Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370720 | XP_003591551.2 | 96.406 | 946 | 16 | 2 | 1 | 941 | 1 | 933 | 0.0 | 1869 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370720 | sp|Q941I6|PMS1_ARATH | 56.503 | 938 | 333 | 12 | 7 | 926 | 16 | 896 | 0.0 | 993 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370720 | A0A396JUA8 | 96.406 | 946 | 16 | 2 | 1 | 941 | 1 | 933 | 0.0 | 1869 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012080 | Msa1370720 | 0.804661 | 1.941046e-49 | -8.615850e-47 |
| Msa0032090 | Msa1370720 | 0.804821 | 1.796885e-49 | -8.615850e-47 |
| Msa0032430 | Msa1370720 | 0.812539 | 4.029079e-51 | -8.615850e-47 |
| Msa0054480 | Msa1370720 | 0.829704 | 4.436163e-55 | -8.615850e-47 |
| Msa0061290 | Msa1370720 | 0.834215 | 3.409743e-56 | -8.615850e-47 |
| Msa0070700 | Msa1370720 | 0.833618 | 4.810116e-56 | -8.615850e-47 |
| Msa0079380 | Msa1370720 | 0.819477 | 1.137814e-52 | -8.615850e-47 |
| Msa0115080 | Msa1370720 | 0.819014 | 1.450315e-52 | -8.615850e-47 |
| Msa0118590 | Msa1370720 | 0.824858 | 6.427866e-54 | -8.615850e-47 |
| Msa1370720 | Msa1376770 | 0.819129 | 1.365415e-52 | -8.615850e-47 |
| Msa1370720 | Msa1442210 | 0.800152 | 1.647943e-48 | -8.615850e-47 |
| Msa1370720 | Msa1443760 | 0.955580 | 2.186992e-113 | -8.615850e-47 |
| Msa0625720 | Msa1370720 | 0.832339 | 1.000464e-55 | -8.615850e-47 |
| Msa0661650 | Msa1370720 | 0.807721 | 4.402660e-50 | -8.615850e-47 |
| Msa0663390 | Msa1370720 | 0.806191 | 9.272182e-50 | -8.615850e-47 |
| Msa0715700 | Msa1370720 | 0.808994 | 2.356150e-50 | -8.615850e-47 |
| Msa0789980 | Msa1370720 | 0.946542 | 3.786559e-105 | -8.615850e-47 |
| Msa0129080 | Msa1370720 | 0.923495 | 2.464398e-89 | -8.615850e-47 |
| Msa0144370 | Msa1370720 | 0.828599 | 8.220688e-55 | -8.615850e-47 |
| Msa0152350 | Msa1370720 | 0.820987 | 5.130086e-53 | -8.615850e-47 |
| Msa0172070 | Msa1370720 | 0.809991 | 1.438906e-50 | -8.615850e-47 |
| Msa0174880 | Msa1370720 | 0.950336 | 2.033347e-108 | -8.615850e-47 |
| Msa0187120 | Msa1370720 | 0.808466 | 3.054149e-50 | -8.615850e-47 |
| Msa0189010 | Msa1370720 | 0.808121 | 3.618199e-50 | -8.615850e-47 |
| Msa1228200 | Msa1370720 | 0.810471 | 1.134133e-50 | -8.615850e-47 |
| Msa1277150 | Msa1370720 | 0.800011 | 1.760516e-48 | -8.615850e-47 |
| Msa1298820 | Msa1370720 | 0.820330 | 7.261885e-53 | -8.615850e-47 |
| Msa1300970 | Msa1370720 | 0.809145 | 2.186962e-50 | -8.615850e-47 |
| Msa1302830 | Msa1370720 | 0.810628 | 1.048469e-50 | -8.615850e-47 |
| Msa1320670 | Msa1370720 | 0.803149 | 4.001382e-49 | -8.615850e-47 |
| Msa1332000 | Msa1370720 | 0.807884 | 4.064079e-50 | -8.615850e-47 |
| Msa1332070 | Msa1370720 | 0.834054 | 3.741258e-56 | -8.615850e-47 |
| Msa0378720 | Msa1370720 | 0.806634 | 7.478613e-50 | -8.615850e-47 |
| Msa0465410 | Msa1370720 | 0.834968 | 2.204506e-56 | -8.615850e-47 |
| Msa0261340 | Msa1370720 | 0.823520 | 1.325343e-53 | -8.615850e-47 |
| Msa0337700 | Msa1370720 | 0.800264 | 1.563372e-48 | -8.615850e-47 |
| Msa0358890 | Msa1370720 | 0.805569 | 1.252861e-49 | -8.615850e-47 |
| Msa1171710 | Msa1370720 | 0.837398 | 5.322060e-57 | -8.615850e-47 |
| Msa1215050 | Msa1370720 | 0.812248 | 4.664088e-51 | -8.615850e-47 |
| Msa0511270 | Msa1370720 | 0.832468 | 9.291068e-56 | -8.615850e-47 |
| Msa0529890 | Msa1370720 | 0.829922 | 3.925919e-55 | -8.615850e-47 |
| Msa0569200 | Msa1370720 | 0.808697 | 2.726724e-50 | -8.615850e-47 |
| Msa0585560 | Msa1370720 | 0.823552 | 1.302463e-53 | -8.615850e-47 |
| Msa0861600 | Msa1370720 | 0.800426 | 1.449023e-48 | -8.615850e-47 |
| Msa0902510 | Msa1370720 | 0.801896 | 7.252516e-49 | -8.615850e-47 |
| Msa0941190 | Msa1370720 | 0.802630 | 5.120200e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370720 | MtrunA17_Chr1g0195721 | 96.406 | 946 | 16 | 2 | 1 | 941 | 1 | 933 | 0.0 | 1869 |
| Msa1370720 | MtrunA17_Chr3g0077711 | 32.492 | 317 | 202 | 8 | 8 | 319 | 7 | 316 | 2.77e-36 | 147 |
| Msa1370720 | MtrunA17_Chr5g0407101 | 24.528 | 371 | 245 | 9 | 8 | 350 | 4 | 367 | 8.02e-24 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370720 | AT4G02460.1 | 56.503 | 938 | 333 | 12 | 7 | 926 | 16 | 896 | 0.0 | 993 |
| Msa1370720 | AT4G02460.4 | 54.556 | 845 | 309 | 13 | 100 | 926 | 11 | 798 | 0.0 | 839 |
| Msa1370720 | AT4G02460.2 | 54.534 | 816 | 298 | 12 | 7 | 804 | 16 | 776 | 0.0 | 798 |
| Msa1370720 | AT4G02460.3 | 51.729 | 723 | 276 | 12 | 100 | 804 | 11 | 678 | 0.0 | 643 |
| Msa1370720 | AT4G09140.1 | 32.722 | 327 | 202 | 9 | 1 | 319 | 22 | 338 | 1.11e-37 | 152 |
| Msa1370720 | AT4G35520.3 | 27.249 | 378 | 230 | 10 | 6 | 358 | 2 | 359 | 1.11e-27 | 121 |
| Msa1370720 | AT4G35520.3 | 28.054 | 221 | 120 | 7 | 734 | 934 | 920 | 1121 | 7.84e-11 | 67.0 |
| Msa1370720 | AT4G35520.2 | 28.161 | 348 | 211 | 9 | 6 | 328 | 2 | 335 | 1.42e-27 | 121 |
| Msa1370720 | AT4G35520.2 | 28.054 | 221 | 120 | 7 | 734 | 934 | 947 | 1148 | 8.52e-11 | 66.6 |
| Msa1370720 | AT4G35520.6 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 4.00e-23 | 106 |
| Msa1370720 | AT4G35520.6 | 28.054 | 221 | 120 | 7 | 734 | 934 | 910 | 1111 | 8.44e-11 | 66.6 |
| Msa1370720 | AT4G35520.4 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 4.23e-23 | 106 |
| Msa1370720 | AT4G35520.1 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 5.58e-23 | 106 |
| Msa1370720 | AT4G35520.1 | 28.054 | 221 | 120 | 7 | 734 | 934 | 922 | 1123 | 9.53e-11 | 66.6 |
| Msa1370720 | AT4G35520.5 | 27.134 | 328 | 203 | 8 | 6 | 328 | 2 | 298 | 6.19e-23 | 106 |
| Msa1370720 | AT4G35520.5 | 27.586 | 232 | 121 | 7 | 734 | 934 | 910 | 1125 | 5.78e-11 | 67.4 |
| Msa1370720 | AT4G35520.7 | 27.586 | 232 | 121 | 7 | 734 | 934 | 710 | 925 | 7.10e-11 | 67.0 |
Find 195 sgRNAs with CRISPR-Local
Find 407 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATTTATCATTGGTAAAT+TGG | 0.152350 | tig0019143:+54249 | Msa1370720:CDS |
| CTTCAGTCTCTGACTACTTT+TGG | 0.163663 | tig0019143:+51076 | Msa1370720:CDS |
| ACTGGGTAACGGAAGGAATT+TGG | 0.197107 | tig0019143:+52088 | Msa1370720:CDS |
| TTGAGTTCTCTTTGTGCTTT+GGG | 0.201918 | tig0019143:+51115 | Msa1370720:CDS |
| TTGAAATGATTTCAGGTTCT+TGG | 0.223911 | tig0019143:+51013 | Msa1370720:intron |
| GCTTAGAAGTTTCATTAATT+TGG | 0.226550 | tig0019143:-53006 | None:intergenic |
| TTAAACTCTTTGCTTCTTAC+AGG | 0.234975 | tig0019143:-51283 | None:intergenic |
| CAGAGCGCACAAAACTTTAA+AGG | 0.246050 | tig0019143:+52703 | Msa1370720:CDS |
| AAGAAAATTGCGCGACAAAT+TGG | 0.251802 | tig0019143:+51223 | Msa1370720:CDS |
| GGGGATAACTCCAATCTTAT+TGG | 0.270951 | tig0019143:-54794 | None:intergenic |
| TTGTCTATAACTACCAATTA+TGG | 0.281795 | tig0019143:-56864 | None:intergenic |
| TCTTCTCTTTCCTACTCTTA+AGG | 0.288994 | tig0019143:-53646 | None:intergenic |
| CCTGAGGAATCGCCACATTC+AGG | 0.292943 | tig0019143:-52463 | None:intergenic |
| CATGGAGAATGTTCCATAAT+TGG | 0.303790 | tig0019143:+56851 | Msa1370720:CDS |
| GTTGAGTTCTCTTTGTGCTT+TGG | 0.311062 | tig0019143:+51114 | Msa1370720:CDS |
| CAGAGGTTGTTGGTTCAATA+TGG | 0.311266 | tig0019143:-54496 | None:intergenic |
| AATGCAGGAGTAATTAATTA+TGG | 0.318351 | tig0019143:+57254 | Msa1370720:exon |
| CGGAATATACGTAAGGAATA+TGG | 0.320588 | tig0019143:+51307 | Msa1370720:CDS |
| GAAAGAGAAGAGACTTTCTT+TGG | 0.322390 | tig0019143:+53658 | Msa1370720:CDS |
| CTCTCTAAGGGCTTGCAATA+AGG | 0.337830 | tig0019143:-52306 | None:intergenic |
| TACAGCAACAAAATTGTTAA+GGG | 0.349954 | tig0019143:-52861 | None:intergenic |
| TCTGAGAGCTGCAAAGTTGA+TGG | 0.350885 | tig0019143:+52047 | Msa1370720:CDS |
| TCTTTCTGCTGTTCAATGTC+TGG | 0.350891 | tig0019143:-53832 | None:intergenic |
| CTGGGTAACGGAAGGAATTT+GGG | 0.351699 | tig0019143:+52089 | Msa1370720:CDS |
| GTTTCAGATACTTGAGCATT+TGG | 0.356986 | tig0019143:+57137 | Msa1370720:intron |
| TTCAATCTTGGATTTATCAT+TGG | 0.358205 | tig0019143:+54241 | Msa1370720:CDS |
| TTACAGCAACAAAATTGTTA+AGG | 0.359742 | tig0019143:-52862 | None:intergenic |
| CATTTGACGTTTAATCATTC+CGG | 0.364164 | tig0019143:+51184 | Msa1370720:CDS |
| GTGATTGGACAATTCAATCT+TGG | 0.365478 | tig0019143:+54229 | Msa1370720:CDS |
| CGTGCAGGCGATGAACAAAT+TGG | 0.368469 | tig0019143:-53560 | None:intergenic |
| AGATTTATTCATTGTGGATC+AGG | 0.374375 | tig0019143:+54276 | Msa1370720:CDS |
| TATATCCATTTCAGGAAGAA+TGG | 0.378291 | tig0019143:+55910 | Msa1370720:intron |
| AACAAGATCATATCTTCATT+TGG | 0.379755 | tig0019143:+52982 | Msa1370720:CDS |
| CAATTCACATGGACATAATC+AGG | 0.380435 | tig0019143:+54837 | Msa1370720:CDS |
| ATAGCAAAAGGCGTTCGATT+TGG | 0.383212 | tig0019143:+51888 | Msa1370720:CDS |
| TCACTATACGGCTGCAACTC+TGG | 0.383524 | tig0019143:+53798 | Msa1370720:CDS |
| TTTATCAGATTGTTGCTAGA+TGG | 0.385028 | tig0019143:-53506 | None:intergenic |
| ACAGCATAAGAGGCATTATC+AGG | 0.385292 | tig0019143:-52350 | None:intergenic |
| GTTGGTTCAATATGGTTGAT+TGG | 0.388187 | tig0019143:-54488 | None:intergenic |
| AACGTCAAATGCGTTGCAAC+CGG | 0.389282 | tig0019143:-51172 | None:intergenic |
| GCAAACCAACGTACCATGTT+AGG | 0.389360 | tig0019143:-53127 | None:intergenic |
| CTTGAACAATCTTTCCAGTT+CGG | 0.390899 | tig0019143:-53878 | None:intergenic |
| TGATCTTGTTATCAGGTCAT+TGG | 0.393473 | tig0019143:-52969 | None:intergenic |
| AAATACTACAGAGCATGTTT+TGG | 0.394023 | tig0019143:+53526 | Msa1370720:CDS |
| TTTGTTGTAAGCCCTCTCTA+AGG | 0.396357 | tig0019143:-52319 | None:intergenic |
| TATCTTCTGACCAGAGGACT+TGG | 0.403945 | tig0019143:-53594 | None:intergenic |
| TGAAATGCCGCAACCGTTAT+CGG | 0.405670 | tig0019143:-50915 | None:intergenic |
| CTTGTGGAGCTTGATTTCTA+AGG | 0.406330 | tig0019143:-52934 | None:intergenic |
| CATGAACACTTTCAACTGCT+TGG | 0.406413 | tig0019143:+52004 | Msa1370720:CDS |
| GTCTCCTATCGTAACGAAAC+CGG | 0.407956 | tig0019143:+52436 | Msa1370720:CDS |
| GCCAACATTGCACGAACTCT+TGG | 0.408478 | tig0019143:-56911 | None:intergenic |
| GGTTGATTCGTGAGAGTGGT+GGG | 0.409407 | tig0019143:+52654 | Msa1370720:CDS |
| CAATCCAGCAAATACAGATA+TGG | 0.412593 | tig0019143:+53683 | Msa1370720:CDS |
| GACCATTAGCGCAGTACATC+AGG | 0.412609 | tig0019143:-57420 | None:intergenic |
| TAGAATACCTTGAAGCTGTT+TGG | 0.415285 | tig0019143:-50938 | None:intergenic |
| GAAGATATGATCTTGTTATC+AGG | 0.417275 | tig0019143:-52976 | None:intergenic |
| TTTCTTTCCAAGCCTGGACT+GGG | 0.421406 | tig0019143:+52071 | Msa1370720:CDS |
| GAAGCAACTATTTCTTCCTC+AGG | 0.429926 | tig0019143:-54815 | None:intergenic |
| TTTGGCTGCACGAACACAAC+TGG | 0.430222 | tig0019143:+51906 | Msa1370720:CDS |
| CAGGAAGAATGGATTTACTT+TGG | 0.430284 | tig0019143:+55921 | Msa1370720:intron |
| CATATGTAGGCCAATAAGAT+TGG | 0.432843 | tig0019143:+54784 | Msa1370720:intron |
| TCAATACTGCTAGTATTTCT+CGG | 0.433938 | tig0019143:+52504 | Msa1370720:CDS |
| TTCAGAAGCATTATTAGAAT+CGG | 0.437195 | tig0019143:-52594 | None:intergenic |
| AAATTCATTGACAGCATAAG+AGG | 0.438687 | tig0019143:-52360 | None:intergenic |
| TTGGTTCAATATGGTTGATT+GGG | 0.438724 | tig0019143:-54487 | None:intergenic |
| TCAATGTAACTCCTGATAAG+AGG | 0.441411 | tig0019143:+52258 | Msa1370720:CDS |
| ACAGCAGAAAGAAAGGGTTT+TGG | 0.441429 | tig0019143:+53843 | Msa1370720:CDS |
| CTATTCTCACATGTTGAAGA+AGG | 0.444593 | tig0019143:+52632 | Msa1370720:CDS |
| TCCGTTACCCAGTCCAGGCT+TGG | 0.447116 | tig0019143:-52078 | None:intergenic |
| GGCAGCAGCAGCCACCGAAC+TGG | 0.447748 | tig0019143:+53864 | Msa1370720:CDS |
| TACAGATATGGAAAAGCTAA+TGG | 0.451831 | tig0019143:+53695 | Msa1370720:CDS |
| GGACAGACTTTAATTTATAA+CGG | 0.452106 | tig0019143:-55972 | None:intergenic |
| TATATCTCTCAATGAGCATA+AGG | 0.453173 | tig0019143:+52559 | Msa1370720:CDS |
| TTGATTCGTGAGAGTGGTGG+GGG | 0.453706 | tig0019143:+52656 | Msa1370720:CDS |
| TTCCTTCCGTTACCCAGTCC+AGG | 0.459170 | tig0019143:-52083 | None:intergenic |
| GTAAAATTCATGATTGCAAT+GGG | 0.461439 | tig0019143:-52212 | None:intergenic |
| CATCAGATAGAGTTGAAATC+AGG | 0.463046 | tig0019143:-56820 | None:intergenic |
| TTGACATCATATGCTTTCGT+TGG | 0.464208 | tig0019143:-52239 | None:intergenic |
| ATCGTTCACAGAATCTGTTC+CGG | 0.465982 | tig0019143:+50773 | Msa1370720:CDS |
| TTAAAGACTTCGGCGAAGAA+TGG | 0.467001 | tig0019143:+50882 | Msa1370720:CDS |
| CTGAGGAATCGCCACATTCA+GGG | 0.467227 | tig0019143:-52462 | None:intergenic |
| TTTAAGAGAGATTTCGATGC+TGG | 0.469837 | tig0019143:-50864 | None:intergenic |
| CATTTCACCAAACAGCTTCA+AGG | 0.471334 | tig0019143:+50931 | Msa1370720:CDS |
| CTGCTGTGGTTGATGCCATC+AGG | 0.472176 | tig0019143:-53061 | None:intergenic |
| AGAGCGCACAAAACTTTAAA+GGG | 0.476324 | tig0019143:+52704 | Msa1370720:CDS |
| CTCACCTAAGCAGAGGTTGT+TGG | 0.476645 | tig0019143:-54506 | None:intergenic |
| TAATCATTCCGGTGTTCTTG+TGG | 0.477100 | tig0019143:+51195 | Msa1370720:CDS |
| CAATACTGCTAGTATTTCTC+GGG | 0.477701 | tig0019143:+52505 | Msa1370720:CDS |
| TGTCGATCATCAATTATGAT+TGG | 0.479343 | tig0019143:+56944 | Msa1370720:CDS |
| TGGTTTCAAGTCACCGATAA+CGG | 0.480127 | tig0019143:+50902 | Msa1370720:CDS |
| CGTAAAATTCATGATTGCAA+TGG | 0.483954 | tig0019143:-52213 | None:intergenic |
| GTTGATTCGTGAGAGTGGTG+GGG | 0.490939 | tig0019143:+52655 | Msa1370720:CDS |
| ATCATCAAACCAATCGCAAA+AGG | 0.493056 | tig0019143:+50749 | Msa1370720:CDS |
| ACATTGAACAGCAGAAAGAA+AGG | 0.494491 | tig0019143:+53836 | Msa1370720:CDS |
| GGGTTGATTCGTGAGAGTGG+TGG | 0.494804 | tig0019143:+52653 | Msa1370720:CDS |
| CCTGAATGTGGCGATTCCTC+AGG | 0.494938 | tig0019143:+52463 | Msa1370720:CDS |
| GCATATGCCCTTATAGCAAA+AGG | 0.495988 | tig0019143:+51876 | Msa1370720:CDS |
| CATGGAATTGTCCTCATGGC+AGG | 0.498761 | tig0019143:+57175 | Msa1370720:CDS |
| GAATGGATTTACTTTGGAAG+AGG | 0.499091 | tig0019143:+55927 | Msa1370720:CDS |
| TGAACCAACAACCTCTGCTT+AGG | 0.499577 | tig0019143:+54502 | Msa1370720:CDS |
| GATAACATCATAACAGTGCT+TGG | 0.500424 | tig0019143:+51981 | Msa1370720:CDS |
| GGATCAAGATTTATTCATTG+TGG | 0.501006 | tig0019143:+54270 | Msa1370720:CDS |
| GATTTCGATGCTGGTGGCGC+CGG | 0.501956 | tig0019143:-50855 | None:intergenic |
| AACATTGCACGAACTCTTGG+AGG | 0.503231 | tig0019143:-56908 | None:intergenic |
| TTAGATTCTCCCAAGTCCTC+TGG | 0.504018 | tig0019143:+53584 | Msa1370720:CDS |
| ACTTGACGAAAATTCATAAG+AGG | 0.505723 | tig0019143:+57220 | Msa1370720:CDS |
| TCTCAAGGACAGTTGTGAGT+GGG | 0.510002 | tig0019143:+52789 | Msa1370720:CDS |
| ATGGAAAAGCTAATGGCAAA+AGG | 0.512412 | tig0019143:+53702 | Msa1370720:CDS |
| TTGGTTTCAGTATTTACTTG+TGG | 0.514585 | tig0019143:-52950 | None:intergenic |
| CTCAAGGACAGTTGTGAGTG+GGG | 0.515053 | tig0019143:+52790 | Msa1370720:CDS |
| TTGATGATTTGCGATTCAAT+CGG | 0.515545 | tig0019143:-50734 | None:intergenic |
| GAGGTCAGAATTAACAATGC+AGG | 0.518258 | tig0019143:+57239 | Msa1370720:CDS |
| AAGCAACTATTTCTTCCTCA+GGG | 0.518792 | tig0019143:-54814 | None:intergenic |
| GGAGCTTGATTTCTAAGGAC+AGG | 0.519756 | tig0019143:-52929 | None:intergenic |
| ATGCTGTCAATGAATTTATG+TGG | 0.520548 | tig0019143:+52366 | Msa1370720:CDS |
| TTTAATTTATAACGGCATCC+AGG | 0.521120 | tig0019143:-55964 | None:intergenic |
| GTCTCAAGGACAGTTGTGAG+TGG | 0.522054 | tig0019143:+52788 | Msa1370720:CDS |
| AATTGATGATCGACATGCTC+GGG | 0.528848 | tig0019143:-56936 | None:intergenic |
| TCCAAGAGTTCGTGCAATGT+TGG | 0.531112 | tig0019143:+56910 | Msa1370720:CDS |
| TCCAAGCCTGGACTGGGTAA+CGG | 0.532883 | tig0019143:+52077 | Msa1370720:CDS |
| CATTGAACAGCAGAAAGAAA+GGG | 0.533665 | tig0019143:+53837 | Msa1370720:CDS |
| ACGTAAGGAATATGGAAAGC+TGG | 0.534231 | tig0019143:+51315 | Msa1370720:CDS |
| ATCGCCACATTCAGGGATGC+CGG | 0.534608 | tig0019143:-52455 | None:intergenic |
| CTATCTGATGGTGATGGTCA+TGG | 0.537313 | tig0019143:+56833 | Msa1370720:CDS |
| GAACAATCTTTCCAGTTCGG+TGG | 0.538298 | tig0019143:-53875 | None:intergenic |
| TCACAACTGTCCTTGAGACC+AGG | 0.539057 | tig0019143:-52784 | None:intergenic |
| AAGGACAGGCACTTCAGATA+AGG | 0.540336 | tig0019143:-52915 | None:intergenic |
| GGAATACTTCAGCAGAATGA+AGG | 0.543403 | tig0019143:+53903 | Msa1370720:CDS |
| TTGAAAAGAAAATTGCATGT+TGG | 0.544226 | tig0019143:-53621 | None:intergenic |
| TCAACTAAATGCCGCATGGT+TGG | 0.546469 | tig0019143:-57198 | None:intergenic |
| AACACCATGTTTGGAGTCGA+AGG | 0.548138 | tig0019143:+56006 | Msa1370720:CDS |
| AACGAGAACAGTGAATGAAC+CGG | 0.548570 | tig0019143:+51153 | Msa1370720:CDS |
| TTGTTGTAAGCCCTCTCTAA+GGG | 0.551985 | tig0019143:-52318 | None:intergenic |
| GAAGGGTTGATTCGTGAGAG+TGG | 0.553809 | tig0019143:+52650 | Msa1370720:CDS |
| AATGCTTCTGAATCTGATGA+TGG | 0.555834 | tig0019143:+52605 | Msa1370720:CDS |
| GACGAGTTCTTTAACGGCGG+AGG | 0.557460 | tig0019143:-50816 | None:intergenic |
| TTGGGAGAATCTAATCGTGC+AGG | 0.560739 | tig0019143:-53575 | None:intergenic |
| CAAGTCACCGATAACGGTTG+CGG | 0.561953 | tig0019143:+50908 | Msa1370720:CDS |
| ATCAAGCTACCCTGGTCTCA+AGG | 0.562398 | tig0019143:+52774 | Msa1370720:CDS |
| TAACGGCGGAGGAGAGGTCG+AGG | 0.563344 | tig0019143:-50805 | None:intergenic |
| AAGAGAGATTTCGATGCTGG+TGG | 0.566861 | tig0019143:-50861 | None:intergenic |
| CTCAGATATACATAATGACA+TGG | 0.567030 | tig0019143:-52030 | None:intergenic |
| ATCTTCTGACCAGAGGACTT+GGG | 0.570934 | tig0019143:-53593 | None:intergenic |
| TAATTGATGATCGACATGCT+CGG | 0.574476 | tig0019143:-56937 | None:intergenic |
| TAAGAAGCAAAGAGTTTAAG+CGG | 0.579709 | tig0019143:+51287 | Msa1370720:CDS |
| TCACCATGGAATTGTCCTCA+TGG | 0.580634 | tig0019143:+57171 | Msa1370720:CDS |
| TTATTGCAAGCCCTTAGAGA+GGG | 0.581606 | tig0019143:+52308 | Msa1370720:CDS |
| TGAGTTCTCTTTGTGCTTTG+GGG | 0.584399 | tig0019143:+51116 | Msa1370720:CDS |
| TTCGACGAGTTCTTTAACGG+CGG | 0.588864 | tig0019143:-50819 | None:intergenic |
| TATTCTCACATGTTGAAGAA+GGG | 0.589142 | tig0019143:+52633 | Msa1370720:CDS |
| ATTATGATTGGTGATGCACT+TGG | 0.592485 | tig0019143:+56956 | Msa1370720:CDS |
| GTTTAAGCGGAATATACGTA+AGG | 0.594722 | tig0019143:+51300 | Msa1370720:CDS |
| ACAAATTGGAACGACTGTGA+CGG | 0.594875 | tig0019143:+51237 | Msa1370720:CDS |
| TCAAGGACAGTTGTGAGTGG+GGG | 0.595006 | tig0019143:+52791 | Msa1370720:CDS |
| GAGGATCTAAATGCACCACC+TGG | 0.595531 | tig0019143:+55946 | Msa1370720:CDS |
| CTGATTTCAACTCTATCTGA+TGG | 0.597097 | tig0019143:+56821 | Msa1370720:CDS |
| ACTGGAAAGATTGTTCAAGA+AGG | 0.599565 | tig0019143:+53882 | Msa1370720:CDS |
| AATAGTTGCTTCAATTCACA+TGG | 0.600812 | tig0019143:+54826 | Msa1370720:CDS |
| TTGCAGCAACGTAATCCTGA+TGG | 0.603672 | tig0019143:+53046 | Msa1370720:CDS |
| GAAATCTCTCTTAAAGACTT+CGG | 0.605620 | tig0019143:+50872 | Msa1370720:CDS |
| GAGGTCGAGGATGACTTGAC+CGG | 0.606410 | tig0019143:-50792 | None:intergenic |
| ACTTTAAAGGGTGACAAGAG+TGG | 0.606920 | tig0019143:+52716 | Msa1370720:CDS |
| GTTCTTTAACGGCGGAGGAG+AGG | 0.606990 | tig0019143:-50811 | None:intergenic |
| TCAACTCTATCTGATGGTGA+TGG | 0.607257 | tig0019143:+56827 | Msa1370720:CDS |
| TCATTCCGGTGTTCTTGTGG+CGG | 0.607818 | tig0019143:+51198 | Msa1370720:CDS |
| TGGAAGAAATGAAATGCAGA+AGG | 0.612549 | tig0019143:+56976 | Msa1370720:CDS |
| CACAACTGTCCTTGAGACCA+GGG | 0.613211 | tig0019143:-52783 | None:intergenic |
| TCTACCTTCGACTCCAAACA+TGG | 0.613546 | tig0019143:-56010 | None:intergenic |
| CTTATTGCAAGCCCTTAGAG+AGG | 0.613621 | tig0019143:+52307 | Msa1370720:CDS |
| TTTGCGCAATCAAGCTACCC+TGG | 0.613771 | tig0019143:+52766 | Msa1370720:CDS |
| GCAGGCGATGAACAAATTGG+AGG | 0.613983 | tig0019143:-53557 | None:intergenic |
| TGGAGGGCAGACTGAATCTG+AGG | 0.614764 | tig0019143:-56891 | None:intergenic |
| GTCGAAAATAGCTTAGACGC+CGG | 0.617734 | tig0019143:+50836 | Msa1370720:CDS |
| AATAATTCTGACCGCAACAG+TGG | 0.621125 | tig0019143:+52533 | Msa1370720:CDS |
| AGCCTGGACTGGGTAACGGA+AGG | 0.623995 | tig0019143:+52081 | Msa1370720:CDS |
| CAGGCGATGAACAAATTGGA+GGG | 0.629188 | tig0019143:-53556 | None:intergenic |
| CTGCCATGAGGACAATTCCA+TGG | 0.639214 | tig0019143:-57174 | None:intergenic |
| ACATTGCACGAACTCTTGGA+GGG | 0.639683 | tig0019143:-56907 | None:intergenic |
| CAAGTCAACTAAATGCCGCA+TGG | 0.640175 | tig0019143:-57202 | None:intergenic |
| GAAACCGGCATCCCTGAATG+TGG | 0.644771 | tig0019143:+52451 | Msa1370720:CDS |
| ATAAGTTCTCACCTAAGCAG+AGG | 0.645938 | tig0019143:-54513 | None:intergenic |
| TACTGACAGAGAACCTAACA+TGG | 0.647355 | tig0019143:+53114 | Msa1370720:CDS |
| TCAGATATACATAATGACAT+GGG | 0.650966 | tig0019143:-52029 | None:intergenic |
| AGCAACTATTTCTTCCTCAG+GGG | 0.653963 | tig0019143:-54813 | None:intergenic |
| TCTGTGGTACTTAAAACCCA+AGG | 0.654508 | tig0019143:+51942 | Msa1370720:CDS |
| GGAGAATATCTTCTGACCAG+AGG | 0.658458 | tig0019143:-53600 | None:intergenic |
| CGCATGGTTGGCCTGCCATG+AGG | 0.658661 | tig0019143:-57186 | None:intergenic |
| CTCATGGCAGGCCAACCATG+CGG | 0.662792 | tig0019143:+57187 | Msa1370720:CDS |
| AATTTATAACGGCATCCAGG+TGG | 0.663899 | tig0019143:-55961 | None:intergenic |
| GAGATATACTACCACTGTTG+CGG | 0.665026 | tig0019143:-52544 | None:intergenic |
| TCAGTATAATGCTCTTCCTG+AGG | 0.671539 | tig0019143:-52479 | None:intergenic |
| ACAGTGAATTTACACTGCTG+TGG | 0.676981 | tig0019143:-53075 | None:intergenic |
| GATGCCGGTTTCGTTACGAT+AGG | 0.680524 | tig0019143:-52440 | None:intergenic |
| TGGCAGAGCTGAAATCACCA+TGG | 0.715825 | tig0019143:+57157 | Msa1370720:CDS |
| AAGATTGGAGTTATCCCCTG+AGG | 0.743451 | tig0019143:+54799 | Msa1370720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAGAATATTAATAATGT+GGG | + | tig0019143:51681-51700 | Msa1370720:intron | 10.0% |
| !!! | CATTTAGAATATTAATAATG+TGG | + | tig0019143:51680-51699 | Msa1370720:intron | 15.0% |
| !!! | TTTAGAATATTAATAATGTG+GGG | + | tig0019143:51682-51701 | Msa1370720:intron | 15.0% |
| !!! | TATTACTTTCTACAATTTTA+AGG | + | tig0019143:51712-51731 | Msa1370720:intron | 15.0% |
| !!! | TAATTTTTTTAGTCACTATA+CGG | + | tig0019143:53786-53805 | Msa1370720:intron | 15.0% |
| !!! | TAAATATGATTTTAGTATGA+TGG | - | tig0019143:54120-54139 | None:intergenic | 15.0% |
| !!! | TATATTTAATCTGAAATTGT+AGG | - | tig0019143:54165-54184 | None:intergenic | 15.0% |
| !! | TAAATATATCATGTATTCAA+AGG | + | tig0019143:54177-54196 | Msa1370720:intron | 15.0% |
| !!! | ATTATCTTTTTGTGTATTTA+AGG | + | tig0019143:55123-55142 | Msa1370720:intron | 15.0% |
| !!! | TTCAATTTTTGCATTTATTT+CGG | + | tig0019143:56331-56350 | Msa1370720:intron | 15.0% |
| !! | AATTTATTACACTGAAATAT+TGG | + | tig0019143:56489-56508 | Msa1370720:intron | 15.0% |
| !!! | TACAATCTAAAAATAACTTT+TGG | - | tig0019143:57289-57308 | None:intergenic | 15.0% |
| !!! | TATTTTTAGATTGTAAGTTA+AGG | + | tig0019143:57294-57313 | Msa1370720:three_prime_UTR | 15.0% |
| !!! | ATTTTTAGATTGTAAGTTAA+GGG | + | tig0019143:57295-57314 | Msa1370720:three_prime_UTR | 15.0% |
| !!! | CTAATACTACATTTTTAAAG+GGG | - | tig0019143:50967-50986 | None:intergenic | 20.0% |
| !!! | CCTAATACTACATTTTTAAA+GGG | - | tig0019143:50968-50987 | None:intergenic | 20.0% |
| !!! | CCTTTAAAAATGTAGTATTA+GGG | + | tig0019143:50966-50985 | Msa1370720:intron | 20.0% |
| !!! | ATTTTGTTTGAAATGATTTC+AGG | + | tig0019143:51006-51025 | Msa1370720:intron | 20.0% |
| !! | AATTTAGGTATTTACTCAAA+TGG | - | tig0019143:51417-51436 | None:intergenic | 20.0% |
| !! | ATTTGAGTAAATACCTAAAT+TGG | + | tig0019143:51416-51435 | Msa1370720:intron | 20.0% |
| !! | TTAGAATATTAATAATGTGG+GGG | + | tig0019143:51683-51702 | Msa1370720:intron | 20.0% |
| !! | AACAAAAAATAAATCCCAAT+AGG | - | tig0019143:51765-51784 | None:intergenic | 20.0% |
| !! | TATGATATATTCTTTCTGTT+GGG | + | tig0019143:51843-51862 | Msa1370720:intron | 20.0% |
| !!! | AGACAGTATTTTTTTGTAAA+CGG | + | tig0019143:52116-52135 | Msa1370720:CDS | 20.0% |
| !!! | AAAAATATTTTCCTCTTATC+AGG | - | tig0019143:52272-52291 | None:intergenic | 20.0% |
| !!! | ATCATTTTCTGATTTAGTAA+CGG | - | tig0019143:53346-53365 | None:intergenic | 20.0% |
| !!! | TATGATTTTCCTACTTTATA+AGG | - | tig0019143:53746-53765 | None:intergenic | 20.0% |
| !!! | AAAACATTGATTTGGTTTTA+TGG | - | tig0019143:54071-54090 | None:intergenic | 20.0% |
| !!! | TAAAACCAAATCAATGTTTT+TGG | + | tig0019143:54071-54090 | Msa1370720:intron | 20.0% |
| !!! | CTTTGATATTATGTTTTAAC+AGG | + | tig0019143:54207-54226 | Msa1370720:intron | 20.0% |
| !!! | AAAAAAAACATGATTTGTGA+TGG | + | tig0019143:54409-54428 | Msa1370720:intron | 20.0% |
| !! | CTAATAAAAATTGCATATGT+AGG | + | tig0019143:54771-54790 | Msa1370720:intron | 20.0% |
| !!! | ATCAATATGTTCATTTTCTA+AGG | - | tig0019143:55105-55124 | None:intergenic | 20.0% |
| !! | AAAAACATGCATATGTATAT+TGG | + | tig0019143:55324-55343 | Msa1370720:intron | 20.0% |
| !!! | ATATGTTTGAAATCATTACT+TGG | + | tig0019143:55354-55373 | Msa1370720:intron | 20.0% |
| !! | ATCAAATTCAACAAGTTATT+TGG | - | tig0019143:55430-55449 | None:intergenic | 20.0% |
| !!! | TTGATTTCATATGATGTTTT+TGG | + | tig0019143:55445-55464 | Msa1370720:intron | 20.0% |
| !! | ACATTTGCATAATTTATGAA+AGG | + | tig0019143:55720-55739 | Msa1370720:intron | 20.0% |
| !! | ATAGAATCCATAAAATTCAA+AGG | - | tig0019143:56037-56056 | None:intergenic | 20.0% |
| !! | GATTAATTTAATGATTCTGT+TGG | + | tig0019143:56061-56080 | Msa1370720:intron | 20.0% |
| !!! | TTCAATTTTTGCATTCATTT+CGG | + | tig0019143:56167-56186 | Msa1370720:intron | 20.0% |
| !!! | AATGTCATTTGATATTTGAT+TGG | + | tig0019143:56248-56267 | Msa1370720:intron | 20.0% |
| !! | TTAGTTGAACAATAAATGTA+AGG | + | tig0019143:57074-57093 | Msa1370720:intron | 20.0% |
| !! | CCCTTTAAAAATGTAGTATT+AGG | + | tig0019143:50965-50984 | Msa1370720:intron | 25.0% |
| !! | CCCTAATACTACATTTTTAA+AGG | - | tig0019143:50969-50988 | None:intergenic | 25.0% |
| !! | ACAATTTCAAGTACCAATTT+AGG | - | tig0019143:51432-51451 | None:intergenic | 25.0% |
| ! | AATTGGTACTTGAAATTGTA+AGG | + | tig0019143:51433-51452 | Msa1370720:intron | 25.0% |
| ! | TGTAATTTCTTAGATCGTTT+AGG | - | tig0019143:51493-51512 | None:intergenic | 25.0% |
| ! | GATAACCTATACATACAAAT+CGG | + | tig0019143:51624-51643 | Msa1370720:intron | 25.0% |
| ! | TGATTAGCATTATGCAATTT+CGG | + | tig0019143:51653-51672 | Msa1370720:intron | 25.0% |
| ! | GTATGATATATTCTTTCTGT+TGG | + | tig0019143:51842-51861 | Msa1370720:intron | 25.0% |
| !!! | TTTTAGAGAATCATTTCCTT+GGG | - | tig0019143:51961-51980 | None:intergenic | 25.0% |
| ! | TCAGATATACATAATGACAT+GGG | - | tig0019143:52032-52051 | None:intergenic | 25.0% |
| ! | GTAAAATTCATGATTGCAAT+GGG | - | tig0019143:52215-52234 | None:intergenic | 25.0% |
| !! | CATTGCAATCATGAATTTTA+CGG | + | tig0019143:52214-52233 | Msa1370720:CDS | 25.0% |
| !!! | TTCAGAAGCATTATTAGAAT+CGG | - | tig0019143:52597-52616 | None:intergenic | 25.0% |
| ! | TACAGCAACAAAATTGTTAA+GGG | - | tig0019143:52864-52883 | None:intergenic | 25.0% |
| ! | TTACAGCAACAAAATTGTTA+AGG | - | tig0019143:52865-52884 | None:intergenic | 25.0% |
| ! | AACAAGATCATATCTTCATT+TGG | + | tig0019143:52982-53001 | Msa1370720:CDS | 25.0% |
| ! | GCTTAGAAGTTTCATTAATT+TGG | - | tig0019143:53009-53028 | None:intergenic | 25.0% |
| !! | TCATTTTCTGATTTAGTAAC+GGG | - | tig0019143:53345-53364 | None:intergenic | 25.0% |
| ! | TTGAAAAGAAAATTGCATGT+TGG | - | tig0019143:53624-53643 | None:intergenic | 25.0% |
| !!! | TCAATGCTATTTTAGTAAGT+AGG | + | tig0019143:54000-54019 | Msa1370720:intron | 25.0% |
| !!! | CAATGCTATTTTAGTAAGTA+GGG | + | tig0019143:54001-54020 | Msa1370720:intron | 25.0% |
| !! | GTATTCCAAAAACATTGATT+TGG | - | tig0019143:54079-54098 | None:intergenic | 25.0% |
| !!! | ATTATGTTTTAACAGGTGAT+TGG | + | tig0019143:54214-54233 | Msa1370720:intron | 25.0% |
| ! | TTCAATCTTGGATTTATCAT+TGG | + | tig0019143:54241-54260 | Msa1370720:CDS | 25.0% |
| ! | TGGATTTATCATTGGTAAAT+TGG | + | tig0019143:54249-54268 | Msa1370720:CDS | 25.0% |
| !! | ATATGGATTAATCATTCTAC+AGG | - | tig0019143:54353-54372 | None:intergenic | 25.0% |
| ! | AGCAAAAGAATGCATTTATA+TGG | - | tig0019143:54370-54389 | None:intergenic | 25.0% |
| ! | GATCATGAACAAATAAAGAA+AGG | - | tig0019143:54742-54761 | None:intergenic | 25.0% |
| ! | TCTGACAATAACACAAAATA+TGG | - | tig0019143:54906-54925 | None:intergenic | 25.0% |
| ! | AGAAACTATATTTCATCAAC+AGG | + | tig0019143:54923-54942 | Msa1370720:intron | 25.0% |
| ! | AAATTCAACAAGTTATTTGG+TGG | - | tig0019143:55427-55446 | None:intergenic | 25.0% |
| !! | TTTAATTTCTAATGTGCATG+TGG | - | tig0019143:55700-55719 | None:intergenic | 25.0% |
| ! | CATAATTTATGAAAGGTTGT+TGG | + | tig0019143:55727-55746 | Msa1370720:intron | 25.0% |
| ! | AGTGACTGAATCAAATATAA+TGG | - | tig0019143:55758-55777 | None:intergenic | 25.0% |
| ! | GCAACTAAAGCATAAAATAT+TGG | - | tig0019143:55844-55863 | None:intergenic | 25.0% |
| ! | ATTTGCATTATATCCATTTC+AGG | + | tig0019143:55902-55921 | Msa1370720:intron | 25.0% |
| !! | GGACAGACTTTAATTTATAA+CGG | - | tig0019143:55975-55994 | None:intergenic | 25.0% |
| ! | AAATGTTTCAAATAAACCCT+TGG | + | tig0019143:56582-56601 | Msa1370720:intron | 25.0% |
| ! | ACATATTTGAATCTTGTGAA+TGG | + | tig0019143:56635-56654 | Msa1370720:intron | 25.0% |
| ! | TTGTCTATAACTACCAATTA+TGG | - | tig0019143:56867-56886 | None:intergenic | 25.0% |
| ! | AATGCAGGAGTAATTAATTA+TGG | + | tig0019143:57254-57273 | Msa1370720:exon | 25.0% |
| ! | TTGATGATTTGCGATTCAAT+CGG | - | tig0019143:50737-50756 | None:intergenic | 30.0% |
| ! | ATTTTCGACGAGTTCTTTAA+CGG | - | tig0019143:50825-50844 | None:intergenic | 30.0% |
| GAAATCTCTCTTAAAGACTT+CGG | + | tig0019143:50872-50891 | Msa1370720:CDS | 30.0% | |
| !! | TTGAAATGATTTCAGGTTCT+TGG | + | tig0019143:51013-51032 | Msa1370720:intron | 30.0% |
| CATTTGACGTTTAATCATTC+CGG | + | tig0019143:51184-51203 | Msa1370720:CDS | 30.0% | |
| TTAAACTCTTTGCTTCTTAC+AGG | - | tig0019143:51286-51305 | None:intergenic | 30.0% | |
| TAAGAAGCAAAGAGTTTAAG+CGG | + | tig0019143:51287-51306 | Msa1370720:CDS | 30.0% | |
| GTCCTACAAATAATAACGTA+GGG | - | tig0019143:51535-51554 | None:intergenic | 30.0% | |
| AGTCCTACAAATAATAACGT+AGG | - | tig0019143:51536-51555 | None:intergenic | 30.0% | |
| TGTAGGACTATAATGACATT+AGG | + | tig0019143:51547-51566 | Msa1370720:intron | 30.0% | |
| TAGGAATAGAATGGAGTAAT+TGG | - | tig0019143:51746-51765 | None:intergenic | 30.0% | |
| TTACTCCATTCTATTCCTAT+TGG | + | tig0019143:51747-51766 | Msa1370720:intron | 30.0% | |
| TACTCCATTCTATTCCTATT+GGG | + | tig0019143:51748-51767 | Msa1370720:intron | 30.0% | |
| AAATCCCAATAGGAATAGAA+TGG | - | tig0019143:51755-51774 | None:intergenic | 30.0% | |
| CAGTGAAACAGGAATAAAAA+AGG | - | tig0019143:51809-51828 | None:intergenic | 30.0% | |
| ATTAACAAACTCAGTGAAAC+AGG | - | tig0019143:51820-51839 | None:intergenic | 30.0% | |
| TGGCAAAAATGTAAAATCTG+TGG | + | tig0019143:51926-51945 | Msa1370720:CDS | 30.0% | |
| !! | CTTTTAGAGAATCATTTCCT+TGG | - | tig0019143:51962-51981 | None:intergenic | 30.0% |
| CTCAGATATACATAATGACA+TGG | - | tig0019143:52033-52052 | None:intergenic | 30.0% | |
| ! | TTCACAAGTTTTCCGATTTT+TGG | - | tig0019143:52158-52177 | None:intergenic | 30.0% |
| CGTAAAATTCATGATTGCAA+TGG | - | tig0019143:52216-52235 | None:intergenic | 30.0% | |
| AAATTCATTGACAGCATAAG+AGG | - | tig0019143:52363-52382 | None:intergenic | 30.0% | |
| ATGCTGTCAATGAATTTATG+TGG | + | tig0019143:52366-52385 | Msa1370720:CDS | 30.0% | |
| TCAATACTGCTAGTATTTCT+CGG | + | tig0019143:52504-52523 | Msa1370720:CDS | 30.0% | |
| TATATCTCTCAATGAGCATA+AGG | + | tig0019143:52559-52578 | Msa1370720:CDS | 30.0% | |
| TATTCTCACATGTTGAAGAA+GGG | + | tig0019143:52633-52652 | Msa1370720:CDS | 30.0% | |
| TTGGTTTCAGTATTTACTTG+TGG | - | tig0019143:52953-52972 | None:intergenic | 30.0% | |
| ! | GAAGATATGATCTTGTTATC+AGG | - | tig0019143:52979-52998 | None:intergenic | 30.0% |
| ! | TGCAAATTTTCAATCTCACT+TGG | - | tig0019143:53031-53050 | None:intergenic | 30.0% |
| !! | TTTAAGTTGAAGTTCCTTAG+TGG | + | tig0019143:53315-53334 | Msa1370720:intron | 30.0% |
| AGTATGAAACAAAGACAAAG+TGG | - | tig0019143:53416-53435 | None:intergenic | 30.0% | |
| TTTATCAGATTGTTGCTAGA+TGG | - | tig0019143:53509-53528 | None:intergenic | 30.0% | |
| ! | AAATACTACAGAGCATGTTT+TGG | + | tig0019143:53526-53545 | Msa1370720:CDS | 30.0% |
| ! | TTTTCCATATCTGTATTTGC+TGG | - | tig0019143:53690-53709 | None:intergenic | 30.0% |
| TACAGATATGGAAAAGCTAA+TGG | + | tig0019143:53695-53714 | Msa1370720:CDS | 30.0% | |
| CTTAGAAAAACCTAACAACT+TGG | - | tig0019143:54036-54055 | None:intergenic | 30.0% | |
| !!! | ACATTGATTTGGTTTTATGG+TGG | - | tig0019143:54068-54087 | None:intergenic | 30.0% |
| !! | AGTATGATGGATTAGATATG+CGG | - | tig0019143:54107-54126 | None:intergenic | 30.0% |
| GGATCAAGATTTATTCATTG+TGG | + | tig0019143:54270-54289 | Msa1370720:CDS | 30.0% | |
| AGATTTATTCATTGTGGATC+AGG | + | tig0019143:54276-54295 | Msa1370720:CDS | 30.0% | |
| CTGTAGTTTCAAAAACATAG+TGG | - | tig0019143:54308-54327 | None:intergenic | 30.0% | |
| TTGGTTCAATATGGTTGATT+GGG | - | tig0019143:54490-54509 | None:intergenic | 30.0% | |
| TGTTGAGTTCAAAGTTACAA+AGG | + | tig0019143:54668-54687 | Msa1370720:intron | 30.0% | |
| AATAGTTGCTTCAATTCACA+TGG | + | tig0019143:54826-54845 | Msa1370720:CDS | 30.0% | |
| ATATCACCGCTTGATAAATA+TGG | - | tig0019143:54874-54893 | None:intergenic | 30.0% | |
| GAAAGTGAATAAAGAGATCA+TGG | - | tig0019143:55028-55047 | None:intergenic | 30.0% | |
| ATTATCAATTAAAGCAGCAC+AGG | - | tig0019143:55257-55276 | None:intergenic | 30.0% | |
| CAACTAGTTGAACAATTTGA+GGG | - | tig0019143:55622-55641 | None:intergenic | 30.0% | |
| ACAACTAGTTGAACAATTTG+AGG | - | tig0019143:55623-55642 | None:intergenic | 30.0% | |
| TAAGCTAATGTCTTCAACAA+TGG | + | tig0019143:55649-55668 | Msa1370720:intron | 30.0% | |
| !!! | AGTAAGATACTTTTTTTCCG+TGG | + | tig0019143:55783-55802 | Msa1370720:intron | 30.0% |
| !!! | GTAAGATACTTTTTTTCCGT+GGG | + | tig0019143:55784-55803 | Msa1370720:intron | 30.0% |
| !!! | TAAGATACTTTTTTTCCGTG+GGG | + | tig0019143:55785-55804 | Msa1370720:intron | 30.0% |
| !! | AATTTTAAAGATAACCCCCA+CGG | - | tig0019143:55803-55822 | None:intergenic | 30.0% |
| !!! | TGCGTTTTTTTGCATCTTTA+TGG | + | tig0019143:55861-55880 | Msa1370720:intron | 30.0% |
| TATATCCATTTCAGGAAGAA+TGG | + | tig0019143:55910-55929 | Msa1370720:intron | 30.0% | |
| TAAATCCATTCTTCCTGAAA+TGG | - | tig0019143:55918-55937 | None:intergenic | 30.0% | |
| ! | TTTAATTTATAACGGCATCC+AGG | - | tig0019143:55967-55986 | None:intergenic | 30.0% |
| !! | AACATGGTGTTTTTACTGTA+GGG | - | tig0019143:55997-56016 | None:intergenic | 30.0% |
| !! | AAACATGGTGTTTTTACTGT+AGG | - | tig0019143:55998-56017 | None:intergenic | 30.0% |
| TACAGTAAAAACACCATGTT+TGG | + | tig0019143:55997-56016 | Msa1370720:CDS | 30.0% | |
| ! | GGTAGAACCTTTGAATTTTA+TGG | + | tig0019143:56027-56046 | Msa1370720:intron | 30.0% |
| ! | TATGTGATTCTTTTGTGCAT+TGG | + | tig0019143:56272-56291 | Msa1370720:intron | 30.0% |
| TTTGCATTTATTTCGGAAGA+TGG | + | tig0019143:56338-56357 | Msa1370720:intron | 30.0% | |
| TTGATACAAGGTTATGTGAA+TGG | - | tig0019143:56419-56438 | None:intergenic | 30.0% | |
| ATAACCTTGTATCAAGATGA+TGG | + | tig0019143:56424-56443 | Msa1370720:intron | 30.0% | |
| ! | ATCAAGATGATGGTAGAAAA+TGG | + | tig0019143:56434-56453 | Msa1370720:intron | 30.0% |
| GAAATTCTGTATTAGAAACG+AGG | + | tig0019143:56511-56530 | Msa1370720:intron | 30.0% | |
| ! | CTCATTTCTTATTTCGTTTC+TGG | - | tig0019143:56561-56580 | None:intergenic | 30.0% |
| TGTCGATCATCAATTATGAT+TGG | + | tig0019143:56944-56963 | Msa1370720:CDS | 30.0% | |
| TGTGCACGTGTTATAAAATA+AGG | - | tig0019143:57036-57055 | None:intergenic | 30.0% | |
| ACTAAACCAGATACTTGTAA+AGG | - | tig0019143:57059-57078 | None:intergenic | 30.0% | |
| ACTTGACGAAAATTCATAAG+AGG | + | tig0019143:57220-57239 | Msa1370720:CDS | 30.0% | |
| ! | CTCTCAAACTTCACATTTTA+TGG | + | tig0019143:57365-57384 | Msa1370720:three_prime_UTR | 30.0% |
| ! | TCAAACTTCACATTTTATGG+AGG | + | tig0019143:57368-57387 | Msa1370720:three_prime_UTR | 30.0% |
| ! | CAAACTTCACATTTTATGGA+GGG | + | tig0019143:57369-57388 | Msa1370720:three_prime_UTR | 30.0% |
| ATCATCAAACCAATCGCAAA+AGG | + | tig0019143:50749-50768 | Msa1370720:CDS | 35.0% | |
| TTTAAGAGAGATTTCGATGC+TGG | - | tig0019143:50867-50886 | None:intergenic | 35.0% | |
| TAGAATACCTTGAAGCTGTT+TGG | - | tig0019143:50941-50960 | None:intergenic | 35.0% | |
| !! | CTGACTACTTTTGGATTTAG+AGG | + | tig0019143:51085-51104 | Msa1370720:CDS | 35.0% |
| ! | TACTTTTGGATTTAGAGGTG+AGG | + | tig0019143:51090-51109 | Msa1370720:CDS | 35.0% |
| TTGAGTTCTCTTTGTGCTTT+GGG | + | tig0019143:51115-51134 | Msa1370720:CDS | 35.0% | |
| AAGAAAATTGCGCGACAAAT+TGG | + | tig0019143:51223-51242 | Msa1370720:CDS | 35.0% | |
| GTTTAAGCGGAATATACGTA+AGG | + | tig0019143:51300-51319 | Msa1370720:CDS | 35.0% | |
| CGGAATATACGTAAGGAATA+TGG | + | tig0019143:51307-51326 | Msa1370720:CDS | 35.0% | |
| GTCCCTACGTTATTATTTGT+AGG | + | tig0019143:51530-51549 | Msa1370720:intron | 35.0% | |
| GGACTATAATGACATTAGGT+TGG | + | tig0019143:51551-51570 | Msa1370720:intron | 35.0% | |
| !! | GACATTAGGTTGGTAATATC+AGG | + | tig0019143:51561-51580 | Msa1370720:intron | 35.0% |
| !! | CTTCACCGATTTGTATGTAT+AGG | - | tig0019143:51632-51651 | None:intergenic | 35.0% |
| GATAACATCATAACAGTGCT+TGG | + | tig0019143:51981-52000 | Msa1370720:CDS | 35.0% | |
| TTGACATCATATGCTTTCGT+TGG | - | tig0019143:52242-52261 | None:intergenic | 35.0% | |
| TCAATGTAACTCCTGATAAG+AGG | + | tig0019143:52258-52277 | Msa1370720:CDS | 35.0% | |
| ! | CTCAAAACAGTCTTCTTTTG+CGG | - | tig0019143:52396-52415 | None:intergenic | 35.0% |
| CAATACTGCTAGTATTTCTC+GGG | + | tig0019143:52505-52524 | Msa1370720:CDS | 35.0% | |
| AATGCTTCTGAATCTGATGA+TGG | + | tig0019143:52605-52624 | Msa1370720:CDS | 35.0% | |
| CTATTCTCACATGTTGAAGA+AGG | + | tig0019143:52632-52651 | Msa1370720:CDS | 35.0% | |
| AGAGCGCACAAAACTTTAAA+GGG | + | tig0019143:52704-52723 | Msa1370720:CDS | 35.0% | |
| ! | TGATCTTGTTATCAGGTCAT+TGG | - | tig0019143:52972-52991 | None:intergenic | 35.0% |
| TAGCGATTGAAACCAATCTT+CGG | - | tig0019143:53164-53183 | None:intergenic | 35.0% | |
| !! | CTTTTCAAGACCTTAAGAGT+AGG | + | tig0019143:53636-53655 | Msa1370720:CDS | 35.0% |
| TCTTCTCTTTCCTACTCTTA+AGG | - | tig0019143:53649-53668 | None:intergenic | 35.0% | |
| GAAAGAGAAGAGACTTTCTT+TGG | + | tig0019143:53658-53677 | Msa1370720:CDS | 35.0% | |
| CAATCCAGCAAATACAGATA+TGG | + | tig0019143:53683-53702 | Msa1370720:CDS | 35.0% | |
| ATGGAAAAGCTAATGGCAAA+AGG | + | tig0019143:53702-53721 | Msa1370720:CDS | 35.0% | |
| TCGTACTCTCCTTATAAAGT+AGG | + | tig0019143:53734-53753 | Msa1370720:intron | 35.0% | |
| ACATTGAACAGCAGAAAGAA+AGG | + | tig0019143:53836-53855 | Msa1370720:CDS | 35.0% | |
| CATTGAACAGCAGAAAGAAA+GGG | + | tig0019143:53837-53856 | Msa1370720:CDS | 35.0% | |
| CTTGAACAATCTTTCCAGTT+CGG | - | tig0019143:53881-53900 | None:intergenic | 35.0% | |
| ACTGGAAAGATTGTTCAAGA+AGG | + | tig0019143:53882-53901 | Msa1370720:CDS | 35.0% | |
| !! | TAGCATTGAGTATTGACATC+TGG | - | tig0019143:53989-54008 | None:intergenic | 35.0% |
| GTGATTGGACAATTCAATCT+TGG | + | tig0019143:54229-54248 | Msa1370720:CDS | 35.0% | |
| TTAATCATTCTACAGGATGG+TGG | - | tig0019143:54346-54365 | None:intergenic | 35.0% | |
| GGATTAATCATTCTACAGGA+TGG | - | tig0019143:54349-54368 | None:intergenic | 35.0% | |
| ! | GTTGGTTCAATATGGTTGAT+TGG | - | tig0019143:54491-54510 | None:intergenic | 35.0% |
| CAATAATCACATGGTAAAGC+TGG | + | tig0019143:54595-54614 | Msa1370720:intron | 35.0% | |
| ! | CTTATTCTGCTGCAAAGTTT+TGG | + | tig0019143:54630-54649 | Msa1370720:intron | 35.0% |
| CATATGTAGGCCAATAAGAT+TGG | + | tig0019143:54784-54803 | Msa1370720:intron | 35.0% | |
| ! | AAGCAACTATTTCTTCCTCA+GGG | - | tig0019143:54817-54836 | None:intergenic | 35.0% |
| CAATTCACATGGACATAATC+AGG | + | tig0019143:54837-54856 | Msa1370720:CDS | 35.0% | |
| CTAGAGCCATATTTATCAAG+CGG | + | tig0019143:54865-54884 | Msa1370720:intron | 35.0% | |
| AATTCATGACTGGTGCATTA+GGG | - | tig0019143:55175-55194 | None:intergenic | 35.0% | |
| AAATTCATGACTGGTGCATT+AGG | - | tig0019143:55176-55195 | None:intergenic | 35.0% | |
| ! | ATGTCAAGTTTTGCGTAGTA+GGG | - | tig0019143:55199-55218 | None:intergenic | 35.0% |
| TCTGCATCTTCACATGATTA+AGG | - | tig0019143:55382-55401 | None:intergenic | 35.0% | |
| AAGTTCAAACTTCACAGCTT+TGG | - | tig0019143:55594-55613 | None:intergenic | 35.0% | |
| ! | TGTTGAAGACATTAGCTTAC+AGG | - | tig0019143:55648-55667 | None:intergenic | 35.0% |
| !!! | AAGATACTTTTTTTCCGTGG+GGG | + | tig0019143:55786-55805 | Msa1370720:intron | 35.0% |
| ! | CAGGAAGAATGGATTTACTT+TGG | + | tig0019143:55921-55940 | Msa1370720:intron | 35.0% |
| ! | GAATGGATTTACTTTGGAAG+AGG | + | tig0019143:55927-55946 | Msa1370720:CDS | 35.0% |
| !! | ACATGGTGTTTTTACTGTAG+GGG | - | tig0019143:55996-56015 | None:intergenic | 35.0% |
| TATATAGTCATGATCGACCA+AGG | + | tig0019143:56086-56105 | Msa1370720:intron | 35.0% | |
| ATATAGTCATGATCGACCAA+GGG | + | tig0019143:56087-56106 | Msa1370720:intron | 35.0% | |
| GGAAAACATATTGTGTGCAT+TGG | + | tig0019143:56108-56127 | Msa1370720:intron | 35.0% | |
| TTCATTTCGGAAGATGATTC+AGG | + | tig0019143:56180-56199 | Msa1370720:intron | 35.0% | |
| !! | GGAAAGTCTATTGACTTACA+CGG | + | tig0019143:56210-56229 | Msa1370720:intron | 35.0% |
| TTTATTTCGGAAGATGGTTC+AGG | + | tig0019143:56344-56363 | Msa1370720:intron | 35.0% | |
| TCTACCATCATCTTGATACA+AGG | - | tig0019143:56431-56450 | None:intergenic | 35.0% | |
| TGTGTTTCTTGTAACATCAC+TGG | - | tig0019143:56538-56557 | None:intergenic | 35.0% | |
| CTAAGCTTGGATCTAAAGAT+TGG | + | tig0019143:56607-56626 | Msa1370720:intron | 35.0% | |
| TTTGAATCTTGTGAATGGCA+AGG | + | tig0019143:56640-56659 | Msa1370720:intron | 35.0% | |
| TTGAATCTTGTGAATGGCAA+GGG | + | tig0019143:56641-56660 | Msa1370720:intron | 35.0% | |
| TGAATCAATTGCGCATAGAA+TGG | + | tig0019143:56711-56730 | Msa1370720:intron | 35.0% | |
| ! | TTTTCTCCCAACAGATGTTA+AGG | + | tig0019143:56796-56815 | Msa1370720:intron | 35.0% |
| CATCAGATAGAGTTGAAATC+AGG | - | tig0019143:56823-56842 | None:intergenic | 35.0% | |
| CTGATTTCAACTCTATCTGA+TGG | + | tig0019143:56821-56840 | Msa1370720:CDS | 35.0% | |
| CATGGAGAATGTTCCATAAT+TGG | + | tig0019143:56851-56870 | Msa1370720:CDS | 35.0% | |
| ! | TAATTGATGATCGACATGCT+CGG | - | tig0019143:56940-56959 | None:intergenic | 35.0% |
| !! | ATTATGATTGGTGATGCACT+TGG | + | tig0019143:56956-56975 | Msa1370720:CDS | 35.0% |
| TGGAAGAAATGAAATGCAGA+AGG | + | tig0019143:56976-56995 | Msa1370720:CDS | 35.0% | |
| GTGTTATAAAATAAGGCGAG+GGG | - | tig0019143:57029-57048 | None:intergenic | 35.0% | |
| CGTGTTATAAAATAAGGCGA+GGG | - | tig0019143:57030-57049 | None:intergenic | 35.0% | |
| ACGTGTTATAAAATAAGGCG+AGG | - | tig0019143:57031-57050 | None:intergenic | 35.0% | |
| GTTTCAGATACTTGAGCATT+TGG | + | tig0019143:57137-57156 | Msa1370720:intron | 35.0% | |
| ! | TGAACGATTCCTTTTGCGAT+TGG | - | tig0019143:50761-50780 | None:intergenic | 40.0% |
| ATCGTTCACAGAATCTGTTC+CGG | + | tig0019143:50773-50792 | Msa1370720:CDS | 40.0% | |
| TTAAAGACTTCGGCGAAGAA+TGG | + | tig0019143:50882-50901 | Msa1370720:CDS | 40.0% | |
| ! | TGGTTTCAAGTCACCGATAA+CGG | + | tig0019143:50902-50921 | Msa1370720:CDS | 40.0% |
| CATTTCACCAAACAGCTTCA+AGG | + | tig0019143:50931-50950 | Msa1370720:CDS | 40.0% | |
| ! | CTTCAGTCTCTGACTACTTT+TGG | + | tig0019143:51076-51095 | Msa1370720:CDS | 40.0% |
| GTTGAGTTCTCTTTGTGCTT+TGG | + | tig0019143:51114-51133 | Msa1370720:CDS | 40.0% | |
| TGAGTTCTCTTTGTGCTTTG+GGG | + | tig0019143:51116-51135 | Msa1370720:CDS | 40.0% | |
| AACGAGAACAGTGAATGAAC+CGG | + | tig0019143:51153-51172 | Msa1370720:CDS | 40.0% | |
| TAATCATTCCGGTGTTCTTG+TGG | + | tig0019143:51195-51214 | Msa1370720:CDS | 40.0% | |
| ACAAATTGGAACGACTGTGA+CGG | + | tig0019143:51237-51256 | Msa1370720:CDS | 40.0% | |
| ACGTAAGGAATATGGAAAGC+TGG | + | tig0019143:51315-51334 | Msa1370720:CDS | 40.0% | |
| GCATATGCCCTTATAGCAAA+AGG | + | tig0019143:51876-51895 | Msa1370720:CDS | 40.0% | |
| !! | TCGAACGCCTTTTGCTATAA+GGG | - | tig0019143:51886-51905 | None:intergenic | 40.0% |
| !! | ATCGAACGCCTTTTGCTATA+AGG | - | tig0019143:51887-51906 | None:intergenic | 40.0% |
| !! | ATAGCAAAAGGCGTTCGATT+TGG | + | tig0019143:51888-51907 | Msa1370720:CDS | 40.0% |
| TCTGTGGTACTTAAAACCCA+AGG | + | tig0019143:51942-51961 | Msa1370720:CDS | 40.0% | |
| CATGAACACTTTCAACTGCT+TGG | + | tig0019143:52004-52023 | Msa1370720:CDS | 40.0% | |
| ! | TTTTGTAAACGGTAGACCAG+TGG | + | tig0019143:52127-52146 | Msa1370720:CDS | 40.0% |
| CCAGTGGATATGCCAAAAAT+CGG | + | tig0019143:52143-52162 | Msa1370720:CDS | 40.0% | |
| TTATTGCAAGCCCTTAGAGA+GGG | + | tig0019143:52308-52327 | Msa1370720:CDS | 40.0% | |
| TTGTTGTAAGCCCTCTCTAA+GGG | - | tig0019143:52321-52340 | None:intergenic | 40.0% | |
| ! | TTTGTTGTAAGCCCTCTCTA+AGG | - | tig0019143:52322-52341 | None:intergenic | 40.0% |
| !! | ACAGCATAAGAGGCATTATC+AGG | - | tig0019143:52353-52372 | None:intergenic | 40.0% |
| TCAGTATAATGCTCTTCCTG+AGG | - | tig0019143:52482-52501 | None:intergenic | 40.0% | |
| AATAATTCTGACCGCAACAG+TGG | + | tig0019143:52533-52552 | Msa1370720:CDS | 40.0% | |
| GAGATATACTACCACTGTTG+CGG | - | tig0019143:52547-52566 | None:intergenic | 40.0% | |
| CAGAGCGCACAAAACTTTAA+AGG | + | tig0019143:52703-52722 | Msa1370720:CDS | 40.0% | |
| ! | ACTTTAAAGGGTGACAAGAG+TGG | + | tig0019143:52716-52735 | Msa1370720:CDS | 40.0% |
| CTTGTGGAGCTTGATTTCTA+AGG | - | tig0019143:52937-52956 | None:intergenic | 40.0% | |
| ACAGTGAATTTACACTGCTG+TGG | - | tig0019143:53078-53097 | None:intergenic | 40.0% | |
| TACTGACAGAGAACCTAACA+TGG | + | tig0019143:53114-53133 | Msa1370720:CDS | 40.0% | |
| TCTTTCTGCTGTTCAATGTC+TGG | - | tig0019143:53835-53854 | None:intergenic | 40.0% | |
| ! | ACAGCAGAAAGAAAGGGTTT+TGG | + | tig0019143:53843-53862 | Msa1370720:CDS | 40.0% |
| GGAATACTTCAGCAGAATGA+AGG | + | tig0019143:53903-53922 | Msa1370720:CDS | 40.0% | |
| ! | TTGGATGTTGTTGTGCTGAT+TGG | + | tig0019143:53959-53978 | Msa1370720:intron | 40.0% |
| ! | GAAAGTGCAACCAAGTTGTT+AGG | + | tig0019143:54023-54042 | Msa1370720:intron | 40.0% |
| !! | CAGAGGTTGTTGGTTCAATA+TGG | - | tig0019143:54499-54518 | None:intergenic | 40.0% |
| ATAAGTTCTCACCTAAGCAG+AGG | - | tig0019143:54516-54535 | None:intergenic | 40.0% | |
| ! | TTTTTCCCCTCTGAACTTCT+GGG | + | tig0019143:54566-54585 | Msa1370720:intron | 40.0% |
| GGGAACTGTCAATAATCACA+TGG | + | tig0019143:54586-54605 | Msa1370720:intron | 40.0% | |
| TCACATGGTAAAGCTGGAAA+AGG | + | tig0019143:54601-54620 | Msa1370720:intron | 40.0% | |
| GGGGATAACTCCAATCTTAT+TGG | - | tig0019143:54797-54816 | None:intergenic | 40.0% | |
| ! | AGCAACTATTTCTTCCTCAG+GGG | - | tig0019143:54816-54835 | None:intergenic | 40.0% |
| ! | GAAGCAACTATTTCTTCCTC+AGG | - | tig0019143:54818-54837 | None:intergenic | 40.0% |
| TGCAGCATCATTTCAGATAC+TGG | - | tig0019143:55005-55024 | None:intergenic | 40.0% | |
| GTAGTAGGGAAATTCATGAC+TGG | - | tig0019143:55185-55204 | None:intergenic | 40.0% | |
| ! | CATGTCAAGTTTTGCGTAGT+AGG | - | tig0019143:55200-55219 | None:intergenic | 40.0% |
| TGACAGCTGTGTCAATTCAA+TGG | + | tig0019143:55227-55246 | Msa1370720:intron | 40.0% | |
| AATTTATAACGGCATCCAGG+TGG | - | tig0019143:55964-55983 | None:intergenic | 40.0% | |
| ! | GCACACAATATGTTTTCCCT+TGG | - | tig0019143:56106-56125 | None:intergenic | 40.0% |
| AGTCAATAGACTTTCCAGCT+TGG | - | tig0019143:56206-56225 | None:intergenic | 40.0% | |
| !! | TCTATTGACTTACACGGCTT+TGG | + | tig0019143:56216-56235 | Msa1370720:intron | 40.0% |
| !! | TAAACCCTTGGTTCTAAGCT+TGG | + | tig0019143:56594-56613 | Msa1370720:intron | 40.0% |
| AGATCCAAGCTTAGAACCAA+GGG | - | tig0019143:56601-56620 | None:intergenic | 40.0% | |
| TAGATCCAAGCTTAGAACCA+AGG | - | tig0019143:56602-56621 | None:intergenic | 40.0% | |
| TCAGGTCCTTAACATCTGTT+GGG | - | tig0019143:56805-56824 | None:intergenic | 40.0% | |
| ATCAGGTCCTTAACATCTGT+TGG | - | tig0019143:56806-56825 | None:intergenic | 40.0% | |
| ! | TCAACTCTATCTGATGGTGA+TGG | + | tig0019143:56827-56846 | Msa1370720:CDS | 40.0% |
| ! | AATTGATGATCGACATGCTC+GGG | - | tig0019143:56939-56958 | None:intergenic | 40.0% |
| TGCACACCTTTACAAGTATC+TGG | + | tig0019143:57050-57069 | Msa1370720:intron | 40.0% | |
| GAGGTCAGAATTAACAATGC+AGG | + | tig0019143:57239-57258 | Msa1370720:CDS | 40.0% | |
| TTCGACGAGTTCTTTAACGG+CGG | - | tig0019143:50822-50841 | None:intergenic | 45.0% | |
| GTCGAAAATAGCTTAGACGC+CGG | + | tig0019143:50836-50855 | Msa1370720:CDS | 45.0% | |
| AAGAGAGATTTCGATGCTGG+TGG | - | tig0019143:50864-50883 | None:intergenic | 45.0% | |
| TGAAATGCCGCAACCGTTAT+CGG | - | tig0019143:50918-50937 | None:intergenic | 45.0% | |
| AACGTCAAATGCGTTGCAAC+CGG | - | tig0019143:51175-51194 | None:intergenic | 45.0% | |
| CTTTCTGTTGGGTACTCTTC+AGG | + | tig0019143:51854-51873 | Msa1370720:intron | 45.0% | |
| TCTGAGAGCTGCAAAGTTGA+TGG | + | tig0019143:52047-52066 | Msa1370720:CDS | 45.0% | |
| ! | GATGGTTTTCTTTCCAAGCC+TGG | + | tig0019143:52065-52084 | Msa1370720:CDS | 45.0% |
| ! | TTTTCTTTCCAAGCCTGGAC+TGG | + | tig0019143:52070-52089 | Msa1370720:CDS | 45.0% |
| TTTCTTTCCAAGCCTGGACT+GGG | + | tig0019143:52071-52090 | Msa1370720:CDS | 45.0% | |
| !! | ACTGGGTAACGGAAGGAATT+TGG | + | tig0019143:52088-52107 | Msa1370720:CDS | 45.0% |
| !! | CTGGGTAACGGAAGGAATTT+GGG | + | tig0019143:52089-52108 | Msa1370720:CDS | 45.0% |
| !!! | CCGATTTTTGGCATATCCAC+TGG | - | tig0019143:52146-52165 | None:intergenic | 45.0% |
| ! | CTCTCTAAGGGCTTGCAATA+AGG | - | tig0019143:52309-52328 | None:intergenic | 45.0% |
| CTTATTGCAAGCCCTTAGAG+AGG | + | tig0019143:52307-52326 | Msa1370720:CDS | 45.0% | |
| ! | AAACAGTCTTCTTTTGCGGC+AGG | - | tig0019143:52392-52411 | None:intergenic | 45.0% |
| GTCTCCTATCGTAACGAAAC+CGG | + | tig0019143:52436-52455 | Msa1370720:CDS | 45.0% | |
| TCTCAAGGACAGTTGTGAGT+GGG | + | tig0019143:52789-52808 | Msa1370720:CDS | 45.0% | |
| AAGGACAGGCACTTCAGATA+AGG | - | tig0019143:52918-52937 | None:intergenic | 45.0% | |
| ! | GGAGCTTGATTTCTAAGGAC+AGG | - | tig0019143:52932-52951 | None:intergenic | 45.0% |
| TTGCAGCAACGTAATCCTGA+TGG | + | tig0019143:53046-53065 | Msa1370720:CDS | 45.0% | |
| GAGAACCTAACATGGTACGT+TGG | + | tig0019143:53122-53141 | Msa1370720:intron | 45.0% | |
| GCAAACCAACGTACCATGTT+AGG | - | tig0019143:53130-53149 | None:intergenic | 45.0% | |
| CAGTCAAGGATTCCGAAGAT+TGG | + | tig0019143:53149-53168 | Msa1370720:intron | 45.0% | |
| !! | TAGTAACGGGTTAGCCACTA+AGG | - | tig0019143:53332-53351 | None:intergenic | 45.0% |
| CAGGCGATGAACAAATTGGA+GGG | - | tig0019143:53559-53578 | None:intergenic | 45.0% | |
| TTGGGAGAATCTAATCGTGC+AGG | - | tig0019143:53578-53597 | None:intergenic | 45.0% | |
| TTAGATTCTCCCAAGTCCTC+TGG | + | tig0019143:53584-53603 | Msa1370720:CDS | 45.0% | |
| ATCTTCTGACCAGAGGACTT+GGG | - | tig0019143:53596-53615 | None:intergenic | 45.0% | |
| TATCTTCTGACCAGAGGACT+TGG | - | tig0019143:53597-53616 | None:intergenic | 45.0% | |
| GGAGAATATCTTCTGACCAG+AGG | - | tig0019143:53603-53622 | None:intergenic | 45.0% | |
| GAACAATCTTTCCAGTTCGG+TGG | - | tig0019143:53878-53897 | None:intergenic | 45.0% | |
| TGAACCAACAACCTCTGCTT+AGG | + | tig0019143:54502-54521 | Msa1370720:CDS | 45.0% | |
| CAGAAGTTCAGAGGGGAAAA+AGG | - | tig0019143:54567-54586 | None:intergenic | 45.0% | |
| ! | CTTTTTCCCCTCTGAACTTC+TGG | + | tig0019143:54565-54584 | Msa1370720:intron | 45.0% |
| ACAGTTCCCAGAAGTTCAGA+GGG | - | tig0019143:54575-54594 | None:intergenic | 45.0% | |
| AAGATTGGAGTTATCCCCTG+AGG | + | tig0019143:54799-54818 | Msa1370720:CDS | 45.0% | |
| !! | TTTCTAAGGCTGATCATCCG+TGG | - | tig0019143:55091-55110 | None:intergenic | 45.0% |
| GTTGACAAAGCTTGAGCGAT+AGG | + | tig0019143:55552-55571 | Msa1370720:intron | 45.0% | |
| ! | AACACCATGTTTGGAGTCGA+AGG | + | tig0019143:56006-56025 | Msa1370720:CDS | 45.0% |
| TCTACCTTCGACTCCAAACA+TGG | - | tig0019143:56013-56032 | None:intergenic | 45.0% | |
| ! | GGAAGTCTAGCTGACTTACA+CGG | + | tig0019143:56374-56393 | Msa1370720:intron | 45.0% |
| !! | CTATCTGATGGTGATGGTCA+TGG | + | tig0019143:56833-56852 | Msa1370720:CDS | 45.0% |
| ACATTGCACGAACTCTTGGA+GGG | - | tig0019143:56910-56929 | None:intergenic | 45.0% | |
| AACATTGCACGAACTCTTGG+AGG | - | tig0019143:56911-56930 | None:intergenic | 45.0% | |
| TCCAAGAGTTCGTGCAATGT+TGG | + | tig0019143:56910-56929 | Msa1370720:CDS | 45.0% | |
| TCACCATGGAATTGTCCTCA+TGG | + | tig0019143:57171-57190 | Msa1370720:CDS | 45.0% | |
| TCAACTAAATGCCGCATGGT+TGG | - | tig0019143:57201-57220 | None:intergenic | 45.0% | |
| CAAGTCAACTAAATGCCGCA+TGG | - | tig0019143:57205-57224 | None:intergenic | 45.0% | |
| !!! | CATATTTTTTTTTATTAAAT+TGG | + | tig0019143:53940-53959 | Msa1370720:intron | 5.0% |
| ! | CAAGTCACCGATAACGGTTG+CGG | + | tig0019143:50908-50927 | Msa1370720:CDS | 50.0% |
| TCATTCCGGTGTTCTTGTGG+CGG | + | tig0019143:51198-51217 | Msa1370720:CDS | 50.0% | |
| ! | CTTTTCCGCCACAAGAACAC+CGG | - | tig0019143:51206-51225 | None:intergenic | 50.0% |
| TTTGGCTGCACGAACACAAC+TGG | + | tig0019143:51906-51925 | Msa1370720:CDS | 50.0% | |
| !! | GATGCCGGTTTCGTTACGAT+AGG | - | tig0019143:52443-52462 | None:intergenic | 50.0% |
| CTGAGGAATCGCCACATTCA+GGG | - | tig0019143:52465-52484 | None:intergenic | 50.0% | |
| !! | GAAGGGTTGATTCGTGAGAG+TGG | + | tig0019143:52650-52669 | Msa1370720:CDS | 50.0% |
| !! | GGTTGATTCGTGAGAGTGGT+GGG | + | tig0019143:52654-52673 | Msa1370720:CDS | 50.0% |
| !! | GTTGATTCGTGAGAGTGGTG+GGG | + | tig0019143:52655-52674 | Msa1370720:CDS | 50.0% |
| ! | TTGATTCGTGAGAGTGGTGG+GGG | + | tig0019143:52656-52675 | Msa1370720:CDS | 50.0% |
| ! | TGAGAGTGGTGGGGGTTTAA+TGG | + | tig0019143:52664-52683 | Msa1370720:CDS | 50.0% |
| ! | GAGAGTGGTGGGGGTTTAAT+GGG | + | tig0019143:52665-52684 | Msa1370720:CDS | 50.0% |
| TTTGCGCAATCAAGCTACCC+TGG | + | tig0019143:52766-52785 | Msa1370720:CDS | 50.0% | |
| ATCAAGCTACCCTGGTCTCA+AGG | + | tig0019143:52774-52793 | Msa1370720:CDS | 50.0% | |
| CACAACTGTCCTTGAGACCA+GGG | - | tig0019143:52786-52805 | None:intergenic | 50.0% | |
| TCACAACTGTCCTTGAGACC+AGG | - | tig0019143:52787-52806 | None:intergenic | 50.0% | |
| GTCTCAAGGACAGTTGTGAG+TGG | + | tig0019143:52788-52807 | Msa1370720:CDS | 50.0% | |
| CTCAAGGACAGTTGTGAGTG+GGG | + | tig0019143:52790-52809 | Msa1370720:CDS | 50.0% | |
| TCAAGGACAGTTGTGAGTGG+GGG | + | tig0019143:52791-52810 | Msa1370720:CDS | 50.0% | |
| !! | GGTACGTTGGTTTGCAGTCA+AGG | + | tig0019143:53135-53154 | Msa1370720:intron | 50.0% |
| GCAGGCGATGAACAAATTGG+AGG | - | tig0019143:53560-53579 | None:intergenic | 50.0% | |
| CGTGCAGGCGATGAACAAAT+TGG | - | tig0019143:53563-53582 | None:intergenic | 50.0% | |
| TCACTATACGGCTGCAACTC+TGG | + | tig0019143:53798-53817 | Msa1370720:CDS | 50.0% | |
| CTCACCTAAGCAGAGGTTGT+TGG | - | tig0019143:54509-54528 | None:intergenic | 50.0% | |
| CAGTTCCCAGAAGTTCAGAG+GGG | - | tig0019143:54574-54593 | None:intergenic | 50.0% | |
| GACAGTTCCCAGAAGTTCAG+AGG | - | tig0019143:54576-54595 | None:intergenic | 50.0% | |
| ! | TAGTGAGTTGCCACTTGCCA+CGG | + | tig0019143:55071-55090 | Msa1370720:intron | 50.0% |
| GAGGATCTAAATGCACCACC+TGG | + | tig0019143:55946-55965 | Msa1370720:CDS | 50.0% | |
| GAAGATGATTCAGGCCAAGC+TGG | + | tig0019143:56189-56208 | Msa1370720:intron | 50.0% | |
| ! | CTAGCTGACTTACACGGCTT+TGG | + | tig0019143:56380-56399 | Msa1370720:intron | 50.0% |
| GCCAACATTGCACGAACTCT+TGG | - | tig0019143:56914-56933 | None:intergenic | 50.0% | |
| TGGCAGAGCTGAAATCACCA+TGG | + | tig0019143:57157-57176 | Msa1370720:CDS | 50.0% | |
| CTGCCATGAGGACAATTCCA+TGG | - | tig0019143:57177-57196 | None:intergenic | 50.0% | |
| CATGGAATTGTCCTCATGGC+AGG | + | tig0019143:57175-57194 | Msa1370720:CDS | 50.0% | |
| GAGGTCGAGGATGACTTGAC+CGG | - | tig0019143:50795-50814 | None:intergenic | 55.0% | |
| GTTCTTTAACGGCGGAGGAG+AGG | - | tig0019143:50814-50833 | None:intergenic | 55.0% | |
| GACGAGTTCTTTAACGGCGG+AGG | - | tig0019143:50819-50838 | None:intergenic | 55.0% | |
| ! | TCCAAGCCTGGACTGGGTAA+CGG | + | tig0019143:52077-52096 | Msa1370720:CDS | 55.0% |
| TTCCTTCCGTTACCCAGTCC+AGG | - | tig0019143:52086-52105 | None:intergenic | 55.0% | |
| GAAACCGGCATCCCTGAATG+TGG | + | tig0019143:52451-52470 | Msa1370720:CDS | 55.0% | |
| ATCGCCACATTCAGGGATGC+CGG | - | tig0019143:52458-52477 | None:intergenic | 55.0% | |
| CCTGAGGAATCGCCACATTC+AGG | - | tig0019143:52466-52485 | None:intergenic | 55.0% | |
| CCTGAATGTGGCGATTCCTC+AGG | + | tig0019143:52463-52482 | Msa1370720:CDS | 55.0% | |
| !! | GGGTTGATTCGTGAGAGTGG+TGG | + | tig0019143:52653-52672 | Msa1370720:CDS | 55.0% |
| ! | TGGTGGGGGTTTAATGGGCA+AGG | + | tig0019143:52670-52689 | Msa1370720:CDS | 55.0% |
| ! | CTGCTGTGGTTGATGCCATC+AGG | - | tig0019143:53064-53083 | None:intergenic | 55.0% |
| TTCGGAAGATGGTTCAGGCC+AGG | + | tig0019143:56349-56368 | Msa1370720:intron | 55.0% | |
| AGTCAGCTAGACTTCCAGCC+TGG | - | tig0019143:56370-56389 | None:intergenic | 55.0% | |
| TGGAGGGCAGACTGAATCTG+AGG | - | tig0019143:56894-56913 | None:intergenic | 55.0% | |
| ! | GATTTCGATGCTGGTGGCGC+CGG | - | tig0019143:50858-50877 | None:intergenic | 60.0% |
| TCCGTTACCCAGTCCAGGCT+TGG | - | tig0019143:52081-52100 | None:intergenic | 60.0% | |
| !! | AGCCTGGACTGGGTAACGGA+AGG | + | tig0019143:52081-52100 | Msa1370720:CDS | 60.0% |
| GGCTGATCATCCGTGGCAAG+TGG | - | tig0019143:55084-55103 | None:intergenic | 60.0% | |
| GAAGATGGTTCAGGCCAGGC+TGG | + | tig0019143:56353-56372 | Msa1370720:intron | 60.0% | |
| CTCATGGCAGGCCAACCATG+CGG | + | tig0019143:57187-57206 | Msa1370720:CDS | 60.0% | |
| TAACGGCGGAGGAGAGGTCG+AGG | - | tig0019143:50808-50827 | None:intergenic | 65.0% | |
| !! | CGCATGGTTGGCCTGCCATG+AGG | - | tig0019143:57189-57208 | None:intergenic | 65.0% |
| GGCAGCAGCAGCCACCGAAC+TGG | + | tig0019143:53864-53883 | Msa1370720:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019143 | gene | 50722 | 57431 | 50722 | ID=Msa1370720;Name=Msa1370720 |
| tig0019143 | mRNA | 50722 | 57431 | 50722 | ID=Msa1370720-mRNA-1;Parent=Msa1370720;Name=Msa1370720-mRNA-1;_AED=0.05;_eAED=0.05;_QI=9|0.9|0.90|1|1|1|11|165|941 |
| tig0019143 | exon | 50722 | 50952 | 50722 | ID=Msa1370720-mRNA-1:exon:1808;Parent=Msa1370720-mRNA-1 |
| tig0019143 | exon | 51028 | 51351 | 51028 | ID=Msa1370720-mRNA-1:exon:1809;Parent=Msa1370720-mRNA-1 |
| tig0019143 | exon | 51876 | 53135 | 51876 | ID=Msa1370720-mRNA-1:exon:1810;Parent=Msa1370720-mRNA-1 |
| tig0019143 | exon | 53455 | 53723 | 53455 | ID=Msa1370720-mRNA-1:exon:1811;Parent=Msa1370720-mRNA-1 |
| tig0019143 | exon | 53798 | 53924 | 53798 | ID=Msa1370720-mRNA-1:exon:1812;Parent=Msa1370720-mRNA-1 |
| tig0019143 | exon | 54229 | 54297 | 54229 | ID=Msa1370720-mRNA-1:exon:1813;Parent=Msa1370720-mRNA-1 |
| tig0019143 | exon | 54450 | 54523 | 54450 | ID=Msa1370720-mRNA-1:exon:1814;Parent=Msa1370720-mRNA-1 |
| tig0019143 | exon | 54793 | 54858 | 54793 | ID=Msa1370720-mRNA-1:exon:1815;Parent=Msa1370720-mRNA-1 |
| tig0019143 | exon | 55924 | 56027 | 55924 | ID=Msa1370720-mRNA-1:exon:1816;Parent=Msa1370720-mRNA-1 |
| tig0019143 | exon | 56810 | 56997 | 56810 | ID=Msa1370720-mRNA-1:exon:1817;Parent=Msa1370720-mRNA-1 |
| tig0019143 | exon | 57144 | 57431 | 57144 | ID=Msa1370720-mRNA-1:exon:1818;Parent=Msa1370720-mRNA-1 |
| tig0019143 | five_prime_UTR | 50722 | 50730 | 50722 | ID=Msa1370720-mRNA-1:five_prime_utr;Parent=Msa1370720-mRNA-1 |
| tig0019143 | CDS | 50731 | 50952 | 50731 | ID=Msa1370720-mRNA-1:cds;Parent=Msa1370720-mRNA-1 |
| tig0019143 | CDS | 51028 | 51351 | 51028 | ID=Msa1370720-mRNA-1:cds;Parent=Msa1370720-mRNA-1 |
| tig0019143 | CDS | 51876 | 53135 | 51876 | ID=Msa1370720-mRNA-1:cds;Parent=Msa1370720-mRNA-1 |
| tig0019143 | CDS | 53455 | 53723 | 53455 | ID=Msa1370720-mRNA-1:cds;Parent=Msa1370720-mRNA-1 |
| tig0019143 | CDS | 53798 | 53924 | 53798 | ID=Msa1370720-mRNA-1:cds;Parent=Msa1370720-mRNA-1 |
| tig0019143 | CDS | 54229 | 54297 | 54229 | ID=Msa1370720-mRNA-1:cds;Parent=Msa1370720-mRNA-1 |
| tig0019143 | CDS | 54450 | 54523 | 54450 | ID=Msa1370720-mRNA-1:cds;Parent=Msa1370720-mRNA-1 |
| tig0019143 | CDS | 54793 | 54858 | 54793 | ID=Msa1370720-mRNA-1:cds;Parent=Msa1370720-mRNA-1 |
| tig0019143 | CDS | 55924 | 56027 | 55924 | ID=Msa1370720-mRNA-1:cds;Parent=Msa1370720-mRNA-1 |
| tig0019143 | CDS | 56810 | 56997 | 56810 | ID=Msa1370720-mRNA-1:cds;Parent=Msa1370720-mRNA-1 |
| tig0019143 | CDS | 57144 | 57266 | 57144 | ID=Msa1370720-mRNA-1:cds;Parent=Msa1370720-mRNA-1 |
| tig0019143 | three_prime_UTR | 57267 | 57431 | 57267 | ID=Msa1370720-mRNA-1:three_prime_utr;Parent=Msa1370720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
