AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0108350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108350 MtrunA17_Chr1g0165011 93.137 306 7 2 1 293 1 305 0.0 577
Msa0108350 MtrunA17_Chr8g0375751 66.084 286 78 4 9 293 7 274 1.30e-126 367
Msa0108350 MtrunA17_Chr6g0479511 46.429 280 110 3 40 293 15 280 4.67e-80 247
Msa0108350 MtrunA17_Chr7g0263111 40.134 299 130 8 10 284 11 284 3.70e-58 192
Msa0108350 MtrunA17_Chr6g0452181 42.339 248 123 7 61 293 53 295 4.96e-53 179
Msa0108350 MtrunA17_Chr8g0382571 57.937 126 50 1 171 293 219 344 6.94e-41 147
Msa0108350 MtrunA17_Chr8g0382571 48.780 82 41 1 53 134 28 108 1.45e-17 82.4
Msa0108350 MtrunA17_Chr5g0394901 55.556 126 53 1 171 293 360 485 2.13e-40 148
Msa0108350 MtrunA17_Chr5g0394901 54.667 75 33 1 60 134 90 163 2.91e-18 84.7
Msa0108350 MtrunA17_Chr1g0185281 55.556 126 53 1 171 293 294 419 3.21e-40 147
Msa0108350 MtrunA17_Chr1g0185281 36.025 161 67 4 4 134 7 161 2.46e-19 87.8
Msa0108350 MtrunA17_Chr1g0205121 54.762 126 54 1 171 293 321 446 8.93e-40 146
Msa0108350 MtrunA17_Chr1g0205121 40.984 122 59 4 22 134 44 161 2.14e-19 88.2
Msa0108350 MtrunA17_Chr6g0466801 60.000 115 46 0 171 285 375 489 3.56e-39 145
Msa0108350 MtrunA17_Chr6g0466801 40.367 109 54 3 60 158 94 201 4.59e-17 81.3
Msa0108350 MtrunA17_Chr1g0201271 54.472 123 56 0 171 293 377 499 3.69e-39 145
Msa0108350 MtrunA17_Chr1g0201271 37.705 122 65 4 20 135 56 172 4.30e-15 75.5
Msa0108350 MtrunA17_Chr7g0260081 53.968 126 55 1 171 293 294 419 2.82e-38 141
Msa0108350 MtrunA17_Chr7g0260081 36.538 156 74 4 3 134 7 161 1.07e-19 89.0
Msa0108350 MtrunA17_Chr8g0355021 53.175 126 56 1 171 293 233 358 1.30e-37 139
Msa0108350 MtrunA17_Chr8g0355021 45.238 84 45 1 51 134 49 131 1.09e-15 77.0
Msa0108350 MtrunA17_Chr4g0054941 51.220 123 60 0 171 293 316 438 3.09e-34 130
Msa0108350 MtrunA17_Chr4g0054941 38.000 150 76 3 1 137 1 146 1.85e-20 91.3
Msa0108350 MtrunA17_Chr4g0054951 51.240 121 59 0 171 291 316 436 6.87e-34 129
Msa0108350 MtrunA17_Chr4g0054951 36.054 147 78 3 4 138 7 149 8.15e-18 83.6
Msa0108350 MtrunA17_Chr5g0400311 49.593 123 62 0 171 293 373 495 4.69e-31 122
Msa0108350 MtrunA17_Chr5g0400311 31.034 174 80 4 4 138 7 179 3.29e-17 81.6
Msa0108350 MtrunA17_Chr1g0189231 22.867 293 152 11 24 283 494 745 3.29e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108350 AT2G01900.3 61.695 295 104 2 1 293 1 288 9.97e-124 360
Msa0108350 AT2G01900.2 62.718 287 98 2 9 293 1 280 5.85e-123 357
Msa0108350 AT2G01900.1 62.718 287 98 2 9 293 1 280 6.96e-123 358
Msa0108350 AT2G37440.1 44.805 308 138 6 6 283 7 312 3.28e-74 235
Msa0108350 AT2G37440.3 44.805 308 138 6 6 283 7 312 3.28e-74 235
Msa0108350 AT2G37440.2 49.587 242 87 6 66 283 1 231 5.70e-64 206
Msa0108350 AT5G65090.2 57.937 126 50 1 171 293 205 330 1.71e-41 149
Msa0108350 AT5G65090.2 48.052 77 39 1 59 135 5 80 3.09e-16 79.0
Msa0108350 AT5G65090.3 57.937 126 50 1 171 293 268 393 3.74e-41 149
Msa0108350 AT5G65090.3 44.318 88 48 1 48 135 57 143 3.71e-16 79.0
Msa0108350 AT5G65090.1 57.937 126 50 1 171 293 268 393 3.74e-41 149
Msa0108350 AT5G65090.1 44.318 88 48 1 48 135 57 143 3.71e-16 79.0
Msa0108350 AT2G32010.2 55.556 126 53 1 171 293 332 457 2.06e-40 148
Msa0108350 AT2G32010.2 54.667 75 33 1 60 134 87 160 5.56e-20 90.1
Msa0108350 AT2G32010.1 55.556 126 53 1 171 293 332 457 2.06e-40 148
Msa0108350 AT2G32010.1 54.667 75 33 1 60 134 87 160 5.56e-20 90.1
Msa0108350 AT2G32010.4 55.556 126 53 1 171 293 332 457 2.06e-40 148
Msa0108350 AT2G32010.4 54.667 75 33 1 60 134 87 160 5.56e-20 90.1
Msa0108350 AT2G32010.3 55.556 126 53 1 171 293 332 457 2.06e-40 148
Msa0108350 AT2G32010.3 54.667 75 33 1 60 134 87 160 5.56e-20 90.1
Msa0108350 AT1G05470.2 54.762 126 54 1 171 293 355 480 2.77e-40 148
Msa0108350 AT1G05470.2 54.545 77 34 1 60 136 88 163 4.21e-20 90.5
Msa0108350 AT1G05470.1 54.762 126 54 1 171 293 355 480 2.77e-40 148
Msa0108350 AT1G05470.1 54.545 77 34 1 60 136 88 163 4.21e-20 90.5
Msa0108350 AT3G63240.2 55.556 126 53 1 171 293 284 409 1.39e-38 142
Msa0108350 AT3G63240.2 58.571 70 28 1 65 134 89 157 4.32e-18 84.7
Msa0108350 AT3G63240.1 55.556 126 53 1 171 293 284 409 1.39e-38 142
Msa0108350 AT3G63240.1 58.571 70 28 1 65 134 89 157 4.32e-18 84.7
Msa0108350 AT1G34120.5 52.800 125 57 2 171 293 188 312 2.88e-36 134
Msa0108350 AT1G34120.4 52.800 125 57 2 171 293 339 463 6.44e-36 134
Msa0108350 AT1G34120.4 47.368 76 39 1 60 135 97 171 4.62e-16 78.6
Msa0108350 AT5G04980.4 51.587 126 58 1 171 293 163 288 7.76e-36 133
Msa0108350 AT1G34120.1 52.800 125 57 2 171 293 339 463 1.76e-35 134
Msa0108350 AT1G34120.1 47.368 76 39 1 60 135 97 171 4.93e-16 78.6
Msa0108350 AT5G04980.1 51.587 126 58 1 171 293 198 323 1.92e-35 132
Msa0108350 AT5G04980.1 54.412 68 30 1 62 129 7 73 5.67e-16 78.2
Msa0108350 AT5G04980.3 51.587 126 58 1 171 293 198 323 1.92e-35 132
Msa0108350 AT5G04980.3 54.412 68 30 1 62 129 7 73 5.67e-16 78.2
Msa0108350 AT1G34120.2 52.800 125 57 2 171 293 343 467 2.04e-35 134
Msa0108350 AT1G34120.2 47.368 76 39 1 60 135 101 175 5.64e-16 78.6
Msa0108350 AT5G04980.2 51.587 126 58 1 171 293 227 352 2.16e-35 133
Msa0108350 AT5G04980.2 46.809 94 42 3 36 129 17 102 2.51e-16 79.3
Msa0108350 AT1G34120.3 52.800 125 56 3 171 293 343 466 1.01e-33 129
Msa0108350 AT1G34120.3 47.368 76 39 1 60 135 101 175 5.43e-16 78.6
Msa0108350 AT1G71710.2 49.593 123 62 0 171 293 405 527 2.81e-33 129
Msa0108350 AT1G71710.2 42.574 101 53 2 35 135 94 189 7.02e-18 84.0
Msa0108350 AT1G71710.1 49.593 123 62 0 171 293 414 536 2.90e-33 129
Msa0108350 AT1G71710.1 42.574 101 53 2 35 135 103 198 6.56e-18 84.3
Msa0108350 AT4G18010.2 48.780 123 63 0 171 293 395 517 1.73e-32 126
Msa0108350 AT4G18010.2 34.091 176 71 4 4 135 7 181 4.37e-18 84.7
Msa0108350 AT4G18010.1 48.780 123 63 0 171 293 395 517 3.46e-32 125
Msa0108350 AT4G18010.1 34.091 176 71 4 4 135 7 181 4.37e-18 84.7
Msa0108350 AT1G65580.2 26.255 259 129 8 58 283 266 495 5.63e-15 75.5
Msa0108350 AT1G65580.1 26.255 259 129 8 58 283 532 761 6.00e-15 75.5
Msa0108350 AT1G05630.3 22.789 294 156 9 24 283 538 794 4.93e-12 66.6
Msa0108350 AT1G05630.2 22.789 294 156 9 24 283 538 794 4.98e-12 67.0
Msa0108350 AT1G05630.1 24.291 247 142 8 24 262 538 747 9.01e-12 66.2

Find 51 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTGATATCTATGTATT+TGG 0.059903 1_3:-19727449 Msa0108350:CDS
TGTATCACTATGATCATTAA+TGG 0.163498 1_3:+19727720 None:intergenic
AAGTTCTACAGATCCTTTAT+TGG 0.258601 1_3:-19727782 Msa0108350:CDS
TCATGATCAAGAATCTTTCT+TGG 0.273995 1_3:+19725965 None:intergenic
AGATAATTGATCATCATTAT+TGG 0.274282 1_3:+19727756 None:intergenic
ACTATGATCATTAATGGATT+TGG 0.307634 1_3:+19727726 None:intergenic
TGTGGCATCATGGGCTTCTT+AGG 0.310282 1_3:-19726765 Msa0108350:CDS
GTGTGCAGTCATCTAGCTTC+TGG 0.323109 1_3:-19726079 Msa0108350:CDS
ATAGTAAGATTTCAACAAAA+TGG 0.329956 1_3:-19727049 Msa0108350:CDS
AATACATTTGATGCATTTAG+TGG 0.341530 1_3:+19727083 None:intergenic
CCTTTGATATCTATGTATTT+GGG 0.345233 1_3:-19727448 Msa0108350:intron
ACTAAATGCATCAAATGTAT+TGG 0.366321 1_3:-19727081 Msa0108350:CDS
AAATTCAAAATAGTGCCTTT+AGG 0.373732 1_3:+19725989 None:intergenic
GGTTATGTGGCCTGCATTAG+TGG 0.381333 1_3:-19727860 Msa0108350:CDS
AGTAAGCGTGTGGTTTCTTC+CGG 0.381724 1_3:+19725157 None:intergenic
TCATTATTGGTAGCCAATAA+AGG 0.390562 1_3:+19727769 None:intergenic
CTAAATGCATCAAATGTATT+GGG 0.392848 1_3:-19727080 Msa0108350:CDS
TCATATTTGTTTAGGTTATG+TGG 0.397995 1_3:-19727873 Msa0108350:intron
AAATTACAGAATATCTCTTC+CGG 0.427972 1_3:-19725176 Msa0108350:CDS
TCAATATTCAACCCTTCATC+TGG 0.430166 1_3:+19727497 None:intergenic
ATGTGTTGGATGTGGCATCA+TGG 0.454248 1_3:-19726775 Msa0108350:CDS
GCTGATTTACACTGCTGAGC+TGG 0.467900 1_3:+19726903 None:intergenic
TTGTATCATTAGCAAGCAAA+TGG 0.470095 1_3:-19726865 Msa0108350:intron
TGCAGTCATGTAATATTGCT+TGG 0.474593 1_3:-19725205 Msa0108350:intron
TTAGAAATGCTTTGAACAAG+AGG 0.475137 1_3:-19727016 Msa0108350:CDS
CTAGCTTCTGGAGGAAAAGA+AGG 0.476817 1_3:-19726067 Msa0108350:CDS
TGGCTAACAAGATACTAAAC+AGG 0.478415 1_3:-19727840 Msa0108350:CDS
TTTGTTAGTACATGGAACAT+AGG 0.487262 1_3:-19727530 Msa0108350:CDS
AATAAAGGATCTGTAGAACT+TGG 0.492368 1_3:+19727784 None:intergenic
ATTGTTGCAAAGATATTGAA+AGG 0.497320 1_3:-19726983 Msa0108350:CDS
TGTGTTGGATGTGGCATCAT+GGG 0.501040 1_3:-19726774 Msa0108350:CDS
ATCTTGTTAGCCACTAATGC+AGG 0.504357 1_3:+19727850 None:intergenic
AAGATACTAAACAGGAAACT+TGG 0.508569 1_3:-19727832 Msa0108350:CDS
AGATGAAGGGTTGAATATTG+AGG 0.512538 1_3:-19727495 Msa0108350:CDS
GGTGGAATTGCACCAGATGA+AGG 0.513447 1_3:-19727509 Msa0108350:CDS
AAGAAGGAGATGAGAAGCAT+AGG 0.520647 1_3:-19726051 Msa0108350:CDS
GATGTCTAATGAAAGGACTA+AGG 0.530564 1_3:+19726808 None:intergenic
ATCATTAGCAAGCAAATGGT+TGG 0.540433 1_3:-19726861 Msa0108350:intron
CATCCATGTGTCTCATGTGT+TGG 0.554145 1_3:-19726789 Msa0108350:CDS
TGGTATATTGATATCTGTGT+GGG 0.555762 1_3:-19726841 Msa0108350:CDS
TGTGTCTCATGTGTTGGATG+TGG 0.571735 1_3:-19726783 Msa0108350:CDS
CATGGGCTTCTTAGGCAACA+AGG 0.587041 1_3:-19726757 Msa0108350:intron
CCCAAATACATAGATATCAA+AGG 0.590421 1_3:+19727448 None:intergenic
TTGTTGCAAAGATATTGAAA+GGG 0.593223 1_3:-19726982 Msa0108350:CDS
GTTAGTACATGGAACATAGG+TGG 0.598161 1_3:-19727527 Msa0108350:CDS
TTGGTATATTGATATCTGTG+TGG 0.601371 1_3:-19726842 Msa0108350:CDS
ACACATGGATGTCTAATGAA+AGG 0.608846 1_3:+19726801 None:intergenic
GTGGAATTGCACCAGATGAA+GGG 0.609719 1_3:-19727508 Msa0108350:CDS
CATCCAACACATGAGACACA+TGG 0.611478 1_3:+19726786 None:intergenic
GATTTGAAGAATATTTGTCA+AGG 0.612327 1_3:-19726933 Msa0108350:CDS
TGCAGTCATCTAGCTTCTGG+AGG 0.612853 1_3:-19726076 Msa0108350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTATCAACAAAT+TGG + chr1_3:19725233-19725252 None:intergenic 10.0%
!! TATATTTATCATATTTGTTT+AGG - chr1_3:19725276-19725295 Msa0108350:intron 10.0%
!! AAAAATTAAATTTCTTACCA+AGG - chr1_3:19725248-19725267 Msa0108350:intron 15.0%
!! AAAATTAAATTTCTTACCAA+GGG - chr1_3:19725249-19725268 Msa0108350:intron 15.0%
!! GAAATAGAAACATTAAAAAA+TGG - chr1_3:19725767-19725786 Msa0108350:intron 15.0%
!!! AATTAATCTTTTTACAATCT+AGG - chr1_3:19726036-19726055 Msa0108350:CDS 15.0%
!! ATACATTTGATTAATCTAAT+TGG + chr1_3:19726551-19726570 None:intergenic 15.0%
!! ATGTCAAAATTGTTATATTT+AGG - chr1_3:19726646-19726665 Msa0108350:intron 15.0%
!! TTCAATTTAAGCATTATTAT+TGG - chr1_3:19727416-19727435 Msa0108350:intron 15.0%
!!! ATGATAGTATAGTTTAATTT+TGG + chr1_3:19727483-19727502 None:intergenic 15.0%
!! AGATAATTGATCATCATTAT+TGG + chr1_3:19725404-19725423 None:intergenic 20.0%
!! ATAAAATTATTGCATGATGA+TGG + chr1_3:19725487-19725506 None:intergenic 20.0%
!! GAAAAAATTATCACTATGTT+TGG - chr1_3:19725869-19725888 Msa0108350:intron 20.0%
!!! TTTTTTTCGTCTCAAAATTT+TGG - chr1_3:19725926-19725945 Msa0108350:intron 20.0%
!! ATCTAAACCACATATATATA+TGG + chr1_3:19726001-19726020 None:intergenic 20.0%
!! ATAGTAAGATTTCAACAAAA+TGG - chr1_3:19726108-19726127 Msa0108350:CDS 20.0%
!! AGTAAGATGAATTAAAAGTA+GGG + chr1_3:19726443-19726462 None:intergenic 20.0%
!! AAGTAAGATGAATTAAAAGT+AGG + chr1_3:19726444-19726463 None:intergenic 20.0%
!!! ATATCAATTTGTTTGATTCA+AGG + chr1_3:19726742-19726761 None:intergenic 20.0%
!! CAAACAAATTGATATTTGAT+TGG - chr1_3:19726747-19726766 Msa0108350:intron 20.0%
!!! TTAGCTTCCTTTTAATAATT+AGG - chr1_3:19727292-19727311 Msa0108350:intron 20.0%
!! AAAGGAACCTAATTATTAAA+AGG + chr1_3:19727302-19727321 None:intergenic 20.0%
!!! ATAGTATAGTTTAATTTTGG+CGG + chr1_3:19727480-19727499 None:intergenic 20.0%
!! TAAATCAATGTATCTCTTTA+AGG + chr1_3:19727664-19727683 None:intergenic 20.0%
!! TGTTATTCAGTAATTAAAAG+AGG + chr1_3:19727722-19727741 None:intergenic 20.0%
!! AAGTTAATTTAAGCATAAGT+CGG + chr1_3:19727764-19727783 None:intergenic 20.0%
!! ATGTATGTCAAAGTAAATTT+AGG + chr1_3:19727868-19727887 None:intergenic 20.0%
! AGAAAATATGAGAAGAAAAG+TGG + chr1_3:19725187-19725206 None:intergenic 25.0%
! ATGATAAATATACAAACCCT+TGG + chr1_3:19725268-19725287 None:intergenic 25.0%
!! TCATATTTGTTTAGGTTATG+TGG - chr1_3:19725284-19725303 Msa0108350:intron 25.0%
!!! ACTATGATCATTAATGGATT+TGG + chr1_3:19725434-19725453 None:intergenic 25.0%
! TGTATCACTATGATCATTAA+TGG + chr1_3:19725440-19725459 None:intergenic 25.0%
! TCCTTTGATATCTATGTATT+TGG - chr1_3:19725708-19725727 Msa0108350:intron 25.0%
! CCTTTGATATCTATGTATTT+GGG - chr1_3:19725709-19725728 Msa0108350:intron 25.0%
! AATACATTTGATGCATTTAG+TGG + chr1_3:19726077-19726096 None:intergenic 25.0%
! ACTAAATGCATCAAATGTAT+TGG - chr1_3:19726076-19726095 Msa0108350:CDS 25.0%
! CTAAATGCATCAAATGTATT+GGG - chr1_3:19726077-19726096 Msa0108350:CDS 25.0%
! ATTGTTGCAAAGATATTGAA+AGG - chr1_3:19726174-19726193 Msa0108350:intron 25.0%
! TTGTTGCAAAGATATTGAAA+GGG - chr1_3:19726175-19726194 Msa0108350:intron 25.0%
! GATTTGAAGAATATTTGTCA+AGG - chr1_3:19726224-19726243 Msa0108350:intron 25.0%
! TGATACAATGAAAATCTTGT+GGG + chr1_3:19726280-19726299 None:intergenic 25.0%
! ATGATACAATGAAAATCTTG+TGG + chr1_3:19726281-19726300 None:intergenic 25.0%
!! TAGGATCCTTTTTAATGTTT+TGG - chr1_3:19726792-19726811 Msa0108350:CDS 25.0%
! AGCATACCAAAACATTAAAA+AGG + chr1_3:19726801-19726820 None:intergenic 25.0%
!! ATGTTGCTGAAATATTTTCT+AGG - chr1_3:19727136-19727155 Msa0108350:intron 25.0%
! AAATTCAAAATAGTGCCTTT+AGG + chr1_3:19727171-19727190 None:intergenic 25.0%
! AAGCTAAAACCAAATTATTG+AGG + chr1_3:19727279-19727298 None:intergenic 25.0%
! AAATTGTTGTACTACTATAG+TGG - chr1_3:19727535-19727554 Msa0108350:CDS 25.0%
! AATTGTTGTACTACTATAGT+GGG - chr1_3:19727536-19727555 Msa0108350:CDS 25.0%
!!! TTAGCTTGTTTTACTCTATT+TGG + chr1_3:19727605-19727624 None:intergenic 25.0%
! AGTAATTAAAAGAGGTCAAA+TGG + chr1_3:19727714-19727733 None:intergenic 25.0%
!!! GATTTTTTTGACATACATGT+TGG - chr1_3:19727803-19727822 Msa0108350:CDS 25.0%
!!! GATTTTTTTGACATACATGT+TGG - chr1_3:19727803-19727822 Msa0108350:CDS 25.0%
!! CAATTTTTCTACATACATGT+TGG - chr1_3:19727892-19727911 Msa0108350:intron 25.0%
! AAATTACAGAATATCTCTTC+CGG - chr1_3:19727981-19728000 Msa0108350:intron 25.0%
AAGATACTAAACAGGAAACT+TGG - chr1_3:19725325-19725344 Msa0108350:intron 30.0%
AATAAAGGATCTGTAGAACT+TGG + chr1_3:19725376-19725395 None:intergenic 30.0%
AAGTTCTACAGATCCTTTAT+TGG - chr1_3:19725375-19725394 Msa0108350:intron 30.0%
! TCATTATTGGTAGCCAATAA+AGG + chr1_3:19725391-19725410 None:intergenic 30.0%
TTTGTTAGTACATGGAACAT+AGG - chr1_3:19725627-19725646 Msa0108350:intron 30.0%
CCCAAATACATAGATATCAA+AGG + chr1_3:19725712-19725731 None:intergenic 30.0%
TGCATGTCCATATATATATG+TGG - chr1_3:19725991-19726010 Msa0108350:CDS 30.0%
! TTAGAAATGCTTTGAACAAG+AGG - chr1_3:19726141-19726160 Msa0108350:intron 30.0%
GATACAATGAAAATCTTGTG+GGG + chr1_3:19726279-19726298 None:intergenic 30.0%
TTGTATCATTAGCAAGCAAA+TGG - chr1_3:19726292-19726311 Msa0108350:intron 30.0%
TTGGTATATTGATATCTGTG+TGG - chr1_3:19726315-19726334 Msa0108350:intron 30.0%
TGGTATATTGATATCTGTGT+GGG - chr1_3:19726316-19726335 Msa0108350:intron 30.0%
! AAAGTAGGGTTTGGTTAATT+AGG + chr1_3:19726429-19726448 None:intergenic 30.0%
GATGAATTAAAAGTAGGGTT+TGG + chr1_3:19726438-19726457 None:intergenic 30.0%
ATCTAATTGGACACTAATCA+AGG + chr1_3:19726538-19726557 None:intergenic 30.0%
TTAACCTTAATCCTTTGAGT+TGG - chr1_3:19726677-19726696 Msa0108350:intron 30.0%
!! TATGCTCGAATTGTTATTTC+TGG - chr1_3:19726815-19726834 Msa0108350:CDS 30.0%
!! ATGCTCGAATTGTTATTTCT+GGG - chr1_3:19726816-19726835 Msa0108350:CDS 30.0%
!!! CTGGGAATATTTTTTTAACC+TGG - chr1_3:19726834-19726853 Msa0108350:CDS 30.0%
TTCAACAGTTGAAATTCAGT+TGG + chr1_3:19726876-19726895 None:intergenic 30.0%
CCAACTAAATTTCAACATGT+TGG + chr1_3:19726922-19726941 None:intergenic 30.0%
CCAACATGTTGAAATTTAGT+TGG - chr1_3:19726919-19726938 Msa0108350:CDS 30.0%
TTACTATTCTGACAAATTGC+AGG - chr1_3:19727008-19727027 Msa0108350:CDS 30.0%
TACTATTCTGACAAATTGCA+GGG - chr1_3:19727009-19727028 Msa0108350:CDS 30.0%
TCATGATCAAGAATCTTTCT+TGG + chr1_3:19727195-19727214 None:intergenic 30.0%
! AATTATTGAGGTTGATTGGT+TGG + chr1_3:19727267-19727286 None:intergenic 30.0%
ACCAATCAACCTCAATAATT+TGG - chr1_3:19727267-19727286 Msa0108350:intron 30.0%
! ACCAAATTATTGAGGTTGAT+TGG + chr1_3:19727271-19727290 None:intergenic 30.0%
!!! CTTTGTTTTCATGATTTGGT+GGG + chr1_3:19727325-19727344 None:intergenic 30.0%
!!! ACTTTGTTTTCATGATTTGG+TGG + chr1_3:19727326-19727345 None:intergenic 30.0%
!!! AGCACTTTGTTTTCATGATT+TGG + chr1_3:19727329-19727348 None:intergenic 30.0%
! CTTTAGTTTAGCATACATGT+TGG - chr1_3:19727781-19727800 Msa0108350:CDS 30.0%
TTGACATACATGTTGGATTA+TGG - chr1_3:19727810-19727829 Msa0108350:CDS 30.0%
TGGCTAACAAGATACTAAAC+AGG - chr1_3:19725317-19725336 Msa0108350:intron 35.0%
CATATGCAGAAAAGTTGTAG+TGG - chr1_3:19725540-19725559 Msa0108350:intron 35.0%
!! GAAAAGTTGTAGTGGTTTTG+TGG - chr1_3:19725548-19725567 Msa0108350:intron 35.0%
! GAAGGGTTTTTGTTAGTACA+TGG - chr1_3:19725619-19725638 Msa0108350:intron 35.0%
TCAATATTCAACCCTTCATC+TGG + chr1_3:19725663-19725682 None:intergenic 35.0%
AGATGAAGGGTTGAATATTG+AGG - chr1_3:19725662-19725681 Msa0108350:intron 35.0%
TAATTTCAGCACTCACTTCA+TGG - chr1_3:19725732-19725751 Msa0108350:intron 35.0%
ATCATTAGCAAGCAAATGGT+TGG - chr1_3:19726296-19726315 Msa0108350:intron 35.0%
GATGTCTAATGAAAGGACTA+AGG + chr1_3:19726352-19726371 None:intergenic 35.0%
ACACATGGATGTCTAATGAA+AGG + chr1_3:19726359-19726378 None:intergenic 35.0%
ATTGACAGTGATGAGATTAG+TGG + chr1_3:19726507-19726526 None:intergenic 35.0%
TTAGATTATTCCAACGACTG+AGG - chr1_3:19726595-19726614 Msa0108350:intron 35.0%
CAGTTGAAATTCAGTTGGAT+AGG + chr1_3:19726871-19726890 None:intergenic 35.0%
!! TCTAGGACAACTTTTCCTAA+AGG - chr1_3:19727153-19727172 Msa0108350:intron 35.0%
!!! TTTTCATGATTTGGTGGGAA+AGG + chr1_3:19727320-19727339 None:intergenic 35.0%
AATTTGTCCTGCTAGATTGA+AGG - chr1_3:19727454-19727473 Msa0108350:CDS 35.0%
TGCAGTCATGTAATATTGCT+TGG - chr1_3:19727952-19727971 Msa0108350:intron 35.0%
ATCTTGTTAGCCACTAATGC+AGG + chr1_3:19725310-19725329 None:intergenic 40.0%
GTTAGTACATGGAACATAGG+TGG - chr1_3:19725630-19725649 Msa0108350:intron 40.0%
!! CACTTCATGGTTTTCTAGCA+TGG - chr1_3:19725745-19725764 Msa0108350:intron 40.0%
TCACTATGTTTGGCAACTCT+AGG - chr1_3:19725879-19725898 Msa0108350:intron 40.0%
! TATGTTTGGCAACTCTAGGA+CGG - chr1_3:19725883-19725902 Msa0108350:intron 40.0%
CCTTCCAACTCAAAGGATTA+AGG + chr1_3:19726684-19726703 None:intergenic 40.0%
!! CCTTAATCCTTTGAGTTGGA+AGG - chr1_3:19726681-19726700 Msa0108350:intron 40.0%
TATTGTGCAATCGAGCACAT+AGG - chr1_3:19726773-19726792 Msa0108350:CDS 40.0%
TTCAGTTGGATAGGTTTCAG+AGG + chr1_3:19726862-19726881 None:intergenic 40.0%
! AAGAAGGAGATGAGAAGCAT+AGG - chr1_3:19727106-19727125 Msa0108350:intron 40.0%
! ATTGAGGTTGATTGGTTGGA+CGG + chr1_3:19727263-19727282 None:intergenic 40.0%
TAGCAGGACAAATTCAAAGC+TGG + chr1_3:19727448-19727467 None:intergenic 40.0%
GTGGAATTGCACCAGATGAA+GGG - chr1_3:19725649-19725668 Msa0108350:intron 45.0%
!! CTCTAGGACGGAATTAGAGA+TGG - chr1_3:19725895-19725914 Msa0108350:intron 45.0%
CATCCATGTGTCTCATGTGT+TGG - chr1_3:19726368-19726387 Msa0108350:intron 45.0%
CATCCAACACATGAGACACA+TGG + chr1_3:19726374-19726393 None:intergenic 45.0%
TGTGTCTCATGTGTTGGATG+TGG - chr1_3:19726374-19726393 Msa0108350:intron 45.0%
ATGTGTTGGATGTGGCATCA+TGG - chr1_3:19726382-19726401 Msa0108350:intron 45.0%
TGTGTTGGATGTGGCATCAT+GGG - chr1_3:19726383-19726402 Msa0108350:intron 45.0%
AAGGTCCAACCGAATCTCAA+CGG - chr1_3:19726700-19726719 Msa0108350:intron 45.0%
TCGATCCTACCGTTGAGATT+CGG + chr1_3:19726712-19726731 None:intergenic 45.0%
CAACATGTTGGATTCGAGCT+AGG + chr1_3:19726910-19726929 None:intergenic 45.0%
! CTAGCTTCTGGAGGAAAAGA+AGG - chr1_3:19727090-19727109 Msa0108350:CDS 45.0%
AGTAAGCGTGTGGTTTCTTC+CGG + chr1_3:19728003-19728022 None:intergenic 45.0%
!!! TTTATTTTTTTATTTATTGA+AGG - chr1_3:19725601-19725620 Msa0108350:intron 5.0%
!!! TTATTTTTTTATTTATTGAA+GGG - chr1_3:19725602-19725621 Msa0108350:intron 5.0%
GGTTATGTGGCCTGCATTAG+TGG - chr1_3:19725297-19725316 Msa0108350:intron 50.0%
GGTGGAATTGCACCAGATGA+AGG - chr1_3:19725648-19725667 Msa0108350:intron 50.0%
! GCTGATTTACACTGCTGAGC+TGG + chr1_3:19726257-19726276 None:intergenic 50.0%
TGTGGCATCATGGGCTTCTT+AGG - chr1_3:19726392-19726411 Msa0108350:intron 50.0%
CATGGGCTTCTTAGGCAACA+AGG - chr1_3:19726400-19726419 Msa0108350:intron 50.0%
TCCAACGACTGAGGTGAAGT+AGG - chr1_3:19726604-19726623 Msa0108350:intron 50.0%
TCCTACTTCACCTCAGTCGT+TGG + chr1_3:19726608-19726627 None:intergenic 50.0%
GGTTGGACCTTCCAACTCAA+AGG + chr1_3:19726691-19726710 None:intergenic 50.0%
TCCAACCGAATCTCAACGGT+AGG - chr1_3:19726704-19726723 Msa0108350:intron 50.0%
! TCCTACCGTTGAGATTCGGT+TGG + chr1_3:19726708-19726727 None:intergenic 50.0%
GGATAGGTTTCAGAGGATCC+AGG + chr1_3:19726855-19726874 None:intergenic 50.0%
TAGTTGGATCGACTGCACAG+AGG - chr1_3:19726935-19726954 Msa0108350:CDS 50.0%
! GTGTGCAGTCATCTAGCTTC+TGG - chr1_3:19727078-19727097 Msa0108350:CDS 50.0%
! TGCAGTCATCTAGCTTCTGG+AGG - chr1_3:19727081-19727100 Msa0108350:CDS 50.0%
TTGGATCGACTGCACAGAGG+AGG - chr1_3:19726938-19726957 Msa0108350:CDS 55.0%
TGGATCGACTGCACAGAGGA+GGG - chr1_3:19726939-19726958 Msa0108350:CDS 55.0%
TTGGCGGCCTTCAATCTAGC+AGG + chr1_3:19727464-19727483 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 19725156 19728023 19725156 ID=Msa0108350;Name=Msa0108350
chr1_3 mRNA 19725156 19728023 19725156 ID=Msa0108350-mRNA-1;Parent=Msa0108350;Name=Msa0108350-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|0.83|0.57|7|0|293
chr1_3 exon 19728003 19728023 19728003 ID=Msa0108350-mRNA-1:exon:7121;Parent=Msa0108350-mRNA-1
chr1_3 exon 19727709 19727881 19727709 ID=Msa0108350-mRNA-1:exon:7120;Parent=Msa0108350-mRNA-1
chr1_3 exon 19727449 19727556 19727449 ID=Msa0108350-mRNA-1:exon:7119;Parent=Msa0108350-mRNA-1
chr1_3 exon 19726915 19727121 19726915 ID=Msa0108350-mRNA-1:exon:7118;Parent=Msa0108350-mRNA-1
chr1_3 exon 19726758 19726875 19726758 ID=Msa0108350-mRNA-1:exon:7117;Parent=Msa0108350-mRNA-1
chr1_3 exon 19725965 19726149 19725965 ID=Msa0108350-mRNA-1:exon:7116;Parent=Msa0108350-mRNA-1
chr1_3 exon 19725156 19725222 19725156 ID=Msa0108350-mRNA-1:exon:7115;Parent=Msa0108350-mRNA-1
chr1_3 CDS 19728003 19728023 19728003 ID=Msa0108350-mRNA-1:cds;Parent=Msa0108350-mRNA-1
chr1_3 CDS 19727709 19727881 19727709 ID=Msa0108350-mRNA-1:cds;Parent=Msa0108350-mRNA-1
chr1_3 CDS 19727449 19727556 19727449 ID=Msa0108350-mRNA-1:cds;Parent=Msa0108350-mRNA-1
chr1_3 CDS 19726915 19727121 19726915 ID=Msa0108350-mRNA-1:cds;Parent=Msa0108350-mRNA-1
chr1_3 CDS 19726758 19726875 19726758 ID=Msa0108350-mRNA-1:cds;Parent=Msa0108350-mRNA-1
chr1_3 CDS 19725965 19726149 19725965 ID=Msa0108350-mRNA-1:cds;Parent=Msa0108350-mRNA-1
chr1_3 CDS 19725156 19725222 19725156 ID=Msa0108350-mRNA-1:cds;Parent=Msa0108350-mRNA-1
Gene Sequence

>Msa0108350

ATGACTAGAAAACTAGCAAAAGTTATGTGGCCTGCATTAGTGGCTAACAAGATACTAAACAGGAAACTTGGAAGCAGAAATTTCATAGCAGATTATCCAAGTTCTACAGATCCTTTATTGGCTACCAATAATGATGATCAATTATCTCTAAGCACCAAATCCATTAATGATCATAGTGATACACAAAAGTACAAGGTTTTTGTTAGTACATGGAACATAGGTGGAATTGCACCAGATGAAGGGTTGAATATTGAGGATTTGTTAGAGACATGCAGCAAGTCCTTTGATATCTATGTATTTGGGTTTCAAGAAATTGTGCCACTAAATGCATCAAATGTATTGGGATCAGAAGATAGTAAGATTTCAACAAAATGGAATTCTTTAATTAGAAATGCTTTGAACAAGAGGACACATCACTATTGTTGCAAAGATATTGAAAGGGATGATGATGATGATAATATAGAGCAAGATTTGAAGAATATTTGTCAAGGAAATATTCCAGCTCAGCACAAGCAAATGGTTGGTATATTGATATCTGTGTGGGTTAGAAGTGACCTTAGTCCTTTCATTAGACATCCATGTGTCTCATGTGTTGGATGTGGCATCATGGGCTTCTTAGGCAACAAGGGTTCTGTATCTGTGAGATTTCTATTACATGAAACAAGCTTCTGCTTTGTGTGCAGTCATCTAGCTTCTGGAGGAAAAGAAGGAGATGAGAAGCATAGGAATTCTAATGTTGCTGAAATATTTTCTAGGACAACTTTTCCTAAAGGCACTATTTTGAATTTACCAAGAAAGATTCTTGATCATGATCATGTAATATTGCTTGGAGATTTAAATTACAGAATATCTCTTCCGGAAGAAACCACACGCTTACTT

Protein sequence

>Msa0108350

MTRKLAKVMWPALVANKILNRKLGSRNFIADYPSSTDPLLATNNDDQLSLSTKSINDHSDTQKYKVFVSTWNIGGIAPDEGLNIEDLLETCSKSFDIYVFGFQEIVPLNASNVLGSEDSKISTKWNSLIRNALNKRTHHYCCKDIERDDDDDNIEQDLKNICQGNIPAQHKQMVGILISVWVRSDLSPFIRHPCVSCVGCGIMGFLGNKGSVSVRFLLHETSFCFVCSHLASGGKEGDEKHRNSNVAEIFSRTTFPKGTILNLPRKILDHDHVILLGDLNYRISLPEETTRLL