAGACCA+GGG | 0.613211 | 5_3:-617278 | None:intergenic |
| TCTACCTTCGACTCCAAACA+TGG | 0.613546 | 5_3:-620505 | None:intergenic |
| CTTATTGCAAGCCCTTAGAG+AGG | 0.613621 | 5_3:+616802 | Msa0789980:CDS |
| TTTGCGCAATCAAGCTACCC+TGG | 0.613771 | 5_3:+617261 | Msa0789980:CDS |
| GCAGGCGATGAACAAATTGG+AGG | 0.613983 | 5_3:-618052 | None:intergenic |
| TGGAGGGCAGACTGAATCTG+AGG | 0.614764 | 5_3:-621386 | None:intergenic |
| GTCGAAAATAGCTTAGACGC+CGG | 0.617734 | 5_3:+615328 | Msa0789980:CDS |
| AATAATTCTGACCGCAACAG+TGG | 0.621125 | 5_3:+617028 | Msa0789980:CDS |
| AGCCTGGACTGGGTAACGGA+AGG | 0.623995 | 5_3:+616576 | Msa0789980:CDS |
| CAGGCGATGAACAAATTGGA+GGG | 0.629188 | 5_3:-618051 | None:intergenic |
| CTGCCATGAGGACAATTCCA+TGG | 0.639214 | 5_3:-621669 | None:intergenic |
| ACATTGCACGAACTCTTGGA+GGG | 0.639683 | 5_3:-621402 | None:intergenic |
| CAAGTCAACTAAATGCCGCA+TGG | 0.640175 | 5_3:-621697 | None:intergenic |
| GAAACCGGCATCCCTGAATG+TGG | 0.644771 | 5_3:+616946 | Msa0789980:CDS |
| ATAAGTTCTCACCTAAGCAG+AGG | 0.645938 | 5_3:-619008 | None:intergenic |
| TACTGACAGAGAACCTAACA+TGG | 0.647355 | 5_3:+617609 | Msa0789980:CDS |
| TCAGATATACATAATGACAT+GGG | 0.650966 | 5_3:-616524 | None:intergenic |
| AGCAACTATTTCTTCCTCAG+GGG | 0.653963 | 5_3:-619308 | None:intergenic |
| TCTGTGGTACTTAAAACCCA+AGG | 0.654508 | 5_3:+616437 | Msa0789980:CDS |
| GGAGAATATCTTCTGACCAG+AGG | 0.658458 | 5_3:-618095 | None:intergenic |
| CGCATGGTTGGCCTGCCATG+AGG | 0.658661 | 5_3:-621681 | None:intergenic |
| CTCATGGCAGGCCAACCATG+CGG | 0.662792 | 5_3:+621682 | Msa0789980:CDS |
| AATTTATAACGGCATCCAGG+TGG | 0.663899 | 5_3:-620456 | None:intergenic |
| GAGATATACTACCACTGTTG+CGG | 0.665026 | 5_3:-617039 | None:intergenic |
| TCAGTATAATGCTCTTCCTG+AGG | 0.671539 | 5_3:-616974 | None:intergenic |
| ACAGTGAATTTACACTGCTG+TGG | 0.676981 | 5_3:-617570 | None:intergenic |
| GATGCCGGTTTCGTTACGAT+AGG | 0.680524 | 5_3:-616935 | None:intergenic |
| TGGCAGAGCTGAAATCACCA+TGG | 0.715825 | 5_3:+621652 | Msa0789980:CDS |
| AAGATTGGAGTTATCCCCTG+AGG | 0.743451 | 5_3:+619294 | Msa0789980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAGAATATTAATAATGT+GGG | + | chr5_3:616173-616192 | Msa0789980:intron | 10.0% |
| !!! | CATTTAGAATATTAATAATG+TGG | + | chr5_3:616172-616191 | Msa0789980:intron | 15.0% |
| !!! | TTTAGAATATTAATAATGTG+GGG | + | chr5_3:616174-616193 | Msa0789980:intron | 15.0% |
| !!! | TATTACTTTCTACAATTTTA+AGG | + | chr5_3:616207-616226 | Msa0789980:intron | 15.0% |
| !!! | TAATTTTTTTAGTCACTATA+CGG | + | chr5_3:618281-618300 | Msa0789980:intron | 15.0% |
| !!! | TAAATATGATTTTAGTATGA+TGG | - | chr5_3:618615-618634 | None:intergenic | 15.0% |
| !!! | TATATTTAATCTGAAATTGT+AGG | - | chr5_3:618660-618679 | None:intergenic | 15.0% |
| !! | TAAATATATCATGTATTCAA+AGG | + | chr5_3:618672-618691 | Msa0789980:intron | 15.0% |
| !!! | ATTATCTTTTTGTGTATTTA+AGG | + | chr5_3:619618-619637 | Msa0789980:intron | 15.0% |
| !!! | TTCAATTTTTGCATTTATTT+CGG | + | chr5_3:620826-620845 | Msa0789980:intron | 15.0% |
| !! | AATTTATTACACTGAAATAT+TGG | + | chr5_3:620984-621003 | Msa0789980:intron | 15.0% |
| !!! | TACAATCTAAAAATAACTTT+TGG | - | chr5_3:621784-621803 | None:intergenic | 15.0% |
| !!! | TATTTTTAGATTGTAAGTTA+AGG | + | chr5_3:621789-621808 | Msa0789980:three_prime_UTR | 15.0% |
| !!! | ATTTTTAGATTGTAAGTTAA+GGG | + | chr5_3:621790-621809 | Msa0789980:three_prime_UTR | 15.0% |
| !!! | CTAATACTACATTTTTAAAG+GGG | - | chr5_3:615459-615478 | None:intergenic | 20.0% |
| !!! | CCTAATACTACATTTTTAAA+GGG | - | chr5_3:615460-615479 | None:intergenic | 20.0% |
| !!! | CCTTTAAAAATGTAGTATTA+GGG | + | chr5_3:615458-615477 | Msa0789980:intron | 20.0% |
| !!! | ATTTTGTTTGAAATGATTTC+AGG | + | chr5_3:615498-615517 | Msa0789980:intron | 20.0% |
| !! | AATTTAGGTATTTACTCAAA+TGG | - | chr5_3:615909-615928 | None:intergenic | 20.0% |
| !! | ATTTGAGTAAATACCTAAAT+TGG | + | chr5_3:615908-615927 | Msa0789980:intron | 20.0% |
| !! | TTAGAATATTAATAATGTGG+GGG | + | chr5_3:616175-616194 | Msa0789980:intron | 20.0% |
| !! | AACAAAAAATAAATCCCAAT+AGG | - | chr5_3:616260-616279 | None:intergenic | 20.0% |
| !! | TATGATATATTCTTTCTGTT+GGG | + | chr5_3:616338-616357 | Msa0789980:intron | 20.0% |
| !!! | AGACAGTATTTTTTTGTAAA+CGG | + | chr5_3:616611-616630 | Msa0789980:CDS | 20.0% |
| !!! | AAAAATATTTTCCTCTTATC+AGG | - | chr5_3:616767-616786 | None:intergenic | 20.0% |
| !!! | ATCATTTTCTGATTTAGTAA+CGG | - | chr5_3:617841-617860 | None:intergenic | 20.0% |
| !!! | TATGATTTTCCTACTTTATA+AGG | - | chr5_3:618241-618260 | None:intergenic | 20.0% |
| !!! | AAAACATTGATTTGGTTTTA+TGG | - | chr5_3:618566-618585 | None:intergenic | 20.0% |
| !!! | TAAAACCAAATCAATGTTTT+TGG | + | chr5_3:618566-618585 | Msa0789980:intron | 20.0% |
| !!! | CTTTGATATTATGTTTTAAC+AGG | + | chr5_3:618702-618721 | Msa0789980:intron | 20.0% |
| !!! | AAAAAAAACATGATTTGTGA+TGG | + | chr5_3:618904-618923 | Msa0789980:intron | 20.0% |
| !! | CTAATAAAAATTGCATATGT+AGG | + | chr5_3:619266-619285 | Msa0789980:intron | 20.0% |
| !!! | ATCAATATGTTCATTTTCTA+AGG | - | chr5_3:619600-619619 | None:intergenic | 20.0% |
| !! | AAAAACATGCATATGTATAT+TGG | + | chr5_3:619819-619838 | Msa0789980:intron | 20.0% |
| !!! | ATATGTTTGAAATCATTACT+TGG | + | chr5_3:619849-619868 | Msa0789980:intron | 20.0% |
| !! | ATCAAATTCAACAAGTTATT+TGG | - | chr5_3:619925-619944 | None:intergenic | 20.0% |
| !!! | TTGATTTCATATGATGTTTT+TGG | + | chr5_3:619940-619959 | Msa0789980:intron | 20.0% |
| !! | ACATTTGCATAATTTATGAA+AGG | + | chr5_3:620215-620234 | Msa0789980:intron | 20.0% |
| !! | ATAGAATCCATAAAATTCAA+AGG | - | chr5_3:620532-620551 | None:intergenic | 20.0% |
| !! | GATTAATTTAATGATTCTGT+TGG | + | chr5_3:620556-620575 | Msa0789980:intron | 20.0% |
| !!! | TTCAATTTTTGCATTCATTT+CGG | + | chr5_3:620662-620681 | Msa0789980:intron | 20.0% |
| !!! | AATGTCATTTGATATTTGAT+TGG | + | chr5_3:620743-620762 | Msa0789980:intron | 20.0% |
| !! | TTAGTTGAACAATAAATGTA+AGG | + | chr5_3:621569-621588 | Msa0789980:intron | 20.0% |
| !! | CCCTTTAAAAATGTAGTATT+AGG | + | chr5_3:615457-615476 | Msa0789980:intron | 25.0% |
| !! | CCCTAATACTACATTTTTAA+AGG | - | chr5_3:615461-615480 | None:intergenic | 25.0% |
| !! | ACAATTTCAAGTACCAATTT+AGG | - | chr5_3:615924-615943 | None:intergenic | 25.0% |
| ! | AATTGGTACTTGAAATTGTA+AGG | + | chr5_3:615925-615944 | Msa0789980:intron | 25.0% |
| ! | TGTAATTTCTTAGATCGTTT+AGG | - | chr5_3:615985-616004 | None:intergenic | 25.0% |
| ! | GATAACCTATACATACAAAT+CGG | + | chr5_3:616116-616135 | Msa0789980:intron | 25.0% |
| ! | TGATTAGCATTATGCAATTT+CGG | + | chr5_3:616145-616164 | Msa0789980:intron | 25.0% |
| ! | GTATGATATATTCTTTCTGT+TGG | + | chr5_3:616337-616356 | Msa0789980:intron | 25.0% |
| !!! | TTTTAGAGAATCATTTCCTT+GGG | - | chr5_3:616456-616475 | None:intergenic | 25.0% |
| ! | TCAGATATACATAATGACAT+GGG | - | chr5_3:616527-616546 | None:intergenic | 25.0% |
| ! | GTAAAATTCATGATTGCAAT+GGG | - | chr5_3:616710-616729 | None:intergenic | 25.0% |
| !! | CATTGCAATCATGAATTTTA+CGG | + | chr5_3:616709-616728 | Msa0789980:CDS | 25.0% |
| !!! | TTCAGAAGCATTATTAGAAT+CGG | - | chr5_3:617092-617111 | None:intergenic | 25.0% |
| ! | TACAGCAACAAAATTGTTAA+GGG | - | chr5_3:617359-617378 | None:intergenic | 25.0% |
| ! | TTACAGCAACAAAATTGTTA+AGG | - | chr5_3:617360-617379 | None:intergenic | 25.0% |
| ! | AACAAGATCATATCTTCATT+TGG | + | chr5_3:617477-617496 | Msa0789980:CDS | 25.0% |
| ! | GCTTAGAAGTTTCATTAATT+TGG | - | chr5_3:617504-617523 | None:intergenic | 25.0% |
| !! | TCATTTTCTGATTTAGTAAC+GGG | - | chr5_3:617840-617859 | None:intergenic | 25.0% |
| ! | TTGAAAAGAAAATTGCATGT+TGG | - | chr5_3:618119-618138 | None:intergenic | 25.0% |
| !!! | TCAATGCTATTTTAGTAAGT+GGG | + | chr5_3:618495-618514 | Msa0789980:intron | 25.0% |
| !! | GTATTCCAAAAACATTGATT+TGG | - | chr5_3:618574-618593 | None:intergenic | 25.0% |
| !!! | ATTATGTTTTAACAGGTGAT+TGG | + | chr5_3:618709-618728 | Msa0789980:intron | 25.0% |
| ! | TTCAATCTTGGATTTATCAT+TGG | + | chr5_3:618736-618755 | Msa0789980:CDS | 25.0% |
| ! | TGGATTTATCATTGGTAAAT+TGG | + | chr5_3:618744-618763 | Msa0789980:CDS | 25.0% |
| !! | ATATGGATTAATCATTCTAC+AGG | - | chr5_3:618848-618867 | None:intergenic | 25.0% |
| ! | AGCAAAAGAATGCATTTATA+TGG | - | chr5_3:618865-618884 | None:intergenic | 25.0% |
| ! | GATCATGAACAAATAAAGAA+AGG | - | chr5_3:619237-619256 | None:intergenic | 25.0% |
| ! | TCTGACAATAACACAAAATA+TGG | - | chr5_3:619401-619420 | None:intergenic | 25.0% |
| ! | AGAAACTATATTTCATCAAC+AGG | + | chr5_3:619418-619437 | Msa0789980:intron | 25.0% |
| ! | AAATTCAACAAGTTATTTGG+TGG | - | chr5_3:619922-619941 | None:intergenic | 25.0% |
| !! | TTTAATTTCTAATGTGCATG+TGG | - | chr5_3:620195-620214 | None:intergenic | 25.0% |
| ! | CATAATTTATGAAAGGTTGT+TGG | + | chr5_3:620222-620241 | Msa0789980:intron | 25.0% |
| ! | AGTGACTGAATCAAATATAA+TGG | - | chr5_3:620253-620272 | None:intergenic | 25.0% |
| ! | GCAACTAAAGCATAAAATAT+TGG | - | chr5_3:620339-620358 | None:intergenic | 25.0% |
| ! | ATTTGCATTATATCCATTTC+AGG | + | chr5_3:620397-620416 | Msa0789980:intron | 25.0% |
| !! | GGACAGACTTTAATTTATAA+CGG | - | chr5_3:620470-620489 | None:intergenic | 25.0% |
| ! | AAATGTTTCAAATAAACCCT+TGG | + | chr5_3:621077-621096 | Msa0789980:intron | 25.0% |
| ! | ACATATTTGAATCTTGTGAA+TGG | + | chr5_3:621130-621149 | Msa0789980:intron | 25.0% |
| ! | TTGTCTATAACTACCAATTA+TGG | - | chr5_3:621362-621381 | None:intergenic | 25.0% |
| ! | AATGCAGGAGTAATTAATTA+TGG | + | chr5_3:621749-621768 | Msa0789980:exon | 25.0% |
| ! | TTGATGATTTGCGATTCAAT+CGG | - | chr5_3:615229-615248 | None:intergenic | 30.0% |
| ! | ATTTTCGACGAGTTCTTTAA+CGG | - | chr5_3:615317-615336 | None:intergenic | 30.0% |
| GAAATCTCTCTTAAAGACTT+CGG | + | chr5_3:615364-615383 | Msa0789980:CDS | 30.0% | |
| !! | TTGAAATGATTTCAGGTTCT+TGG | + | chr5_3:615505-615524 | Msa0789980:intron | 30.0% |
| CATTTGACGTTTAATCATTC+CGG | + | chr5_3:615676-615695 | Msa0789980:CDS | 30.0% | |
| TTAAACTCTTTGCTTCTTAC+AGG | - | chr5_3:615778-615797 | None:intergenic | 30.0% | |
| TAAGAAGCAAAGAGTTTAAG+CGG | + | chr5_3:615779-615798 | Msa0789980:CDS | 30.0% | |
| TGTAGGACTATAATGACATT+AGG | + | chr5_3:616039-616058 | Msa0789980:intron | 30.0% | |
| TAGGAATAGAATGGAGTAAT+TGG | - | chr5_3:616241-616260 | None:intergenic | 30.0% | |
| TTACTCCATTCTATTCCTAT+TGG | + | chr5_3:616242-616261 | Msa0789980:intron | 30.0% | |
| TACTCCATTCTATTCCTATT+GGG | + | chr5_3:616243-616262 | Msa0789980:intron | 30.0% | |
| AAATCCCAATAGGAATAGAA+TGG | - | chr5_3:616250-616269 | None:intergenic | 30.0% | |
| CAGTGAAACAGGAATAAAAA+AGG | - | chr5_3:616304-616323 | None:intergenic | 30.0% | |
| ATTAACAAACTCAGTGAAAC+AGG | - | chr5_3:616315-616334 | None:intergenic | 30.0% | |
| TGGCAAAAATGTAAAATCTG+TGG | + | chr5_3:616421-616440 | Msa0789980:CDS | 30.0% | |
| !! | CTTTTAGAGAATCATTTCCT+TGG | - | chr5_3:616457-616476 | None:intergenic | 30.0% |
| CTCAGATATACATAATGACA+TGG | - | chr5_3:616528-616547 | None:intergenic | 30.0% | |
| ! | TTCACAAGTTTTCCGATTTT+TGG | - | chr5_3:616653-616672 | None:intergenic | 30.0% |
| CGTAAAATTCATGATTGCAA+TGG | - | chr5_3:616711-616730 | None:intergenic | 30.0% | |
| AAATTCATTGACAGCATAAG+AGG | - | chr5_3:616858-616877 | None:intergenic | 30.0% | |
| ATGCTGTCAATGAATTTATG+TGG | + | chr5_3:616861-616880 | Msa0789980:CDS | 30.0% | |
| TCAATACTGCTAGTATTTCT+CGG | + | chr5_3:616999-617018 | Msa0789980:CDS | 30.0% | |
| TATATCTCTCAATGAGCATA+AGG | + | chr5_3:617054-617073 | Msa0789980:CDS | 30.0% | |
| TATTCTCACATGTTGAAGAA+GGG | + | chr5_3:617128-617147 | Msa0789980:CDS | 30.0% | |
| TTGGTTTCAGTATTTACTTG+TGG | - | chr5_3:617448-617467 | None:intergenic | 30.0% | |
| ! | GAAGATATGATCTTGTTATC+AGG | - | chr5_3:617474-617493 | None:intergenic | 30.0% |
| ! | TGCAAATTTTCAATCTCACT+TGG | - | chr5_3:617526-617545 | None:intergenic | 30.0% |
| !! | TTTAAGTTGAAGTTCCTTAG+TGG | + | chr5_3:617810-617829 | Msa0789980:intron | 30.0% |
| AGTATGAAACAAAGACAAAG+TGG | - | chr5_3:617911-617930 | None:intergenic | 30.0% | |
| TTTATCAGATTGTTGCTAGA+TGG | - | chr5_3:618004-618023 | None:intergenic | 30.0% | |
| ! | AAATACTACAGAGCATGTTT+TGG | + | chr5_3:618021-618040 | Msa0789980:CDS | 30.0% |
| ! | TTTTCCATATCTGTATTTGC+TGG | - | chr5_3:618185-618204 | None:intergenic | 30.0% |
| TACAGATATGGAAAAGCTAA+TGG | + | chr5_3:618190-618209 | Msa0789980:CDS | 30.0% | |
| !!! | CTCAATGCTATTTTAGTAAG+TGG | + | chr5_3:618494-618513 | Msa0789980:intron | 30.0% |
| !!! | CAATGCTATTTTAGTAAGTG+GGG | + | chr5_3:618496-618515 | Msa0789980:intron | 30.0% |
| CTTAGAAAAACCTAACAACT+TGG | - | chr5_3:618531-618550 | None:intergenic | 30.0% | |
| !!! | ACATTGATTTGGTTTTATGG+TGG | - | chr5_3:618563-618582 | None:intergenic | 30.0% |
| !! | AGTATGATGGATTAGATATG+CGG | - | chr5_3:618602-618621 | None:intergenic | 30.0% |
| GGATCAAGATTTATTCATTG+TGG | + | chr5_3:618765-618784 | Msa0789980:CDS | 30.0% | |
| AGATTTATTCATTGTGGATC+AGG | + | chr5_3:618771-618790 | Msa0789980:CDS | 30.0% | |
| CTGTAGTTTCAAAAACATAG+TGG | - | chr5_3:618803-618822 | None:intergenic | 30.0% | |
| TTGGTTCAATATGGTTGATT+GGG | - | chr5_3:618985-619004 | None:intergenic | 30.0% | |
| TGTTGAGTTCAAAGTTACAA+AGG | + | chr5_3:619163-619182 | Msa0789980:intron | 30.0% | |
| AATAGTTGCTTCAATTCACA+TGG | + | chr5_3:619321-619340 | Msa0789980:CDS | 30.0% | |
| ATATCACCGCTTGATAAATA+TGG | - | chr5_3:619369-619388 | None:intergenic | 30.0% | |
| GAAAGTGAATAAAGAGATCA+TGG | - | chr5_3:619523-619542 | None:intergenic | 30.0% | |
| ATTATCAATTAAAGCAGCAC+AGG | - | chr5_3:619752-619771 | None:intergenic | 30.0% | |
| CAACTAGTTGAACAATTTGA+GGG | - | chr5_3:620117-620136 | None:intergenic | 30.0% | |
| ACAACTAGTTGAACAATTTG+AGG | - | chr5_3:620118-620137 | None:intergenic | 30.0% | |
| TAAGCTAATGTCTTCAACAA+TGG | + | chr5_3:620144-620163 | Msa0789980:intron | 30.0% | |
| !!! | AGTAAGATACTTTTTTTCCG+TGG | + | chr5_3:620278-620297 | Msa0789980:intron | 30.0% |
| !!! | GTAAGATACTTTTTTTCCGT+GGG | + | chr5_3:620279-620298 | Msa0789980:intron | 30.0% |
| !!! | TAAGATACTTTTTTTCCGTG+GGG | + | chr5_3:620280-620299 | Msa0789980:intron | 30.0% |
| !! | AATTTTAAAGATAACCCCCA+CGG | - | chr5_3:620298-620317 | None:intergenic | 30.0% |
| !!! | TGCGTTTTTTTGCATCTTTA+TGG | + | chr5_3:620356-620375 | Msa0789980:intron | 30.0% |
| TATATCCATTTCAGGAAGAA+TGG | + | chr5_3:620405-620424 | Msa0789980:intron | 30.0% | |
| TAAATCCATTCTTCCTGAAA+TGG | - | chr5_3:620413-620432 | None:intergenic | 30.0% | |
| ! | TTTAATTTATAACGGCATCC+AGG | - | chr5_3:620462-620481 | None:intergenic | 30.0% |
| !! | AACATGGTGTTTTTACTGTA+GGG | - | chr5_3:620492-620511 | None:intergenic | 30.0% |
| !! | AAACATGGTGTTTTTACTGT+AGG | - | chr5_3:620493-620512 | None:intergenic | 30.0% |
| TACAGTAAAAACACCATGTT+TGG | + | chr5_3:620492-620511 | Msa0789980:CDS | 30.0% | |
| ! | GGTAGAACCTTTGAATTTTA+TGG | + | chr5_3:620522-620541 | Msa0789980:intron | 30.0% |
| ! | TATGTGATTCTTTTGTGCAT+TGG | + | chr5_3:620767-620786 | Msa0789980:intron | 30.0% |
| TTTGCATTTATTTCGGAAGA+TGG | + | chr5_3:620833-620852 | Msa0789980:intron | 30.0% | |
| TTGATACAAGGTTATGTGAA+TGG | - | chr5_3:620914-620933 | None:intergenic | 30.0% | |
| ATAACCTTGTATCAAGATGA+TGG | + | chr5_3:620919-620938 | Msa0789980:intron | 30.0% | |
| ! | ATCAAGATGATGGTAGAAAA+TGG | + | chr5_3:620929-620948 | Msa0789980:intron | 30.0% |
| GAAATTCTGTATTAGAAACG+AGG | + | chr5_3:621006-621025 | Msa0789980:intron | 30.0% | |
| ! | CTCATTTCTTATTTCGTTTC+TGG | - | chr5_3:621056-621075 | None:intergenic | 30.0% |
| TGTCGATCATCAATTATGAT+TGG | + | chr5_3:621439-621458 | Msa0789980:CDS | 30.0% | |
| TGTGCACGTGTTATAAAATA+AGG | - | chr5_3:621531-621550 | None:intergenic | 30.0% | |
| ACTAAACCAGATACTTGTAA+AGG | - | chr5_3:621554-621573 | None:intergenic | 30.0% | |
| ACTTGACGAAAATTCATAAG+AGG | + | chr5_3:621715-621734 | Msa0789980:CDS | 30.0% | |
| ! | CTCTCAAACTTCACATTTTA+TGG | + | chr5_3:621860-621879 | Msa0789980:three_prime_UTR | 30.0% |
| ! | TCAAACTTCACATTTTATGG+AGG | + | chr5_3:621863-621882 | Msa0789980:three_prime_UTR | 30.0% |
| ! | CAAACTTCACATTTTATGGA+GGG | + | chr5_3:621864-621883 | Msa0789980:three_prime_UTR | 30.0% |
| ATCATCAAACCAATCGCAAA+AGG | + | chr5_3:615241-615260 | Msa0789980:CDS | 35.0% | |
| TTTAAGAGAGATTTCGATGC+TGG | - | chr5_3:615359-615378 | None:intergenic | 35.0% | |
| TAGAATACCTTGAAGCTGTT+TGG | - | chr5_3:615433-615452 | None:intergenic | 35.0% | |
| !! | CTGACTACTTTTGGATTTAG+AGG | + | chr5_3:615577-615596 | Msa0789980:CDS | 35.0% |
| ! | TACTTTTGGATTTAGAGGTG+AGG | + | chr5_3:615582-615601 | Msa0789980:CDS | 35.0% |
| TTGAGTTCTCTTTGTGCTTT+GGG | + | chr5_3:615607-615626 | Msa0789980:CDS | 35.0% | |
| AAGAAAATTGCGCGACAAAT+TGG | + | chr5_3:615715-615734 | Msa0789980:CDS | 35.0% | |
| GTTTAAGCGGAATATACGTA+AGG | + | chr5_3:615792-615811 | Msa0789980:CDS | 35.0% | |
| CGGAATATACGTAAGGAATA+TGG | + | chr5_3:615799-615818 | Msa0789980:CDS | 35.0% | |
| GTCCTACAAATAACAACGTA+GGG | - | chr5_3:616027-616046 | None:intergenic | 35.0% | |
| AGTCCTACAAATAACAACGT+AGG | - | chr5_3:616028-616047 | None:intergenic | 35.0% | |
| GGACTATAATGACATTAGGT+TGG | + | chr5_3:616043-616062 | Msa0789980:intron | 35.0% | |
| !! | GACATTAGGTTGGTAATATC+AGG | + | chr5_3:616053-616072 | Msa0789980:intron | 35.0% |
| !! | CTTCACCGATTTGTATGTAT+AGG | - | chr5_3:616124-616143 | None:intergenic | 35.0% |
| GATAACATCATAACAGTGCT+TGG | + | chr5_3:616476-616495 | Msa0789980:CDS | 35.0% | |
| TTGACATCATATGCTTTCGT+TGG | - | chr5_3:616737-616756 | None:intergenic | 35.0% | |
| TCAATGTAACTCCTGATAAG+AGG | + | chr5_3:616753-616772 | Msa0789980:CDS | 35.0% | |
| ! | CTCAAAACAGTCTTCTTTTG+CGG | - | chr5_3:616891-616910 | None:intergenic | 35.0% |
| CAATACTGCTAGTATTTCTC+GGG | + | chr5_3:617000-617019 | Msa0789980:CDS | 35.0% | |
| AATGCTTCTGAATCTGATGA+TGG | + | chr5_3:617100-617119 | Msa0789980:CDS | 35.0% | |
| CTATTCTCACATGTTGAAGA+AGG | + | chr5_3:617127-617146 | Msa0789980:CDS | 35.0% | |
| AGAGCGCACAAAACTTTAAA+GGG | + | chr5_3:617199-617218 | Msa0789980:CDS | 35.0% | |
| ! | TGATCTTGTTATCAGGTCAT+TGG | - | chr5_3:617467-617486 | None:intergenic | 35.0% |
| TAGCGATTGAAACCAATCTT+CGG | - | chr5_3:617659-617678 | None:intergenic | 35.0% | |
| !! | CTTTTCAAGACCTTAAGAGT+AGG | + | chr5_3:618131-618150 | Msa0789980:CDS | 35.0% |
| CAATCCAGCAAATACAGATA+TGG | + | chr5_3:618178-618197 | Msa0789980:CDS | 35.0% | |
| ATGGAAAAGCTAATGGCAAA+AGG | + | chr5_3:618197-618216 | Msa0789980:CDS | 35.0% | |
| TCGTACTCTCCTTATAAAGT+AGG | + | chr5_3:618229-618248 | Msa0789980:intron | 35.0% | |
| ACATTGAACAGCAGAAAGAA+AGG | + | chr5_3:618331-618350 | Msa0789980:CDS | 35.0% | |
| CATTGAACAGCAGAAAGAAA+GGG | + | chr5_3:618332-618351 | Msa0789980:CDS | 35.0% | |
| CTTGAACAATCTTTCCAGTT+CGG | - | chr5_3:618376-618395 | None:intergenic | 35.0% | |
| ACTGGAAAGATTGTTCAAGA+AGG | + | chr5_3:618377-618396 | Msa0789980:CDS | 35.0% | |
| !! | TAGCATTGAGTATTGACATC+TGG | - | chr5_3:618484-618503 | None:intergenic | 35.0% |
| GTGATTGGACAATTCAATCT+TGG | + | chr5_3:618724-618743 | Msa0789980:CDS | 35.0% | |
| TTAATCATTCTACAGGATGG+TGG | - | chr5_3:618841-618860 | None:intergenic | 35.0% | |
| GGATTAATCATTCTACAGGA+TGG | - | chr5_3:618844-618863 | None:intergenic | 35.0% | |
| ! | GTTGGTTCAATATGGTTGAT+TGG | - | chr5_3:618986-619005 | None:intergenic | 35.0% |
| CAATAATCACATGGTAAAGC+TGG | + | chr5_3:619090-619109 | Msa0789980:intron | 35.0% | |
| ! | CTTATTCTGCTGCAAAGTTT+TGG | + | chr5_3:619125-619144 | Msa0789980:intron | 35.0% |
| CATATGTAGGCCAATAAGAT+TGG | + | chr5_3:619279-619298 | Msa0789980:intron | 35.0% | |
| ! | AAGCAACTATTTCTTCCTCA+GGG | - | chr5_3:619312-619331 | None:intergenic | 35.0% |
| CAATTCACATGGACATAATC+AGG | + | chr5_3:619332-619351 | Msa0789980:CDS | 35.0% | |
| CTAGAGCCATATTTATCAAG+CGG | + | chr5_3:619360-619379 | Msa0789980:intron | 35.0% | |
| AATTCATGACTGGTGCATTA+GGG | - | chr5_3:619670-619689 | None:intergenic | 35.0% | |
| AAATTCATGACTGGTGCATT+AGG | - | chr5_3:619671-619690 | None:intergenic | 35.0% | |
| ! | ATGTCAAGTTTTGCGTAGTA+GGG | - | chr5_3:619694-619713 | None:intergenic | 35.0% |
| TCTGCATCTTCACATGATTA+AGG | - | chr5_3:619877-619896 | None:intergenic | 35.0% | |
| AAGTTCAAACTTCACAGCTT+TGG | - | chr5_3:620089-620108 | None:intergenic | 35.0% | |
| ! | TGTTGAAGACATTAGCTTAC+AGG | - | chr5_3:620143-620162 | None:intergenic | 35.0% |
| !!! | AAGATACTTTTTTTCCGTGG+GGG | + | chr5_3:620281-620300 | Msa0789980:intron | 35.0% |
| ! | CAGGAAGAATGGATTTACTT+TGG | + | chr5_3:620416-620435 | Msa0789980:intron | 35.0% |
| ! | GAATGGATTTACTTTGGAAG+AGG | + | chr5_3:620422-620441 | Msa0789980:CDS | 35.0% |
| !! | ACATGGTGTTTTTACTGTAG+GGG | - | chr5_3:620491-620510 | None:intergenic | 35.0% |
| TATATAGTCATGATCGACCA+AGG | + | chr5_3:620581-620600 | Msa0789980:intron | 35.0% | |
| ATATAGTCATGATCGACCAA+GGG | + | chr5_3:620582-620601 | Msa0789980:intron | 35.0% | |
| GGAAAACATATTGTGTGCAT+TGG | + | chr5_3:620603-620622 | Msa0789980:intron | 35.0% | |
| TTCATTTCGGAAGATGATTC+AGG | + | chr5_3:620675-620694 | Msa0789980:intron | 35.0% | |
| !! | GGAAAGTCTATTGACTTACA+CGG | + | chr5_3:620705-620724 | Msa0789980:intron | 35.0% |
| TTTATTTCGGAAGATGGTTC+AGG | + | chr5_3:620839-620858 | Msa0789980:intron | 35.0% | |
| TCTACCATCATCTTGATACA+AGG | - | chr5_3:620926-620945 | None:intergenic | 35.0% | |
| TGTGTTTCTTGTAACATCAC+TGG | - | chr5_3:621033-621052 | None:intergenic | 35.0% | |
| CTAAGCTTGGATCTAAAGAT+TGG | + | chr5_3:621102-621121 | Msa0789980:intron | 35.0% | |
| TTTGAATCTTGTGAATGGCA+AGG | + | chr5_3:621135-621154 | Msa0789980:intron | 35.0% | |
| TTGAATCTTGTGAATGGCAA+GGG | + | chr5_3:621136-621155 | Msa0789980:intron | 35.0% | |
| TGAATCAATTGCGCATAGAA+TGG | + | chr5_3:621206-621225 | Msa0789980:intron | 35.0% | |
| ! | TTTTCTCCCAACAGATGTTA+AGG | + | chr5_3:621291-621310 | Msa0789980:intron | 35.0% |
| CATCAGATAGAGTTGAAATC+AGG | - | chr5_3:621318-621337 | None:intergenic | 35.0% | |
| CTGATTTCAACTCTATCTGA+TGG | + | chr5_3:621316-621335 | Msa0789980:CDS | 35.0% | |
| CATGGAGAATGTTCCATAAT+TGG | + | chr5_3:621346-621365 | Msa0789980:CDS | 35.0% | |
| ! | TAATTGATGATCGACATGCT+CGG | - | chr5_3:621435-621454 | None:intergenic | 35.0% |
| !! | ATTATGATTGGTGATGCACT+TGG | + | chr5_3:621451-621470 | Msa0789980:CDS | 35.0% |
| TGGAAGAAATGAAATGCAGA+AGG | + | chr5_3:621471-621490 | Msa0789980:CDS | 35.0% | |
| GTGTTATAAAATAAGGCGAG+GGG | - | chr5_3:621524-621543 | None:intergenic | 35.0% | |
| CGTGTTATAAAATAAGGCGA+GGG | - | chr5_3:621525-621544 | None:intergenic | 35.0% | |
| ACGTGTTATAAAATAAGGCG+AGG | - | chr5_3:621526-621545 | None:intergenic | 35.0% | |
| GTTTCAGATACTTGAGCATT+TGG | + | chr5_3:621632-621651 | Msa0789980:intron | 35.0% | |
| ! | TGAACGATTCCTTTTGCGAT+TGG | - | chr5_3:615253-615272 | None:intergenic | 40.0% |
| ATCGTTCACAGAATCTGTTC+CGG | + | chr5_3:615265-615284 | Msa0789980:CDS | 40.0% | |
| TTAAAGACTTCGGCGAAGAA+TGG | + | chr5_3:615374-615393 | Msa0789980:CDS | 40.0% | |
| ! | TGGTTTCAAGTCACCGATAA+CGG | + | chr5_3:615394-615413 | Msa0789980:CDS | 40.0% |
| CATTTCACCAAACAGCTTCA+AGG | + | chr5_3:615423-615442 | Msa0789980:CDS | 40.0% | |
| ! | CTTCAGTCTCTGACTACTTT+TGG | + | chr5_3:615568-615587 | Msa0789980:CDS | 40.0% |
| GTTGAGTTCTCTTTGTGCTT+TGG | + | chr5_3:615606-615625 | Msa0789980:CDS | 40.0% | |
| TGAGTTCTCTTTGTGCTTTG+GGG | + | chr5_3:615608-615627 | Msa0789980:CDS | 40.0% | |
| AACGAGAACAGTGAATGAAC+CGG | + | chr5_3:615645-615664 | Msa0789980:CDS | 40.0% | |
| TAATCATTCCGGTGTTCTTG+TGG | + | chr5_3:615687-615706 | Msa0789980:CDS | 40.0% | |
| ACAAATTGGAACGACTGTGA+CGG | + | chr5_3:615729-615748 | Msa0789980:CDS | 40.0% | |
| ACGTAAGGAATATGGAAAGC+TGG | + | chr5_3:615807-615826 | Msa0789980:CDS | 40.0% | |
| !! | GTCCCTACGTTGTTATTTGT+AGG | + | chr5_3:616022-616041 | Msa0789980:intron | 40.0% |
| GCATATGCCCTTATAGCAAA+AGG | + | chr5_3:616371-616390 | Msa0789980:CDS | 40.0% | |
| !! | TCGAACGCCTTTTGCTATAA+GGG | - | chr5_3:616381-616400 | None:intergenic | 40.0% |
| !! | ATCGAACGCCTTTTGCTATA+AGG | - | chr5_3:616382-616401 | None:intergenic | 40.0% |
| !! | ATAGCAAAAGGCGTTCGATT+TGG | + | chr5_3:616383-616402 | Msa0789980:CDS | 40.0% |
| TCTGTGGTACTTAAAACCCA+AGG | + | chr5_3:616437-616456 | Msa0789980:CDS | 40.0% | |
| CATGAACACTTTCAACTGCT+TGG | + | chr5_3:616499-616518 | Msa0789980:CDS | 40.0% | |
| ! | TTTTGTAAACGGTAGACCAG+TGG | + | chr5_3:616622-616641 | Msa0789980:CDS | 40.0% |
| CCAGTGGATATGCCAAAAAT+CGG | + | chr5_3:616638-616657 | Msa0789980:CDS | 40.0% | |
| TTATTGCAAGCCCTTAGAGA+GGG | + | chr5_3:616803-616822 | Msa0789980:CDS | 40.0% | |
| TTGTTGTAAGCCCTCTCTAA+GGG | - | chr5_3:616816-616835 | None:intergenic | 40.0% | |
| ! | TTTGTTGTAAGCCCTCTCTA+AGG | - | chr5_3:616817-616836 | None:intergenic | 40.0% |
| !! | ACAGCATAAGAGGCATTATC+AGG | - | chr5_3:616848-616867 | None:intergenic | 40.0% |
| TCAGTATAATGCTCTTCCTG+AGG | - | chr5_3:616977-616996 | None:intergenic | 40.0% | |
| AATAATTCTGACCGCAACAG+TGG | + | chr5_3:617028-617047 | Msa0789980:CDS | 40.0% | |
| GAGATATACTACCACTGTTG+CGG | - | chr5_3:617042-617061 | None:intergenic | 40.0% | |
| CAGAGCGCACAAAACTTTAA+AGG | + | chr5_3:617198-617217 | Msa0789980:CDS | 40.0% | |
| ! | ACTTTAAAGGGTGACAAGAG+TGG | + | chr5_3:617211-617230 | Msa0789980:CDS | 40.0% |
| CTTGTGGAGCTTGATTTCTA+AGG | - | chr5_3:617432-617451 | None:intergenic | 40.0% | |
| ACAGTGAATTTACACTGCTG+TGG | - | chr5_3:617573-617592 | None:intergenic | 40.0% | |
| TACTGACAGAGAACCTAACA+TGG | + | chr5_3:617609-617628 | Msa0789980:CDS | 40.0% | |
| TCTTCTCTCTCCTACTCTTA+AGG | - | chr5_3:618144-618163 | None:intergenic | 40.0% | |
| GAGAGAGAAGAGACTTTCTT+TGG | + | chr5_3:618153-618172 | Msa0789980:CDS | 40.0% | |
| TCTTTCTGCTGTTCAATGTC+TGG | - | chr5_3:618330-618349 | None:intergenic | 40.0% | |
| ! | ACAGCAGAAAGAAAGGGTTT+TGG | + | chr5_3:618338-618357 | Msa0789980:CDS | 40.0% |
| GGAATACTTCAGCAGAATGA+AGG | + | chr5_3:618398-618417 | Msa0789980:CDS | 40.0% | |
| ! | TTGGATGTTGTTGTGCTGAT+TGG | + | chr5_3:618454-618473 | Msa0789980:intron | 40.0% |
| ! | GAAAGTGCAACCAAGTTGTT+AGG | + | chr5_3:618518-618537 | Msa0789980:intron | 40.0% |
| !! | CAGAGGTTGTTGGTTCAATA+TGG | - | chr5_3:618994-619013 | None:intergenic | 40.0% |
| ATAAGTTCTCACCTAAGCAG+AGG | - | chr5_3:619011-619030 | None:intergenic | 40.0% | |
| ! | TTTTTCCCCTCTGAACTTCT+GGG | + | chr5_3:619061-619080 | Msa0789980:intron | 40.0% |
| GGGAACTGTCAATAATCACA+TGG | + | chr5_3:619081-619100 | Msa0789980:intron | 40.0% | |
| TCACATGGTAAAGCTGGAAA+AGG | + | chr5_3:619096-619115 | Msa0789980:intron | 40.0% | |
| GGGGATAACTCCAATCTTAT+TGG | - | chr5_3:619292-619311 | None:intergenic | 40.0% | |
| ! | AGCAACTATTTCTTCCTCAG+GGG | - | chr5_3:619311-619330 | None:intergenic | 40.0% |
| ! | GAAGCAACTATTTCTTCCTC+AGG | - | chr5_3:619313-619332 | None:intergenic | 40.0% |
| TGCAGCATCATTTCAGATAC+TGG | - | chr5_3:619500-619519 | None:intergenic | 40.0% | |
| GTAGTAGGGAAATTCATGAC+TGG | - | chr5_3:619680-619699 | None:intergenic | 40.0% | |
| ! | CATGTCAAGTTTTGCGTAGT+AGG | - | chr5_3:619695-619714 | None:intergenic | 40.0% |
| TGACAGCTGTGTCAATTCAA+TGG | + | chr5_3:619722-619741 | Msa0789980:intron | 40.0% | |
| AATTTATAACGGCATCCAGG+TGG | - | chr5_3:620459-620478 | None:intergenic | 40.0% | |
| ! | GCACACAATATGTTTTCCCT+TGG | - | chr5_3:620601-620620 | None:intergenic | 40.0% |
| AGTCAATAGACTTTCCAGCT+TGG | - | chr5_3:620701-620720 | None:intergenic | 40.0% | |
| !! | TCTATTGACTTACACGGCTT+TGG | + | chr5_3:620711-620730 | Msa0789980:intron | 40.0% |
| !! | TAAACCCTTGGTTCTAAGCT+TGG | + | chr5_3:621089-621108 | Msa0789980:intron | 40.0% |
| AGATCCAAGCTTAGAACCAA+GGG | - | chr5_3:621096-621115 | None:intergenic | 40.0% | |
| TAGATCCAAGCTTAGAACCA+AGG | - | chr5_3:621097-621116 | None:intergenic | 40.0% | |
| TCAGGTCCTTAACATCTGTT+GGG | - | chr5_3:621300-621319 | None:intergenic | 40.0% | |
| ATCAGGTCCTTAACATCTGT+TGG | - | chr5_3:621301-621320 | None:intergenic | 40.0% | |
| ! | TCAACTCTATCTGATGGTGA+TGG | + | chr5_3:621322-621341 | Msa0789980:CDS | 40.0% |
| ! | AATTGATGATCGACATGCTC+GGG | - | chr5_3:621434-621453 | None:intergenic | 40.0% |
| TGCACACCTTTACAAGTATC+TGG | + | chr5_3:621545-621564 | Msa0789980:intron | 40.0% | |
| GAGGTCAGAATTAACAATGC+AGG | + | chr5_3:621734-621753 | Msa0789980:CDS | 40.0% | |
| TTCGACGAGTTCTTTAACGG+CGG | - | chr5_3:615314-615333 | None:intergenic | 45.0% | |
| GTCGAAAATAGCTTAGACGC+CGG | + | chr5_3:615328-615347 | Msa0789980:CDS | 45.0% | |
| AAGAGAGATTTCGATGCTGG+TGG | - | chr5_3:615356-615375 | None:intergenic | 45.0% | |
| TGAAATGCCGCAACCGTTAT+CGG | - | chr5_3:615410-615429 | None:intergenic | 45.0% | |
| AACGTCAAATGCGTTGCAAC+CGG | - | chr5_3:615667-615686 | None:intergenic | 45.0% | |
| CTTTCTGTTGGGTACTCTTC+AGG | + | chr5_3:616349-616368 | Msa0789980:intron | 45.0% | |
| TCTGAGAGCTGCAAAGTTGA+TGG | + | chr5_3:616542-616561 | Msa0789980:CDS | 45.0% | |
| ! | GATGGTTTTCTTTCCAAGCC+TGG | + | chr5_3:616560-616579 | Msa0789980:CDS | 45.0% |
| ! | TTTTCTTTCCAAGCCTGGAC+TGG | + | chr5_3:616565-616584 | Msa0789980:CDS | 45.0% |
| TTTCTTTCCAAGCCTGGACT+GGG | + | chr5_3:616566-616585 | Msa0789980:CDS | 45.0% | |
| !! | ACTGGGTAACGGAAGGAATT+TGG | + | chr5_3:616583-616602 | Msa0789980:CDS | 45.0% |
| !! | CTGGGTAACGGAAGGAATTT+GGG | + | chr5_3:616584-616603 | Msa0789980:CDS | 45.0% |
| !!! | CCGATTTTTGGCATATCCAC+TGG | - | chr5_3:616641-616660 | None:intergenic | 45.0% |
| ! | CTCTCTAAGGGCTTGCAATA+AGG | - | chr5_3:616804-616823 | None:intergenic | 45.0% |
| CTTATTGCAAGCCCTTAGAG+AGG | + | chr5_3:616802-616821 | Msa0789980:CDS | 45.0% | |
| ! | AAACAGTCTTCTTTTGCGGC+AGG | - | chr5_3:616887-616906 | None:intergenic | 45.0% |
| GTCTCCTATCGTAACGAAAC+CGG | + | chr5_3:616931-616950 | Msa0789980:CDS | 45.0% | |
| TCTCAAGGACAGTTGTGAGT+GGG | + | chr5_3:617284-617303 | Msa0789980:CDS | 45.0% | |
| AAGGACAGGCACTTCAGATA+AGG | - | chr5_3:617413-617432 | None:intergenic | 45.0% | |
| ! | GGAGCTTGATTTCTAAGGAC+AGG | - | chr5_3:617427-617446 | None:intergenic | 45.0% |
| TTGCAGCAACGTAATCCTGA+TGG | + | chr5_3:617541-617560 | Msa0789980:CDS | 45.0% | |
| GAGAACCTAACATGGTACGT+TGG | + | chr5_3:617617-617636 | Msa0789980:intron | 45.0% | |
| GCAAACCAACGTACCATGTT+AGG | - | chr5_3:617625-617644 | None:intergenic | 45.0% | |
| CAGTCAAGGATTCCGAAGAT+TGG | + | chr5_3:617644-617663 | Msa0789980:intron | 45.0% | |
| !! | TAGTAACGGGTTAGCCACTA+AGG | - | chr5_3:617827-617846 | None:intergenic | 45.0% |
| CAGGCGATGAACAAATTGGA+GGG | - | chr5_3:618054-618073 | None:intergenic | 45.0% | |
| TTGGGAGAATCTAATCGTGC+AGG | - | chr5_3:618073-618092 | None:intergenic | 45.0% | |
| TTAGATTCTCCCAAGTCCTC+TGG | + | chr5_3:618079-618098 | Msa0789980:CDS | 45.0% | |
| ATCTTCTGACCAGAGGACTT+GGG | - | chr5_3:618091-618110 | None:intergenic | 45.0% | |
| TATCTTCTGACCAGAGGACT+TGG | - | chr5_3:618092-618111 | None:intergenic | 45.0% | |
| GGAGAATATCTTCTGACCAG+AGG | - | chr5_3:618098-618117 | None:intergenic | 45.0% | |
| GAACAATCTTTCCAGTTCGG+TGG | - | chr5_3:618373-618392 | None:intergenic | 45.0% | |
| TGAACCAACAACCTCTGCTT+AGG | + | chr5_3:618997-619016 | Msa0789980:CDS | 45.0% | |
| CAGAAGTTCAGAGGGGAAAA+AGG | - | chr5_3:619062-619081 | None:intergenic | 45.0% | |
| ! | CTTTTTCCCCTCTGAACTTC+TGG | + | chr5_3:619060-619079 | Msa0789980:intron | 45.0% |
| ACAGTTCCCAGAAGTTCAGA+GGG | - | chr5_3:619070-619089 | None:intergenic | 45.0% | |
| AAGATTGGAGTTATCCCCTG+AGG | + | chr5_3:619294-619313 | Msa0789980:CDS | 45.0% | |
| !! | TTTCTAAGGCTGATCATCCG+TGG | - | chr5_3:619586-619605 | None:intergenic | 45.0% |
| GTTGACAAAGCTTGAGCGAT+AGG | + | chr5_3:620047-620066 | Msa0789980:intron | 45.0% | |
| ! | AACACCATGTTTGGAGTCGA+AGG | + | chr5_3:620501-620520 | Msa0789980:CDS | 45.0% |
| TCTACCTTCGACTCCAAACA+TGG | - | chr5_3:620508-620527 | None:intergenic | 45.0% | |
| ! | GGAAGTCTAGCTGACTTACA+CGG | + | chr5_3:620869-620888 | Msa0789980:intron | 45.0% |
| !! | CTATCTGATGGTGATGGTCA+TGG | + | chr5_3:621328-621347 | Msa0789980:CDS | 45.0% |
| ACATTGCACGAACTCTTGGA+GGG | - | chr5_3:621405-621424 | None:intergenic | 45.0% | |
| AACATTGCACGAACTCTTGG+AGG | - | chr5_3:621406-621425 | None:intergenic | 45.0% | |
| TCCAAGAGTTCGTGCAATGT+TGG | + | chr5_3:621405-621424 | Msa0789980:CDS | 45.0% | |
| TCACCATGGAATTGTCCTCA+TGG | + | chr5_3:621666-621685 | Msa0789980:CDS | 45.0% | |
| TCAACTAAATGCCGCATGGT+TGG | - | chr5_3:621696-621715 | None:intergenic | 45.0% | |
| CAAGTCAACTAAATGCCGCA+TGG | - | chr5_3:621700-621719 | None:intergenic | 45.0% | |
| !!! | CATATTTTTTTTTATTAAAT+TGG | + | chr5_3:618435-618454 | Msa0789980:intron | 5.0% |
| ! | CAAGTCACCGATAACGGTTG+CGG | + | chr5_3:615400-615419 | Msa0789980:CDS | 50.0% |
| TCATTCCGGTGTTCTTGTGG+CGG | + | chr5_3:615690-615709 | Msa0789980:CDS | 50.0% | |
| ! | CTTTTCCGCCACAAGAACAC+CGG | - | chr5_3:615698-615717 | None:intergenic | 50.0% |
| TTTGGCTGCACGAACACAAC+TGG | + | chr5_3:616401-616420 | Msa0789980:CDS | 50.0% | |
| !! | GATGCCGGTTTCGTTACGAT+AGG | - | chr5_3:616938-616957 | None:intergenic | 50.0% |
| CTGAGGAATCGCCACATTCA+GGG | - | chr5_3:616960-616979 | None:intergenic | 50.0% | |
| !! | GAAGGGTTGATTCGTGAGAG+TGG | + | chr5_3:617145-617164 | Msa0789980:CDS | 50.0% |
| !! | GGTTGATTCGTGAGAGTGGT+GGG | + | chr5_3:617149-617168 | Msa0789980:CDS | 50.0% |
| !! | GTTGATTCGTGAGAGTGGTG+GGG | + | chr5_3:617150-617169 | Msa0789980:CDS | 50.0% |
| ! | TTGATTCGTGAGAGTGGTGG+GGG | + | chr5_3:617151-617170 | Msa0789980:CDS | 50.0% |
| ! | TGAGAGTGGTGGGGGTTTAA+TGG | + | chr5_3:617159-617178 | Msa0789980:CDS | 50.0% |
| ! | GAGAGTGGTGGGGGTTTAAT+GGG | + | chr5_3:617160-617179 | Msa0789980:CDS | 50.0% |
| TTTGCGCAATCAAGCTACCC+TGG | + | chr5_3:617261-617280 | Msa0789980:CDS | 50.0% | |
| ATCAAGCTACCCTGGTCTCA+AGG | + | chr5_3:617269-617288 | Msa0789980:CDS | 50.0% | |
| CACAACTGTCCTTGAGACCA+GGG | - | chr5_3:617281-617300 | None:intergenic | 50.0% | |
| TCACAACTGTCCTTGAGACC+AGG | - | chr5_3:617282-617301 | None:intergenic | 50.0% | |
| GTCTCAAGGACAGTTGTGAG+TGG | + | chr5_3:617283-617302 | Msa0789980:CDS | 50.0% | |
| CTCAAGGACAGTTGTGAGTG+GGG | + | chr5_3:617285-617304 | Msa0789980:CDS | 50.0% | |
| TCAAGGACAGTTGTGAGTGG+GGG | + | chr5_3:617286-617305 | Msa0789980:CDS | 50.0% | |
| !! | GGTACGTTGGTTTGCAGTCA+AGG | + | chr5_3:617630-617649 | Msa0789980:intron | 50.0% |
| GCAGGCGATGAACAAATTGG+AGG | - | chr5_3:618055-618074 | None:intergenic | 50.0% | |
| CGTGCAGGCGATGAACAAAT+TGG | - | chr5_3:618058-618077 | None:intergenic | 50.0% | |
| TCACTATACGGCTGCAACTC+TGG | + | chr5_3:618293-618312 | Msa0789980:CDS | 50.0% | |
| CTCACCTAAGCAGAGGTTGT+TGG | - | chr5_3:619004-619023 | None:intergenic | 50.0% | |
| CAGTTCCCAGAAGTTCAGAG+GGG | - | chr5_3:619069-619088 | None:intergenic | 50.0% | |
| GACAGTTCCCAGAAGTTCAG+AGG | - | chr5_3:619071-619090 | None:intergenic | 50.0% | |
| ! | TAGTGAGTTGCCACTTGCCA+CGG | + | chr5_3:619566-619585 | Msa0789980:intron | 50.0% |
| GAGGATCTAAATGCACCACC+TGG | + | chr5_3:620441-620460 | Msa0789980:CDS | 50.0% | |
| GAAGATGATTCAGGCCAAGC+TGG | + | chr5_3:620684-620703 | Msa0789980:intron | 50.0% | |
| ! | CTAGCTGACTTACACGGCTT+TGG | + | chr5_3:620875-620894 | Msa0789980:intron | 50.0% |
| GCCAACATTGCACGAACTCT+TGG | - | chr5_3:621409-621428 | None:intergenic | 50.0% | |
| TGGCAGAGCTGAAATCACCA+TGG | + | chr5_3:621652-621671 | Msa0789980:CDS | 50.0% | |
| CTGCCATGAGGACAATTCCA+TGG | - | chr5_3:621672-621691 | None:intergenic | 50.0% | |
| CATGGAATTGTCCTCATGGC+AGG | + | chr5_3:621670-621689 | Msa0789980:CDS | 50.0% | |
| GAGGTCGAGGATGACTTGAC+CGG | - | chr5_3:615287-615306 | None:intergenic | 55.0% | |
| GTTCTTTAACGGCGGAGGAG+AGG | - | chr5_3:615306-615325 | None:intergenic | 55.0% | |
| GACGAGTTCTTTAACGGCGG+AGG | - | chr5_3:615311-615330 | None:intergenic | 55.0% | |
| ! | TCCAAGCCTGGACTGGGTAA+CGG | + | chr5_3:616572-616591 | Msa0789980:CDS | 55.0% |
| TTCCTTCCGTTACCCAGTCC+AGG | - | chr5_3:616581-616600 | None:intergenic | 55.0% | |
| GAAACCGGCATCCCTGAATG+TGG | + | chr5_3:616946-616965 | Msa0789980:CDS | 55.0% | |
| ATCGCCACATTCAGGGATGC+CGG | - | chr5_3:616953-616972 | None:intergenic | 55.0% | |
| CCTGAGGAATCGCCACATTC+AGG | - | chr5_3:616961-616980 | None:intergenic | 55.0% | |
| CCTGAATGTGGCGATTCCTC+AGG | + | chr5_3:616958-616977 | Msa0789980:CDS | 55.0% | |
| !! | GGGTTGATTCGTGAGAGTGG+TGG | + | chr5_3:617148-617167 | Msa0789980:CDS | 55.0% |
| ! | TGGTGGGGGTTTAATGGGCA+AGG | + | chr5_3:617165-617184 | Msa0789980:CDS | 55.0% |
| ! | CTGCTGTGGTTGATGCCATC+AGG | - | chr5_3:617559-617578 | None:intergenic | 55.0% |
| TTCGGAAGATGGTTCAGGCC+AGG | + | chr5_3:620844-620863 | Msa0789980:intron | 55.0% | |
| AGTCAGCTAGACTTCCAGCC+TGG | - | chr5_3:620865-620884 | None:intergenic | 55.0% | |
| TGGAGGGCAGACTGAATCTG+AGG | - | chr5_3:621389-621408 | None:intergenic | 55.0% | |
| ! | GATTTCGATGCTGGTGGCGC+CGG | - | chr5_3:615350-615369 | None:intergenic | 60.0% |
| TCCGTTACCCAGTCCAGGCT+TGG | - | chr5_3:616576-616595 | None:intergenic | 60.0% | |
| !! | AGCCTGGACTGGGTAACGGA+AGG | + | chr5_3:616576-616595 | Msa0789980:CDS | 60.0% |
| GGCTGATCATCCGTGGCAAG+TGG | - | chr5_3:619579-619598 | None:intergenic | 60.0% | |
| GAAGATGGTTCAGGCCAGGC+TGG | + | chr5_3:620848-620867 | Msa0789980:intron | 60.0% | |
| CTCATGGCAGGCCAACCATG+CGG | + | chr5_3:621682-621701 | Msa0789980:CDS | 60.0% | |
| TAACGGCGGAGGAGAGGTCG+AGG | - | chr5_3:615300-615319 | None:intergenic | 65.0% | |
| !! | CGCATGGTTGGCCTGCCATG+AGG | - | chr5_3:621684-621703 | None:intergenic | 65.0% |
| GGCAGCAGCAGCCACCGAAC+TGG | + | chr5_3:618359-618378 | Msa0789980:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 615214 | 621926 | 615214 | ID=Msa0789980;Name=Msa0789980 |
| chr5_3 | mRNA | 615214 | 621926 | 615214 | ID=Msa0789980-mRNA-1;Parent=Msa0789980;Name=Msa0789980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=9|0.9|0.90|1|1|1|11|165|941 |
| chr5_3 | exon | 615214 | 615444 | 615214 | ID=Msa0789980-mRNA-1:exon:172;Parent=Msa0789980-mRNA-1 |
| chr5_3 | exon | 615520 | 615843 | 615520 | ID=Msa0789980-mRNA-1:exon:173;Parent=Msa0789980-mRNA-1 |
| chr5_3 | exon | 616371 | 617630 | 616371 | ID=Msa0789980-mRNA-1:exon:174;Parent=Msa0789980-mRNA-1 |
| chr5_3 | exon | 617950 | 618218 | 617950 | ID=Msa0789980-mRNA-1:exon:175;Parent=Msa0789980-mRNA-1 |
| chr5_3 | exon | 618293 | 618419 | 618293 | ID=Msa0789980-mRNA-1:exon:176;Parent=Msa0789980-mRNA-1 |
| chr5_3 | exon | 618724 | 618792 | 618724 | ID=Msa0789980-mRNA-1:exon:177;Parent=Msa0789980-mRNA-1 |
| chr5_3 | exon | 618945 | 619018 | 618945 | ID=Msa0789980-mRNA-1:exon:178;Parent=Msa0789980-mRNA-1 |
| chr5_3 | exon | 619288 | 619353 | 619288 | ID=Msa0789980-mRNA-1:exon:179;Parent=Msa0789980-mRNA-1 |
| chr5_3 | exon | 620419 | 620522 | 620419 | ID=Msa0789980-mRNA-1:exon:180;Parent=Msa0789980-mRNA-1 |
| chr5_3 | exon | 621305 | 621492 | 621305 | ID=Msa0789980-mRNA-1:exon:181;Parent=Msa0789980-mRNA-1 |
| chr5_3 | exon | 621639 | 621926 | 621639 | ID=Msa0789980-mRNA-1:exon:182;Parent=Msa0789980-mRNA-1 |
| chr5_3 | five_prime_UTR | 615214 | 615222 | 615214 | ID=Msa0789980-mRNA-1:five_prime_utr;Parent=Msa0789980-mRNA-1 |
| chr5_3 | CDS | 615223 | 615444 | 615223 | ID=Msa0789980-mRNA-1:cds;Parent=Msa0789980-mRNA-1 |
| chr5_3 | CDS | 615520 | 615843 | 615520 | ID=Msa0789980-mRNA-1:cds;Parent=Msa0789980-mRNA-1 |
| chr5_3 | CDS | 616371 | 617630 | 616371 | ID=Msa0789980-mRNA-1:cds;Parent=Msa0789980-mRNA-1 |
| chr5_3 | CDS | 617950 | 618218 | 617950 | ID=Msa0789980-mRNA-1:cds;Parent=Msa0789980-mRNA-1 |
| chr5_3 | CDS | 618293 | 618419 | 618293 | ID=Msa0789980-mRNA-1:cds;Parent=Msa0789980-mRNA-1 |
| chr5_3 | CDS | 618724 | 618792 | 618724 | ID=Msa0789980-mRNA-1:cds;Parent=Msa0789980-mRNA-1 |
| chr5_3 | CDS | 618945 | 619018 | 618945 | ID=Msa0789980-mRNA-1:cds;Parent=Msa0789980-mRNA-1 |
| chr5_3 | CDS | 619288 | 619353 | 619288 | ID=Msa0789980-mRNA-1:cds;Parent=Msa0789980-mRNA-1 |
| chr5_3 | CDS | 620419 | 620522 | 620419 | ID=Msa0789980-mRNA-1:cds;Parent=Msa0789980-mRNA-1 |
| chr5_3 | CDS | 621305 | 621492 | 621305 | ID=Msa0789980-mRNA-1:cds;Parent=Msa0789980-mRNA-1 |
| chr5_3 | CDS | 621639 | 621761 | 621639 | ID=Msa0789980-mRNA-1:cds;Parent=Msa0789980-mRNA-1 |
| chr5_3 | three_prime_UTR | 621762 | 621926 | 621762 | ID=Msa0789980-mRNA-1:three_prime_utr;Parent=Msa0789980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
