Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174880 | XP_003591551.2 | 96.406 | 946 | 16 | 2 | 1 | 941 | 1 | 933 | 0.0 | 1869 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174880 | sp|Q941I6|PMS1_ARATH | 56.503 | 938 | 333 | 12 | 7 | 926 | 16 | 896 | 0.0 | 993 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174880 | A0A396JUA8 | 96.406 | 946 | 16 | 2 | 1 | 941 | 1 | 933 | 0.0 | 1869 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011500 | Msa0174880 | 0.803709 | 3.062168e-49 | -8.615850e-47 |
| Msa0012080 | Msa0174880 | 0.801877 | 7.317543e-49 | -8.615850e-47 |
| Msa0032430 | Msa0174880 | 0.801228 | 9.943288e-49 | -8.615850e-47 |
| Msa0054480 | Msa0174880 | 0.807438 | 5.054280e-50 | -8.615850e-47 |
| Msa0070700 | Msa0174880 | 0.811608 | 6.430771e-51 | -8.615850e-47 |
| Msa0079380 | Msa0174880 | 0.807801 | 4.232078e-50 | -8.615850e-47 |
| Msa0118590 | Msa0174880 | 0.810987 | 8.771264e-51 | -8.615850e-47 |
| Msa0129080 | Msa0174880 | 0.946777 | 2.414533e-105 | -8.615850e-47 |
| Msa0144370 | Msa0174880 | 0.806744 | 7.087779e-50 | -8.615850e-47 |
| Msa0172070 | Msa0174880 | 0.800356 | 1.497750e-48 | -8.615850e-47 |
| Msa0174880 | Msa0261340 | 0.806530 | 7.867210e-50 | -8.615850e-47 |
| Msa0174880 | Msa0358890 | 0.800793 | 1.219888e-48 | -8.615850e-47 |
| Msa0174880 | Msa0378720 | 0.807560 | 4.762573e-50 | -8.615850e-47 |
| Msa0174880 | Msa0529890 | 0.815709 | 8.044090e-52 | -8.615850e-47 |
| Msa0174880 | Msa0585560 | 0.819334 | 1.226455e-52 | -8.615850e-47 |
| Msa0174880 | Msa0625720 | 0.819023 | 1.443680e-52 | -8.615850e-47 |
| Msa0174880 | Msa0663390 | 0.809940 | 1.476263e-50 | -8.615850e-47 |
| Msa0174880 | Msa0789980 | 0.941842 | 2.053191e-101 | -8.615850e-47 |
| Msa0174880 | Msa1171710 | 0.805395 | 1.362734e-49 | -8.615850e-47 |
| Msa0174880 | Msa1228200 | 0.802190 | 6.311401e-49 | -8.615850e-47 |
| Msa0174880 | Msa1332070 | 0.801585 | 8.399626e-49 | -8.615850e-47 |
| Msa0174880 | Msa1370720 | 0.950336 | 2.033347e-108 | -8.615850e-47 |
| Msa0174880 | Msa1376770 | 0.805132 | 1.547386e-49 | -8.615850e-47 |
| Msa0174880 | Msa1443760 | 0.940753 | 1.358939e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174880 | MtrunA17_Chr1g0195721 | 96.406 | 946 | 16 | 2 | 1 | 941 | 1 | 933 | 0.0 | 1869 |
| Msa0174880 | MtrunA17_Chr3g0077711 | 32.492 | 317 | 202 | 8 | 8 | 319 | 7 | 316 | 2.77e-36 | 147 |
| Msa0174880 | MtrunA17_Chr5g0407101 | 24.528 | 371 | 245 | 9 | 8 | 350 | 4 | 367 | 8.02e-24 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174880 | AT4G02460.1 | 56.503 | 938 | 333 | 12 | 7 | 926 | 16 | 896 | 0.0 | 993 |
| Msa0174880 | AT4G02460.4 | 54.556 | 845 | 309 | 13 | 100 | 926 | 11 | 798 | 0.0 | 839 |
| Msa0174880 | AT4G02460.2 | 54.534 | 816 | 298 | 12 | 7 | 804 | 16 | 776 | 0.0 | 798 |
| Msa0174880 | AT4G02460.3 | 51.729 | 723 | 276 | 12 | 100 | 804 | 11 | 678 | 0.0 | 643 |
| Msa0174880 | AT4G09140.1 | 32.722 | 327 | 202 | 9 | 1 | 319 | 22 | 338 | 1.11e-37 | 152 |
| Msa0174880 | AT4G35520.3 | 27.249 | 378 | 230 | 10 | 6 | 358 | 2 | 359 | 1.11e-27 | 121 |
| Msa0174880 | AT4G35520.3 | 28.054 | 221 | 120 | 7 | 734 | 934 | 920 | 1121 | 7.84e-11 | 67.0 |
| Msa0174880 | AT4G35520.2 | 28.161 | 348 | 211 | 9 | 6 | 328 | 2 | 335 | 1.42e-27 | 121 |
| Msa0174880 | AT4G35520.2 | 28.054 | 221 | 120 | 7 | 734 | 934 | 947 | 1148 | 8.52e-11 | 66.6 |
| Msa0174880 | AT4G35520.6 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 4.00e-23 | 106 |
| Msa0174880 | AT4G35520.6 | 28.054 | 221 | 120 | 7 | 734 | 934 | 910 | 1111 | 8.44e-11 | 66.6 |
| Msa0174880 | AT4G35520.4 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 4.23e-23 | 106 |
| Msa0174880 | AT4G35520.1 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 5.58e-23 | 106 |
| Msa0174880 | AT4G35520.1 | 28.054 | 221 | 120 | 7 | 734 | 934 | 922 | 1123 | 9.53e-11 | 66.6 |
| Msa0174880 | AT4G35520.5 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 6.19e-23 | 106 |
| Msa0174880 | AT4G35520.5 | 27.586 | 232 | 121 | 7 | 734 | 934 | 910 | 1125 | 5.78e-11 | 67.4 |
| Msa0174880 | AT4G35520.7 | 27.586 | 232 | 121 | 7 | 734 | 934 | 710 | 925 | 7.10e-11 | 67.0 |
Find 194 sgRNAs with CRISPR-Local
Find 407 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATTTATCATTGGTAAAT+TGG | 0.152350 | 1_4:-60655475 | Msa0174880:CDS |
| CTTCAGTCTCTGACTACTTT+TGG | 0.163663 | 1_4:-60658648 | Msa0174880:CDS |
| ACTGGGTAACGGAAGGAATT+TGG | 0.197107 | 1_4:-60657636 | Msa0174880:CDS |
| TTGAGTTCTCTTTGTGCTTT+GGG | 0.201918 | 1_4:-60658609 | Msa0174880:CDS |
| TTGAAATGATTTCAGGTTCT+TGG | 0.223911 | 1_4:-60658711 | Msa0174880:intron |
| GCTTAGAAGTTTCATTAATT+TGG | 0.226550 | 1_4:+60656718 | None:intergenic |
| TTAAACTCTTTGCTTCTTAC+AGG | 0.234975 | 1_4:+60658441 | None:intergenic |
| CAGAGCGCACAAAACTTTAA+AGG | 0.246050 | 1_4:-60657021 | Msa0174880:CDS |
| AAGAAAATTGCGCGACAAAT+TGG | 0.251802 | 1_4:-60658501 | Msa0174880:CDS |
| GGGGATAACTCCAATCTTAT+TGG | 0.270951 | 1_4:+60654930 | None:intergenic |
| TTGTCTATAACTACCAATTA+TGG | 0.281795 | 1_4:+60652860 | None:intergenic |
| TCTTCTCTTTCCTACTCTTA+AGG | 0.288994 | 1_4:+60656078 | None:intergenic |
| CCTGAGGAATCGCCACATTC+AGG | 0.292943 | 1_4:+60657261 | None:intergenic |
| CATGGAGAATGTTCCATAAT+TGG | 0.303790 | 1_4:-60652873 | Msa0174880:CDS |
| GTTGAGTTCTCTTTGTGCTT+TGG | 0.311062 | 1_4:-60658610 | Msa0174880:CDS |
| CAGAGGTTGTTGGTTCAATA+TGG | 0.311266 | 1_4:+60655228 | None:intergenic |
| AATGCAGGAGTAATTAATTA+TGG | 0.318351 | 1_4:-60652470 | Msa0174880:exon |
| CGGAATATACGTAAGGAATA+TGG | 0.320588 | 1_4:-60658417 | Msa0174880:CDS |
| GAAAGAGAAGAGACTTTCTT+TGG | 0.322390 | 1_4:-60656066 | Msa0174880:CDS |
| CTCTCTAAGGGCTTGCAATA+AGG | 0.337830 | 1_4:+60657418 | None:intergenic |
| TACAGCAACAAAATTGTTAA+GGG | 0.349954 | 1_4:+60656863 | None:intergenic |
| TCTGAGAGCTGCAAAGTTGA+TGG | 0.350885 | 1_4:-60657677 | Msa0174880:CDS |
| TCTTTCTGCTGTTCAATGTC+TGG | 0.350891 | 1_4:+60655892 | None:intergenic |
| CTGGGTAACGGAAGGAATTT+GGG | 0.351699 | 1_4:-60657635 | Msa0174880:CDS |
| GTTTCAGATACTTGAGCATT+TGG | 0.356986 | 1_4:-60652587 | Msa0174880:intron |
| TTCAATCTTGGATTTATCAT+TGG | 0.358205 | 1_4:-60655483 | Msa0174880:CDS |
| TTACAGCAACAAAATTGTTA+AGG | 0.359742 | 1_4:+60656862 | None:intergenic |
| CATTTGACGTTTAATCATTC+CGG | 0.364164 | 1_4:-60658540 | Msa0174880:CDS |
| GTGATTGGACAATTCAATCT+TGG | 0.365478 | 1_4:-60655495 | Msa0174880:CDS |
| CGTGCAGGCGATGAACAAAT+TGG | 0.368469 | 1_4:+60656164 | None:intergenic |
| AGATTTATTCATTGTGGATC+AGG | 0.374375 | 1_4:-60655448 | Msa0174880:intron |
| TATATCCATTTCAGGAAGAA+TGG | 0.378291 | 1_4:-60653814 | Msa0174880:intron |
| AACAAGATCATATCTTCATT+TGG | 0.379755 | 1_4:-60656742 | Msa0174880:CDS |
| CAATTCACATGGACATAATC+AGG | 0.380435 | 1_4:-60654887 | Msa0174880:intron |
| ATAGCAAAAGGCGTTCGATT+TGG | 0.383212 | 1_4:-60657836 | Msa0174880:CDS |
| TCACTATACGGCTGCAACTC+TGG | 0.383524 | 1_4:-60655926 | Msa0174880:CDS |
| TTTATCAGATTGTTGCTAGA+TGG | 0.385028 | 1_4:+60656218 | None:intergenic |
| ACAGCATAAGAGGCATTATC+AGG | 0.385292 | 1_4:+60657374 | None:intergenic |
| GTTGGTTCAATATGGTTGAT+TGG | 0.388187 | 1_4:+60655236 | None:intergenic |
| AACGTCAAATGCGTTGCAAC+CGG | 0.389282 | 1_4:+60658552 | None:intergenic |
| GCAAACCAACGTACCATGTT+AGG | 0.389360 | 1_4:+60656597 | None:intergenic |
| CTTGAACAATCTTTCCAGTT+CGG | 0.390899 | 1_4:+60655846 | None:intergenic |
| TGATCTTGTTATCAGGTCAT+TGG | 0.393473 | 1_4:+60656755 | None:intergenic |
| AAATACTACAGAGCATGTTT+TGG | 0.394023 | 1_4:-60656198 | Msa0174880:CDS |
| TTTGTTGTAAGCCCTCTCTA+AGG | 0.396357 | 1_4:+60657405 | None:intergenic |
| TATCTTCTGACCAGAGGACT+TGG | 0.403945 | 1_4:+60656130 | None:intergenic |
| TGAAATGCCGCAACCGTTAT+CGG | 0.405670 | 1_4:+60658809 | None:intergenic |
| CTTGTGGAGCTTGATTTCTA+AGG | 0.406330 | 1_4:+60656790 | None:intergenic |
| CATGAACACTTTCAACTGCT+TGG | 0.406413 | 1_4:-60657720 | Msa0174880:CDS |
| GTCTCCTATCGTAACGAAAC+CGG | 0.407956 | 1_4:-60657288 | Msa0174880:CDS |
| GCCAACATTGCACGAACTCT+TGG | 0.408478 | 1_4:+60652813 | None:intergenic |
| GGTTGATTCGTGAGAGTGGT+GGG | 0.409407 | 1_4:-60657070 | Msa0174880:CDS |
| CAATCCAGCAAATACAGATA+TGG | 0.412593 | 1_4:-60656041 | Msa0174880:CDS |
| GACCATTAGCGCAGTACATC+AGG | 0.412609 | 1_4:+60652304 | None:intergenic |
| TAGAATACCTTGAAGCTGTT+TGG | 0.415285 | 1_4:+60658786 | None:intergenic |
| GAAGATATGATCTTGTTATC+AGG | 0.417275 | 1_4:+60656748 | None:intergenic |
| TTTCTTTCCAAGCCTGGACT+GGG | 0.421406 | 1_4:-60657653 | Msa0174880:CDS |
| GAAGCAACTATTTCTTCCTC+AGG | 0.429926 | 1_4:+60654909 | None:intergenic |
| TTTGGCTGCACGAACACAAC+TGG | 0.430222 | 1_4:-60657818 | Msa0174880:CDS |
| CAGGAAGAATGGATTTACTT+TGG | 0.430284 | 1_4:-60653803 | Msa0174880:CDS |
| CATATGTAGGCCAATAAGAT+TGG | 0.432843 | 1_4:-60654940 | Msa0174880:intron |
| TCAATACTGCTAGTATTTCT+CGG | 0.433938 | 1_4:-60657220 | Msa0174880:CDS |
| TTCAGAAGCATTATTAGAAT+CGG | 0.437195 | 1_4:+60657130 | None:intergenic |
| AAATTCATTGACAGCATAAG+AGG | 0.438687 | 1_4:+60657364 | None:intergenic |
| TTGGTTCAATATGGTTGATT+GGG | 0.438724 | 1_4:+60655237 | None:intergenic |
| TCAATGTAACTCCTGATAAG+AGG | 0.441411 | 1_4:-60657466 | Msa0174880:CDS |
| ACAGCAGAAAGAAAGGGTTT+TGG | 0.441429 | 1_4:-60655881 | Msa0174880:CDS |
| CTATTCTCACATGTTGAAGA+AGG | 0.444593 | 1_4:-60657092 | Msa0174880:CDS |
| TCCGTTACCCAGTCCAGGCT+TGG | 0.447116 | 1_4:+60657646 | None:intergenic |
| GGCAGCAGCAGCCACCGAAC+TGG | 0.447748 | 1_4:-60655860 | Msa0174880:CDS |
| TACAGATATGGAAAAGCTAA+TGG | 0.451831 | 1_4:-60656029 | Msa0174880:CDS |
| GGACAGACTTTAATTTATAA+CGG | 0.452106 | 1_4:+60653752 | None:intergenic |
| TATATCTCTCAATGAGCATA+AGG | 0.453173 | 1_4:-60657165 | Msa0174880:CDS |
| TTGATTCGTGAGAGTGGTGG+GGG | 0.453706 | 1_4:-60657068 | Msa0174880:CDS |
| TTCCTTCCGTTACCCAGTCC+AGG | 0.459170 | 1_4:+60657641 | None:intergenic |
| GTAAAATTCATGATTGCAAT+GGG | 0.461439 | 1_4:+60657512 | None:intergenic |
| CATCAGATAGAGTTGAAATC+AGG | 0.463046 | 1_4:+60652904 | None:intergenic |
| ATCGTTCACAGAATCTGTTC+CGG | 0.465982 | 1_4:-60658951 | Msa0174880:CDS |
| TTAAAGACTTCGGCGAAGAA+TGG | 0.467001 | 1_4:-60658842 | Msa0174880:CDS |
| CTGAGGAATCGCCACATTCA+GGG | 0.467227 | 1_4:+60657262 | None:intergenic |
| TTTAAGAGAGATTTCGATGC+TGG | 0.469837 | 1_4:+60658860 | None:intergenic |
| CATTTCACCAAACAGCTTCA+AGG | 0.471334 | 1_4:-60658793 | Msa0174880:intron |
| CTGCTGTGGTTGATGCCATC+AGG | 0.472176 | 1_4:+60656663 | None:intergenic |
| AGAGCGCACAAAACTTTAAA+GGG | 0.476324 | 1_4:-60657020 | Msa0174880:CDS |
| CTCACCTAAGCAGAGGTTGT+TGG | 0.476645 | 1_4:+60655218 | None:intergenic |
| TAATCATTCCGGTGTTCTTG+TGG | 0.477100 | 1_4:-60658529 | Msa0174880:CDS |
| CAATACTGCTAGTATTTCTC+GGG | 0.477701 | 1_4:-60657219 | Msa0174880:CDS |
| TGTCGATCATCAATTATGAT+TGG | 0.479343 | 1_4:-60652780 | Msa0174880:CDS |
| TGGTTTCAAGTCACCGATAA+CGG | 0.480127 | 1_4:-60658822 | Msa0174880:CDS |
| CGTAAAATTCATGATTGCAA+TGG | 0.483954 | 1_4:+60657511 | None:intergenic |
| GTTGATTCGTGAGAGTGGTG+GGG | 0.490939 | 1_4:-60657069 | Msa0174880:CDS |
| ATCATCAAACCAATCGCAAA+AGG | 0.493056 | 1_4:-60658975 | Msa0174880:CDS |
| ACATTGAACAGCAGAAAGAA+AGG | 0.494491 | 1_4:-60655888 | Msa0174880:CDS |
| GGGTTGATTCGTGAGAGTGG+TGG | 0.494804 | 1_4:-60657071 | Msa0174880:CDS |
| CCTGAATGTGGCGATTCCTC+AGG | 0.494938 | 1_4:-60657261 | Msa0174880:CDS |
| GCATATGCCCTTATAGCAAA+AGG | 0.495988 | 1_4:-60657848 | Msa0174880:CDS |
| CATGGAATTGTCCTCATGGC+AGG | 0.498761 | 1_4:-60652549 | Msa0174880:CDS |
| GAATGGATTTACTTTGGAAG+AGG | 0.499091 | 1_4:-60653797 | Msa0174880:CDS |
| TGAACCAACAACCTCTGCTT+AGG | 0.499577 | 1_4:-60655222 | Msa0174880:intron |
| GATAACATCATAACAGTGCT+TGG | 0.500424 | 1_4:-60657743 | Msa0174880:CDS |
| GGATCAAGATTTATTCATTG+TGG | 0.501006 | 1_4:-60655454 | Msa0174880:CDS |
| GATTTCGATGCTGGTGGCGC+CGG | 0.501956 | 1_4:+60658869 | None:intergenic |
| AACATTGCACGAACTCTTGG+AGG | 0.503231 | 1_4:+60652816 | None:intergenic |
| TTAGATTCTCCCAAGTCCTC+TGG | 0.504018 | 1_4:-60656140 | Msa0174880:CDS |
| ACTTGACGAAAATTCATAAG+AGG | 0.505723 | 1_4:-60652504 | Msa0174880:CDS |
| TCTCAAGGACAGTTGTGAGT+GGG | 0.510002 | 1_4:-60656935 | Msa0174880:CDS |
| ATGGAAAAGCTAATGGCAAA+AGG | 0.512412 | 1_4:-60656022 | Msa0174880:intron |
| TTGGTTTCAGTATTTACTTG+TGG | 0.514585 | 1_4:+60656774 | None:intergenic |
| CTCAAGGACAGTTGTGAGTG+GGG | 0.515053 | 1_4:-60656934 | Msa0174880:CDS |
| TTGATGATTTGCGATTCAAT+CGG | 0.515545 | 1_4:+60658990 | None:intergenic |
| GAGGTCAGAATTAACAATGC+AGG | 0.518258 | 1_4:-60652485 | Msa0174880:CDS |
| AAGCAACTATTTCTTCCTCA+GGG | 0.518792 | 1_4:+60654910 | None:intergenic |
| GGAGCTTGATTTCTAAGGAC+AGG | 0.519756 | 1_4:+60656795 | None:intergenic |
| ATGCTGTCAATGAATTTATG+TGG | 0.520548 | 1_4:-60657358 | Msa0174880:CDS |
| TTTAATTTATAACGGCATCC+AGG | 0.521120 | 1_4:+60653760 | None:intergenic |
| GTCTCAAGGACAGTTGTGAG+TGG | 0.522054 | 1_4:-60656936 | Msa0174880:CDS |
| AATTGATGATCGACATGCTC+GGG | 0.528848 | 1_4:+60652788 | None:intergenic |
| TCCAAGAGTTCGTGCAATGT+TGG | 0.531112 | 1_4:-60652814 | Msa0174880:CDS |
| TCCAAGCCTGGACTGGGTAA+CGG | 0.532883 | 1_4:-60657647 | Msa0174880:CDS |
| CATTGAACAGCAGAAAGAAA+GGG | 0.533665 | 1_4:-60655887 | Msa0174880:CDS |
| ACGTAAGGAATATGGAAAGC+TGG | 0.534231 | 1_4:-60658409 | Msa0174880:CDS |
| ATCGCCACATTCAGGGATGC+CGG | 0.534608 | 1_4:+60657269 | None:intergenic |
| CTATCTGATGGTGATGGTCA+TGG | 0.537313 | 1_4:-60652891 | Msa0174880:CDS |
| GAACAATCTTTCCAGTTCGG+TGG | 0.538298 | 1_4:+60655849 | None:intergenic |
| TCACAACTGTCCTTGAGACC+AGG | 0.539057 | 1_4:+60656940 | None:intergenic |
| AAGGACAGGCACTTCAGATA+AGG | 0.540336 | 1_4:+60656809 | None:intergenic |
| GGAATACTTCAGCAGAATGA+AGG | 0.543403 | 1_4:-60655821 | Msa0174880:intron |
| TTGAAAAGAAAATTGCATGT+TGG | 0.544226 | 1_4:+60656103 | None:intergenic |
| TCAACTAAATGCCGCATGGT+TGG | 0.546469 | 1_4:+60652526 | None:intergenic |
| AACACCATGTTTGGAGTCGA+AGG | 0.548138 | 1_4:-60653718 | Msa0174880:intron |
| AACGAGAACAGTGAATGAAC+CGG | 0.548570 | 1_4:-60658571 | Msa0174880:CDS |
| TTGTTGTAAGCCCTCTCTAA+GGG | 0.551985 | 1_4:+60657406 | None:intergenic |
| GAAGGGTTGATTCGTGAGAG+TGG | 0.553809 | 1_4:-60657074 | Msa0174880:CDS |
| AATGCTTCTGAATCTGATGA+TGG | 0.555834 | 1_4:-60657119 | Msa0174880:CDS |
| GACGAGTTCTTTAACGGCGG+AGG | 0.557460 | 1_4:+60658908 | None:intergenic |
| TTGGGAGAATCTAATCGTGC+AGG | 0.560739 | 1_4:+60656149 | None:intergenic |
| CAAGTCACCGATAACGGTTG+CGG | 0.561953 | 1_4:-60658816 | Msa0174880:CDS |
| ATCAAGCTACCCTGGTCTCA+AGG | 0.562398 | 1_4:-60656950 | Msa0174880:CDS |
| TAACGGCGGAGGAGAGGTCG+AGG | 0.563344 | 1_4:+60658919 | None:intergenic |
| AAGAGAGATTTCGATGCTGG+TGG | 0.566861 | 1_4:+60658863 | None:intergenic |
| CTCAGATATACATAATGACA+TGG | 0.567030 | 1_4:+60657694 | None:intergenic |
| ATCTTCTGACCAGAGGACTT+GGG | 0.570934 | 1_4:+60656131 | None:intergenic |
| TAATTGATGATCGACATGCT+CGG | 0.574476 | 1_4:+60652787 | None:intergenic |
| TAAGAAGCAAAGAGTTTAAG+CGG | 0.579709 | 1_4:-60658437 | Msa0174880:CDS |
| TCACCATGGAATTGTCCTCA+TGG | 0.580634 | 1_4:-60652553 | Msa0174880:CDS |
| TTATTGCAAGCCCTTAGAGA+GGG | 0.581606 | 1_4:-60657416 | Msa0174880:CDS |
| TGAGTTCTCTTTGTGCTTTG+GGG | 0.584399 | 1_4:-60658608 | Msa0174880:CDS |
| TTCGACGAGTTCTTTAACGG+CGG | 0.588864 | 1_4:+60658905 | None:intergenic |
| TATTCTCACATGTTGAAGAA+GGG | 0.589142 | 1_4:-60657091 | Msa0174880:CDS |
| ATTATGATTGGTGATGCACT+TGG | 0.592485 | 1_4:-60652768 | Msa0174880:CDS |
| GTTTAAGCGGAATATACGTA+AGG | 0.594722 | 1_4:-60658424 | Msa0174880:CDS |
| ACAAATTGGAACGACTGTGA+CGG | 0.594875 | 1_4:-60658487 | Msa0174880:CDS |
| TCAAGGACAGTTGTGAGTGG+GGG | 0.595006 | 1_4:-60656933 | Msa0174880:CDS |
| GAGGATCTAAATGCACCACC+TGG | 0.595531 | 1_4:-60653778 | Msa0174880:CDS |
| CTGATTTCAACTCTATCTGA+TGG | 0.597097 | 1_4:-60652903 | Msa0174880:CDS |
| ACTGGAAAGATTGTTCAAGA+AGG | 0.599565 | 1_4:-60655842 | Msa0174880:CDS |
| AATAGTTGCTTCAATTCACA+TGG | 0.600812 | 1_4:-60654898 | Msa0174880:CDS |
| TTGCAGCAACGTAATCCTGA+TGG | 0.603672 | 1_4:-60656678 | Msa0174880:CDS |
| GAAATCTCTCTTAAAGACTT+CGG | 0.605620 | 1_4:-60658852 | Msa0174880:CDS |
| GAGGTCGAGGATGACTTGAC+CGG | 0.606410 | 1_4:+60658932 | None:intergenic |
| ACTTTAAAGGGTGACAAGAG+TGG | 0.606920 | 1_4:-60657008 | Msa0174880:CDS |
| GTTCTTTAACGGCGGAGGAG+AGG | 0.606990 | 1_4:+60658913 | None:intergenic |
| TCAACTCTATCTGATGGTGA+TGG | 0.607257 | 1_4:-60652897 | Msa0174880:CDS |
| TCATTCCGGTGTTCTTGTGG+CGG | 0.607818 | 1_4:-60658526 | Msa0174880:CDS |
| TGGAAGAAATGAAATGCAGA+AGG | 0.612549 | 1_4:-60652748 | Msa0174880:intron |
| CACAACTGTCCTTGAGACCA+GGG | 0.613211 | 1_4:+60656941 | None:intergenic |
| TCTACCTTCGACTCCAAACA+TGG | 0.613546 | 1_4:+60653714 | None:intergenic |
| CTTATTGCAAGCCCTTAGAG+AGG | 0.613621 | 1_4:-60657417 | Msa0174880:CDS |
| TTTGCGCAATCAAGCTACCC+TGG | 0.613771 | 1_4:-60656958 | Msa0174880:CDS |
| GCAGGCGATGAACAAATTGG+AGG | 0.613983 | 1_4:+60656167 | None:intergenic |
| TGGAGGGCAGACTGAATCTG+AGG | 0.614764 | 1_4:+60652833 | None:intergenic |
| GTCGAAAATAGCTTAGACGC+CGG | 0.617734 | 1_4:-60658888 | Msa0174880:CDS |
| AATAATTCTGACCGCAACAG+TGG | 0.621125 | 1_4:-60657191 | Msa0174880:CDS |
| AGCCTGGACTGGGTAACGGA+AGG | 0.623995 | 1_4:-60657643 | Msa0174880:CDS |
| CAGGCGATGAACAAATTGGA+GGG | 0.629188 | 1_4:+60656168 | None:intergenic |
| CTGCCATGAGGACAATTCCA+TGG | 0.639214 | 1_4:+60652550 | None:intergenic |
| ACATTGCACGAACTCTTGGA+GGG | 0.639683 | 1_4:+60652817 | None:intergenic |
| CAAGTCAACTAAATGCCGCA+TGG | 0.640175 | 1_4:+60652522 | None:intergenic |
| GAAACCGGCATCCCTGAATG+TGG | 0.644771 | 1_4:-60657273 | Msa0174880:CDS |
| ATAAGTTCTCACCTAAGCAG+AGG | 0.645938 | 1_4:+60655211 | None:intergenic |
| TACTGACAGAGAACCTAACA+TGG | 0.647355 | 1_4:-60656610 | Msa0174880:intron |
| TCAGATATACATAATGACAT+GGG | 0.650966 | 1_4:+60657695 | None:intergenic |
| AGCAACTATTTCTTCCTCAG+GGG | 0.653963 | 1_4:+60654911 | None:intergenic |
| TCTGTGGTACTTAAAACCCA+AGG | 0.654508 | 1_4:-60657782 | Msa0174880:CDS |
| GGAGAATATCTTCTGACCAG+AGG | 0.658458 | 1_4:+60656124 | None:intergenic |
| CGCATGGTTGGCCTGCCATG+AGG | 0.658661 | 1_4:+60652538 | None:intergenic |
| CTCATGGCAGGCCAACCATG+CGG | 0.662792 | 1_4:-60652537 | Msa0174880:CDS |
| AATTTATAACGGCATCCAGG+TGG | 0.663899 | 1_4:+60653763 | None:intergenic |
| GAGATATACTACCACTGTTG+CGG | 0.665026 | 1_4:+60657180 | None:intergenic |
| TCAGTATAATGCTCTTCCTG+AGG | 0.671539 | 1_4:+60657245 | None:intergenic |
| ACAGTGAATTTACACTGCTG+TGG | 0.676981 | 1_4:+60656649 | None:intergenic |
| GATGCCGGTTTCGTTACGAT+AGG | 0.680524 | 1_4:+60657284 | None:intergenic |
| TGGCAGAGCTGAAATCACCA+TGG | 0.715825 | 1_4:-60652567 | Msa0174880:CDS |
| AAGATTGGAGTTATCCCCTG+AGG | 0.743451 | 1_4:-60654925 | Msa0174880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAGAATATTAATAATGT+GGG | - | chr1_4:60653274-60653293 | Msa0174880:intron | 10.0% |
| !!! | CATTTAGAATATTAATAATG+TGG | - | chr1_4:60653273-60653292 | Msa0174880:intron | 15.0% |
| !!! | TTTAGAATATTAATAATGTG+GGG | - | chr1_4:60653275-60653294 | Msa0174880:intron | 15.0% |
| !!! | TATTACTTTCTACAATTTTA+AGG | - | chr1_4:60653305-60653324 | Msa0174880:intron | 15.0% |
| !!! | TAATTTTTTTAGTCACTATA+CGG | - | chr1_4:60655379-60655398 | Msa0174880:intron | 15.0% |
| !!! | TAAATATGATTTTAGTATGA+TGG | + | chr1_4:60655713-60655732 | None:intergenic | 15.0% |
| !!! | TATATTTAATCTGAAATTGT+AGG | + | chr1_4:60655758-60655777 | None:intergenic | 15.0% |
| !! | TAAATATATCATGTATTCAA+AGG | - | chr1_4:60655770-60655789 | Msa0174880:intron | 15.0% |
| !!! | ATTATCTTTTTGTGTATTTA+AGG | - | chr1_4:60656716-60656735 | Msa0174880:CDS | 15.0% |
| !!! | TTCAATTTTTGCATTTATTT+CGG | - | chr1_4:60657924-60657943 | Msa0174880:intron | 15.0% |
| !! | AATTTATTACACTGAAATAT+TGG | - | chr1_4:60658082-60658101 | Msa0174880:intron | 15.0% |
| !!! | TACAATCTAAAAATAACTTT+TGG | + | chr1_4:60658882-60658901 | None:intergenic | 15.0% |
| !!! | TATTTTTAGATTGTAAGTTA+AGG | - | chr1_4:60658887-60658906 | Msa0174880:CDS | 15.0% |
| !!! | ATTTTTAGATTGTAAGTTAA+GGG | - | chr1_4:60658888-60658907 | Msa0174880:CDS | 15.0% |
| !!! | CTAATACTACATTTTTAAAG+GGG | + | chr1_4:60652560-60652579 | None:intergenic | 20.0% |
| !!! | CCTAATACTACATTTTTAAA+GGG | + | chr1_4:60652561-60652580 | None:intergenic | 20.0% |
| !!! | CCTTTAAAAATGTAGTATTA+GGG | - | chr1_4:60652559-60652578 | Msa0174880:CDS | 20.0% |
| !!! | ATTTTGTTTGAAATGATTTC+AGG | - | chr1_4:60652599-60652618 | Msa0174880:intron | 20.0% |
| !! | AATTTAGGTATTTACTCAAA+TGG | + | chr1_4:60653010-60653029 | None:intergenic | 20.0% |
| !! | ATTTGAGTAAATACCTAAAT+TGG | - | chr1_4:60653009-60653028 | Msa0174880:intron | 20.0% |
| !! | TTAGAATATTAATAATGTGG+GGG | - | chr1_4:60653276-60653295 | Msa0174880:intron | 20.0% |
| !! | AACAAAAAATAAATCCCAAT+AGG | + | chr1_4:60653358-60653377 | None:intergenic | 20.0% |
| !! | TATGATATATTCTTTCTGTT+GGG | - | chr1_4:60653436-60653455 | Msa0174880:intron | 20.0% |
| !!! | AGACAGTATTTTTTTGTAAA+CGG | - | chr1_4:60653709-60653728 | Msa0174880:intron | 20.0% |
| !!! | AAAAATATTTTCCTCTTATC+AGG | + | chr1_4:60653865-60653884 | None:intergenic | 20.0% |
| !!! | ATCATTTTCTGATTTAGTAA+CGG | + | chr1_4:60654939-60654958 | None:intergenic | 20.0% |
| !!! | TATGATTTTCCTACTTTATA+AGG | + | chr1_4:60655339-60655358 | None:intergenic | 20.0% |
| !!! | AAAACATTGATTTGGTTTTA+TGG | + | chr1_4:60655664-60655683 | None:intergenic | 20.0% |
| !!! | TAAAACCAAATCAATGTTTT+TGG | - | chr1_4:60655664-60655683 | Msa0174880:intron | 20.0% |
| !!! | CTTTGATATTATGTTTTAAC+AGG | - | chr1_4:60655800-60655819 | Msa0174880:intron | 20.0% |
| !!! | AAAAAAAACATGATTTGTGA+TGG | - | chr1_4:60656002-60656021 | Msa0174880:intron | 20.0% |
| !! | CTAATAAAAATTGCATATGT+AGG | - | chr1_4:60656364-60656383 | Msa0174880:intron | 20.0% |
| !!! | ATCAATATGTTCATTTTCTA+AGG | + | chr1_4:60656698-60656717 | None:intergenic | 20.0% |
| !! | AAAAACATGCATATGTATAT+TGG | - | chr1_4:60656917-60656936 | Msa0174880:CDS | 20.0% |
| !!! | ATATGTTTGAAATCATTACT+TGG | - | chr1_4:60656947-60656966 | Msa0174880:CDS | 20.0% |
| !! | ATCAAATTCAACAAGTTATT+TGG | + | chr1_4:60657023-60657042 | None:intergenic | 20.0% |
| !!! | TTGATTTCATATGATGTTTT+TGG | - | chr1_4:60657038-60657057 | Msa0174880:CDS | 20.0% |
| !! | ACATTTGCATAATTTATGAA+AGG | - | chr1_4:60657313-60657332 | Msa0174880:CDS | 20.0% |
| !! | ATAGAATCCATAAAATTCAA+AGG | + | chr1_4:60657630-60657649 | None:intergenic | 20.0% |
| !! | GATTAATTTAATGATTCTGT+TGG | - | chr1_4:60657654-60657673 | Msa0174880:CDS | 20.0% |
| !!! | TTCAATTTTTGCATTCATTT+CGG | - | chr1_4:60657760-60657779 | Msa0174880:CDS | 20.0% |
| !!! | AATGTCATTTGATATTTGAT+TGG | - | chr1_4:60657841-60657860 | Msa0174880:CDS | 20.0% |
| !! | TTAGTTGAACAATAAATGTA+AGG | - | chr1_4:60658667-60658686 | Msa0174880:CDS | 20.0% |
| !! | CCCTTTAAAAATGTAGTATT+AGG | - | chr1_4:60652558-60652577 | Msa0174880:CDS | 25.0% |
| !! | CCCTAATACTACATTTTTAA+AGG | + | chr1_4:60652562-60652581 | None:intergenic | 25.0% |
| !! | ACAATTTCAAGTACCAATTT+AGG | + | chr1_4:60653025-60653044 | None:intergenic | 25.0% |
| ! | AATTGGTACTTGAAATTGTA+AGG | - | chr1_4:60653026-60653045 | Msa0174880:intron | 25.0% |
| ! | TGTAATTTCTTAGATCGTTT+AGG | + | chr1_4:60653086-60653105 | None:intergenic | 25.0% |
| ! | GATAACCTATACATACAAAT+CGG | - | chr1_4:60653217-60653236 | Msa0174880:intron | 25.0% |
| ! | TGATTAGCATTATGCAATTT+CGG | - | chr1_4:60653246-60653265 | Msa0174880:intron | 25.0% |
| ! | GTATGATATATTCTTTCTGT+TGG | - | chr1_4:60653435-60653454 | Msa0174880:intron | 25.0% |
| !!! | TTTTAGAGAATCATTTCCTT+GGG | + | chr1_4:60653554-60653573 | None:intergenic | 25.0% |
| ! | TCAGATATACATAATGACAT+GGG | + | chr1_4:60653625-60653644 | None:intergenic | 25.0% |
| ! | GTAAAATTCATGATTGCAAT+GGG | + | chr1_4:60653808-60653827 | None:intergenic | 25.0% |
| !! | CATTGCAATCATGAATTTTA+CGG | - | chr1_4:60653807-60653826 | Msa0174880:intron | 25.0% |
| !!! | TTCAGAAGCATTATTAGAAT+CGG | + | chr1_4:60654190-60654209 | None:intergenic | 25.0% |
| ! | TACAGCAACAAAATTGTTAA+GGG | + | chr1_4:60654457-60654476 | None:intergenic | 25.0% |
| ! | TTACAGCAACAAAATTGTTA+AGG | + | chr1_4:60654458-60654477 | None:intergenic | 25.0% |
| ! | AACAAGATCATATCTTCATT+TGG | - | chr1_4:60654575-60654594 | Msa0174880:intron | 25.0% |
| ! | GCTTAGAAGTTTCATTAATT+TGG | + | chr1_4:60654602-60654621 | None:intergenic | 25.0% |
| !! | TCATTTTCTGATTTAGTAAC+GGG | + | chr1_4:60654938-60654957 | None:intergenic | 25.0% |
| ! | TTGAAAAGAAAATTGCATGT+TGG | + | chr1_4:60655217-60655236 | None:intergenic | 25.0% |
| !!! | TCAATGCTATTTTAGTAAGT+AGG | - | chr1_4:60655593-60655612 | Msa0174880:intron | 25.0% |
| !!! | CAATGCTATTTTAGTAAGTA+GGG | - | chr1_4:60655594-60655613 | Msa0174880:intron | 25.0% |
| !! | GTATTCCAAAAACATTGATT+TGG | + | chr1_4:60655672-60655691 | None:intergenic | 25.0% |
| !!! | ATTATGTTTTAACAGGTGAT+TGG | - | chr1_4:60655807-60655826 | Msa0174880:intron | 25.0% |
| ! | TTCAATCTTGGATTTATCAT+TGG | - | chr1_4:60655834-60655853 | Msa0174880:CDS | 25.0% |
| ! | TGGATTTATCATTGGTAAAT+TGG | - | chr1_4:60655842-60655861 | Msa0174880:CDS | 25.0% |
| !! | ATATGGATTAATCATTCTAC+AGG | + | chr1_4:60655946-60655965 | None:intergenic | 25.0% |
| ! | AGCAAAAGAATGCATTTATA+TGG | + | chr1_4:60655963-60655982 | None:intergenic | 25.0% |
| ! | GATCATGAACAAATAAAGAA+AGG | + | chr1_4:60656335-60656354 | None:intergenic | 25.0% |
| ! | TCTGACAATAACACAAAATA+TGG | + | chr1_4:60656499-60656518 | None:intergenic | 25.0% |
| ! | AGAAACTATATTTCATCAAC+AGG | - | chr1_4:60656516-60656535 | Msa0174880:intron | 25.0% |
| ! | AAATTCAACAAGTTATTTGG+TGG | + | chr1_4:60657020-60657039 | None:intergenic | 25.0% |
| !! | TTTAATTTCTAATGTGCATG+TGG | + | chr1_4:60657293-60657312 | None:intergenic | 25.0% |
| ! | CATAATTTATGAAAGGTTGT+TGG | - | chr1_4:60657320-60657339 | Msa0174880:CDS | 25.0% |
| ! | AGTGACTGAATCAAATATAA+TGG | + | chr1_4:60657351-60657370 | None:intergenic | 25.0% |
| ! | GCAACTAAAGCATAAAATAT+TGG | + | chr1_4:60657437-60657456 | None:intergenic | 25.0% |
| ! | ATTTGCATTATATCCATTTC+AGG | - | chr1_4:60657495-60657514 | Msa0174880:CDS | 25.0% |
| !! | GGACAGACTTTAATTTATAA+CGG | + | chr1_4:60657568-60657587 | None:intergenic | 25.0% |
| ! | AAATGTTTCAAATAAACCCT+TGG | - | chr1_4:60658175-60658194 | Msa0174880:intron | 25.0% |
| ! | ACATATTTGAATCTTGTGAA+TGG | - | chr1_4:60658228-60658247 | Msa0174880:intron | 25.0% |
| ! | TTGTCTATAACTACCAATTA+TGG | + | chr1_4:60658460-60658479 | None:intergenic | 25.0% |
| ! | AATGCAGGAGTAATTAATTA+TGG | - | chr1_4:60658847-60658866 | Msa0174880:CDS | 25.0% |
| ! | TTGATGATTTGCGATTCAAT+CGG | + | chr1_4:60652330-60652349 | None:intergenic | 30.0% |
| ! | ATTTTCGACGAGTTCTTTAA+CGG | + | chr1_4:60652418-60652437 | None:intergenic | 30.0% |
| GAAATCTCTCTTAAAGACTT+CGG | - | chr1_4:60652465-60652484 | Msa0174880:exon | 30.0% | |
| !! | TTGAAATGATTTCAGGTTCT+TGG | - | chr1_4:60652606-60652625 | Msa0174880:intron | 30.0% |
| CATTTGACGTTTAATCATTC+CGG | - | chr1_4:60652777-60652796 | Msa0174880:CDS | 30.0% | |
| TTAAACTCTTTGCTTCTTAC+AGG | + | chr1_4:60652879-60652898 | None:intergenic | 30.0% | |
| TAAGAAGCAAAGAGTTTAAG+CGG | - | chr1_4:60652880-60652899 | Msa0174880:CDS | 30.0% | |
| GTCCTACAAATAATAACGTA+GGG | + | chr1_4:60653128-60653147 | None:intergenic | 30.0% | |
| AGTCCTACAAATAATAACGT+AGG | + | chr1_4:60653129-60653148 | None:intergenic | 30.0% | |
| TGTAGGACTATAATGACATT+AGG | - | chr1_4:60653140-60653159 | Msa0174880:intron | 30.0% | |
| TAGGAATAGAATGGAGTAAT+TGG | + | chr1_4:60653339-60653358 | None:intergenic | 30.0% | |
| TTACTCCATTCTATTCCTAT+TGG | - | chr1_4:60653340-60653359 | Msa0174880:intron | 30.0% | |
| TACTCCATTCTATTCCTATT+GGG | - | chr1_4:60653341-60653360 | Msa0174880:intron | 30.0% | |
| AAATCCCAATAGGAATAGAA+TGG | + | chr1_4:60653348-60653367 | None:intergenic | 30.0% | |
| CAGTGAAACAGGAATAAAAA+AGG | + | chr1_4:60653402-60653421 | None:intergenic | 30.0% | |
| ATTAACAAACTCAGTGAAAC+AGG | + | chr1_4:60653413-60653432 | None:intergenic | 30.0% | |
| TGGCAAAAATGTAAAATCTG+TGG | - | chr1_4:60653519-60653538 | Msa0174880:intron | 30.0% | |
| !! | CTTTTAGAGAATCATTTCCT+TGG | + | chr1_4:60653555-60653574 | None:intergenic | 30.0% |
| CTCAGATATACATAATGACA+TGG | + | chr1_4:60653626-60653645 | None:intergenic | 30.0% | |
| ! | TTCACAAGTTTTCCGATTTT+TGG | + | chr1_4:60653751-60653770 | None:intergenic | 30.0% |
| CGTAAAATTCATGATTGCAA+TGG | + | chr1_4:60653809-60653828 | None:intergenic | 30.0% | |
| ! | TTGACATCATATGCTTTTGT+TGG | + | chr1_4:60653835-60653854 | None:intergenic | 30.0% |
| AAATTCATTGACAGCATAAG+AGG | + | chr1_4:60653956-60653975 | None:intergenic | 30.0% | |
| ATGCTGTCAATGAATTTATG+TGG | - | chr1_4:60653959-60653978 | Msa0174880:intron | 30.0% | |
| TCAATACTGCTAGTATTTCT+CGG | - | chr1_4:60654097-60654116 | Msa0174880:intron | 30.0% | |
| TATATCTCTCAATGAGCATA+AGG | - | chr1_4:60654152-60654171 | Msa0174880:intron | 30.0% | |
| TATTCTCACATGTTGAAGAA+GGG | - | chr1_4:60654226-60654245 | Msa0174880:intron | 30.0% | |
| TTGGTTTCAGTATTTACTTG+TGG | + | chr1_4:60654546-60654565 | None:intergenic | 30.0% | |
| ! | GAAGATATGATCTTGTTATC+AGG | + | chr1_4:60654572-60654591 | None:intergenic | 30.0% |
| ! | TGCAAATTTTCAATCTCACT+TGG | + | chr1_4:60654624-60654643 | None:intergenic | 30.0% |
| !! | TTTAAGTTGAAGTTCCTTAG+TGG | - | chr1_4:60654908-60654927 | Msa0174880:CDS | 30.0% |
| AGTATGAAACAAAGACAAAG+TGG | + | chr1_4:60655009-60655028 | None:intergenic | 30.0% | |
| TTTATCAGATTGTTGCTAGA+TGG | + | chr1_4:60655102-60655121 | None:intergenic | 30.0% | |
| ! | AAATACTACAGAGCATGTTT+TGG | - | chr1_4:60655119-60655138 | Msa0174880:intron | 30.0% |
| ! | TTTTCCATATCTGTATTTGC+TGG | + | chr1_4:60655283-60655302 | None:intergenic | 30.0% |
| TACAGATATGGAAAAGCTAA+TGG | - | chr1_4:60655288-60655307 | Msa0174880:intron | 30.0% | |
| CTTAGAAAAACCTAACAACT+TGG | + | chr1_4:60655629-60655648 | None:intergenic | 30.0% | |
| !!! | ACATTGATTTGGTTTTATGG+TGG | + | chr1_4:60655661-60655680 | None:intergenic | 30.0% |
| !! | AGTATGATGGATTAGATATG+CGG | + | chr1_4:60655700-60655719 | None:intergenic | 30.0% |
| GGATCAAGATTTATTCATTG+TGG | - | chr1_4:60655863-60655882 | Msa0174880:CDS | 30.0% | |
| AGATTTATTCATTGTGGATC+AGG | - | chr1_4:60655869-60655888 | Msa0174880:CDS | 30.0% | |
| CTGTAGTTTCAAAAACATAG+TGG | + | chr1_4:60655901-60655920 | None:intergenic | 30.0% | |
| TTGGTTCAATATGGTTGATT+GGG | + | chr1_4:60656083-60656102 | None:intergenic | 30.0% | |
| TGTTGAGTTCAAAGTTACAA+AGG | - | chr1_4:60656261-60656280 | Msa0174880:CDS | 30.0% | |
| AATAGTTGCTTCAATTCACA+TGG | - | chr1_4:60656419-60656438 | Msa0174880:intron | 30.0% | |
| ATATCACCGCTTGATAAATA+TGG | + | chr1_4:60656467-60656486 | None:intergenic | 30.0% | |
| GAAAGTGAATAAAGAGATCA+TGG | + | chr1_4:60656621-60656640 | None:intergenic | 30.0% | |
| ATTATCAATTAAAGCAGCAC+AGG | + | chr1_4:60656850-60656869 | None:intergenic | 30.0% | |
| CAACTAGTTGAACAATTTGA+GGG | + | chr1_4:60657215-60657234 | None:intergenic | 30.0% | |
| ACAACTAGTTGAACAATTTG+AGG | + | chr1_4:60657216-60657235 | None:intergenic | 30.0% | |
| TAAGCTAATGTCTTCAACAA+TGG | - | chr1_4:60657242-60657261 | Msa0174880:CDS | 30.0% | |
| !!! | AGTAAGATACTTTTTTTCCG+TGG | - | chr1_4:60657376-60657395 | Msa0174880:CDS | 30.0% |
| !!! | GTAAGATACTTTTTTTCCGT+GGG | - | chr1_4:60657377-60657396 | Msa0174880:CDS | 30.0% |
| !!! | TAAGATACTTTTTTTCCGTG+GGG | - | chr1_4:60657378-60657397 | Msa0174880:CDS | 30.0% |
| !! | AATTTTAAAGATAACCCCCA+CGG | + | chr1_4:60657396-60657415 | None:intergenic | 30.0% |
| !!! | TGCGTTTTTTTGCATCTTTA+TGG | - | chr1_4:60657454-60657473 | Msa0174880:CDS | 30.0% |
| TATATCCATTTCAGGAAGAA+TGG | - | chr1_4:60657503-60657522 | Msa0174880:CDS | 30.0% | |
| TAAATCCATTCTTCCTGAAA+TGG | + | chr1_4:60657511-60657530 | None:intergenic | 30.0% | |
| ! | TTTAATTTATAACGGCATCC+AGG | + | chr1_4:60657560-60657579 | None:intergenic | 30.0% |
| !! | AACATGGTGTTTTTACTGTA+GGG | + | chr1_4:60657590-60657609 | None:intergenic | 30.0% |
| !! | AAACATGGTGTTTTTACTGT+AGG | + | chr1_4:60657591-60657610 | None:intergenic | 30.0% |
| TACAGTAAAAACACCATGTT+TGG | - | chr1_4:60657590-60657609 | Msa0174880:CDS | 30.0% | |
| ! | GGTAGAACCTTTGAATTTTA+TGG | - | chr1_4:60657620-60657639 | Msa0174880:CDS | 30.0% |
| ! | TATGTGATTCTTTTGTGCAT+TGG | - | chr1_4:60657865-60657884 | Msa0174880:intron | 30.0% |
| TTTGCATTTATTTCGGAAGA+TGG | - | chr1_4:60657931-60657950 | Msa0174880:intron | 30.0% | |
| TTGATACAAGGTTATGTGAA+TGG | + | chr1_4:60658012-60658031 | None:intergenic | 30.0% | |
| ATAACCTTGTATCAAGATGA+TGG | - | chr1_4:60658017-60658036 | Msa0174880:intron | 30.0% | |
| ! | ATCAAGATGATGGTAGAAAA+TGG | - | chr1_4:60658027-60658046 | Msa0174880:intron | 30.0% |
| GAAATTCTGTATTAGAAACG+AGG | - | chr1_4:60658104-60658123 | Msa0174880:intron | 30.0% | |
| ! | CTCATTTCTTATTTCGTTTC+TGG | + | chr1_4:60658154-60658173 | None:intergenic | 30.0% |
| TGTCGATCATCAATTATGAT+TGG | - | chr1_4:60658537-60658556 | Msa0174880:CDS | 30.0% | |
| TGTGCACGTGTTATAAAATA+AGG | + | chr1_4:60658629-60658648 | None:intergenic | 30.0% | |
| ACTAAACCAGATACTTGTAA+AGG | + | chr1_4:60658652-60658671 | None:intergenic | 30.0% | |
| ACTTGACGAAAATTCATAAG+AGG | - | chr1_4:60658813-60658832 | Msa0174880:CDS | 30.0% | |
| ! | CTCTCAAACTTCACATTTTA+TGG | - | chr1_4:60658958-60658977 | Msa0174880:CDS | 30.0% |
| ! | TCAAACTTCACATTTTATGG+AGG | - | chr1_4:60658961-60658980 | Msa0174880:CDS | 30.0% |
| ! | CAAACTTCACATTTTATGGA+GGG | - | chr1_4:60658962-60658981 | Msa0174880:CDS | 30.0% |
| ATCATCAAACCAATCGCAAA+AGG | - | chr1_4:60652342-60652361 | Msa0174880:three_prime_UTR | 35.0% | |
| TTTAAGAGAGATTTCGATGC+TGG | + | chr1_4:60652460-60652479 | None:intergenic | 35.0% | |
| TAGAATACCTTGAAGCTGTT+TGG | + | chr1_4:60652534-60652553 | None:intergenic | 35.0% | |
| !! | CTGACTACTTTTGGATTTAG+AGG | - | chr1_4:60652678-60652697 | Msa0174880:intron | 35.0% |
| ! | TACTTTTGGATTTAGAGGTG+AGG | - | chr1_4:60652683-60652702 | Msa0174880:intron | 35.0% |
| TTGAGTTCTCTTTGTGCTTT+GGG | - | chr1_4:60652708-60652727 | Msa0174880:intron | 35.0% | |
| AAGAAAATTGCGCGACAAAT+TGG | - | chr1_4:60652816-60652835 | Msa0174880:CDS | 35.0% | |
| GTTTAAGCGGAATATACGTA+AGG | - | chr1_4:60652893-60652912 | Msa0174880:CDS | 35.0% | |
| CGGAATATACGTAAGGAATA+TGG | - | chr1_4:60652900-60652919 | Msa0174880:CDS | 35.0% | |
| GTCCCTACGTTATTATTTGT+AGG | - | chr1_4:60653123-60653142 | Msa0174880:intron | 35.0% | |
| GGACTATAATGACATTAGGT+TGG | - | chr1_4:60653144-60653163 | Msa0174880:intron | 35.0% | |
| !! | GACATTAGGTTGGTAATATC+AGG | - | chr1_4:60653154-60653173 | Msa0174880:intron | 35.0% |
| !! | CTTCACCGATTTGTATGTAT+AGG | + | chr1_4:60653225-60653244 | None:intergenic | 35.0% |
| GATAACATCATAACAGTGCT+TGG | - | chr1_4:60653574-60653593 | Msa0174880:intron | 35.0% | |
| TCAATGTAACTCCTGATAAG+AGG | - | chr1_4:60653851-60653870 | Msa0174880:intron | 35.0% | |
| ! | CTCAAAACAGTCTTCTTTTG+CGG | + | chr1_4:60653989-60654008 | None:intergenic | 35.0% |
| CAATACTGCTAGTATTTCTC+GGG | - | chr1_4:60654098-60654117 | Msa0174880:intron | 35.0% | |
| AATGCTTCTGAATCTGATGA+TGG | - | chr1_4:60654198-60654217 | Msa0174880:intron | 35.0% | |
| CTATTCTCACATGTTGAAGA+AGG | - | chr1_4:60654225-60654244 | Msa0174880:intron | 35.0% | |
| AGAGCGCACAAAACTTTAAA+GGG | - | chr1_4:60654297-60654316 | Msa0174880:intron | 35.0% | |
| ! | TGATCTTGTTATCAGGTCAT+TGG | + | chr1_4:60654565-60654584 | None:intergenic | 35.0% |
| TAGCGATTGAAACCAATCTT+CGG | + | chr1_4:60654757-60654776 | None:intergenic | 35.0% | |
| !! | CTTTTCAAGACCTTAAGAGT+AGG | - | chr1_4:60655229-60655248 | Msa0174880:CDS | 35.0% |
| TCTTCTCTTTCCTACTCTTA+AGG | + | chr1_4:60655242-60655261 | None:intergenic | 35.0% | |
| GAAAGAGAAGAGACTTTCTT+TGG | - | chr1_4:60655251-60655270 | Msa0174880:CDS | 35.0% | |
| CAATCCAGCAAATACAGATA+TGG | - | chr1_4:60655276-60655295 | Msa0174880:CDS | 35.0% | |
| ATGGAAAAGCTAATGGCAAA+AGG | - | chr1_4:60655295-60655314 | Msa0174880:intron | 35.0% | |
| TCGTACTCTCCTTATAAAGT+AGG | - | chr1_4:60655327-60655346 | Msa0174880:intron | 35.0% | |
| ACATTGAACAGCAGAAAGAA+AGG | - | chr1_4:60655429-60655448 | Msa0174880:intron | 35.0% | |
| CATTGAACAGCAGAAAGAAA+GGG | - | chr1_4:60655430-60655449 | Msa0174880:intron | 35.0% | |
| CTTGAACAATCTTTCCAGTT+CGG | + | chr1_4:60655474-60655493 | None:intergenic | 35.0% | |
| ACTGGAAAGATTGTTCAAGA+AGG | - | chr1_4:60655475-60655494 | Msa0174880:CDS | 35.0% | |
| !! | TAGCATTGAGTATTGACATC+TGG | + | chr1_4:60655582-60655601 | None:intergenic | 35.0% |
| GTGATTGGACAATTCAATCT+TGG | - | chr1_4:60655822-60655841 | Msa0174880:CDS | 35.0% | |
| TTAATCATTCTACAGGATGG+TGG | + | chr1_4:60655939-60655958 | None:intergenic | 35.0% | |
| GGATTAATCATTCTACAGGA+TGG | + | chr1_4:60655942-60655961 | None:intergenic | 35.0% | |
| ! | GTTGGTTCAATATGGTTGAT+TGG | + | chr1_4:60656084-60656103 | None:intergenic | 35.0% |
| CAATAATCACATGGTAAAGC+TGG | - | chr1_4:60656188-60656207 | Msa0174880:CDS | 35.0% | |
| ! | CTTATTCTGCTGCAAAGTTT+TGG | - | chr1_4:60656223-60656242 | Msa0174880:CDS | 35.0% |
| CATATGTAGGCCAATAAGAT+TGG | - | chr1_4:60656377-60656396 | Msa0174880:intron | 35.0% | |
| ! | AAGCAACTATTTCTTCCTCA+GGG | + | chr1_4:60656410-60656429 | None:intergenic | 35.0% |
| CAATTCACATGGACATAATC+AGG | - | chr1_4:60656430-60656449 | Msa0174880:intron | 35.0% | |
| CTAGAGCCATATTTATCAAG+CGG | - | chr1_4:60656458-60656477 | Msa0174880:intron | 35.0% | |
| AATTCATGACTGGTGCATTA+GGG | + | chr1_4:60656768-60656787 | None:intergenic | 35.0% | |
| AAATTCATGACTGGTGCATT+AGG | + | chr1_4:60656769-60656788 | None:intergenic | 35.0% | |
| ! | ATGTCAAGTTTTGCGTAGTA+GGG | + | chr1_4:60656792-60656811 | None:intergenic | 35.0% |
| TCTGCATCTTCACATGATTA+AGG | + | chr1_4:60656975-60656994 | None:intergenic | 35.0% | |
| AAGTTCAAACTTCACAGCTT+TGG | + | chr1_4:60657187-60657206 | None:intergenic | 35.0% | |
| ! | TGTTGAAGACATTAGCTTAC+AGG | + | chr1_4:60657241-60657260 | None:intergenic | 35.0% |
| !!! | AAGATACTTTTTTTCCGTGG+GGG | - | chr1_4:60657379-60657398 | Msa0174880:CDS | 35.0% |
| ! | CAGGAAGAATGGATTTACTT+TGG | - | chr1_4:60657514-60657533 | Msa0174880:CDS | 35.0% |
| ! | GAATGGATTTACTTTGGAAG+AGG | - | chr1_4:60657520-60657539 | Msa0174880:CDS | 35.0% |
| !! | ACATGGTGTTTTTACTGTAG+GGG | + | chr1_4:60657589-60657608 | None:intergenic | 35.0% |
| TATATAGTCATGATCGACCA+AGG | - | chr1_4:60657679-60657698 | Msa0174880:CDS | 35.0% | |
| ATATAGTCATGATCGACCAA+GGG | - | chr1_4:60657680-60657699 | Msa0174880:CDS | 35.0% | |
| GGAAAACATATTGTGTGCAT+TGG | - | chr1_4:60657701-60657720 | Msa0174880:CDS | 35.0% | |
| TTCATTTCGGAAGATGATTC+AGG | - | chr1_4:60657773-60657792 | Msa0174880:CDS | 35.0% | |
| !! | GGAAAGTCTATTGACTTACA+CGG | - | chr1_4:60657803-60657822 | Msa0174880:CDS | 35.0% |
| TTTATTTCGGAAGATGGTTC+AGG | - | chr1_4:60657937-60657956 | Msa0174880:intron | 35.0% | |
| TCTACCATCATCTTGATACA+AGG | + | chr1_4:60658024-60658043 | None:intergenic | 35.0% | |
| TGTGTTTCTTGTAACATCAC+TGG | + | chr1_4:60658131-60658150 | None:intergenic | 35.0% | |
| CTAAGCTTGGATCTAAAGAT+TGG | - | chr1_4:60658200-60658219 | Msa0174880:intron | 35.0% | |
| TTTGAATCTTGTGAATGGCA+AGG | - | chr1_4:60658233-60658252 | Msa0174880:intron | 35.0% | |
| TTGAATCTTGTGAATGGCAA+GGG | - | chr1_4:60658234-60658253 | Msa0174880:intron | 35.0% | |
| TGAATCAATTGCGCATAGAA+TGG | - | chr1_4:60658304-60658323 | Msa0174880:intron | 35.0% | |
| ! | TTTTCTCCCAACAGATGTTA+AGG | - | chr1_4:60658389-60658408 | Msa0174880:intron | 35.0% |
| CATCAGATAGAGTTGAAATC+AGG | + | chr1_4:60658416-60658435 | None:intergenic | 35.0% | |
| CTGATTTCAACTCTATCTGA+TGG | - | chr1_4:60658414-60658433 | Msa0174880:CDS | 35.0% | |
| CATGGAGAATGTTCCATAAT+TGG | - | chr1_4:60658444-60658463 | Msa0174880:CDS | 35.0% | |
| ! | TAATTGATGATCGACATGCT+CGG | + | chr1_4:60658533-60658552 | None:intergenic | 35.0% |
| !! | ATTATGATTGGTGATGCACT+TGG | - | chr1_4:60658549-60658568 | Msa0174880:CDS | 35.0% |
| TGGAAGAAATGAAATGCAGA+AGG | - | chr1_4:60658569-60658588 | Msa0174880:CDS | 35.0% | |
| GTGTTATAAAATAAGGCGAG+GGG | + | chr1_4:60658622-60658641 | None:intergenic | 35.0% | |
| CGTGTTATAAAATAAGGCGA+GGG | + | chr1_4:60658623-60658642 | None:intergenic | 35.0% | |
| ACGTGTTATAAAATAAGGCG+AGG | + | chr1_4:60658624-60658643 | None:intergenic | 35.0% | |
| GTTTCAGATACTTGAGCATT+TGG | - | chr1_4:60658730-60658749 | Msa0174880:intron | 35.0% | |
| ! | TGAACGATTCCTTTTGCGAT+TGG | + | chr1_4:60652354-60652373 | None:intergenic | 40.0% |
| ATCGTTCACAGAATCTGTTC+CGG | - | chr1_4:60652366-60652385 | Msa0174880:three_prime_UTR | 40.0% | |
| TTAAAGACTTCGGCGAAGAA+TGG | - | chr1_4:60652475-60652494 | Msa0174880:exon | 40.0% | |
| ! | TGGTTTCAAGTCACCGATAA+CGG | - | chr1_4:60652495-60652514 | Msa0174880:CDS | 40.0% |
| CATTTCACCAAACAGCTTCA+AGG | - | chr1_4:60652524-60652543 | Msa0174880:CDS | 40.0% | |
| ! | CTTCAGTCTCTGACTACTTT+TGG | - | chr1_4:60652669-60652688 | Msa0174880:intron | 40.0% |
| GTTGAGTTCTCTTTGTGCTT+TGG | - | chr1_4:60652707-60652726 | Msa0174880:intron | 40.0% | |
| TGAGTTCTCTTTGTGCTTTG+GGG | - | chr1_4:60652709-60652728 | Msa0174880:intron | 40.0% | |
| AACGAGAACAGTGAATGAAC+CGG | - | chr1_4:60652746-60652765 | Msa0174880:intron | 40.0% | |
| TAATCATTCCGGTGTTCTTG+TGG | - | chr1_4:60652788-60652807 | Msa0174880:CDS | 40.0% | |
| ACAAATTGGAACGACTGTGA+CGG | - | chr1_4:60652830-60652849 | Msa0174880:CDS | 40.0% | |
| ACGTAAGGAATATGGAAAGC+TGG | - | chr1_4:60652908-60652927 | Msa0174880:CDS | 40.0% | |
| GCATATGCCCTTATAGCAAA+AGG | - | chr1_4:60653469-60653488 | Msa0174880:intron | 40.0% | |
| !! | TCGAACGCCTTTTGCTATAA+GGG | + | chr1_4:60653479-60653498 | None:intergenic | 40.0% |
| !! | ATCGAACGCCTTTTGCTATA+AGG | + | chr1_4:60653480-60653499 | None:intergenic | 40.0% |
| !! | ATAGCAAAAGGCGTTCGATT+TGG | - | chr1_4:60653481-60653500 | Msa0174880:intron | 40.0% |
| TCTGTGGTACTTAAAACCCA+AGG | - | chr1_4:60653535-60653554 | Msa0174880:intron | 40.0% | |
| CATGAACACTTTCAACTGCT+TGG | - | chr1_4:60653597-60653616 | Msa0174880:intron | 40.0% | |
| ! | TTTTGTAAACGGTAGACCAG+TGG | - | chr1_4:60653720-60653739 | Msa0174880:CDS | 40.0% |
| CCAGTGGATATGCCAAAAAT+CGG | - | chr1_4:60653736-60653755 | Msa0174880:CDS | 40.0% | |
| TTATTGCAAGCCCTTAGAGA+GGG | - | chr1_4:60653901-60653920 | Msa0174880:intron | 40.0% | |
| TTGTTGTAAGCCCTCTCTAA+GGG | + | chr1_4:60653914-60653933 | None:intergenic | 40.0% | |
| ! | TTTGTTGTAAGCCCTCTCTA+AGG | + | chr1_4:60653915-60653934 | None:intergenic | 40.0% |
| !! | ACAGCATAAGAGGCATTATC+AGG | + | chr1_4:60653946-60653965 | None:intergenic | 40.0% |
| TCAGTATAATGCTCTTCCTG+AGG | + | chr1_4:60654075-60654094 | None:intergenic | 40.0% | |
| AATAATTCTGACCGCAACAG+TGG | - | chr1_4:60654126-60654145 | Msa0174880:intron | 40.0% | |
| GAGATATACTACCACTGTTG+CGG | + | chr1_4:60654140-60654159 | None:intergenic | 40.0% | |
| CAGAGCGCACAAAACTTTAA+AGG | - | chr1_4:60654296-60654315 | Msa0174880:intron | 40.0% | |
| ! | ACTTTAAAGGGTGACAAGAG+TGG | - | chr1_4:60654309-60654328 | Msa0174880:intron | 40.0% |
| CTTGTGGAGCTTGATTTCTA+AGG | + | chr1_4:60654530-60654549 | None:intergenic | 40.0% | |
| ACAGTGAATTTACACTGCTG+TGG | + | chr1_4:60654671-60654690 | None:intergenic | 40.0% | |
| TACTGACAGAGAACCTAACA+TGG | - | chr1_4:60654707-60654726 | Msa0174880:intron | 40.0% | |
| TCTTTCTGCTGTTCAATGTC+TGG | + | chr1_4:60655428-60655447 | None:intergenic | 40.0% | |
| ! | ACAGCAGAAAGAAAGGGTTT+TGG | - | chr1_4:60655436-60655455 | Msa0174880:intron | 40.0% |
| GGAATACTTCAGCAGAATGA+AGG | - | chr1_4:60655496-60655515 | Msa0174880:CDS | 40.0% | |
| ! | TTGGATGTTGTTGTGCTGAT+TGG | - | chr1_4:60655552-60655571 | Msa0174880:intron | 40.0% |
| ! | GAAAGTGCAACCAAGTTGTT+AGG | - | chr1_4:60655616-60655635 | Msa0174880:intron | 40.0% |
| !! | CAGAGGTTGTTGGTTCAATA+TGG | + | chr1_4:60656092-60656111 | None:intergenic | 40.0% |
| ATAAGTTCTCACCTAAGCAG+AGG | + | chr1_4:60656109-60656128 | None:intergenic | 40.0% | |
| ! | TTTTTCCCCTCTGAACTTCT+GGG | - | chr1_4:60656159-60656178 | Msa0174880:CDS | 40.0% |
| GGGAACTGTCAATAATCACA+TGG | - | chr1_4:60656179-60656198 | Msa0174880:CDS | 40.0% | |
| TCACATGGTAAAGCTGGAAA+AGG | - | chr1_4:60656194-60656213 | Msa0174880:CDS | 40.0% | |
| GGGGATAACTCCAATCTTAT+TGG | + | chr1_4:60656390-60656409 | None:intergenic | 40.0% | |
| ! | AGCAACTATTTCTTCCTCAG+GGG | + | chr1_4:60656409-60656428 | None:intergenic | 40.0% |
| ! | GAAGCAACTATTTCTTCCTC+AGG | + | chr1_4:60656411-60656430 | None:intergenic | 40.0% |
| TGCAGCATCATTTCAGATAC+TGG | + | chr1_4:60656598-60656617 | None:intergenic | 40.0% | |
| GTAGTAGGGAAATTCATGAC+TGG | + | chr1_4:60656778-60656797 | None:intergenic | 40.0% | |
| ! | CATGTCAAGTTTTGCGTAGT+AGG | + | chr1_4:60656793-60656812 | None:intergenic | 40.0% |
| TGACAGCTGTGTCAATTCAA+TGG | - | chr1_4:60656820-60656839 | Msa0174880:CDS | 40.0% | |
| AATTTATAACGGCATCCAGG+TGG | + | chr1_4:60657557-60657576 | None:intergenic | 40.0% | |
| ! | GCACACAATATGTTTTCCCT+TGG | + | chr1_4:60657699-60657718 | None:intergenic | 40.0% |
| AGTCAATAGACTTTCCAGCT+TGG | + | chr1_4:60657799-60657818 | None:intergenic | 40.0% | |
| !! | TCTATTGACTTACACGGCTT+TGG | - | chr1_4:60657809-60657828 | Msa0174880:CDS | 40.0% |
| !! | TAAACCCTTGGTTCTAAGCT+TGG | - | chr1_4:60658187-60658206 | Msa0174880:intron | 40.0% |
| AGATCCAAGCTTAGAACCAA+GGG | + | chr1_4:60658194-60658213 | None:intergenic | 40.0% | |
| TAGATCCAAGCTTAGAACCA+AGG | + | chr1_4:60658195-60658214 | None:intergenic | 40.0% | |
| TCAGGTCCTTAACATCTGTT+GGG | + | chr1_4:60658398-60658417 | None:intergenic | 40.0% | |
| ATCAGGTCCTTAACATCTGT+TGG | + | chr1_4:60658399-60658418 | None:intergenic | 40.0% | |
| ! | TCAACTCTATCTGATGGTGA+TGG | - | chr1_4:60658420-60658439 | Msa0174880:CDS | 40.0% |
| ! | AATTGATGATCGACATGCTC+GGG | + | chr1_4:60658532-60658551 | None:intergenic | 40.0% |
| TGCACACCTTTACAAGTATC+TGG | - | chr1_4:60658643-60658662 | Msa0174880:CDS | 40.0% | |
| GAGGTCAGAATTAACAATGC+AGG | - | chr1_4:60658832-60658851 | Msa0174880:CDS | 40.0% | |
| TTCGACGAGTTCTTTAACGG+CGG | + | chr1_4:60652415-60652434 | None:intergenic | 45.0% | |
| GTCGAAAATAGCTTAGACGC+CGG | - | chr1_4:60652429-60652448 | Msa0174880:three_prime_UTR | 45.0% | |
| AAGAGAGATTTCGATGCTGG+TGG | + | chr1_4:60652457-60652476 | None:intergenic | 45.0% | |
| TGAAATGCCGCAACCGTTAT+CGG | + | chr1_4:60652511-60652530 | None:intergenic | 45.0% | |
| AACGTCAAATGCGTTGCAAC+CGG | + | chr1_4:60652768-60652787 | None:intergenic | 45.0% | |
| CTTTCTGTTGGGTACTCTTC+AGG | - | chr1_4:60653447-60653466 | Msa0174880:intron | 45.0% | |
| TCTGAGAGCTGCAAAGTTGA+TGG | - | chr1_4:60653640-60653659 | Msa0174880:intron | 45.0% | |
| ! | GATGGTTTTCTTTCCAAGCC+TGG | - | chr1_4:60653658-60653677 | Msa0174880:intron | 45.0% |
| ! | TTTTCTTTCCAAGCCTGGAC+TGG | - | chr1_4:60653663-60653682 | Msa0174880:intron | 45.0% |
| TTTCTTTCCAAGCCTGGACT+GGG | - | chr1_4:60653664-60653683 | Msa0174880:intron | 45.0% | |
| !! | ACTGGGTAACGGAAGGAATT+TGG | - | chr1_4:60653681-60653700 | Msa0174880:intron | 45.0% |
| !! | CTGGGTAACGGAAGGAATTT+GGG | - | chr1_4:60653682-60653701 | Msa0174880:intron | 45.0% |
| !!! | CCGATTTTTGGCATATCCAC+TGG | + | chr1_4:60653739-60653758 | None:intergenic | 45.0% |
| ! | CTCTCTAAGGGCTTGCAATA+AGG | + | chr1_4:60653902-60653921 | None:intergenic | 45.0% |
| CTTATTGCAAGCCCTTAGAG+AGG | - | chr1_4:60653900-60653919 | Msa0174880:intron | 45.0% | |
| ! | AAACAGTCTTCTTTTGCGGC+AGG | + | chr1_4:60653985-60654004 | None:intergenic | 45.0% |
| GTCTCCTATCGTAACGAAAC+CGG | - | chr1_4:60654029-60654048 | Msa0174880:intron | 45.0% | |
| TCTCAAGGACAGTTGTGAGT+GGG | - | chr1_4:60654382-60654401 | Msa0174880:intron | 45.0% | |
| AAGGACAGGCACTTCAGATA+AGG | + | chr1_4:60654511-60654530 | None:intergenic | 45.0% | |
| ! | GGAGCTTGATTTCTAAGGAC+AGG | + | chr1_4:60654525-60654544 | None:intergenic | 45.0% |
| TTGCAGCAACGTAATCCTGA+TGG | - | chr1_4:60654639-60654658 | Msa0174880:intron | 45.0% | |
| GAGAACCTAACATGGTACGT+TGG | - | chr1_4:60654715-60654734 | Msa0174880:intron | 45.0% | |
| GCAAACCAACGTACCATGTT+AGG | + | chr1_4:60654723-60654742 | None:intergenic | 45.0% | |
| CAGTCAAGGATTCCGAAGAT+TGG | - | chr1_4:60654742-60654761 | Msa0174880:intron | 45.0% | |
| !! | TAGTAACGGGTTAGCCACTA+AGG | + | chr1_4:60654925-60654944 | None:intergenic | 45.0% |
| CAGGCGATGAACAAATTGGA+GGG | + | chr1_4:60655152-60655171 | None:intergenic | 45.0% | |
| TTGGGAGAATCTAATCGTGC+AGG | + | chr1_4:60655171-60655190 | None:intergenic | 45.0% | |
| TTAGATTCTCCCAAGTCCTC+TGG | - | chr1_4:60655177-60655196 | Msa0174880:intron | 45.0% | |
| ATCTTCTGACCAGAGGACTT+GGG | + | chr1_4:60655189-60655208 | None:intergenic | 45.0% | |
| TATCTTCTGACCAGAGGACT+TGG | + | chr1_4:60655190-60655209 | None:intergenic | 45.0% | |
| GGAGAATATCTTCTGACCAG+AGG | + | chr1_4:60655196-60655215 | None:intergenic | 45.0% | |
| GAACAATCTTTCCAGTTCGG+TGG | + | chr1_4:60655471-60655490 | None:intergenic | 45.0% | |
| TGAACCAACAACCTCTGCTT+AGG | - | chr1_4:60656095-60656114 | Msa0174880:CDS | 45.0% | |
| CAGAAGTTCAGAGGGGAAAA+AGG | + | chr1_4:60656160-60656179 | None:intergenic | 45.0% | |
| ! | CTTTTTCCCCTCTGAACTTC+TGG | - | chr1_4:60656158-60656177 | Msa0174880:CDS | 45.0% |
| ACAGTTCCCAGAAGTTCAGA+GGG | + | chr1_4:60656168-60656187 | None:intergenic | 45.0% | |
| AAGATTGGAGTTATCCCCTG+AGG | - | chr1_4:60656392-60656411 | Msa0174880:intron | 45.0% | |
| !! | TTTCTAAGGCTGATCATCCG+TGG | + | chr1_4:60656684-60656703 | None:intergenic | 45.0% |
| GTTGACAAAGCTTGAGCGAT+AGG | - | chr1_4:60657145-60657164 | Msa0174880:CDS | 45.0% | |
| ! | AACACCATGTTTGGAGTCGA+AGG | - | chr1_4:60657599-60657618 | Msa0174880:CDS | 45.0% |
| TCTACCTTCGACTCCAAACA+TGG | + | chr1_4:60657606-60657625 | None:intergenic | 45.0% | |
| ! | GGAAGTCTAGCTGACTTACA+CGG | - | chr1_4:60657967-60657986 | Msa0174880:intron | 45.0% |
| !! | CTATCTGATGGTGATGGTCA+TGG | - | chr1_4:60658426-60658445 | Msa0174880:CDS | 45.0% |
| ACATTGCACGAACTCTTGGA+GGG | + | chr1_4:60658503-60658522 | None:intergenic | 45.0% | |
| AACATTGCACGAACTCTTGG+AGG | + | chr1_4:60658504-60658523 | None:intergenic | 45.0% | |
| TCCAAGAGTTCGTGCAATGT+TGG | - | chr1_4:60658503-60658522 | Msa0174880:CDS | 45.0% | |
| TCACCATGGAATTGTCCTCA+TGG | - | chr1_4:60658764-60658783 | Msa0174880:intron | 45.0% | |
| TCAACTAAATGCCGCATGGT+TGG | + | chr1_4:60658794-60658813 | None:intergenic | 45.0% | |
| CAAGTCAACTAAATGCCGCA+TGG | + | chr1_4:60658798-60658817 | None:intergenic | 45.0% | |
| !!! | CATATTTTTTTTTATTAAAT+TGG | - | chr1_4:60655533-60655552 | Msa0174880:intron | 5.0% |
| ! | CAAGTCACCGATAACGGTTG+CGG | - | chr1_4:60652501-60652520 | Msa0174880:CDS | 50.0% |
| TCATTCCGGTGTTCTTGTGG+CGG | - | chr1_4:60652791-60652810 | Msa0174880:CDS | 50.0% | |
| ! | CTTTTCCGCCACAAGAACAC+CGG | + | chr1_4:60652799-60652818 | None:intergenic | 50.0% |
| TTTGGCTGCACGAACACAAC+TGG | - | chr1_4:60653499-60653518 | Msa0174880:intron | 50.0% | |
| !! | GATGCCGGTTTCGTTACGAT+AGG | + | chr1_4:60654036-60654055 | None:intergenic | 50.0% |
| CTGAGGAATCGCCACATTCA+GGG | + | chr1_4:60654058-60654077 | None:intergenic | 50.0% | |
| !! | GAAGGGTTGATTCGTGAGAG+TGG | - | chr1_4:60654243-60654262 | Msa0174880:intron | 50.0% |
| !! | GGTTGATTCGTGAGAGTGGT+GGG | - | chr1_4:60654247-60654266 | Msa0174880:intron | 50.0% |
| !! | GTTGATTCGTGAGAGTGGTG+GGG | - | chr1_4:60654248-60654267 | Msa0174880:intron | 50.0% |
| ! | TTGATTCGTGAGAGTGGTGG+GGG | - | chr1_4:60654249-60654268 | Msa0174880:intron | 50.0% |
| ! | TGAGAGTGGTGGGGGTTTAA+TGG | - | chr1_4:60654257-60654276 | Msa0174880:intron | 50.0% |
| ! | GAGAGTGGTGGGGGTTTAAT+GGG | - | chr1_4:60654258-60654277 | Msa0174880:intron | 50.0% |
| TTTGCGCAATCAAGCTACCC+TGG | - | chr1_4:60654359-60654378 | Msa0174880:intron | 50.0% | |
| ATCAAGCTACCCTGGTCTCA+AGG | - | chr1_4:60654367-60654386 | Msa0174880:intron | 50.0% | |
| CACAACTGTCCTTGAGACCA+GGG | + | chr1_4:60654379-60654398 | None:intergenic | 50.0% | |
| TCACAACTGTCCTTGAGACC+AGG | + | chr1_4:60654380-60654399 | None:intergenic | 50.0% | |
| GTCTCAAGGACAGTTGTGAG+TGG | - | chr1_4:60654381-60654400 | Msa0174880:intron | 50.0% | |
| CTCAAGGACAGTTGTGAGTG+GGG | - | chr1_4:60654383-60654402 | Msa0174880:intron | 50.0% | |
| TCAAGGACAGTTGTGAGTGG+GGG | - | chr1_4:60654384-60654403 | Msa0174880:intron | 50.0% | |
| !! | GGTACGTTGGTTTGCAGTCA+AGG | - | chr1_4:60654728-60654747 | Msa0174880:intron | 50.0% |
| GCAGGCGATGAACAAATTGG+AGG | + | chr1_4:60655153-60655172 | None:intergenic | 50.0% | |
| CGTGCAGGCGATGAACAAAT+TGG | + | chr1_4:60655156-60655175 | None:intergenic | 50.0% | |
| TCACTATACGGCTGCAACTC+TGG | - | chr1_4:60655391-60655410 | Msa0174880:intron | 50.0% | |
| CTCACCTAAGCAGAGGTTGT+TGG | + | chr1_4:60656102-60656121 | None:intergenic | 50.0% | |
| CAGTTCCCAGAAGTTCAGAG+GGG | + | chr1_4:60656167-60656186 | None:intergenic | 50.0% | |
| GACAGTTCCCAGAAGTTCAG+AGG | + | chr1_4:60656169-60656188 | None:intergenic | 50.0% | |
| ! | TAGTGAGTTGCCACTTGCCA+CGG | - | chr1_4:60656664-60656683 | Msa0174880:CDS | 50.0% |
| GAGGATCTAAATGCACCACC+TGG | - | chr1_4:60657539-60657558 | Msa0174880:CDS | 50.0% | |
| GAAGATGATTCAGGCCAAGC+TGG | - | chr1_4:60657782-60657801 | Msa0174880:CDS | 50.0% | |
| ! | CTAGCTGACTTACACGGCTT+TGG | - | chr1_4:60657973-60657992 | Msa0174880:intron | 50.0% |
| GCCAACATTGCACGAACTCT+TGG | + | chr1_4:60658507-60658526 | None:intergenic | 50.0% | |
| TGGCAGAGCTGAAATCACCA+TGG | - | chr1_4:60658750-60658769 | Msa0174880:intron | 50.0% | |
| CTGCCATGAGGACAATTCCA+TGG | + | chr1_4:60658770-60658789 | None:intergenic | 50.0% | |
| CATGGAATTGTCCTCATGGC+AGG | - | chr1_4:60658768-60658787 | Msa0174880:intron | 50.0% | |
| GAGGTCGAGGATGACTTGAC+CGG | + | chr1_4:60652388-60652407 | None:intergenic | 55.0% | |
| GTTCTTTAACGGCGGAGGAG+AGG | + | chr1_4:60652407-60652426 | None:intergenic | 55.0% | |
| GACGAGTTCTTTAACGGCGG+AGG | + | chr1_4:60652412-60652431 | None:intergenic | 55.0% | |
| ! | TCCAAGCCTGGACTGGGTAA+CGG | - | chr1_4:60653670-60653689 | Msa0174880:intron | 55.0% |
| TTCCTTCCGTTACCCAGTCC+AGG | + | chr1_4:60653679-60653698 | None:intergenic | 55.0% | |
| GAAACCGGCATCCCTGAATG+TGG | - | chr1_4:60654044-60654063 | Msa0174880:intron | 55.0% | |
| ATCGCCACATTCAGGGATGC+CGG | + | chr1_4:60654051-60654070 | None:intergenic | 55.0% | |
| CCTGAGGAATCGCCACATTC+AGG | + | chr1_4:60654059-60654078 | None:intergenic | 55.0% | |
| CCTGAATGTGGCGATTCCTC+AGG | - | chr1_4:60654056-60654075 | Msa0174880:intron | 55.0% | |
| !! | GGGTTGATTCGTGAGAGTGG+TGG | - | chr1_4:60654246-60654265 | Msa0174880:intron | 55.0% |
| ! | TGGTGGGGGTTTAATGGGCA+AGG | - | chr1_4:60654263-60654282 | Msa0174880:intron | 55.0% |
| ! | CTGCTGTGGTTGATGCCATC+AGG | + | chr1_4:60654657-60654676 | None:intergenic | 55.0% |
| TTCGGAAGATGGTTCAGGCC+AGG | - | chr1_4:60657942-60657961 | Msa0174880:intron | 55.0% | |
| AGTCAGCTAGACTTCCAGCC+TGG | + | chr1_4:60657963-60657982 | None:intergenic | 55.0% | |
| TGGAGGGCAGACTGAATCTG+AGG | + | chr1_4:60658487-60658506 | None:intergenic | 55.0% | |
| ! | GATTTCGATGCTGGTGGCGC+CGG | + | chr1_4:60652451-60652470 | None:intergenic | 60.0% |
| TCCGTTACCCAGTCCAGGCT+TGG | + | chr1_4:60653674-60653693 | None:intergenic | 60.0% | |
| !! | AGCCTGGACTGGGTAACGGA+AGG | - | chr1_4:60653674-60653693 | Msa0174880:intron | 60.0% |
| GGCTGATCATCCGTGGCAAG+TGG | + | chr1_4:60656677-60656696 | None:intergenic | 60.0% | |
| GAAGATGGTTCAGGCCAGGC+TGG | - | chr1_4:60657946-60657965 | Msa0174880:intron | 60.0% | |
| CTCATGGCAGGCCAACCATG+CGG | - | chr1_4:60658780-60658799 | Msa0174880:intron | 60.0% | |
| TAACGGCGGAGGAGAGGTCG+AGG | + | chr1_4:60652401-60652420 | None:intergenic | 65.0% | |
| !! | CGCATGGTTGGCCTGCCATG+AGG | + | chr1_4:60658782-60658801 | None:intergenic | 65.0% |
| GGCAGCAGCAGCCACCGAAC+TGG | - | chr1_4:60655457-60655476 | Msa0174880:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 60652315 | 60659024 | 60652315 | ID=Msa0174880;Name=Msa0174880 |
| chr1_4 | mRNA | 60652315 | 60659024 | 60652315 | ID=Msa0174880-mRNA-1;Parent=Msa0174880;Name=Msa0174880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=9|0.9|0.90|1|1|1|11|165|941 |
| chr1_4 | exon | 60652315 | 60652602 | 60652315 | ID=Msa0174880-mRNA-1:exon:19240;Parent=Msa0174880-mRNA-1 |
| chr1_4 | exon | 60652749 | 60652936 | 60652749 | ID=Msa0174880-mRNA-1:exon:19239;Parent=Msa0174880-mRNA-1 |
| chr1_4 | exon | 60653719 | 60653822 | 60653719 | ID=Msa0174880-mRNA-1:exon:19238;Parent=Msa0174880-mRNA-1 |
| chr1_4 | exon | 60654888 | 60654953 | 60654888 | ID=Msa0174880-mRNA-1:exon:19237;Parent=Msa0174880-mRNA-1 |
| chr1_4 | exon | 60655223 | 60655296 | 60655223 | ID=Msa0174880-mRNA-1:exon:19236;Parent=Msa0174880-mRNA-1 |
| chr1_4 | exon | 60655449 | 60655517 | 60655449 | ID=Msa0174880-mRNA-1:exon:19235;Parent=Msa0174880-mRNA-1 |
| chr1_4 | exon | 60655822 | 60655948 | 60655822 | ID=Msa0174880-mRNA-1:exon:19234;Parent=Msa0174880-mRNA-1 |
| chr1_4 | exon | 60656023 | 60656291 | 60656023 | ID=Msa0174880-mRNA-1:exon:19233;Parent=Msa0174880-mRNA-1 |
| chr1_4 | exon | 60656611 | 60657870 | 60656611 | ID=Msa0174880-mRNA-1:exon:19232;Parent=Msa0174880-mRNA-1 |
| chr1_4 | exon | 60658395 | 60658718 | 60658395 | ID=Msa0174880-mRNA-1:exon:19231;Parent=Msa0174880-mRNA-1 |
| chr1_4 | exon | 60658794 | 60659024 | 60658794 | ID=Msa0174880-mRNA-1:exon:19230;Parent=Msa0174880-mRNA-1 |
| chr1_4 | five_prime_UTR | 60659016 | 60659024 | 60659016 | ID=Msa0174880-mRNA-1:five_prime_utr;Parent=Msa0174880-mRNA-1 |
| chr1_4 | CDS | 60658794 | 60659015 | 60658794 | ID=Msa0174880-mRNA-1:cds;Parent=Msa0174880-mRNA-1 |
| chr1_4 | CDS | 60658395 | 60658718 | 60658395 | ID=Msa0174880-mRNA-1:cds;Parent=Msa0174880-mRNA-1 |
| chr1_4 | CDS | 60656611 | 60657870 | 60656611 | ID=Msa0174880-mRNA-1:cds;Parent=Msa0174880-mRNA-1 |
| chr1_4 | CDS | 60656023 | 60656291 | 60656023 | ID=Msa0174880-mRNA-1:cds;Parent=Msa0174880-mRNA-1 |
| chr1_4 | CDS | 60655822 | 60655948 | 60655822 | ID=Msa0174880-mRNA-1:cds;Parent=Msa0174880-mRNA-1 |
| chr1_4 | CDS | 60655449 | 60655517 | 60655449 | ID=Msa0174880-mRNA-1:cds;Parent=Msa0174880-mRNA-1 |
| chr1_4 | CDS | 60655223 | 60655296 | 60655223 | ID=Msa0174880-mRNA-1:cds;Parent=Msa0174880-mRNA-1 |
| chr1_4 | CDS | 60654888 | 60654953 | 60654888 | ID=Msa0174880-mRNA-1:cds;Parent=Msa0174880-mRNA-1 |
| chr1_4 | CDS | 60653719 | 60653822 | 60653719 | ID=Msa0174880-mRNA-1:cds;Parent=Msa0174880-mRNA-1 |
| chr1_4 | CDS | 60652749 | 60652936 | 60652749 | ID=Msa0174880-mRNA-1:cds;Parent=Msa0174880-mRNA-1 |
| chr1_4 | CDS | 60652480 | 60652602 | 60652480 | ID=Msa0174880-mRNA-1:cds;Parent=Msa0174880-mRNA-1 |
| chr1_4 | three_prime_UTR | 60652315 | 60652479 | 60652315 | ID=Msa0174880-mRNA-1:three_prime_utr;Parent=Msa0174880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
