AlfalfaGEDB | Msa0586420

M. sativa cultivar zhongmu-4 / Msa0586420

KEGG: K02937
GO: GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030312 GO:0031090 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF08079.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586420	XP_013454579.1	90.909	253	6	2	1	246	1	243	8.61e-162	457

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586420	sp\|Q9LHP1\|RL74_ARATH	78.800	250	36	2	4	246	5	244	8.67e-143	402

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002790	Msa0586420	0.804881	1.746329e-49	-8.615850e-47
Msa0022970	Msa0586420	0.802816	4.687483e-49	-8.615850e-47
Msa0032810	Msa0586420	0.827985	1.156149e-54	-8.615850e-47
Msa0047160	Msa0586420	0.817121	3.886910e-52	-8.615850e-47
Msa0048180	Msa0586420	0.816751	4.705484e-52	-8.615850e-47
Msa0086750	Msa0586420	0.800447	1.435401e-48	-8.615850e-47
Msa0116130	Msa0586420	0.802345	5.862431e-49	-8.615850e-47
Msa0116670	Msa0586420	0.826420	2.739939e-54	-8.615850e-47
Msa0118710	Msa0586420	0.810156	1.326101e-50	-8.615850e-47
Msa0129340	Msa0586420	0.825242	5.215070e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586420	MtrunA17_Chr4g0002321	90.909	253	6	2	1	246	1	243	7.92e-166	457
Msa0586420	MtrunA17_Chr1g0155331	80.478	251	32	2	3	246	4	244	1.61e-147	411
Msa0586420	MtrunA17_Chr2g0298841	79.681	251	34	2	3	246	4	244	8.32e-146	407
Msa0586420	MtrunA17_Chr7g0237701	43.265	245	121	3	9	246	13	246	2.73e-65	203
Msa0586420	MtrunA17_Chr1g0155311	91.667	60	5	0	177	236	3	62	2.83e-36	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0586420	AT3G13580.5	78.800	250	36	2	4	246	5	244	8.82e-144	402
Msa0586420	AT3G13580.4	78.800	250	36	2	4	246	5	244	8.82e-144	402
Msa0586420	AT3G13580.2	78.800	250	36	2	4	246	5	244	8.82e-144	402
Msa0586420	AT3G13580.3	78.800	250	36	2	4	246	5	244	8.82e-144	402
Msa0586420	AT3G13580.1	78.800	250	36	2	4	246	5	244	8.82e-144	402
Msa0586420	AT3G13580.7	78.800	250	36	2	4	246	5	244	8.82e-144	402
Msa0586420	AT3G13580.8	78.800	250	36	2	4	246	5	244	8.82e-144	402
Msa0586420	AT3G13580.6	78.800	250	36	2	4	246	5	244	8.82e-144	402
Msa0586420	AT3G13580.9	78.800	250	36	2	4	246	5	244	8.82e-144	402
Msa0586420	AT2G01250.1	79.200	250	35	2	4	246	3	242	1.50e-141	396

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Find 71 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATGAACATGTTGCACA+GGG	0.654102	4_2:-7596128	Msa0586420:CDS
AAGAGGAACCACTATGTTGA+AGG	0.523907	4_2:-7595669	Msa0586420:CDS
AAGCGTGAGGCTAAGCTGAA+AGG	0.580752	4_2:-7597363	Msa0586420:CDS
AAGCTTAAGGCTCCATTGGG+TGG	0.532905	4_2:-7595702	Msa0586420:CDS
AATGACTCTGCAGGTGCAAA+GGG	0.483245	4_2:+7597944	None:intergenic
AATGGAGCCTTAAGCTTGAA+CGG	0.593439	4_2:+7595708	None:intergenic
ACATACCCATAAGTCACATA+AGG	0.533172	4_2:+7596100	None:intergenic
ACCCAAATTTGAAGAGTGTA+AGG	0.411117	4_2:-7595994	Msa0586420:CDS
ACCGTAAGCTGATCTATGGC+AGG	0.465539	4_2:-7597572	Msa0586420:CDS
AGCAGAACAGGGAAGAACAA+TGG	0.564767	4_2:-7597647	Msa0586420:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAGAGTGAAAGAGAAATT+AGG	+	chr4_2:7595424-7595443	None:intergenic	30.0%
TTGTTTATTATTCGCATACG+AGG	-	chr4_2:7596010-7596029	Msa0586420:intron	30.0%
TGTTTATTATTCGCATACGA+GGG	-	chr4_2:7596011-7596030	Msa0586420:intron	30.0%
AATTAAGTGTAGTAGAGATG+AGG	-	chr4_2:7596108-7596127	Msa0586420:CDS	30.0%
TGATAAAGACTAGACAAGAT+AGG	-	chr4_2:7596148-7596167	Msa0586420:CDS	30.0%
GAAACTAGACTTATGTGATT+TGG	-	chr4_2:7596235-7596254	Msa0586420:intron	30.0%
TGAAACAATTGAGACGTAAA+TGG	-	chr4_2:7596617-7596636	Msa0586420:intron	30.0%
AAACATCTAAGAAGACAACT+GGG	+	chr4_2:7596818-7596837	None:intergenic	30.0%
AAAACATCTAAGAAGACAAC+TGG	+	chr4_2:7596819-7596838	None:intergenic	30.0%
ATGAATCATAGACTTCTCAA+AGG	+	chr4_2:7597051-7597070	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	7595319	7598022	7595319	ID=Msa0586420;Name=Msa0586420
chr4_2	mRNA	7595319	7598022	7595319	ID=Msa0586420-mRNA-1;Parent=Msa0586420;Name=Msa0586420-mRNA-1;_AED=0.10;_eAED=0.10;_QI=95\|0.66\|0.71\|1\|1\|0.85\|7\|292\|246
chr4_2	exon	7595319	7595826	7595319	ID=Msa0586420-mRNA-1:exon:2007;Parent=Msa0586420-mRNA-1
chr4_2	exon	7595916	7596018	7595916	ID=Msa0586420-mRNA-1:exon:2006;Parent=Msa0586420-mRNA-1
chr4_2	exon	7596106	7596215	7596106	ID=Msa0586420-mRNA-1:exon:2005;Parent=Msa0586420-mRNA-1
chr4_2	exon	7596408	7596465	7596408	ID=Msa0586420-mRNA-1:exon:2004;Parent=Msa0586420-mRNA-1
chr4_2	exon	7597330	7597406	7597330	ID=Msa0586420-mRNA-1:exon:2003;Parent=Msa0586420-mRNA-1
chr4_2	exon	7597539	7597717	7597539	ID=Msa0586420-mRNA-1:exon:2002;Parent=Msa0586420-mRNA-1
chr4_2	exon	7597930	7598022	7597930	ID=Msa0586420-mRNA-1:exon:2001;Parent=Msa0586420-mRNA-1
chr4_2	five_prime_UTR	7597930	7598022	7597930	ID=Msa0586420-mRNA-1:five_prime_utr;Parent=Msa0586420-mRNA-1
chr4_2	five_prime_UTR	7597716	7597717	7597716	ID=Msa0586420-mRNA-1:five_prime_utr;Parent=Msa0586420-mRNA-1
chr4_2	CDS	7597539	7597715	7597539	ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1
chr4_2	CDS	7597330	7597406	7597330	ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1
chr4_2	CDS	7596408	7596465	7596408	ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1
chr4_2	CDS	7596106	7596215	7596106	ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1
chr4_2	CDS	7595916	7596018	7595916	ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1
chr4_2	CDS	7595611	7595826	7595611	ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1
chr4_2	three_prime_UTR	7595319	7595610	7595319	ID=Msa0586420-mRNA-1:three_prime_utr;Parent=Msa0586420-mRNA-1

Gene Sequence

>Msa0586420

ATGGGTGAAGAAGTGAAATCTATTGTTCCTGAGTCTGTGTTGAAGAAGCAGAACAGGGAAGAACAATGGGCTTTGGCTAAAACTCAAGAATTTGAAGCTGCTAAGAAGAAAAGAGCTGAGAACCGTAAGCTGATCTATGGCAGGGCTAAGCAGTATTCTCAAGAGTATGAGGATAAGGAAAGAGAGTTGATTAGTTTGAAGCGTGAGGCTAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCCAAGCTCTTTATTAATGCCATGGACCCCAAGACAAGGAAAATTTTGCAACTGTTTCGATTGAGACAGTTTGGTGATCCTTATGTGTTTGCTCAACAGATTTTCAATGGTGTTTTCCTTAAAGTTAATAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGGATACCCAAATTTGAAGAGTGTAAGGGAACTCATCTACAAACGTGGGTATGGAAAGCTAGACAGGCAGCGAACTCCTCTCACTGACAACTCAATTATTGAGCAGGGACTGGGAAAGCATGGTATCCTATGCGTTGAAGATCTTATCCACGAGATCTTGACTGTTGGACCACATTTCAAGGAAGCAAACAACTTCCTTTGGCCGTTCAAGCTTAAGGCTCCATTGGGTGGCTTAAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGATGCTGGAAACCGTGAAAATTACATCAATGAGCTCATCAGGAGAATGAATTAA

Protein sequence

>Msa0586420

MGEEVKSIVPESVLKKQNREEQWALAKTQEFEAAKKKRAENRKLIYGRAKQYSQEYEDKERELISLKREAKLKGGFYVDPEAKLFINAMDPKTRKILQLFRLRQFGDPYVFAQQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDRQRTPLTDNSIIEQGLGKHGILCVEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN*