Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129340 | XP_013469320.1 | 97.948 | 536 | 11 | 0 | 1 | 536 | 1 | 536 | 0.0 | 1088 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129340 | sp|Q9P4X3|UTP7_SCHPO | 38.580 | 521 | 301 | 8 | 23 | 533 | 9 | 520 | 3.87e-119 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129340 | A0A072VPQ9 | 97.948 | 536 | 11 | 0 | 1 | 536 | 1 | 536 | 0.0 | 1088 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0129340 | Msa0172930 | 0.800952 | 1.132237e-48 | -8.615850e-47 |
| Msa0129340 | Msa0437020 | 0.824695 | 7.021989e-54 | -8.615850e-47 |
| Msa0129340 | Msa0586420 | 0.825242 | 5.215070e-54 | -8.615850e-47 |
| Msa0129340 | Msa0746960 | 0.991992 | 1.088633e-190 | -8.615850e-47 |
| Msa0129340 | Msa1123770 | 0.819103 | 1.384517e-52 | -8.615850e-47 |
| Msa0129340 | Msa1169910 | 0.809239 | 2.087717e-50 | -8.615850e-47 |
| Msa0129340 | Msa1385720 | 0.813809 | 2.120460e-51 | -8.615850e-47 |
| Msa0129340 | Msa1434090 | 0.802879 | 4.550566e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129340 | MtrunA17_Chr1g0197651 | 97.948 | 536 | 11 | 0 | 1 | 536 | 1 | 536 | 0.0 | 1088 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129340 | AT3G10530.1 | 67.103 | 535 | 166 | 5 | 4 | 532 | 5 | 535 | 0.0 | 723 |
Find 166 sgRNAs with CRISPR-Local
Find 443 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGCTTCTACCAACAAATT+TGG | 0.135356 | 1_3:-59243324 | Msa0129340:CDS |
| AGTGTTGAGGCTTCAGTTTC+TGG | 0.160612 | 1_3:-59243361 | Msa0129340:CDS |
| GTGCAGCTGCAATCTCTTTC+TGG | 0.181319 | 1_3:+59248953 | None:intergenic |
| CAGGTTCTGAGGGATGTTTC+TGG | 0.181331 | 1_3:-59242931 | Msa0129340:CDS |
| CCATCATCATAACTAAATTT+TGG | 0.187157 | 1_3:-59242355 | Msa0129340:exon |
| TGAAGAAGAAAGGGTTTATT+TGG | 0.202123 | 1_3:+59249018 | None:intergenic |
| ATTTGGGATGCTTCTTTATC+AGG | 0.215020 | 1_3:-59243307 | Msa0129340:CDS |
| ACAAACCGCTGTAAAGATTT+TGG | 0.230964 | 1_3:+59242388 | None:intergenic |
| GGGAAATTTCGAACTGGTTT+AGG | 0.234558 | 1_3:-59243261 | Msa0129340:CDS |
| TCAGTGGAAGGCTTGTTATT+TGG | 0.239131 | 1_3:+59248891 | None:intergenic |
| TCACTCAAATGGCCACTTAA+TGG | 0.240805 | 1_3:-59243091 | Msa0129340:CDS |
| CTCTGTTTAGGTGTTTCAAA+TGG | 0.246022 | 1_3:+59242736 | None:intergenic |
| CGACCATACGAAGACGTTCT+AGG | 0.250652 | 1_3:-59242838 | Msa0129340:CDS |
| CTGGTAAACGTAGGTAATTT+TGG | 0.260220 | 1_3:+59249084 | None:intergenic |
| TACTTCAAGTGGCCGGTATA+TGG | 0.286386 | 1_3:-59245029 | Msa0129340:CDS |
| ACTTTGGAGTTTAGTCAAAA+AGG | 0.286444 | 1_3:-59242985 | Msa0129340:CDS |
| AGGTAAGGCAGATCAAATTT+TGG | 0.294529 | 1_3:-59242212 | Msa0129340:three_prime_UTR |
| TAAGGGCCACCTAGCAATTA+TGG | 0.314562 | 1_3:-59244993 | Msa0129340:CDS |
| GAGCCTGATCAGGGAGCTTC+AGG | 0.314653 | 1_3:-59244957 | Msa0129340:intron |
| GTTCTCCTGCTCCTGGAATA+AGG | 0.316425 | 1_3:+59242785 | None:intergenic |
| AGGAGAAGCTGCTAATTTAA+AGG | 0.324134 | 1_3:-59248589 | Msa0129340:intron |
| AATAATAAAATCGATTTCTA+AGG | 0.326956 | 1_3:+59242242 | None:intergenic |
| ATTGCTAGAGAGAAATTATA+TGG | 0.329371 | 1_3:-59248430 | Msa0129340:CDS |
| TGGCTTCTACCAACAAATTT+GGG | 0.332802 | 1_3:-59243323 | Msa0129340:CDS |
| GAAGGAGAAATTACTTTCTC+TGG | 0.335867 | 1_3:+59244490 | None:intergenic |
| CATGACTCATTCAATGGTTA+AGG | 0.339749 | 1_3:-59242887 | Msa0129340:CDS |
| TTGTCTAGTATCCTTATTCC+AGG | 0.340451 | 1_3:-59242796 | Msa0129340:CDS |
| TGGTAGAAGCCAGAAGAAAA+TGG | 0.349479 | 1_3:+59243334 | None:intergenic |
| GGTATCCATACATATATAAT+CGG | 0.354871 | 1_3:-59243908 | Msa0129340:CDS |
| TACAACGGGGTTGTTTCTTT+AGG | 0.372666 | 1_3:-59243210 | Msa0129340:CDS |
| CACAGAGCTTCATTGCCTTA+AGG | 0.379605 | 1_3:-59243880 | Msa0129340:intron |
| TGGAATTAAACCCTTACAAC+GGG | 0.383580 | 1_3:-59243224 | Msa0129340:CDS |
| CAATGCAAAGAGGCCTTACT+TGG | 0.392464 | 1_3:-59242479 | Msa0129340:CDS |
| AAAGAAACAACCCCGTTGTA+AGG | 0.402029 | 1_3:+59243213 | None:intergenic |
| CCAAAATTTAGTTATGATGA+TGG | 0.408449 | 1_3:+59242355 | None:intergenic |
| TGATGAATCTGAGCCTGATC+AGG | 0.411334 | 1_3:-59244967 | Msa0129340:CDS |
| GAGAACCCAACTTTGATTCA+TGG | 0.414011 | 1_3:-59242768 | Msa0129340:CDS |
| ATCTGCTAAAGCTGCTGCTC+AGG | 0.414409 | 1_3:-59248404 | Msa0129340:CDS |
| AAGAAGCATCCCAAATTTGT+TGG | 0.420273 | 1_3:+59243314 | None:intergenic |
| TCTCACCGTACCGATCTTGC+TGG | 0.422324 | 1_3:+59242651 | None:intergenic |
| TCCAAAGTATTTGCATGGCT+TGG | 0.425047 | 1_3:+59243000 | None:intergenic |
| GAAGTAAAGTCTATTGTATA+CGG | 0.427102 | 1_3:+59245046 | None:intergenic |
| TCTGTTTAGGTGTTTCAAAT+GGG | 0.437717 | 1_3:+59242737 | None:intergenic |
| TAACAAGCCTTCCACTGAAC+AGG | 0.438951 | 1_3:-59248886 | Msa0129340:intron |
| GTTACAATGGGTACAATAGC+TGG | 0.439170 | 1_3:-59243282 | Msa0129340:CDS |
| TGCAACCCATGAATCAAAGT+TGG | 0.442723 | 1_3:+59242762 | None:intergenic |
| CAATATGATATTACTTTACC+AGG | 0.444529 | 1_3:-59247374 | Msa0129340:intron |
| GTACCTGAAGCTCCCTGATC+AGG | 0.447625 | 1_3:+59244954 | None:intergenic |
| TCTAGGCATAGGACATTCAA+TGG | 0.452742 | 1_3:-59242821 | Msa0129340:CDS |
| GCAACCCATGAATCAAAGTT+GGG | 0.456061 | 1_3:+59242763 | None:intergenic |
| GCTCTGGCATTTCACTCAAA+TGG | 0.456207 | 1_3:-59243102 | Msa0129340:CDS |
| CAGAAACATCCCTCAGAACC+TGG | 0.456648 | 1_3:+59242932 | None:intergenic |
| GTGGAAGGCTTGTTATTTGG+AGG | 0.457414 | 1_3:+59248894 | None:intergenic |
| ACCAAGCCATGCAAATACTT+TGG | 0.458833 | 1_3:-59243001 | Msa0129340:CDS |
| TCTGTGTTGTGTTGTGTGAC+TGG | 0.461489 | 1_3:+59249065 | None:intergenic |
| CCGTCCCGATTATATATGTA+TGG | 0.461991 | 1_3:+59243903 | None:intergenic |
| TATGGCTATTGGTGGTCGTA+AGG | 0.463097 | 1_3:-59245011 | Msa0129340:CDS |
| GGATCCAGCATGATTGTCTC+AGG | 0.464997 | 1_3:+59242673 | None:intergenic |
| TCATTTATGGTTAAAGGTGT+AGG | 0.469000 | 1_3:+59242154 | None:intergenic |
| GGCTTGCTTGCGTGTGGTAA+TGG | 0.469336 | 1_3:-59242964 | Msa0129340:CDS |
| CTTTATCAGGATGTTACAAT+GGG | 0.469440 | 1_3:-59243294 | Msa0129340:CDS |
| CTTGACAAGGGGAGACGAAC+TGG | 0.470362 | 1_3:+59243152 | None:intergenic |
| TTGGGACTTGAGGAAATTTG+AGG | 0.474292 | 1_3:-59243037 | Msa0129340:CDS |
| AGTGGCCGGTATATGGCTAT+TGG | 0.477411 | 1_3:-59245022 | Msa0129340:CDS |
| CTGGTGCACAGAACTATTCA+AGG | 0.480463 | 1_3:-59242912 | Msa0129340:CDS |
| GCTAACTGCACAAGAGATAG+AGG | 0.481995 | 1_3:-59242611 | Msa0129340:CDS |
| ACAATAGACTTTACTTCAAG+TGG | 0.483812 | 1_3:-59245040 | Msa0129340:CDS |
| AGAACCCAACTTTGATTCAT+GGG | 0.484488 | 1_3:-59242767 | Msa0129340:CDS |
| AAGGCATAGAAAAGACGTAT+AGG | 0.486312 | 1_3:-59247448 | Msa0129340:CDS |
| AAGGTACATGACTCATTCAA+TGG | 0.486947 | 1_3:-59242893 | Msa0129340:CDS |
| CAAGTAAGGCCTCTTTGCAT+TGG | 0.491994 | 1_3:+59242480 | None:intergenic |
| ACCTAAACAGAGAAGAGAAA+AGG | 0.494344 | 1_3:-59242725 | Msa0129340:CDS |
| AAATTAAGCTTTGGGACTTG+AGG | 0.496393 | 1_3:-59243047 | Msa0129340:CDS |
| AGGAGCATGGTTCAGTGTTG+AGG | 0.496647 | 1_3:-59243374 | Msa0129340:CDS |
| AAGTTGGGTTCTCCTGCTCC+TGG | 0.498038 | 1_3:+59242778 | None:intergenic |
| TTATTATTGCCTTTCAGGTA+AGG | 0.498810 | 1_3:-59242227 | Msa0129340:three_prime_UTR |
| GGCCACTTAATGGCTACTGC+CGG | 0.499782 | 1_3:-59243081 | Msa0129340:CDS |
| ATAGCTGGGAAATTTCGAAC+TGG | 0.501469 | 1_3:-59243267 | Msa0129340:CDS |
| GCCACTTAATGGCTACTGCC+GGG | 0.504950 | 1_3:-59243080 | Msa0129340:CDS |
| TTGCTGATGAACTAGAACTT+AGG | 0.505406 | 1_3:-59248629 | Msa0129340:CDS |
| TGGTAATGGTTCATATATCC+AGG | 0.507565 | 1_3:-59242950 | Msa0129340:CDS |
| TTTGATCTGCCTTACCTGAA+AGG | 0.508416 | 1_3:+59242218 | None:intergenic |
| AGCTGCTGCTCAGGCTGAGA+AGG | 0.509056 | 1_3:-59248395 | Msa0129340:intron |
| AGCTGCTGTGGAAGCTGTCA+AGG | 0.516829 | 1_3:-59242578 | Msa0129340:CDS |
| GTCAAGATGCTATGTCATCA+AGG | 0.517188 | 1_3:-59243135 | Msa0129340:CDS |
| ACAAAAGGAAGAAGCAAGGC+TGG | 0.517202 | 1_3:-59242535 | Msa0129340:CDS |
| TCTTTATCAGGATGTTACAA+TGG | 0.517499 | 1_3:-59243295 | Msa0129340:CDS |
| CTGGTAAAGTAATATCATAT+TGG | 0.522994 | 1_3:+59247375 | None:intergenic |
| AAAGAAACAGAAAACTAATG+AGG | 0.523271 | 1_3:-59242422 | Msa0129340:CDS |
| AGTGCGGCGGTGAAGAAGAA+AGG | 0.524077 | 1_3:+59249008 | None:intergenic |
| GAAAGAGATTGCAGCTGCAC+CGG | 0.524620 | 1_3:-59248950 | Msa0129340:five_prime_UTR |
| AGTATCCTTATTCCAGGAGC+AGG | 0.524714 | 1_3:-59242790 | Msa0129340:CDS |
| AAGGAGAAATTACTTTCTCT+GGG | 0.524964 | 1_3:+59244491 | None:intergenic |
| TCAAGGGCCAGTCTCAGCTC+TGG | 0.526804 | 1_3:-59243118 | Msa0129340:CDS |
| GTCACACAACACAACACAGA+CGG | 0.528015 | 1_3:-59249062 | Msa0129340:five_prime_UTR |
| GGCTGAGATGGAAGCTGCTG+TGG | 0.531233 | 1_3:-59242590 | Msa0129340:CDS |
| ATTCATACCTGTTCAGTGGA+AGG | 0.532716 | 1_3:+59248879 | None:intergenic |
| GAGTTTCTTCCATCTTGCAC+CGG | 0.539209 | 1_3:+59248931 | None:intergenic |
| ACGACGGTGCACAGAGAGAG+AGG | 0.539312 | 1_3:+59248982 | None:intergenic |
| ATGACTCATTCAATGGTTAA+GGG | 0.540953 | 1_3:-59242886 | Msa0129340:CDS |
| TCCACCTGAGACAATCATGC+TGG | 0.543781 | 1_3:-59242677 | Msa0129340:CDS |
| CTAGGCATAGGACATTCAAT+GGG | 0.546036 | 1_3:-59242820 | Msa0129340:CDS |
| CAGCTGCAATCTCTTTCTGG+TGG | 0.546179 | 1_3:+59248956 | None:intergenic |
| AAGAAACAGAAAACTAATGA+GGG | 0.546267 | 1_3:-59242421 | Msa0129340:CDS |
| TAAACTCCAAAGTATTTGCA+TGG | 0.554250 | 1_3:+59242995 | None:intergenic |
| TTCATATATCCAGGTTCTGA+GGG | 0.557477 | 1_3:-59242941 | Msa0129340:CDS |
| TGAAATGCCAGAGCTGAGAC+TGG | 0.559422 | 1_3:+59243111 | None:intergenic |
| GTTCATATATCCAGGTTCTG+AGG | 0.561682 | 1_3:-59242942 | Msa0129340:CDS |
| GAAAACAAAAGGAAGAAGCA+AGG | 0.562476 | 1_3:-59242539 | Msa0129340:CDS |
| AAGAAACAACCCCGTTGTAA+GGG | 0.563141 | 1_3:+59243214 | None:intergenic |
| ATGGTTAAGGGATACCAGAT+AGG | 0.564220 | 1_3:-59242874 | Msa0129340:CDS |
| ACAAGAGATAGAGGCTGAGA+TGG | 0.568034 | 1_3:-59242602 | Msa0129340:CDS |
| CCCCGGCAGTAGCCATTAAG+TGG | 0.570074 | 1_3:+59243079 | None:intergenic |
| GGCCGGTATATGGCTATTGG+TGG | 0.570218 | 1_3:-59245019 | Msa0129340:CDS |
| GTATCCATACATATATAATC+GGG | 0.570684 | 1_3:-59243907 | Msa0129340:CDS |
| TTACAATGGGTACAATAGCT+GGG | 0.572680 | 1_3:-59243281 | Msa0129340:CDS |
| TGGATTATGCCTAGCGAAGG+AGG | 0.572860 | 1_3:-59247485 | Msa0129340:CDS |
| ATGCCTAGAACGTCTTCGTA+TGG | 0.573287 | 1_3:+59242835 | None:intergenic |
| GACCACCAATAGCCATATAC+CGG | 0.573429 | 1_3:+59245017 | None:intergenic |
| TCATCATGTCCATAATTGCT+AGG | 0.576850 | 1_3:+59244984 | None:intergenic |
| TCTATATAACCTCCTTCGCT+AGG | 0.576884 | 1_3:+59247476 | None:intergenic |
| GCAGCTGCACCGGTGCAAGA+TGG | 0.578260 | 1_3:-59248940 | Msa0129340:exon |
| CTCACCGTACCGATCTTGCT+GGG | 0.578578 | 1_3:+59242652 | None:intergenic |
| GTTTCTTTAGGCCACTCAGC+CGG | 0.578772 | 1_3:-59243198 | Msa0129340:CDS |
| ATGGCTATTGGTGGTCGTAA+GGG | 0.579219 | 1_3:-59245010 | Msa0129340:CDS |
| ATGCTGGATCCCAGCAAGAT+CGG | 0.579275 | 1_3:-59242661 | Msa0129340:CDS |
| GCTTGAGATATCTACTTCAC+CGG | 0.581565 | 1_3:+59247406 | None:intergenic |
| AAAGACGTATAGGATTAAGC+AGG | 0.582780 | 1_3:-59247438 | Msa0129340:CDS |
| ACAAGGGGAGACGAACTGGT+TGG | 0.583473 | 1_3:+59243156 | None:intergenic |
| TAGACTTTACTTCAAGTGGC+CGG | 0.590973 | 1_3:-59245036 | Msa0129340:CDS |
| TCCAGCATGATTGTCTCAGG+TGG | 0.597209 | 1_3:+59242676 | None:intergenic |
| GTGCGGCGGTGAAGAAGAAA+GGG | 0.597856 | 1_3:+59249009 | None:intergenic |
| AAATCGATTTCTAAGGCCAA+AGG | 0.603087 | 1_3:+59242249 | None:intergenic |
| AAGTAGATATCTCAAGCTCA+AGG | 0.603892 | 1_3:-59247400 | Msa0129340:CDS |
| TTTAGGACGCACAAATGTGA+TGG | 0.605701 | 1_3:-59243244 | Msa0129340:CDS |
| TAGCGAAGGAGGTTATATAG+AGG | 0.605779 | 1_3:-59247474 | Msa0129340:CDS |
| GATGAATCTGAGCCTGATCA+GGG | 0.606259 | 1_3:-59244966 | Msa0129340:CDS |
| CTTCCACATAGTAACTGTAC+CGG | 0.607488 | 1_3:+59243179 | None:intergenic |
| TCAAGATGCTATGTCATCAA+GGG | 0.609077 | 1_3:-59243134 | Msa0129340:CDS |
| ACACAACACAACACAGACGG+AGG | 0.610885 | 1_3:-59249059 | Msa0129340:five_prime_UTR |
| ATGACATAGCATCTTGACAA+GGG | 0.617617 | 1_3:+59243140 | None:intergenic |
| CCACTTAATGGCTACTGCCG+GGG | 0.620121 | 1_3:-59243079 | Msa0129340:CDS |
| AAATATTCATACCTGTTCAG+TGG | 0.624277 | 1_3:+59248875 | None:intergenic |
| CTCTTTCTGGTGGAAGACGA+CGG | 0.624605 | 1_3:+59248966 | None:intergenic |
| ATGCAATTGCCAATGCAAAG+AGG | 0.626680 | 1_3:-59242489 | Msa0129340:CDS |
| CGACGGTGCACAGAGAGAGA+GGG | 0.626802 | 1_3:+59248983 | None:intergenic |
| CAGTGGATTATGCCTAGCGA+AGG | 0.626814 | 1_3:-59247488 | Msa0129340:CDS |
| GGATCCCAGCAAGATCGGTA+CGG | 0.626856 | 1_3:-59242656 | Msa0129340:CDS |
| ATTAAGCAGGAGACAATAGC+CGG | 0.629818 | 1_3:-59247425 | Msa0129340:CDS |
| TACGAAGACGTTCTAGGCAT+AGG | 0.632328 | 1_3:-59242832 | Msa0129340:CDS |
| ACAGAGAGAGAGGGAAAGTG+CGG | 0.633821 | 1_3:+59248992 | None:intergenic |
| AACTGCCAAAATCTTTACAG+CGG | 0.639793 | 1_3:-59242393 | Msa0129340:CDS |
| GAGAGAGAGGGAAAGTGCGG+CGG | 0.641152 | 1_3:+59248995 | None:intergenic |
| GGAGGTTATATAGAGGCTGA+AGG | 0.643831 | 1_3:-59247467 | Msa0129340:CDS |
| GCTGCTGTGGAAGCTGTCAA+GGG | 0.644582 | 1_3:-59242577 | Msa0129340:CDS |
| CAGCCGGTACAGTTACTATG+TGG | 0.648457 | 1_3:-59243182 | Msa0129340:CDS |
| ATGGAATTAAACCCTTACAA+CGG | 0.650725 | 1_3:-59243225 | Msa0129340:CDS |
| AAGAGAAACTGTGCGTGATG+TGG | 0.656485 | 1_3:-59244547 | Msa0129340:CDS |
| TAGTAACTGTACCGGCTGAG+TGG | 0.670354 | 1_3:+59243187 | None:intergenic |
| CCATACATATATAATCGGGA+CGG | 0.677850 | 1_3:-59243903 | Msa0129340:CDS |
| AGGTCAAAGAAGTATCTCAG+AGG | 0.688390 | 1_3:-59248609 | Msa0129340:CDS |
| TGACATAGCATCTTGACAAG+GGG | 0.690641 | 1_3:+59243141 | None:intergenic |
| TCATGTCCATAATTGCTAGG+TGG | 0.709708 | 1_3:+59244987 | None:intergenic |
| GATGACATAGCATCTTGACA+AGG | 0.739903 | 1_3:+59243139 | None:intergenic |
| GGAATTAAACCCTTACAACG+GGG | 0.772754 | 1_3:-59243223 | Msa0129340:CDS |
| GTTGTGTGACTGGTAAACGT+AGG | 0.816560 | 1_3:+59249075 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATCAAATTTATATAATTTA+AGG | - | chr1_3:59243132-59243151 | Msa0129340:CDS | 10.0% |
| !! | TAAAGAAAAAAATAATACTT+TGG | - | chr1_3:59244376-59244395 | Msa0129340:intron | 10.0% |
| !! | TATATATCAACAAAAATAAA+TGG | + | chr1_3:59244640-59244659 | None:intergenic | 10.0% |
| !!! | ATGAAATTTAAGTTGAAAAT+TGG | - | chr1_3:59243080-59243099 | Msa0129340:CDS | 15.0% |
| !! | TGTATATAGTATTAATTGAA+GGG | - | chr1_3:59244405-59244424 | Msa0129340:intron | 15.0% |
| !!! | TTTATAAAAGCATTAAAACT+AGG | + | chr1_3:59245948-59245967 | None:intergenic | 15.0% |
| !!! | TATTCTTGGATTTTAATATT+TGG | - | chr1_3:59246624-59246643 | Msa0129340:intron | 15.0% |
| !!! | ATTTTAATATTTGGTTTTTC+AGG | - | chr1_3:59246633-59246652 | Msa0129340:intron | 15.0% |
| !! | CAAAAACATTTATAGATAAA+TGG | + | chr1_3:59246756-59246775 | None:intergenic | 15.0% |
| !!! | ACATATATAATATTTTACTG+GGG | + | chr1_3:59247223-59247242 | None:intergenic | 15.0% |
| !!! | CACATATATAATATTTTACT+GGG | + | chr1_3:59247224-59247243 | None:intergenic | 15.0% |
| !! | CAGTAAAATATTATATATGT+GGG | - | chr1_3:59247223-59247242 | Msa0129340:intron | 15.0% |
| !! | AGTAAAATATTATATATGTG+GGG | - | chr1_3:59247224-59247243 | Msa0129340:intron | 15.0% |
| !! | TATCCTAAAACTAAATATAT+TGG | - | chr1_3:59247763-59247782 | Msa0129340:intron | 15.0% |
| !!! | AATAATAAAATCGATTTCTA+AGG | + | chr1_3:59248965-59248984 | None:intergenic | 15.0% |
| !!! | AATTTTTCATTTATGGTTAA+AGG | + | chr1_3:59249059-59249078 | None:intergenic | 15.0% |
| !!! | ATTTGTGAAATTTGATTTGT+AGG | - | chr1_3:59242719-59242738 | Msa0129340:CDS | 20.0% |
| !!! | TTTGTGAAATTTGATTTGTA+GGG | - | chr1_3:59242720-59242739 | Msa0129340:CDS | 20.0% |
| !! | TTTGTGTAAAATAATTGATG+TGG | - | chr1_3:59242964-59242983 | Msa0129340:CDS | 20.0% |
| !!! | TAATTGCATATTTCATTTTG+TGG | - | chr1_3:59242993-59243012 | Msa0129340:CDS | 20.0% |
| !!! | CAATTTAGAATATGTAGTTA+CGG | + | chr1_3:59243487-59243506 | None:intergenic | 20.0% |
| !!! | TAGTTACATGTTTTATGTAT+TGG | - | chr1_3:59243674-59243693 | Msa0129340:intron | 20.0% |
| !! | ACTTAATTAATCTACTTAAC+TGG | - | chr1_3:59244205-59244224 | Msa0129340:intron | 20.0% |
| !! | CTTAATTAATCTACTTAACT+GGG | - | chr1_3:59244206-59244225 | Msa0129340:intron | 20.0% |
| !! | AATAGTTGATTAGGATAATT+TGG | + | chr1_3:59244342-59244361 | None:intergenic | 20.0% |
| !! | AAATTATCCTAATCAACTAT+TGG | - | chr1_3:59244341-59244360 | Msa0129340:intron | 20.0% |
| !! | GTGTATATAGTATTAATTGA+AGG | - | chr1_3:59244404-59244423 | Msa0129340:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr1_3:59244439-59244458 | Msa0129340:intron | 20.0% |
| !!! | AATAAATGGATTGGATTTAT+GGG | + | chr1_3:59244626-59244645 | None:intergenic | 20.0% |
| !!! | AAATAAATGGATTGGATTTA+TGG | + | chr1_3:59244627-59244646 | None:intergenic | 20.0% |
| !! | ATCAACAAAAATAAATGGAT+TGG | + | chr1_3:59244635-59244654 | None:intergenic | 20.0% |
| !! | CATAATGAAAATCAATGAAA+GGG | + | chr1_3:59244754-59244773 | None:intergenic | 20.0% |
| !! | ACATAATGAAAATCAATGAA+AGG | + | chr1_3:59244755-59244774 | None:intergenic | 20.0% |
| !!! | TTTCATTGATTTTCATTATG+TGG | - | chr1_3:59244754-59244773 | Msa0129340:intron | 20.0% |
| !! | GCGTTTATTTAAATTTATGT+AGG | + | chr1_3:59245359-59245378 | None:intergenic | 20.0% |
| !! | ACATAAATTTAAATAAACGC+TGG | - | chr1_3:59245359-59245378 | Msa0129340:intron | 20.0% |
| !! | GATATTAGAAGAATGTTATA+TGG | - | chr1_3:59245607-59245626 | Msa0129340:intron | 20.0% |
| !!! | TCTTTTAAGTATTTTAAGTG+AGG | + | chr1_3:59245842-59245861 | None:intergenic | 20.0% |
| !! | TTACACTTAAAAAAATGTCT+GGG | - | chr1_3:59246860-59246879 | Msa0129340:intron | 20.0% |
| !! | AAAATGCAATTACAGAAATA+GGG | - | chr1_3:59247065-59247084 | Msa0129340:intron | 20.0% |
| !!! | CATATATAATATTTTACTGG+GGG | + | chr1_3:59247222-59247241 | None:intergenic | 20.0% |
| !!! | CCACATATATAATATTTTAC+TGG | + | chr1_3:59247225-59247244 | None:intergenic | 20.0% |
| !! | CCAGTAAAATATTATATATG+TGG | - | chr1_3:59247222-59247241 | Msa0129340:intron | 20.0% |
| !!! | CAAAATTTTCAAAATTTCAC+AGG | - | chr1_3:59247275-59247294 | Msa0129340:intron | 20.0% |
| !!! | CATCCAATATATTTAGTTTT+AGG | + | chr1_3:59247769-59247788 | None:intergenic | 20.0% |
| !! | TAGACAAAAAAATTAAGCTT+TGG | - | chr1_3:59248148-59248167 | Msa0129340:intron | 20.0% |
| !! | AGACAAAAAAATTAAGCTTT+GGG | - | chr1_3:59248149-59248168 | Msa0129340:intron | 20.0% |
| !! | AAACTGAAAAAGAAAACAAA+AGG | - | chr1_3:59248654-59248673 | Msa0129340:intron | 20.0% |
| !! | AAAAACAAAACTGAATTAAC+TGG | + | chr1_3:59248875-59248894 | None:intergenic | 20.0% |
| !!! | CGTTTTCAATTTTTCATTTA+TGG | + | chr1_3:59249066-59249085 | None:intergenic | 20.0% |
| !!! | AAGGAATAATAAGAAGCATT+CGG | + | chr1_3:59242537-59242556 | None:intergenic | 25.0% |
| ! | ATTGCTAGAGAGAAATTATA+TGG | - | chr1_3:59242774-59242793 | Msa0129340:CDS | 25.0% |
| ! | TAAGGATAATTACTCAAACA+AGG | - | chr1_3:59243150-59243169 | Msa0129340:CDS | 25.0% |
| ! | CTTGTAAAGATGTAGTATAA+GGG | + | chr1_3:59243239-59243258 | None:intergenic | 25.0% |
| ! | ACTTGTAAAGATGTAGTATA+AGG | + | chr1_3:59243240-59243259 | None:intergenic | 25.0% |
| ! | TACTACATCTTTACAAGTTA+AGG | - | chr1_3:59243242-59243261 | Msa0129340:CDS | 25.0% |
| !! | TGATTCGAGTTACTTTAAAT+CGG | - | chr1_3:59243505-59243524 | Msa0129340:intron | 25.0% |
| !!! | ATGTATTGGCTTTCTAATTT+TGG | - | chr1_3:59243688-59243707 | Msa0129340:intron | 25.0% |
| ! | CTGGTAAAGTAATATCATAT+TGG | + | chr1_3:59243832-59243851 | None:intergenic | 25.0% |
| ! | CAATATGATATTACTTTACC+AGG | - | chr1_3:59243830-59243849 | Msa0129340:intron | 25.0% |
| !! | ATGCTTGTTAATAGTATCTA+AGG | - | chr1_3:59243864-59243883 | Msa0129340:intron | 25.0% |
| !! | TGTTAATAGTATCTAAGGTT+AGG | - | chr1_3:59243869-59243888 | Msa0129340:intron | 25.0% |
| ! | TGAAACAAGATCAATAACAT+TGG | - | chr1_3:59243969-59243988 | Msa0129340:intron | 25.0% |
| ! | GAAACAAGATCAATAACATT+GGG | - | chr1_3:59243970-59243989 | Msa0129340:intron | 25.0% |
| ! | ATATTGCCTTTCAAATAATC+TGG | - | chr1_3:59244083-59244102 | Msa0129340:intron | 25.0% |
| ! | AATTGTCCAGATTATTTGAA+AGG | + | chr1_3:59244092-59244111 | None:intergenic | 25.0% |
| ! | TGAAAAACTTCACTGATATT+TGG | + | chr1_3:59244165-59244184 | None:intergenic | 25.0% |
| !! | TTCAAAATGAATGTCGTTTA+AGG | - | chr1_3:59244260-59244279 | Msa0129340:intron | 25.0% |
| ! | AAACAAACCAATAGTTGATT+AGG | + | chr1_3:59244351-59244370 | None:intergenic | 25.0% |
| ! | TAAATAATCTGGACAATTGT+AGG | + | chr1_3:59244558-59244577 | None:intergenic | 25.0% |
| ! | CTTACACAACTTAAATAATC+TGG | + | chr1_3:59244569-59244588 | None:intergenic | 25.0% |
| ! | TTCAGAAATCAGTTTAATAG+AGG | - | chr1_3:59244920-59244939 | Msa0129340:intron | 25.0% |
| ! | TGAGAAATTAAAGAGAGAAA+GGG | + | chr1_3:59245115-59245134 | None:intergenic | 25.0% |
| ! | TTGAGAAATTAAAGAGAGAA+AGG | + | chr1_3:59245116-59245135 | None:intergenic | 25.0% |
| ! | CATGTTGCATTTCATTTAAT+TGG | + | chr1_3:59245399-59245418 | None:intergenic | 25.0% |
| ! | CCATAATTTAAGAACGTAAA+AGG | + | chr1_3:59245458-59245477 | None:intergenic | 25.0% |
| !! | CCTTTTACGTTCTTAAATTA+TGG | - | chr1_3:59245455-59245474 | Msa0129340:intron | 25.0% |
| ! | TTTCAATAACTTGAATTGCT+TGG | - | chr1_3:59245579-59245598 | Msa0129340:intron | 25.0% |
| ! | AAAGTATACAAACAACTACA+TGG | + | chr1_3:59245752-59245771 | None:intergenic | 25.0% |
| ! | GAAGTAAAGTCTATTGTATA+CGG | + | chr1_3:59246161-59246180 | None:intergenic | 25.0% |
| ! | CTTACACTTAAAAAAATGTC+TGG | - | chr1_3:59246859-59246878 | Msa0129340:intron | 25.0% |
| ! | TACACTTAAAAAAATGTCTG+GGG | - | chr1_3:59246861-59246880 | Msa0129340:intron | 25.0% |
| !!! | TTTGAACTTTGAAGTAAAAG+AGG | + | chr1_3:59247048-59247067 | None:intergenic | 25.0% |
| ! | CAAAATGCAATTACAGAAAT+AGG | - | chr1_3:59247064-59247083 | Msa0129340:intron | 25.0% |
| ! | AAATGCAATTACAGAAATAG+GGG | - | chr1_3:59247066-59247085 | Msa0129340:intron | 25.0% |
| !!! | TACTTGTCTTTCTTATTTTG+TGG | - | chr1_3:59247108-59247127 | Msa0129340:intron | 25.0% |
| ! | GGTATCCATACATATATAAT+CGG | - | chr1_3:59247296-59247315 | Msa0129340:intron | 25.0% |
| ! | GTATCCATACATATATAATC+GGG | - | chr1_3:59247297-59247316 | Msa0129340:intron | 25.0% |
| !!! | TAGTTTTAGGATACGATAAA+TGG | + | chr1_3:59247756-59247775 | None:intergenic | 25.0% |
| ! | ATATATTGGATGCATCTTTA+AGG | - | chr1_3:59247777-59247796 | Msa0129340:intron | 25.0% |
| !! | TGTTTTTCTTTTCTTTTTCC+AGG | - | chr1_3:59247810-59247829 | Msa0129340:intron | 25.0% |
| ! | AAAGAAACAGAAAACTAATG+AGG | - | chr1_3:59248782-59248801 | Msa0129340:intron | 25.0% |
| ! | AAGAAACAGAAAACTAATGA+GGG | - | chr1_3:59248783-59248802 | Msa0129340:intron | 25.0% |
| ! | CCAAAATTTAGTTATGATGA+TGG | + | chr1_3:59248852-59248871 | None:intergenic | 25.0% |
| !! | CCATCATCATAACTAAATTT+TGG | - | chr1_3:59248849-59248868 | Msa0129340:intron | 25.0% |
| TGAAGAAGAAAGGGTTTATT+TGG | + | chr1_3:59242189-59242208 | None:intergenic | 30.0% | |
| AAATATTCATACCTGTTCAG+TGG | + | chr1_3:59242332-59242351 | None:intergenic | 30.0% | |
| TTTCACACTGCTTAATTTCT+AGG | - | chr1_3:59242349-59242368 | Msa0129340:exon | 30.0% | |
| TTCACACTGCTTAATTTCTA+GGG | - | chr1_3:59242350-59242369 | Msa0129340:exon | 30.0% | |
| AGCTATGTCTTTCAATGTAT+TGG | - | chr1_3:59242408-59242427 | Msa0129340:CDS | 30.0% | |
| TAAAGATGTAGTATAAGGGT+AGG | + | chr1_3:59243235-59243254 | None:intergenic | 30.0% | |
| GTTATCATGAAAACATTCTG+TGG | + | chr1_3:59243304-59243323 | None:intergenic | 30.0% | |
| AGAAGATGATTCACAATTGT+GGG | + | chr1_3:59243371-59243390 | None:intergenic | 30.0% | |
| TAGAAGATGATTCACAATTG+TGG | + | chr1_3:59243372-59243391 | None:intergenic | 30.0% | |
| AGGAATGTACTTAGTATAAC+AGG | + | chr1_3:59243429-59243448 | None:intergenic | 30.0% | |
| CATAGCGTTAATATTGACAA+AGG | + | chr1_3:59243449-59243468 | None:intergenic | 30.0% | |
| ! | TTAATTAGTGTTGAGAACCA+AGG | - | chr1_3:59243529-59243548 | Msa0129340:intron | 30.0% |
| ! | TAATTAGTGTTGAGAACCAA+GGG | - | chr1_3:59243530-59243549 | Msa0129340:intron | 30.0% |
| !!! | TTCTAATTTTGGTTATGCAG+TGG | - | chr1_3:59243699-59243718 | Msa0129340:intron | 30.0% |
| CAAGCATAATTAATAGTACC+TGG | + | chr1_3:59243851-59243870 | None:intergenic | 30.0% | |
| AAGATAATATCACACATCCA+AGG | + | chr1_3:59244049-59244068 | None:intergenic | 30.0% | |
| GAAAGGCAATATAAATGACT+AGG | + | chr1_3:59244075-59244094 | None:intergenic | 30.0% | |
| CAAATAATCTGGACAATTGT+AGG | - | chr1_3:59244094-59244113 | Msa0129340:intron | 30.0% | |
| !!! | GACATTCATTTTGAAACAGA+GGG | + | chr1_3:59244255-59244274 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr1_3:59244512-59244531 | Msa0129340:CDS | 30.0% |
| !! | GTAATTTGTTGTAGTTTGGA+GGG | + | chr1_3:59244883-59244902 | None:intergenic | 30.0% |
| !! | TTGGGTAATTTGTTGTAGTT+TGG | + | chr1_3:59244887-59244906 | None:intergenic | 30.0% |
| TCTTTGCTTCTATTCAAACA+TGG | + | chr1_3:59245014-59245033 | None:intergenic | 30.0% | |
| GAGAAATTAAAGAGAGAAAG+GGG | + | chr1_3:59245114-59245133 | None:intergenic | 30.0% | |
| TAATTTCTCAAGATAACCAC+TGG | - | chr1_3:59245125-59245144 | Msa0129340:intron | 30.0% | |
| !! | GTTGATTTATCCAATGCTTT+TGG | - | chr1_3:59245198-59245217 | Msa0129340:intron | 30.0% |
| AAATTCTTAAGCACTTGAAC+TGG | + | chr1_3:59245712-59245731 | None:intergenic | 30.0% | |
| AAATTGTTTCCAGTGAAGAA+AGG | + | chr1_3:59246076-59246095 | None:intergenic | 30.0% | |
| CAAAATATATTTGCAGAGCT+TGG | - | chr1_3:59246134-59246153 | Msa0129340:intron | 30.0% | |
| ACAATAGACTTTACTTCAAG+TGG | - | chr1_3:59246164-59246183 | Msa0129340:intron | 30.0% | |
| GTGCTTCGTAAAATTATTCT+TGG | - | chr1_3:59246610-59246629 | Msa0129340:intron | 30.0% | |
| AAGGAGAAATTACTTTCTCT+GGG | + | chr1_3:59246716-59246735 | None:intergenic | 30.0% | |
| !! | TGTTTTTGTTCTCTGTAGAA+TGG | - | chr1_3:59246768-59246787 | Msa0129340:intron | 30.0% |
| TAGAATGGATCAGTACAATT+AGG | - | chr1_3:59246783-59246802 | Msa0129340:intron | 30.0% | |
| AGAATGGATCAGTACAATTA+GGG | - | chr1_3:59246784-59246803 | Msa0129340:intron | 30.0% | |
| TACAATTAGGGAAATAAGAG+TGG | - | chr1_3:59246796-59246815 | Msa0129340:intron | 30.0% | |
| ACACTTAAAAAAATGTCTGG+GGG | - | chr1_3:59246862-59246881 | Msa0129340:intron | 30.0% | |
| TACTTTAATGATGCGAAATG+TGG | + | chr1_3:59246990-59247009 | None:intergenic | 30.0% | |
| !! | AACATTTCTAGCATCATCAA+TGG | + | chr1_3:59247386-59247405 | None:intergenic | 30.0% |
| ATGATGCTAGAAATGTTTCT+CGG | - | chr1_3:59247389-59247408 | Msa0129340:CDS | 30.0% | |
| !!! | CTAGTGGGTTTTTTATTTGA+CGG | - | chr1_3:59247469-59247488 | Msa0129340:CDS | 30.0% |
| !!! | TAGTGGGTTTTTTATTTGAC+GGG | - | chr1_3:59247470-59247489 | Msa0129340:CDS | 30.0% |
| TCAATTGTCTTTCTGAATAC+TGG | - | chr1_3:59247612-59247631 | Msa0129340:intron | 30.0% | |
| ! | AATGAAAAAAAGCACACTGT+AGG | + | chr1_3:59247687-59247706 | None:intergenic | 30.0% |
| TCTTTATCAGGATGTTACAA+TGG | - | chr1_3:59247909-59247928 | Msa0129340:intron | 30.0% | |
| CTTTATCAGGATGTTACAAT+GGG | - | chr1_3:59247910-59247929 | Msa0129340:intron | 30.0% | |
| ATGGAATTAAACCCTTACAA+CGG | - | chr1_3:59247979-59247998 | Msa0129340:intron | 30.0% | |
| !!! | CTTAATTTTTTTGTCTACCC+CGG | + | chr1_3:59248145-59248164 | None:intergenic | 30.0% |
| ! | TAAACTCCAAAGTATTTGCA+TGG | + | chr1_3:59248212-59248231 | None:intergenic | 30.0% |
| !! | ACTTTGGAGTTTAGTCAAAA+AGG | - | chr1_3:59248219-59248238 | Msa0129340:intron | 30.0% |
| ATGACTCATTCAATGGTTAA+GGG | - | chr1_3:59248318-59248337 | Msa0129340:intron | 30.0% | |
| ! | GAAAAGCTAATTTTCCTATC+TGG | + | chr1_3:59248347-59248366 | None:intergenic | 30.0% |
| TCTGTTTAGGTGTTTCAAAT+GGG | + | chr1_3:59248470-59248489 | None:intergenic | 30.0% | |
| !! | GTTTTGATATTTGTAGCCTT+TGG | - | chr1_3:59248939-59248958 | Msa0129340:exon | 30.0% |
| ! | CGATTTTATTATTGCCTTTC+AGG | - | chr1_3:59248972-59248991 | Msa0129340:five_prime_UTR | 30.0% |
| ! | TTATTATTGCCTTTCAGGTA+AGG | - | chr1_3:59248977-59248996 | Msa0129340:five_prime_UTR | 30.0% |
| GTTGAATGCAAAAATGAACA+AGG | + | chr1_3:59249027-59249046 | None:intergenic | 30.0% | |
| ! | TCATTTATGGTTAAAGGTGT+AGG | + | chr1_3:59249053-59249072 | None:intergenic | 30.0% |
| ! | TATTCCTTACATCGTTTTGC+AGG | - | chr1_3:59242549-59242568 | Msa0129340:CDS | 35.0% |
| TTGCTGATGAACTAGAACTT+AGG | - | chr1_3:59242575-59242594 | Msa0129340:CDS | 35.0% | |
| AGGAGAAGCTGCTAATTTAA+AGG | - | chr1_3:59242615-59242634 | Msa0129340:CDS | 35.0% | |
| CACACTGTACAATAATTCAC+TGG | + | chr1_3:59242871-59242890 | None:intergenic | 35.0% | |
| CTACCTAGAAGTTACTGAAA+CGG | + | chr1_3:59243406-59243425 | None:intergenic | 35.0% | |
| !!! | CTACTGGATTTCGTTTTTTG+AGG | - | chr1_3:59243555-59243574 | Msa0129340:intron | 35.0% |
| !!! | GGATTTCGTTTTTTGAGGAT+TGG | - | chr1_3:59243560-59243579 | Msa0129340:intron | 35.0% |
| TAGTGACAGTGTGTGAAAAA+AGG | - | chr1_3:59243583-59243602 | Msa0129340:intron | 35.0% | |
| GTTTGATCTTGTGTAACTTG+TGG | - | chr1_3:59243605-59243624 | Msa0129340:intron | 35.0% | |
| AAGGCATAGAAAAGACGTAT+AGG | - | chr1_3:59243756-59243775 | Msa0129340:intron | 35.0% | |
| AAAGACGTATAGGATTAAGC+AGG | - | chr1_3:59243766-59243785 | Msa0129340:intron | 35.0% | |
| AAGTAGATATCTCAAGCTCA+AGG | - | chr1_3:59243804-59243823 | Msa0129340:intron | 35.0% | |
| TAATATCACACATCCAAGGT+TGG | + | chr1_3:59244045-59244064 | None:intergenic | 35.0% | |
| AGGCAATATAAATGACTAGG+AGG | + | chr1_3:59244072-59244091 | None:intergenic | 35.0% | |
| ACTTCACTGATATTTGGTAG+AGG | + | chr1_3:59244159-59244178 | None:intergenic | 35.0% | |
| !!! | CGACATTCATTTTGAAACAG+AGG | + | chr1_3:59244256-59244275 | None:intergenic | 35.0% |
| ! | TGGATTGGATTTATGGGATA+GGG | + | chr1_3:59244620-59244639 | None:intergenic | 35.0% |
| !! | ATGGATTGGATTTATGGGAT+AGG | + | chr1_3:59244621-59244640 | None:intergenic | 35.0% |
| !! | GGTAATTTGTTGTAGTTTGG+AGG | + | chr1_3:59244884-59244903 | None:intergenic | 35.0% |
| CTGAATGACAGCAAGAAATT+GGG | + | chr1_3:59244905-59244924 | None:intergenic | 35.0% | |
| TCTGAATGACAGCAAGAAAT+TGG | + | chr1_3:59244906-59244925 | None:intergenic | 35.0% | |
| ! | TGTTTGTGGCTATAATGGAA+AGG | + | chr1_3:59244961-59244980 | None:intergenic | 35.0% |
| AACAAAAACAGCACTGTTTG+TGG | + | chr1_3:59244975-59244994 | None:intergenic | 35.0% | |
| ! | TATCCAATGCTTTTGGATGT+TGG | - | chr1_3:59245205-59245224 | Msa0129340:intron | 35.0% |
| ! | ATTCCAACATCCAAAAGCAT+TGG | + | chr1_3:59245211-59245230 | None:intergenic | 35.0% |
| ATACCAAGTGATCATCTCAT+AGG | - | chr1_3:59245777-59245796 | Msa0129340:intron | 35.0% | |
| TAACCTATGAGATGATCACT+TGG | + | chr1_3:59245783-59245802 | None:intergenic | 35.0% | |
| AGTGAGGACTTATCAACAAT+AGG | + | chr1_3:59245826-59245845 | None:intergenic | 35.0% | |
| !! | TACAAATTGTTGAAGCACTG+TGG | - | chr1_3:59245877-59245896 | Msa0129340:intron | 35.0% |
| CAAGGATAAAGTCAAAGGAA+AGG | + | chr1_3:59245980-59245999 | None:intergenic | 35.0% | |
| ! | CTTTCCTTTGACTTTATCCT+TGG | - | chr1_3:59245978-59245997 | Msa0129340:intron | 35.0% |
| TACTCCAAGGATAAAGTCAA+AGG | + | chr1_3:59245985-59246004 | None:intergenic | 35.0% | |
| ACTAGTACAAAGTTACTCCA+AGG | + | chr1_3:59245998-59246017 | None:intergenic | 35.0% | |
| TCATCATGTCCATAATTGCT+AGG | + | chr1_3:59246223-59246242 | None:intergenic | 35.0% | |
| ! | TTAACCAAGCTTGCTTTGTT+TGG | - | chr1_3:59246275-59246294 | Msa0129340:intron | 35.0% |
| AAAACCAAACAAAGCAAGCT+TGG | + | chr1_3:59246282-59246301 | None:intergenic | 35.0% | |
| !!! | AGTTGTTTTAGTGCTTCTCT+CGG | + | chr1_3:59246439-59246458 | None:intergenic | 35.0% |
| !!! | GATTCACTTTTTTCACACAC+AGG | - | chr1_3:59246524-59246543 | Msa0129340:intron | 35.0% |
| TTTCACACACAGGAAACAAA+TGG | - | chr1_3:59246534-59246553 | Msa0129340:intron | 35.0% | |
| TTCACACACAGGAAACAAAT+GGG | - | chr1_3:59246535-59246554 | Msa0129340:intron | 35.0% | |
| GAAGGAGAAATTACTTTCTC+TGG | + | chr1_3:59246717-59246736 | None:intergenic | 35.0% | |
| AGAAAGTAATTTCTCCTTCC+TGG | - | chr1_3:59246718-59246737 | Msa0129340:intron | 35.0% | |
| ! | TGTCAGAAAGCATGAATAAC+AGG | + | chr1_3:59246932-59246951 | None:intergenic | 35.0% |
| TGATGCGAAATGTGGTATTT+CGG | + | chr1_3:59246982-59247001 | None:intergenic | 35.0% | |
| GAAGTAAAAGAGGAAGCAAA+TGG | + | chr1_3:59247038-59247057 | None:intergenic | 35.0% | |
| ACTCGACATGAAGAAGAATA+TGG | + | chr1_3:59247250-59247269 | None:intergenic | 35.0% | |
| CCATACATATATAATCGGGA+CGG | - | chr1_3:59247301-59247320 | Msa0129340:intron | 35.0% | |
| CTGTATTATCCACCATTCAT+CGG | - | chr1_3:59247505-59247524 | Msa0129340:intron | 35.0% | |
| AAAATCAGGCTTGTGAATTG+AGG | + | chr1_3:59247560-59247579 | None:intergenic | 35.0% | |
| TTGATCCACACATCAAAATC+AGG | + | chr1_3:59247574-59247593 | None:intergenic | 35.0% | |
| ATTCAGAAAGACAATTGACG+CGG | + | chr1_3:59247610-59247629 | None:intergenic | 35.0% | |
| ! | TCTGGAAAACCATTTTCTTC+TGG | - | chr1_3:59247861-59247880 | Msa0129340:intron | 35.0% |
| TGGCTTCTACCAACAAATTT+GGG | - | chr1_3:59247881-59247900 | Msa0129340:intron | 35.0% | |
| !! | AAGAAGCATCCCAAATTTGT+TGG | + | chr1_3:59247893-59247912 | None:intergenic | 35.0% |
| ! | ATTTGGGATGCTTCTTTATC+AGG | - | chr1_3:59247897-59247916 | Msa0129340:intron | 35.0% |
| TTACAATGGGTACAATAGCT+GGG | - | chr1_3:59247923-59247942 | Msa0129340:intron | 35.0% | |
| TGGAATTAAACCCTTACAAC+GGG | - | chr1_3:59247980-59247999 | Msa0129340:intron | 35.0% | |
| ATGACATAGCATCTTGACAA+GGG | + | chr1_3:59248067-59248086 | None:intergenic | 35.0% | |
| TCAAGATGCTATGTCATCAA+GGG | - | chr1_3:59248070-59248089 | Msa0129340:intron | 35.0% | |
| !! | AAATTAAGCTTTGGGACTTG+AGG | - | chr1_3:59248157-59248176 | Msa0129340:intron | 35.0% |
| !! | TGGTAATGGTTCATATATCC+AGG | - | chr1_3:59248254-59248273 | Msa0129340:intron | 35.0% |
| ! | TTCATATATCCAGGTTCTGA+GGG | - | chr1_3:59248263-59248282 | Msa0129340:intron | 35.0% |
| AAGGTACATGACTCATTCAA+TGG | - | chr1_3:59248311-59248330 | Msa0129340:intron | 35.0% | |
| CATGACTCATTCAATGGTTA+AGG | - | chr1_3:59248317-59248336 | Msa0129340:intron | 35.0% | |
| TTGTCTAGTATCCTTATTCC+AGG | - | chr1_3:59248408-59248427 | Msa0129340:CDS | 35.0% | |
| AGAACCCAACTTTGATTCAT+GGG | - | chr1_3:59248437-59248456 | Msa0129340:CDS | 35.0% | |
| CTCTGTTTAGGTGTTTCAAA+TGG | + | chr1_3:59248471-59248490 | None:intergenic | 35.0% | |
| ACCTAAACAGAGAAGAGAAA+AGG | - | chr1_3:59248479-59248498 | Msa0129340:intron | 35.0% | |
| ! | TCCTTTTCTCTTCTCTGTTT+AGG | + | chr1_3:59248483-59248502 | None:intergenic | 35.0% |
| GAAAACAAAAGGAAGAAGCA+AGG | - | chr1_3:59248665-59248684 | Msa0129340:intron | 35.0% | |
| !!! | GCAATTGCATCTTGCTTTTT+AGG | + | chr1_3:59248705-59248724 | None:intergenic | 35.0% |
| ! | TGAATTTTCTGCTCCAAGTA+AGG | + | chr1_3:59248741-59248760 | None:intergenic | 35.0% |
| AACTGCCAAAATCTTTACAG+CGG | - | chr1_3:59248811-59248830 | Msa0129340:intron | 35.0% | |
| ! | ACAAACCGCTGTAAAGATTT+TGG | + | chr1_3:59248819-59248838 | None:intergenic | 35.0% |
| !! | AAATCGATTTCTAAGGCCAA+AGG | + | chr1_3:59248958-59248977 | None:intergenic | 35.0% |
| ! | AGGTAAGGCAGATCAAATTT+TGG | - | chr1_3:59248992-59249011 | Msa0129340:five_prime_UTR | 35.0% |
| !! | TCAGTGGAAGGCTTGTTATT+TGG | + | chr1_3:59242316-59242335 | None:intergenic | 40.0% |
| ATTCATACCTGTTCAGTGGA+AGG | + | chr1_3:59242328-59242347 | None:intergenic | 40.0% | |
| ATGTCCTGCAAAACGATGTA+AGG | + | chr1_3:59242556-59242575 | None:intergenic | 40.0% | |
| !! | AGGTCAAAGAAGTATCTCAG+AGG | - | chr1_3:59242595-59242614 | Msa0129340:CDS | 40.0% |
| ATTTGTAAGCAACACCCACA+CGG | + | chr1_3:59242935-59242954 | None:intergenic | 40.0% | |
| AGGCTGATAACTAACCTTGT+AGG | - | chr1_3:59243170-59243189 | Msa0129340:CDS | 40.0% | |
| CATCTTGATCACAACCTACA+AGG | + | chr1_3:59243187-59243206 | None:intergenic | 40.0% | |
| CTTGTAGGTTGTGATCAAGA+TGG | - | chr1_3:59243185-59243204 | Msa0129340:CDS | 40.0% | |
| TAGCCGTTTCAGTAACTTCT+AGG | - | chr1_3:59243400-59243419 | Msa0129340:intron | 40.0% | |
| TCTATATAACCTCCTTCGCT+AGG | + | chr1_3:59243731-59243750 | None:intergenic | 40.0% | |
| TAGCGAAGGAGGTTATATAG+AGG | - | chr1_3:59243730-59243749 | Msa0129340:intron | 40.0% | |
| ATTAAGCAGGAGACAATAGC+CGG | - | chr1_3:59243779-59243798 | Msa0129340:intron | 40.0% | |
| GCTTGAGATATCTACTTCAC+CGG | + | chr1_3:59243801-59243820 | None:intergenic | 40.0% | |
| GAAATCAACCAATCCAACCT+TGG | - | chr1_3:59244029-59244048 | Msa0129340:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr1_3:59244516-59244535 | Msa0129340:CDS | 40.0% |
| !!! | TTTTGAAACGGAGGGAGTAT+TGG | - | chr1_3:59244524-59244543 | Msa0129340:CDS | 40.0% |
| ! | AAGAAGAAAGAGTGCATGAG+AGG | + | chr1_3:59244720-59244739 | None:intergenic | 40.0% |
| AGCACTGTTTGTGGCTATAA+TGG | + | chr1_3:59244966-59244985 | None:intergenic | 40.0% | |
| AGGAAAAAAGCTGACTGGAA+GGG | + | chr1_3:59245069-59245088 | None:intergenic | 40.0% | |
| ATGTTGGAATGTGAGTGCTT+GGG | - | chr1_3:59245221-59245240 | Msa0129340:intron | 40.0% | |
| AGCTTCTATCTACTTCTAGC+AGG | + | chr1_3:59245299-59245318 | None:intergenic | 40.0% | |
| CTGTGCTCAGGCATTTATTA+GGG | + | chr1_3:59245332-59245351 | None:intergenic | 40.0% | |
| ! | GTTTTGCAGCCAGATAACTT+GGG | + | chr1_3:59245485-59245504 | None:intergenic | 40.0% |
| TCCAGTATCAAGCTGCAAAA+AGG | - | chr1_3:59245667-59245686 | Msa0129340:intron | 40.0% | |
| ! | ACCTTTTTGCAGCTTGATAC+TGG | + | chr1_3:59245671-59245690 | None:intergenic | 40.0% |
| TTAAGCACTTGAACTGGTAG+TGG | + | chr1_3:59245706-59245725 | None:intergenic | 40.0% | |
| TGCACATAACCTTTCTTCAC+TGG | - | chr1_3:59246064-59246083 | Msa0129340:intron | 40.0% | |
| TAGACTTTACTTCAAGTGGC+CGG | - | chr1_3:59246168-59246187 | Msa0129340:intron | 40.0% | |
| TCATGTCCATAATTGCTAGG+TGG | + | chr1_3:59246220-59246239 | None:intergenic | 40.0% | |
| GATACTCATCATGCCTTCTT+TGG | - | chr1_3:59246364-59246383 | Msa0129340:intron | 40.0% | |
| !! | TGAAGATACGCAGCTCTAAA+TGG | + | chr1_3:59246396-59246415 | None:intergenic | 40.0% |
| ATGGGCCTTACATCTAATGT+CGG | - | chr1_3:59246553-59246572 | Msa0129340:intron | 40.0% | |
| TCTCTCCGACATTAGATGTA+AGG | + | chr1_3:59246561-59246580 | None:intergenic | 40.0% | |
| AAATGGTAGAACAGCAAACC+AGG | + | chr1_3:59246739-59246758 | None:intergenic | 40.0% | |
| TAGGGAAATAAGAGTGGCTT+AGG | - | chr1_3:59246802-59246821 | Msa0129340:intron | 40.0% | |
| AGGGAAATAAGAGTGGCTTA+GGG | - | chr1_3:59246803-59246822 | Msa0129340:intron | 40.0% | |
| ATGAATAACAGGCAGAGAAG+TGG | + | chr1_3:59246921-59246940 | None:intergenic | 40.0% | |
| GATGCGAAATGTGGTATTTC+GGG | + | chr1_3:59246981-59247000 | None:intergenic | 40.0% | |
| CCGTCCCGATTATATATGTA+TGG | + | chr1_3:59247304-59247323 | None:intergenic | 40.0% | |
| CAAGCAGTTAACCAACCTTA+AGG | + | chr1_3:59247342-59247361 | None:intergenic | 40.0% | |
| CTAGCACATATGTAACTGGA+TGG | + | chr1_3:59247453-59247472 | None:intergenic | 40.0% | |
| TCCAGTTACATATGTGCTAG+TGG | - | chr1_3:59247453-59247472 | Msa0129340:CDS | 40.0% | |
| CCAGTTACATATGTGCTAGT+GGG | - | chr1_3:59247454-59247473 | Msa0129340:CDS | 40.0% | |
| !! | CGATGAATGGTGGATAATAC+AGG | + | chr1_3:59247507-59247526 | None:intergenic | 40.0% |
| TATTATCCACCATTCATCGG+AGG | - | chr1_3:59247508-59247527 | Msa0129340:intron | 40.0% | |
| TTAATGCAACCTCCGATGAA+TGG | + | chr1_3:59247520-59247539 | None:intergenic | 40.0% | |
| !! | ACAAGCCTGATTTTGATGTG+TGG | - | chr1_3:59247566-59247585 | Msa0129340:intron | 40.0% |
| !! | TCTTTCTGAATACTGGCTTG+AGG | - | chr1_3:59247619-59247638 | Msa0129340:intron | 40.0% |
| ! | CTTTTCTTTTTCCAGGAGCA+TGG | - | chr1_3:59247817-59247836 | Msa0129340:intron | 40.0% |
| TGGTAGAAGCCAGAAGAAAA+TGG | + | chr1_3:59247873-59247892 | None:intergenic | 40.0% | |
| CTGGCTTCTACCAACAAATT+TGG | - | chr1_3:59247880-59247899 | Msa0129340:intron | 40.0% | |
| GTTACAATGGGTACAATAGC+TGG | - | chr1_3:59247922-59247941 | Msa0129340:intron | 40.0% | |
| ATAGCTGGGAAATTTCGAAC+TGG | - | chr1_3:59247937-59247956 | Msa0129340:intron | 40.0% | |
| ! | GGGAAATTTCGAACTGGTTT+AGG | - | chr1_3:59247943-59247962 | Msa0129340:intron | 40.0% |
| ! | TTTAGGACGCACAAATGTGA+TGG | - | chr1_3:59247960-59247979 | Msa0129340:intron | 40.0% |
| GGAATTAAACCCTTACAACG+GGG | - | chr1_3:59247981-59248000 | Msa0129340:intron | 40.0% | |
| AAGAAACAACCCCGTTGTAA+GGG | + | chr1_3:59247993-59248012 | None:intergenic | 40.0% | |
| AAAGAAACAACCCCGTTGTA+AGG | + | chr1_3:59247994-59248013 | None:intergenic | 40.0% | |
| !! | TACAACGGGGTTGTTTCTTT+AGG | - | chr1_3:59247994-59248013 | Msa0129340:intron | 40.0% |
| CTTCCACATAGTAACTGTAC+CGG | + | chr1_3:59248028-59248047 | None:intergenic | 40.0% | |
| TGACATAGCATCTTGACAAG+GGG | + | chr1_3:59248066-59248085 | None:intergenic | 40.0% | |
| GATGACATAGCATCTTGACA+AGG | + | chr1_3:59248068-59248087 | None:intergenic | 40.0% | |
| GTCAAGATGCTATGTCATCA+AGG | - | chr1_3:59248069-59248088 | Msa0129340:intron | 40.0% | |
| TCACTCAAATGGCCACTTAA+TGG | - | chr1_3:59248113-59248132 | Msa0129340:intron | 40.0% | |
| TTGGGACTTGAGGAAATTTG+AGG | - | chr1_3:59248167-59248186 | Msa0129340:intron | 40.0% | |
| ACCAAGCCATGCAAATACTT+TGG | - | chr1_3:59248203-59248222 | Msa0129340:intron | 40.0% | |
| ! | TCCAAAGTATTTGCATGGCT+TGG | + | chr1_3:59248207-59248226 | None:intergenic | 40.0% |
| GTTCATATATCCAGGTTCTG+AGG | - | chr1_3:59248262-59248281 | Msa0129340:intron | 40.0% | |
| ATGGTTAAGGGATACCAGAT+AGG | - | chr1_3:59248330-59248349 | Msa0129340:intron | 40.0% | |
| TCTAGGCATAGGACATTCAA+TGG | - | chr1_3:59248383-59248402 | Msa0129340:intron | 40.0% | |
| CTAGGCATAGGACATTCAAT+GGG | - | chr1_3:59248384-59248403 | Msa0129340:intron | 40.0% | |
| GAGAACCCAACTTTGATTCA+TGG | - | chr1_3:59248436-59248455 | Msa0129340:CDS | 40.0% | |
| GCAACCCATGAATCAAAGTT+GGG | + | chr1_3:59248444-59248463 | None:intergenic | 40.0% | |
| TGCAACCCATGAATCAAAGT+TGG | + | chr1_3:59248445-59248464 | None:intergenic | 40.0% | |
| ATGCAATTGCCAATGCAAAG+AGG | - | chr1_3:59248715-59248734 | Msa0129340:intron | 40.0% | |
| TTTGATCTGCCTTACCTGAA+AGG | + | chr1_3:59248989-59249008 | None:intergenic | 40.0% | |
| GTTGTGTGACTGGTAAACGT+AGG | + | chr1_3:59242132-59242151 | None:intergenic | 45.0% | |
| TCTGTGTTGTGTTGTGTGAC+TGG | + | chr1_3:59242142-59242161 | None:intergenic | 45.0% | |
| GTCACACAACACAACACAGA+CGG | - | chr1_3:59242142-59242161 | Msa0129340:three_prime_UTR | 45.0% | |
| GAGTTTCTTCCATCTTGCAC+CGG | + | chr1_3:59242276-59242295 | None:intergenic | 45.0% | |
| !! | GTGGAAGGCTTGTTATTTGG+AGG | + | chr1_3:59242313-59242332 | None:intergenic | 45.0% |
| TAACAAGCCTTCCACTGAAC+AGG | - | chr1_3:59242318-59242337 | Msa0129340:three_prime_UTR | 45.0% | |
| GTGGTGAATTATCGTTGAGC+CGG | - | chr1_3:59243012-59243031 | Msa0129340:CDS | 45.0% | |
| TGGTGAATTATCGTTGAGCC+GGG | - | chr1_3:59243013-59243032 | Msa0129340:CDS | 45.0% | |
| CACAATTGTGGGTAACTGCA+AGG | + | chr1_3:59243360-59243379 | None:intergenic | 45.0% | |
| TTGAGAACCAAGGGATCTAC+TGG | - | chr1_3:59243539-59243558 | Msa0129340:intron | 45.0% | |
| ACGAAATCCAGTAGATCCCT+TGG | + | chr1_3:59243549-59243568 | None:intergenic | 45.0% | |
| GGAGGTTATATAGAGGCTGA+AGG | - | chr1_3:59243737-59243756 | Msa0129340:intron | 45.0% | |
| TCACACATCCAAGGTTGGAT+TGG | + | chr1_3:59244040-59244059 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr1_3:59244515-59244534 | Msa0129340:CDS | 45.0% |
| ACACACACACACACACACAT+TGG | - | chr1_3:59244823-59244842 | Msa0129340:intron | 45.0% | |
| GAGGAAAAAAGCTGACTGGA+AGG | + | chr1_3:59245070-59245089 | None:intergenic | 45.0% | |
| ! | GAGAAAGGGGCTCTTTTCAA+GGG | + | chr1_3:59245101-59245120 | None:intergenic | 45.0% |
| ! | AGAGAAAGGGGCTCTTTTCA+AGG | + | chr1_3:59245102-59245121 | None:intergenic | 45.0% |
| !! | AGCGCTGGCAGAAAAACAAA+AGG | + | chr1_3:59245168-59245187 | None:intergenic | 45.0% |
| !! | TTGTTTTTCTGCCAGCGCTT+CGG | - | chr1_3:59245169-59245188 | Msa0129340:intron | 45.0% |
| GATGTTGGAATGTGAGTGCT+TGG | - | chr1_3:59245220-59245239 | Msa0129340:intron | 45.0% | |
| TGTTGGAATGTGAGTGCTTG+GGG | - | chr1_3:59245222-59245241 | Msa0129340:intron | 45.0% | |
| ATCAACCAGTGCTCAGACAT+TGG | - | chr1_3:59245263-59245282 | Msa0129340:intron | 45.0% | |
| ATCTACTTCTAGCAGGAGCT+GGG | + | chr1_3:59245292-59245311 | None:intergenic | 45.0% | |
| TATCTACTTCTAGCAGGAGC+TGG | + | chr1_3:59245293-59245312 | None:intergenic | 45.0% | |
| CCTGTGCTCAGGCATTTATT+AGG | + | chr1_3:59245333-59245352 | None:intergenic | 45.0% | |
| CCTAATAAATGCCTGAGCAC+AGG | - | chr1_3:59245330-59245349 | Msa0129340:intron | 45.0% | |
| TATGTAGGTAACCTGTGCTC+AGG | + | chr1_3:59245344-59245363 | None:intergenic | 45.0% | |
| TATGGCGAACCCAAGTTATC+TGG | - | chr1_3:59245473-59245492 | Msa0129340:intron | 45.0% | |
| ! | GGTTTTGCAGCCAGATAACT+TGG | + | chr1_3:59245486-59245505 | None:intergenic | 45.0% |
| GCAAAACCAAACCACTGTAC+TGG | - | chr1_3:59245498-59245517 | Msa0129340:intron | 45.0% | |
| AAACCAAACCACTGTACTGG+AGG | - | chr1_3:59245501-59245520 | Msa0129340:intron | 45.0% | |
| TACTTCAAGTGGCCGGTATA+TGG | - | chr1_3:59246175-59246194 | Msa0129340:intron | 45.0% | |
| GACCACCAATAGCCATATAC+CGG | + | chr1_3:59246190-59246209 | None:intergenic | 45.0% | |
| ! | TATGGCTATTGGTGGTCGTA+AGG | - | chr1_3:59246193-59246212 | Msa0129340:intron | 45.0% |
| ! | ATGGCTATTGGTGGTCGTAA+GGG | - | chr1_3:59246194-59246213 | Msa0129340:intron | 45.0% |
| TAAGGGCCACCTAGCAATTA+TGG | - | chr1_3:59246211-59246230 | Msa0129340:intron | 45.0% | |
| TGATGAATCTGAGCCTGATC+AGG | - | chr1_3:59246237-59246256 | Msa0129340:intron | 45.0% | |
| GATGAATCTGAGCCTGATCA+GGG | - | chr1_3:59246238-59246257 | Msa0129340:intron | 45.0% | |
| CTCATCATGCCTTCTTTGGA+CGG | - | chr1_3:59246368-59246387 | Msa0129340:intron | 45.0% | |
| TCATCATGCCTTCTTTGGAC+GGG | - | chr1_3:59246369-59246388 | Msa0129340:intron | 45.0% | |
| TAAATGGTCCCGTCCAAAGA+AGG | + | chr1_3:59246380-59246399 | None:intergenic | 45.0% | |
| AAGAGAAACTGTGCGTGATG+TGG | - | chr1_3:59246657-59246676 | Msa0129340:intron | 45.0% | |
| AAAAAAATGTCTGGGGGCAG+AGG | - | chr1_3:59246868-59246887 | Msa0129340:intron | 45.0% | |
| AAACCCTGTGAGATTGTTCG+CGG | - | chr1_3:59247158-59247177 | Msa0129340:intron | 45.0% | |
| ! | TTCGCGGCTTGATGTTTTCT+TGG | - | chr1_3:59247174-59247193 | Msa0129340:intron | 45.0% |
| CACAGAGCTTCATTGCCTTA+AGG | - | chr1_3:59247324-59247343 | Msa0129340:intron | 45.0% | |
| GAGCTTCATTGCCTTAAGGT+TGG | - | chr1_3:59247328-59247347 | Msa0129340:intron | 45.0% | |
| CCCACTAGCACATATGTAAC+TGG | + | chr1_3:59247457-59247476 | None:intergenic | 45.0% | |
| ! | AGTGTTGAGGCTTCAGTTTC+TGG | - | chr1_3:59247843-59247862 | Msa0129340:intron | 45.0% |
| GCTCTGGCATTTCACTCAAA+TGG | - | chr1_3:59248102-59248121 | Msa0129340:intron | 45.0% | |
| CTGGTGCACAGAACTATTCA+AGG | - | chr1_3:59248292-59248311 | Msa0129340:intron | 45.0% | |
| ATGCCTAGAACGTCTTCGTA+TGG | + | chr1_3:59248372-59248391 | None:intergenic | 45.0% | |
| ! | TACGAAGACGTTCTAGGCAT+AGG | - | chr1_3:59248372-59248391 | Msa0129340:intron | 45.0% |
| AGTATCCTTATTCCAGGAGC+AGG | - | chr1_3:59248414-59248433 | Msa0129340:CDS | 45.0% | |
| GCTAACTGCACAAGAGATAG+AGG | - | chr1_3:59248593-59248612 | Msa0129340:CDS | 45.0% | |
| ACAAGAGATAGAGGCTGAGA+TGG | - | chr1_3:59248602-59248621 | Msa0129340:CDS | 45.0% | |
| ACAAAAGGAAGAAGCAAGGC+TGG | - | chr1_3:59248669-59248688 | Msa0129340:intron | 45.0% | |
| CAAGTAAGGCCTCTTTGCAT+TGG | + | chr1_3:59248727-59248746 | None:intergenic | 45.0% | |
| CAATGCAAAGAGGCCTTACT+TGG | - | chr1_3:59248725-59248744 | Msa0129340:intron | 45.0% | |
| !!! | AAACAATTTTTTTTTTTTTT+TGG | - | chr1_3:59244486-59244505 | Msa0129340:intron | 5.0% |
| ACACAACACAACACAGACGG+AGG | - | chr1_3:59242145-59242164 | Msa0129340:three_prime_UTR | 50.0% | |
| ACAGAGAGAGAGGGAAAGTG+CGG | + | chr1_3:59242215-59242234 | None:intergenic | 50.0% | |
| ! | CTCTTTCTGGTGGAAGACGA+CGG | + | chr1_3:59242241-59242260 | None:intergenic | 50.0% |
| CAGCTGCAATCTCTTTCTGG+TGG | + | chr1_3:59242251-59242270 | None:intergenic | 50.0% | |
| GTGCAGCTGCAATCTCTTTC+TGG | + | chr1_3:59242254-59242273 | None:intergenic | 50.0% | |
| GAAAGAGATTGCAGCTGCAC+CGG | - | chr1_3:59242254-59242273 | Msa0129340:three_prime_UTR | 50.0% | |
| ATCTGCTAAAGCTGCTGCTC+AGG | - | chr1_3:59242800-59242819 | Msa0129340:CDS | 50.0% | |
| TGTGTGTGTGTGTTTCCGTG+TGG | - | chr1_3:59242917-59242936 | Msa0129340:CDS | 50.0% | |
| GTGTGTGTGTGTTTCCGTGT+GGG | - | chr1_3:59242918-59242937 | Msa0129340:CDS | 50.0% | |
| !! | CAGTGGATTATGCCTAGCGA+AGG | - | chr1_3:59243716-59243735 | Msa0129340:intron | 50.0% |
| TGGATTATGCCTAGCGAAGG+AGG | - | chr1_3:59243719-59243738 | Msa0129340:intron | 50.0% | |
| GAGTGCATGAGAGGACATCA+CGG | + | chr1_3:59244711-59244730 | None:intergenic | 50.0% | |
| GGCAGAGGAAAAAAGCTGAC+TGG | + | chr1_3:59245074-59245093 | None:intergenic | 50.0% | |
| !! | AAAGGGGCTCTTTTCAAGGG+AGG | + | chr1_3:59245098-59245117 | None:intergenic | 50.0% |
| CGCAACAAGCAAAGAACCAG+TGG | + | chr1_3:59245144-59245163 | None:intergenic | 50.0% | |
| TGACCTCCAGTACAGTGGTT+TGG | + | chr1_3:59245507-59245526 | None:intergenic | 50.0% | |
| GTATCTGACCTCCAGTACAG+TGG | + | chr1_3:59245512-59245531 | None:intergenic | 50.0% | |
| !! | GCACTTGAACTGGTAGTGGA+GGG | + | chr1_3:59245702-59245721 | None:intergenic | 50.0% |
| !! | AGCACTTGAACTGGTAGTGG+AGG | + | chr1_3:59245703-59245722 | None:intergenic | 50.0% |
| AGTGGCCGGTATATGGCTAT+TGG | - | chr1_3:59246182-59246201 | Msa0129340:intron | 50.0% | |
| GGTAGAACAGCAAACCAGGA+AGG | + | chr1_3:59246735-59246754 | None:intergenic | 50.0% | |
| AAGCCGCGAACAATCTCACA+GGG | + | chr1_3:59247164-59247183 | None:intergenic | 50.0% | |
| ATGCAACCTCCGATGAATGG+TGG | + | chr1_3:59247517-59247536 | None:intergenic | 50.0% | |
| TCAACACTGAACCATGCTCC+TGG | + | chr1_3:59247831-59247850 | None:intergenic | 50.0% | |
| ! | AGGAGCATGGTTCAGTGTTG+AGG | - | chr1_3:59247830-59247849 | Msa0129340:intron | 50.0% |
| GTTTCTTTAGGCCACTCAGC+CGG | - | chr1_3:59248006-59248025 | Msa0129340:intron | 50.0% | |
| !! | TAGTAACTGTACCGGCTGAG+TGG | + | chr1_3:59248020-59248039 | None:intergenic | 50.0% |
| CAGCCGGTACAGTTACTATG+TGG | - | chr1_3:59248022-59248041 | Msa0129340:intron | 50.0% | |
| TGAAATGCCAGAGCTGAGAC+TGG | + | chr1_3:59248096-59248115 | None:intergenic | 50.0% | |
| ! | CAAAAAGGCTTGCTTGCGTG+TGG | - | chr1_3:59248234-59248253 | Msa0129340:intron | 50.0% |
| CAGAAACATCCCTCAGAACC+TGG | + | chr1_3:59248275-59248294 | None:intergenic | 50.0% | |
| !! | CAGGTTCTGAGGGATGTTTC+TGG | - | chr1_3:59248273-59248292 | Msa0129340:intron | 50.0% |
| CGACCATACGAAGACGTTCT+AGG | - | chr1_3:59248366-59248385 | Msa0129340:intron | 50.0% | |
| GTTCTCCTGCTCCTGGAATA+AGG | + | chr1_3:59248422-59248441 | None:intergenic | 50.0% | |
| TCCACCTGAGACAATCATGC+TGG | - | chr1_3:59248527-59248546 | Msa0129340:intron | 50.0% | |
| TCCAGCATGATTGTCTCAGG+TGG | + | chr1_3:59248531-59248550 | None:intergenic | 50.0% | |
| GGATCCAGCATGATTGTCTC+AGG | + | chr1_3:59248534-59248553 | None:intergenic | 50.0% | |
| ATGCTGGATCCCAGCAAGAT+CGG | - | chr1_3:59248543-59248562 | Msa0129340:intron | 50.0% | |
| GTGCGGCGGTGAAGAAGAAA+GGG | + | chr1_3:59242198-59242217 | None:intergenic | 55.0% | |
| AGTGCGGCGGTGAAGAAGAA+AGG | + | chr1_3:59242199-59242218 | None:intergenic | 55.0% | |
| AGCAAACATCGAGCTTGGCC+CGG | + | chr1_3:59243034-59243053 | None:intergenic | 55.0% | |
| GTGCCAGCAAACATCGAGCT+TGG | + | chr1_3:59243039-59243058 | None:intergenic | 55.0% | |
| !! | CTTTTCAAGGGAGGAGGCAG+AGG | + | chr1_3:59245089-59245108 | None:intergenic | 55.0% |
| TACTTCTAGCAGGAGCTGGG+AGG | + | chr1_3:59245289-59245308 | None:intergenic | 55.0% | |
| GGCCGGTATATGGCTATTGG+TGG | - | chr1_3:59246185-59246204 | Msa0129340:intron | 55.0% | |
| GTACCTGAAGCTCCCTGATC+AGG | + | chr1_3:59246253-59246272 | None:intergenic | 55.0% | |
| CAAGCCGCGAACAATCTCAC+AGG | + | chr1_3:59247165-59247184 | None:intergenic | 55.0% | |
| GTGCCCACTAGTGGAACACT+CGG | - | chr1_3:59247643-59247662 | Msa0129340:intron | 55.0% | |
| GAGCCGAGTGTTCCACTAGT+GGG | + | chr1_3:59247649-59247668 | None:intergenic | 55.0% | |
| TGAGCCGAGTGTTCCACTAG+TGG | + | chr1_3:59247650-59247669 | None:intergenic | 55.0% | |
| ACAAGGGGAGACGAACTGGT+TGG | + | chr1_3:59248051-59248070 | None:intergenic | 55.0% | |
| CTTGACAAGGGGAGACGAAC+TGG | + | chr1_3:59248055-59248074 | None:intergenic | 55.0% | |
| GGCCACTTAATGGCTACTGC+CGG | - | chr1_3:59248123-59248142 | Msa0129340:intron | 55.0% | |
| GCCACTTAATGGCTACTGCC+GGG | - | chr1_3:59248124-59248143 | Msa0129340:intron | 55.0% | |
| CCACTTAATGGCTACTGCCG+GGG | - | chr1_3:59248125-59248144 | Msa0129340:intron | 55.0% | |
| ! | GGCTTGCTTGCGTGTGGTAA+TGG | - | chr1_3:59248240-59248259 | Msa0129340:intron | 55.0% |
| AAGTTGGGTTCTCCTGCTCC+TGG | + | chr1_3:59248429-59248448 | None:intergenic | 55.0% | |
| GGATCCCAGCAAGATCGGTA+CGG | - | chr1_3:59248548-59248567 | Msa0129340:intron | 55.0% | |
| ! | CTCACCGTACCGATCTTGCT+GGG | + | chr1_3:59248555-59248574 | None:intergenic | 55.0% |
| ! | TCTCACCGTACCGATCTTGC+TGG | + | chr1_3:59248556-59248575 | None:intergenic | 55.0% |
| AGCTGCTGTGGAAGCTGTCA+AGG | - | chr1_3:59248626-59248645 | Msa0129340:CDS | 55.0% | |
| GCTGCTGTGGAAGCTGTCAA+GGG | - | chr1_3:59248627-59248646 | Msa0129340:CDS | 55.0% | |
| ! | GAGAGAGAGGGAAAGTGCGG+CGG | + | chr1_3:59242212-59242231 | None:intergenic | 60.0% |
| CGACGGTGCACAGAGAGAGA+GGG | + | chr1_3:59242224-59242243 | None:intergenic | 60.0% | |
| ACGACGGTGCACAGAGAGAG+AGG | + | chr1_3:59242225-59242244 | None:intergenic | 60.0% | |
| AGCTGCTGCTCAGGCTGAGA+AGG | - | chr1_3:59242809-59242828 | Msa0129340:CDS | 60.0% | |
| GGGCCAAGCTCGATGTTTGC+TGG | - | chr1_3:59243033-59243052 | Msa0129340:CDS | 60.0% | |
| !! | GGGGCTCTTTTCAAGGGAGG+AGG | + | chr1_3:59245095-59245114 | None:intergenic | 60.0% |
| TCAACCACTCACCGAAGCGC+TGG | + | chr1_3:59245183-59245202 | None:intergenic | 60.0% | |
| GGAGGCCAATGTCTGAGCAC+TGG | + | chr1_3:59245271-59245290 | None:intergenic | 60.0% | |
| GAGCCTGATCAGGGAGCTTC+AGG | - | chr1_3:59246247-59246266 | Msa0129340:intron | 60.0% | |
| !! | GCTTGAGGAGTGCCCACTAG+TGG | - | chr1_3:59247634-59247653 | Msa0129340:intron | 60.0% |
| TCAAGGGCCAGTCTCAGCTC+TGG | - | chr1_3:59248086-59248105 | Msa0129340:intron | 60.0% | |
| CCCCGGCAGTAGCCATTAAG+TGG | + | chr1_3:59248128-59248147 | None:intergenic | 60.0% | |
| GGCTGAGATGGAAGCTGCTG+TGG | - | chr1_3:59248614-59248633 | Msa0129340:CDS | 60.0% | |
| ! | GCAGCTGCACCGGTGCAAGA+TGG | - | chr1_3:59242264-59242283 | Msa0129340:three_prime_UTR | 65.0% |
| TCTGCCAGCGCTTCGGTGAG+TGG | - | chr1_3:59245176-59245195 | Msa0129340:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 59242123 | 59249103 | 59242123 | ID=Msa0129340;Name=Msa0129340 |
| chr1_3 | mRNA | 59242123 | 59249103 | 59242123 | ID=Msa0129340-mRNA-1;Parent=Msa0129340;Name=Msa0129340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=160|1|1|1|1|1|8|243|536 |
| chr1_3 | exon | 59242123 | 59243394 | 59242123 | ID=Msa0129340-mRNA-1:exon:19256;Parent=Msa0129340-mRNA-1 |
| chr1_3 | exon | 59243881 | 59243929 | 59243881 | ID=Msa0129340-mRNA-1:exon:19255;Parent=Msa0129340-mRNA-1 |
| chr1_3 | exon | 59244504 | 59244571 | 59244504 | ID=Msa0129340-mRNA-1:exon:19254;Parent=Msa0129340-mRNA-1 |
| chr1_3 | exon | 59244958 | 59245076 | 59244958 | ID=Msa0129340-mRNA-1:exon:19253;Parent=Msa0129340-mRNA-1 |
| chr1_3 | exon | 59247375 | 59247507 | 59247375 | ID=Msa0129340-mRNA-1:exon:19252;Parent=Msa0129340-mRNA-1 |
| chr1_3 | exon | 59248396 | 59248485 | 59248396 | ID=Msa0129340-mRNA-1:exon:19251;Parent=Msa0129340-mRNA-1 |
| chr1_3 | exon | 59248590 | 59248655 | 59248590 | ID=Msa0129340-mRNA-1:exon:19250;Parent=Msa0129340-mRNA-1 |
| chr1_3 | exon | 59248887 | 59249103 | 59248887 | ID=Msa0129340-mRNA-1:exon:19249;Parent=Msa0129340-mRNA-1 |
| chr1_3 | five_prime_UTR | 59248944 | 59249103 | 59248944 | ID=Msa0129340-mRNA-1:five_prime_utr;Parent=Msa0129340-mRNA-1 |
| chr1_3 | CDS | 59248887 | 59248943 | 59248887 | ID=Msa0129340-mRNA-1:cds;Parent=Msa0129340-mRNA-1 |
| chr1_3 | CDS | 59248590 | 59248655 | 59248590 | ID=Msa0129340-mRNA-1:cds;Parent=Msa0129340-mRNA-1 |
| chr1_3 | CDS | 59248396 | 59248485 | 59248396 | ID=Msa0129340-mRNA-1:cds;Parent=Msa0129340-mRNA-1 |
| chr1_3 | CDS | 59247375 | 59247507 | 59247375 | ID=Msa0129340-mRNA-1:cds;Parent=Msa0129340-mRNA-1 |
| chr1_3 | CDS | 59244958 | 59245076 | 59244958 | ID=Msa0129340-mRNA-1:cds;Parent=Msa0129340-mRNA-1 |
| chr1_3 | CDS | 59244504 | 59244571 | 59244504 | ID=Msa0129340-mRNA-1:cds;Parent=Msa0129340-mRNA-1 |
| chr1_3 | CDS | 59243881 | 59243929 | 59243881 | ID=Msa0129340-mRNA-1:cds;Parent=Msa0129340-mRNA-1 |
| chr1_3 | CDS | 59242366 | 59243394 | 59242366 | ID=Msa0129340-mRNA-1:cds;Parent=Msa0129340-mRNA-1 |
| chr1_3 | three_prime_UTR | 59242123 | 59242365 | 59242123 | ID=Msa0129340-mRNA-1:three_prime_utr;Parent=Msa0129340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
