Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0586420 | XP_013454579.1 | 90.909 | 253 | 6 | 2 | 1 | 246 | 1 | 243 | 8.61e-162 | 457 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0586420 | sp|Q9LHP1|RL74_ARATH | 78.800 | 250 | 36 | 2 | 4 | 246 | 5 | 244 | 8.67e-143 | 402 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002790 | Msa0586420 | 0.804881 | 1.746329e-49 | -8.615850e-47 |
Msa0022970 | Msa0586420 | 0.802816 | 4.687483e-49 | -8.615850e-47 |
Msa0032810 | Msa0586420 | 0.827985 | 1.156149e-54 | -8.615850e-47 |
Msa0047160 | Msa0586420 | 0.817121 | 3.886910e-52 | -8.615850e-47 |
Msa0048180 | Msa0586420 | 0.816751 | 4.705484e-52 | -8.615850e-47 |
Msa0086750 | Msa0586420 | 0.800447 | 1.435401e-48 | -8.615850e-47 |
Msa0116130 | Msa0586420 | 0.802345 | 5.862431e-49 | -8.615850e-47 |
Msa0116670 | Msa0586420 | 0.826420 | 2.739939e-54 | -8.615850e-47 |
Msa0118710 | Msa0586420 | 0.810156 | 1.326101e-50 | -8.615850e-47 |
Msa0129340 | Msa0586420 | 0.825242 | 5.215070e-54 | -8.615850e-47 |
Msa0133540 | Msa0586420 | 0.829371 | 5.342976e-55 | -8.615850e-47 |
Msa0172930 | Msa0586420 | 0.811867 | 5.646446e-51 | -8.615850e-47 |
Msa0173530 | Msa0586420 | 0.825910 | 3.623050e-54 | -8.615850e-47 |
Msa0181490 | Msa0586420 | 0.814381 | 1.585755e-51 | -8.615850e-47 |
Msa0188350 | Msa0586420 | 0.809801 | 1.581224e-50 | -8.615850e-47 |
Msa0202020 | Msa0586420 | 0.801299 | 9.612721e-49 | -8.615850e-47 |
Msa0218830 | Msa0586420 | 0.830819 | 2.369729e-55 | -8.615850e-47 |
Msa0230490 | Msa0586420 | 0.815015 | 1.147578e-51 | -8.615850e-47 |
Msa0230520 | Msa0586420 | 0.827287 | 1.700196e-54 | -8.615850e-47 |
Msa0393370 | Msa0586420 | 0.826179 | 3.127242e-54 | -8.615850e-47 |
Msa0437020 | Msa0586420 | 0.845110 | 4.980954e-59 | -8.615850e-47 |
Msa0443390 | Msa0586420 | 0.842552 | 2.411492e-58 | -8.615850e-47 |
Msa0258390 | Msa0586420 | 0.809985 | 1.443699e-50 | -8.615850e-47 |
Msa0262480 | Msa0586420 | 0.817266 | 3.604922e-52 | -8.615850e-47 |
Msa0289580 | Msa0586420 | 0.801838 | 7.455120e-49 | -8.615850e-47 |
Msa0289610 | Msa0586420 | 0.804729 | 1.878000e-49 | -8.615850e-47 |
Msa0297610 | Msa0586420 | 0.812374 | 4.378872e-51 | -8.615850e-47 |
Msa0306690 | Msa0586420 | 0.825048 | 5.795589e-54 | -8.615850e-47 |
Msa0317910 | Msa0586420 | 0.802425 | 5.645960e-49 | -8.615850e-47 |
Msa0348830 | Msa0586420 | 0.827570 | 1.454642e-54 | -8.615850e-47 |
Msa0531650 | Msa0586420 | 0.815192 | 1.048655e-51 | -8.615850e-47 |
Msa0581110 | Msa0586420 | 0.802864 | 4.582003e-49 | -8.615850e-47 |
Msa0584260 | Msa0586420 | 0.807417 | 5.107738e-50 | -8.615850e-47 |
Msa0586420 | Msa0588360 | 0.810142 | 1.335250e-50 | -8.615850e-47 |
Msa0586420 | Msa0615580 | 0.866767 | 2.240487e-65 | -8.615850e-47 |
Msa0586420 | Msa0664560 | 0.885996 | 5.019590e-72 | -8.615850e-47 |
Msa0586420 | Msa0666230 | 0.832353 | 9.925140e-56 | -8.615850e-47 |
Msa0586420 | Msa0698780 | 0.805063 | 1.599832e-49 | -8.615850e-47 |
Msa0586420 | Msa0729200 | 0.814574 | 1.437517e-51 | -8.615850e-47 |
Msa0586420 | Msa0746960 | 0.837586 | 4.764218e-57 | -8.615850e-47 |
Msa0586420 | Msa0769590 | 0.821435 | 4.044222e-53 | -8.615850e-47 |
Msa0586420 | Msa0806880 | 0.840868 | 6.710054e-58 | -8.615850e-47 |
Msa0586420 | Msa0953310 | 0.804381 | 2.220563e-49 | -8.615850e-47 |
Msa0586420 | Msa0958000 | 0.800088 | 1.697837e-48 | -8.615850e-47 |
Msa0586420 | Msa1012740 | 0.812199 | 4.780136e-51 | -8.615850e-47 |
Msa0586420 | Msa1019240 | 0.815984 | 6.985868e-52 | -8.615850e-47 |
Msa0586420 | Msa1019260 | 0.815917 | 7.231999e-52 | -8.615850e-47 |
Msa0586420 | Msa1021520 | 0.813630 | 2.322400e-51 | -8.615850e-47 |
Msa0586420 | Msa1039520 | 0.804031 | 2.625519e-49 | -8.615850e-47 |
Msa0586420 | Msa1060260 | 0.806606 | 7.580283e-50 | -8.615850e-47 |
Msa0586420 | Msa1072710 | 0.835572 | 1.552307e-56 | -8.615850e-47 |
Msa0586420 | Msa1104210 | 0.825160 | 5.454599e-54 | -8.615850e-47 |
Msa0586420 | Msa1123770 | 0.844972 | 5.426978e-59 | -8.615850e-47 |
Msa0586420 | Msa1126830 | 0.804717 | 1.889405e-49 | -8.615850e-47 |
Msa0586420 | Msa1165780 | 0.837433 | 5.214548e-57 | -8.615850e-47 |
Msa0586420 | Msa1166870 | 0.801437 | 9.008535e-49 | -8.615850e-47 |
Msa0586420 | Msa1169910 | 0.840308 | 9.403400e-58 | -8.615850e-47 |
Msa0586420 | Msa1262890 | 0.820915 | 5.329956e-53 | -8.615850e-47 |
Msa0586420 | Msa1265630 | 0.819318 | 1.236893e-52 | -8.615850e-47 |
Msa0586420 | Msa1275680 | 0.842008 | 3.360510e-58 | -8.615850e-47 |
Msa0586420 | Msa1277260 | 0.801384 | 9.235037e-49 | -8.615850e-47 |
Msa0586420 | Msa1299590 | 0.819014 | 1.450383e-52 | -8.615850e-47 |
Msa0586420 | Msa1302380 | 0.811270 | 7.612500e-51 | -8.615850e-47 |
Msa0586420 | Msa1315890 | 0.807982 | 3.873667e-50 | -8.615850e-47 |
Msa0586420 | Msa1332250 | 0.815218 | 1.034896e-51 | -8.615850e-47 |
Msa0586420 | Msa1332590 | 0.818179 | 2.243173e-52 | -8.615850e-47 |
Msa0586420 | Msa1351540 | 0.823863 | 1.101653e-53 | -8.615850e-47 |
Msa0586420 | Msa1369190 | 0.805030 | 1.624771e-49 | -8.615850e-47 |
Msa0586420 | Msa1385720 | 0.843555 | 1.304048e-58 | -8.615850e-47 |
Msa0586420 | Msa1411970 | 0.800723 | 1.260694e-48 | -8.615850e-47 |
Msa0586420 | Msa1413500 | 0.833230 | 6.010048e-56 | -8.615850e-47 |
Msa0586420 | Msa1426370 | 0.815495 | 8.980101e-52 | -8.615850e-47 |
Msa0586420 | Msa1434090 | 0.839564 | 1.469299e-57 | -8.615850e-47 |
Msa0586420 | Msa1435390 | 0.801375 | 9.276267e-49 | -8.615850e-47 |
Msa0586420 | Msa1465260 | 0.809093 | 2.243733e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0586420 | MtrunA17_Chr4g0002321 | 90.909 | 253 | 6 | 2 | 1 | 246 | 1 | 243 | 7.92e-166 | 457 |
Msa0586420 | MtrunA17_Chr1g0155331 | 80.478 | 251 | 32 | 2 | 3 | 246 | 4 | 244 | 1.61e-147 | 411 |
Msa0586420 | MtrunA17_Chr2g0298841 | 79.681 | 251 | 34 | 2 | 3 | 246 | 4 | 244 | 8.32e-146 | 407 |
Msa0586420 | MtrunA17_Chr7g0237701 | 43.265 | 245 | 121 | 3 | 9 | 246 | 13 | 246 | 2.73e-65 | 203 |
Msa0586420 | MtrunA17_Chr1g0155311 | 91.667 | 60 | 5 | 0 | 177 | 236 | 3 | 62 | 2.83e-36 | 122 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0586420 | AT3G13580.5 | 78.800 | 250 | 36 | 2 | 4 | 246 | 5 | 244 | 8.82e-144 | 402 |
Msa0586420 | AT3G13580.4 | 78.800 | 250 | 36 | 2 | 4 | 246 | 5 | 244 | 8.82e-144 | 402 |
Msa0586420 | AT3G13580.2 | 78.800 | 250 | 36 | 2 | 4 | 246 | 5 | 244 | 8.82e-144 | 402 |
Msa0586420 | AT3G13580.3 | 78.800 | 250 | 36 | 2 | 4 | 246 | 5 | 244 | 8.82e-144 | 402 |
Msa0586420 | AT3G13580.1 | 78.800 | 250 | 36 | 2 | 4 | 246 | 5 | 244 | 8.82e-144 | 402 |
Msa0586420 | AT3G13580.7 | 78.800 | 250 | 36 | 2 | 4 | 246 | 5 | 244 | 8.82e-144 | 402 |
Msa0586420 | AT3G13580.8 | 78.800 | 250 | 36 | 2 | 4 | 246 | 5 | 244 | 8.82e-144 | 402 |
Msa0586420 | AT3G13580.6 | 78.800 | 250 | 36 | 2 | 4 | 246 | 5 | 244 | 8.82e-144 | 402 |
Msa0586420 | AT3G13580.9 | 78.800 | 250 | 36 | 2 | 4 | 246 | 5 | 244 | 8.82e-144 | 402 |
Msa0586420 | AT2G01250.1 | 79.200 | 250 | 35 | 2 | 4 | 246 | 3 | 242 | 1.50e-141 | 396 |
Msa0586420 | AT2G44120.1 | 76.000 | 250 | 43 | 2 | 4 | 246 | 3 | 242 | 8.05e-136 | 382 |
Msa0586420 | AT2G44120.2 | 76.000 | 250 | 43 | 2 | 4 | 246 | 8 | 247 | 8.71e-136 | 382 |
Msa0586420 | AT2G01250.2 | 71.892 | 185 | 35 | 2 | 4 | 181 | 3 | 177 | 5.73e-86 | 253 |
Msa0586420 | AT1G80750.1 | 38.976 | 254 | 135 | 5 | 3 | 246 | 4 | 247 | 1.93e-50 | 165 |
Find 71 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTTGCTTTATTAACTTTA+AGG | 0.075401 | 4_2:+7596146 | None:intergenic |
TCCCTTACACTCTTCAAATT+TGG | 0.097727 | 4_2:+7595992 | None:intergenic |
CAATTGGGTATCTGAAATTT+TGG | 0.126096 | 4_2:-7595522 | Msa0586420:three_prime_UTR |
GTTGAGCCTTATGTGACTTA+TGG | 0.277993 | 4_2:-7596106 | Msa0586420:CDS |
CCCTTACACTCTTCAAATTT+GGG | 0.292487 | 4_2:+7595993 | None:intergenic |
GGCTTTAGATCAAGATCAAT+TGG | 0.333078 | 4_2:-7595538 | Msa0586420:three_prime_UTR |
TTGAGCCTTATGTGACTTAT+GGG | 0.362158 | 4_2:-7596105 | Msa0586420:intron |
CTGTGTTGAAGAAGCAGAAC+AGG | 0.363263 | 4_2:-7597659 | Msa0586420:CDS |
CCTTTGGCCGTTCAAGCTTA+AGG | 0.366667 | 4_2:-7595715 | Msa0586420:CDS |
AGGAAGCAAACAACTTCCTT+TGG | 0.396409 | 4_2:-7595731 | Msa0586420:CDS |
GACTGTTGGACCACATTTCA+AGG | 0.408463 | 4_2:-7595751 | Msa0586420:CDS |
ACCCAAATTTGAAGAGTGTA+AGG | 0.411117 | 4_2:-7595994 | Msa0586420:CDS |
ATTACATCAATGAGCTCATC+AGG | 0.421060 | 4_2:-7595623 | Msa0586420:CDS |
CTCATCTACAAACGTGGGTA+TGG | 0.426956 | 4_2:-7595968 | Msa0586420:CDS |
TTTCCTTGTCTTGGGGTCCA+TGG | 0.427816 | 4_2:+7596435 | None:intergenic |
GAGAACCGTAAGCTGATCTA+TGG | 0.446007 | 4_2:-7597576 | Msa0586420:CDS |
GTTCAAGCTTAAGGCTCCAT+TGG | 0.447908 | 4_2:-7595706 | Msa0586420:CDS |
TTCTCAAGAGTATGAGGATA+AGG | 0.453623 | 4_2:-7597538 | Msa0586420:intron |
TATGTTGAAGGCGGTGATGC+TGG | 0.455644 | 4_2:-7595657 | Msa0586420:CDS |
GGAAGGTTTGTGAATAAGTA+GGG | 0.456126 | 4_2:+7597978 | None:intergenic |
ATCTGTTGAGCAAACACATA+AGG | 0.459436 | 4_2:+7596184 | None:intergenic |
CAGGGAAGAACAATGGGCTT+TGG | 0.464957 | 4_2:-7597640 | Msa0586420:CDS |
ACCGTAAGCTGATCTATGGC+AGG | 0.465539 | 4_2:-7597572 | Msa0586420:CDS |
GTGGGTATGGAAAGCTAGAC+AGG | 0.468462 | 4_2:-7595955 | Msa0586420:CDS |
TTTGATGACCCTCAGGGACT+GGG | 0.469200 | 4_2:-7595819 | Msa0586420:intron |
TTCAAGCTTAAGGCTCCATT+GGG | 0.471133 | 4_2:-7595705 | Msa0586420:CDS |
GGGAAGGTTTGTGAATAAGT+AGG | 0.474859 | 4_2:+7597977 | None:intergenic |
GCAACTGTTTCGATTGAGAC+AGG | 0.474956 | 4_2:-7596407 | Msa0586420:intron |
ATAAACAAGAGCTTGGCCTC+TGG | 0.475047 | 4_2:+7597324 | None:intergenic |
AATGACTCTGCAGGTGCAAA+GGG | 0.483245 | 4_2:+7597944 | None:intergenic |
GGAAATTCATTTACACCTGC+GGG | 0.491680 | 4_2:+7595320 | None:intergenic |
GCAGAACAGGGAAGAACAAT+GGG | 0.492072 | 4_2:-7597646 | Msa0586420:CDS |
TGCTTCTTCAACACAGACTC+AGG | 0.496291 | 4_2:+7597666 | None:intergenic |
GCGAATAATAAACAAGAGCT+TGG | 0.498068 | 4_2:+7597317 | None:intergenic |
GCTTTAGATCAAGATCAATT+GGG | 0.500299 | 4_2:-7595537 | Msa0586420:three_prime_UTR |
GCAGTATTCTCAAGAGTATG+AGG | 0.504039 | 4_2:-7597544 | Msa0586420:CDS |
CCCTGCCATAGATCAGCTTA+CGG | 0.515436 | 4_2:+7597571 | None:intergenic |
GAGTCATTCACTTCCTCCCT+CGG | 0.515591 | 4_2:-7597929 | Msa0586420:intron |
CAACAATGAACATGTTGCAC+AGG | 0.520606 | 4_2:-7596129 | Msa0586420:CDS |
AAGAGGAACCACTATGTTGA+AGG | 0.523907 | 4_2:-7595669 | Msa0586420:CDS |
AAGCTTAAGGCTCCATTGGG+TGG | 0.532905 | 4_2:-7595702 | Msa0586420:CDS |
ACATACCCATAAGTCACATA+AGG | 0.533172 | 4_2:+7596100 | None:intergenic |
GAATGACTCTGCAGGTGCAA+AGG | 0.535299 | 4_2:+7597943 | None:intergenic |
GATTTAAAGCTTATACCCGC+AGG | 0.539513 | 4_2:-7595335 | Msa0586420:three_prime_UTR |
ATCCACGAGATCTTGACTGT+TGG | 0.544552 | 4_2:-7595765 | Msa0586420:CDS |
TTCTTCTTTAAGCCACCCAA+TGG | 0.546850 | 4_2:+7595690 | None:intergenic |
TGACAACTCAATTATTGAGC+AGG | 0.556335 | 4_2:-7595915 | Msa0586420:intron |
GAGGAAGTGAATGACTCTGC+AGG | 0.559290 | 4_2:+7597935 | None:intergenic |
CCTCAGGGACTGGGAAAGCA+TGG | 0.559473 | 4_2:-7595810 | Msa0586420:intron |
AGCAGAACAGGGAAGAACAA+TGG | 0.564767 | 4_2:-7597647 | Msa0586420:CDS |
TTGTTTGCTTCCTTGAAATG+TGG | 0.570988 | 4_2:+7595741 | None:intergenic |
AAGCGTGAGGCTAAGCTGAA+AGG | 0.580752 | 4_2:-7597363 | Msa0586420:CDS |
CCTTAAGCTTGAACGGCCAA+AGG | 0.585766 | 4_2:+7595715 | None:intergenic |
GGATAAGATCTTCAACGCAT+AGG | 0.587792 | 4_2:+7595784 | None:intergenic |
GGGAAATTCATTTACACCTG+CGG | 0.589903 | 4_2:+7595319 | None:intergenic |
GTTGATTAGTTTGAAGCGTG+AGG | 0.590721 | 4_2:-7597376 | Msa0586420:CDS |
AATGGAGCCTTAAGCTTGAA+CGG | 0.593439 | 4_2:+7595708 | None:intergenic |
GTCCAACAGTCAAGATCTCG+TGG | 0.596847 | 4_2:+7595763 | None:intergenic |
CATCACCGCCTTCAACATAG+TGG | 0.607669 | 4_2:+7595661 | None:intergenic |
ATAATTGAGTTGTCAGTGAG+AGG | 0.608273 | 4_2:+7595923 | None:intergenic |
TGGGTGGCTTAAAGAAGAAG+AGG | 0.609725 | 4_2:-7595686 | Msa0586420:CDS |
CGTGAGGCTAAGCTGAAAGG+TGG | 0.613387 | 4_2:-7597360 | Msa0586420:CDS |
CCCAAATTTGAAGAGTGTAA+GGG | 0.616996 | 4_2:-7595993 | Msa0586420:CDS |
ATGCCATGGACCCCAAGACA+AGG | 0.632973 | 4_2:-7596438 | Msa0586420:CDS |
TGTGTTGAAGAAGCAGAACA+GGG | 0.649087 | 4_2:-7597658 | Msa0586420:CDS |
AACAATGAACATGTTGCACA+GGG | 0.654102 | 4_2:-7596128 | Msa0586420:CDS |
CCGTAAGCTGATCTATGGCA+GGG | 0.654899 | 4_2:-7597571 | Msa0586420:CDS |
TTAGGGTTACATACCGAGGG+AGG | 0.667853 | 4_2:+7597916 | None:intergenic |
AGGGAACTCATCTACAAACG+TGG | 0.682905 | 4_2:-7595974 | Msa0586420:CDS |
GGGAACTCATCTACAAACGT+GGG | 0.687591 | 4_2:-7595973 | Msa0586420:CDS |
AGGAACCACTATGTTGAAGG+CGG | 0.698307 | 4_2:-7595666 | Msa0586420:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCACAATATTATAGTATAA+TGG | + | chr4_2:7595542-7595561 | None:intergenic | 15.0% |
!!! | TAATTGCGTTTTTTTTTTTT+TGG | - | chr4_2:7595588-7595607 | Msa0586420:three_prime_UTR | 15.0% |
!! | GTTCTTTACAAAATTTAATA+AGG | - | chr4_2:7596546-7596565 | Msa0586420:intron | 15.0% |
!! | TGAAATGAAAAACATACAAA+TGG | + | chr4_2:7595482-7595501 | None:intergenic | 20.0% |
!! | AATGGAAAATCATAAGATAA+CGG | + | chr4_2:7595524-7595543 | None:intergenic | 20.0% |
!!! | GGTTTTGTTTTTTATTTTGT+AGG | - | chr4_2:7595913-7595932 | Msa0586420:intron | 20.0% |
!! | TAACGAGTTTAATAGAAATA+TGG | - | chr4_2:7596387-7596406 | Msa0586420:intron | 20.0% |
!! | TGAAAAATCAATCAATAGTA+AGG | + | chr4_2:7596855-7596874 | None:intergenic | 20.0% |
!!! | TTGTTGCTTTATTAACTTTA+AGG | + | chr4_2:7597176-7597195 | None:intergenic | 20.0% |
!!! | CAATTGATATTTTTTGTTGT+TGG | - | chr4_2:7597760-7597779 | Msa0586420:intron | 20.0% |
!!! | TAAAAAACAAATTTGAGACA+AGG | + | chr4_2:7597957-7597976 | None:intergenic | 20.0% |
! | AAAGAGTGAAAGAGAAATTA+GGG | + | chr4_2:7595423-7595442 | None:intergenic | 25.0% |
! | AATGAAAAACATACAAATGG+TGG | + | chr4_2:7595479-7595498 | None:intergenic | 25.0% |
!!! | TTGGTAATGAATAACAGATA+TGG | - | chr4_2:7595607-7595626 | Msa0586420:exon | 25.0% |
!! | TGGTAATGAATAACAGATAT+GGG | - | chr4_2:7595608-7595627 | Msa0586420:exon | 25.0% |
!!! | GTTTGGTTTTTTTAGTTGTT+CGG | - | chr4_2:7595831-7595850 | Msa0586420:intron | 25.0% |
! | CACTTAATTCAATTTCATGT+TGG | + | chr4_2:7596097-7596116 | None:intergenic | 25.0% |
! | AGTACTTATAGTAGAAAAGA+CGG | - | chr4_2:7596210-7596229 | Msa0586420:intron | 25.0% |
! | ATCTCTTGATCTTTCTTAAT+AGG | + | chr4_2:7596367-7596386 | None:intergenic | 25.0% |
! | TGGTATTTGATAGAATAGTA+TGG | - | chr4_2:7596407-7596426 | Msa0586420:intron | 25.0% |
! | TTCTAAACAATAAGAGAAAC+TGG | + | chr4_2:7596692-7596711 | None:intergenic | 25.0% |
!! | TTCTTCTTCTATAAGTGTTT+TGG | - | chr4_2:7596782-7596801 | Msa0586420:intron | 25.0% |
!!! | ATTTTTCAGTATTAATGCCA+TGG | - | chr4_2:7596867-7596886 | Msa0586420:intron | 25.0% |
!! | TCACCTCATTTAAATTTGTT+AGG | - | chr4_2:7596963-7596982 | Msa0586420:intron | 25.0% |
! | AAGCCTAACAAATTTAAATG+AGG | + | chr4_2:7596969-7596988 | None:intergenic | 25.0% |
!!! | TGTATACTGGATATTTTTGT+TGG | - | chr4_2:7597092-7597111 | Msa0586420:intron | 25.0% |
!!! | CTTTCTTCCTATTGATTTAA+AGG | - | chr4_2:7597249-7597268 | Msa0586420:intron | 25.0% |
! | ATCATTGCCTTTAAATCAAT+AGG | + | chr4_2:7597259-7597278 | None:intergenic | 25.0% |
!! | TTGCAGTGTTTAATCTTTTT+AGG | - | chr4_2:7597735-7597754 | Msa0586420:intron | 25.0% |
!! | TGCAGTGTTTAATCTTTTTA+GGG | - | chr4_2:7597736-7597755 | Msa0586420:intron | 25.0% |
!!! | TATCTGTTTCATGTTTTGTT+TGG | - | chr4_2:7597925-7597944 | Msa0586420:intron | 25.0% |
!! | AAGTAGGGTTTTGTAGATAT+GGG | + | chr4_2:7595329-7595348 | None:intergenic | 30.0% |
!! | TAAGTAGGGTTTTGTAGATA+TGG | + | chr4_2:7595330-7595349 | None:intergenic | 30.0% |
GAAAGAGTGAAAGAGAAATT+AGG | + | chr4_2:7595424-7595443 | None:intergenic | 30.0% | |
TTGTTTATTATTCGCATACG+AGG | - | chr4_2:7596010-7596029 | Msa0586420:intron | 30.0% | |
TGTTTATTATTCGCATACGA+GGG | - | chr4_2:7596011-7596030 | Msa0586420:intron | 30.0% | |
!!! | TGTTTTGTGTTGATTCAGAT+TGG | - | chr4_2:7596046-7596065 | Msa0586420:intron | 30.0% |
AATTAAGTGTAGTAGAGATG+AGG | - | chr4_2:7596108-7596127 | Msa0586420:CDS | 30.0% | |
TGATAAAGACTAGACAAGAT+AGG | - | chr4_2:7596148-7596167 | Msa0586420:CDS | 30.0% | |
GAAACTAGACTTATGTGATT+TGG | - | chr4_2:7596235-7596254 | Msa0586420:intron | 30.0% | |
! | GTTTTTGATGAAGTTATACG+AGG | - | chr4_2:7596587-7596606 | Msa0586420:intron | 30.0% |
TGAAACAATTGAGACGTAAA+TGG | - | chr4_2:7596617-7596636 | Msa0586420:intron | 30.0% | |
AAACATCTAAGAAGACAACT+GGG | + | chr4_2:7596818-7596837 | None:intergenic | 30.0% | |
AAAACATCTAAGAAGACAAC+TGG | + | chr4_2:7596819-7596838 | None:intergenic | 30.0% | |
! | AGTTGTCTTCTTAGATGTTT+TGG | - | chr4_2:7596818-7596837 | Msa0586420:intron | 30.0% |
! | TGCAAAATTTTCCTTGTCTT+GGG | + | chr4_2:7596895-7596914 | None:intergenic | 30.0% |
! | TTGCAAAATTTTCCTTGTCT+TGG | + | chr4_2:7596896-7596915 | None:intergenic | 30.0% |
ATGAATCATAGACTTCTCAA+AGG | + | chr4_2:7597051-7597070 | None:intergenic | 30.0% | |
!!! | ATTTTAGAGCAACTGTATAC+TGG | - | chr4_2:7597079-7597098 | Msa0586420:intron | 30.0% |
! | TTTGCTCAACAGATTTTCAA+TGG | - | chr4_2:7597144-7597163 | Msa0586420:intron | 30.0% |
! | ATTTTCCTTCAACACTCAAA+AGG | - | chr4_2:7597282-7597301 | Msa0586420:intron | 30.0% |
! | GCTCATTGATGTAATTTTCA+CGG | + | chr4_2:7597691-7597710 | None:intergenic | 30.0% |
! | GCAGTGTTTAATCTTTTTAG+GGG | - | chr4_2:7597737-7597756 | Msa0586420:intron | 30.0% |
! | GCTTTAGATCAAGATCAATT+GGG | - | chr4_2:7597782-7597801 | Msa0586420:intron | 30.0% |
!! | CAATTGGGTATCTGAAATTT+TGG | - | chr4_2:7597797-7597816 | Msa0586420:intron | 30.0% |
! | TGTTTTGCAAAGTCTGAATT+TGG | - | chr4_2:7597850-7597869 | Msa0586420:intron | 30.0% |
GGAAGGTTTGTGAATAAGTA+GGG | + | chr4_2:7595344-7595363 | None:intergenic | 35.0% | |
AAATTAGGGTTACATACCGA+GGG | + | chr4_2:7595409-7595428 | None:intergenic | 35.0% | |
!! | AAATGGTGGATCAAAGATTC+AGG | + | chr4_2:7595465-7595484 | None:intergenic | 35.0% |
! | TTCTCAAGAGTATGAGGATA+AGG | - | chr4_2:7595781-7595800 | Msa0586420:CDS | 35.0% |
CGGATTTATAGTGATAGTTC+TGG | - | chr4_2:7595851-7595870 | Msa0586420:intron | 35.0% | |
CTCACTAATCAATTGTGTTG+TGG | - | chr4_2:7595892-7595911 | Msa0586420:intron | 35.0% | |
! | TGGATTTTATGTTGATCCAG+AGG | - | chr4_2:7595979-7595998 | Msa0586420:CDS | 35.0% |
GCGAATAATAAACAAGAGCT+TGG | + | chr4_2:7596005-7596024 | None:intergenic | 35.0% | |
! | TCAGATTGGATTAGAGTGTT+AGG | - | chr4_2:7596060-7596079 | Msa0586420:intron | 35.0% |
AACATTAGACTAGAGAGAGT+TGG | - | chr4_2:7596183-7596202 | Msa0586420:CDS | 35.0% | |
ACATTAGACTAGAGAGAGTT+GGG | - | chr4_2:7596184-7596203 | Msa0586420:CDS | 35.0% | |
ACTTATAGTAGAAAAGACGG+TGG | - | chr4_2:7596213-7596232 | Msa0586420:intron | 35.0% | |
AGTCAAATCACTAGATGTAG+AGG | - | chr4_2:7596316-7596335 | Msa0586420:intron | 35.0% | |
CCTAATCCAATCTGAATCAA+CGG | + | chr4_2:7596497-7596516 | None:intergenic | 35.0% | |
!! | CGTTGATTCAGATTGGATTA+GGG | - | chr4_2:7596495-7596514 | Msa0586420:intron | 35.0% |
! | GCAAAATTTTCCTTGTCTTG+GGG | + | chr4_2:7596894-7596913 | None:intergenic | 35.0% |
TTGTTGGTATAAGAGCAGTT+TGG | - | chr4_2:7597108-7597127 | Msa0586420:intron | 35.0% | |
ATCTGTTGAGCAAACACATA+AGG | + | chr4_2:7597138-7597157 | None:intergenic | 35.0% | |
AACAATGAACATGTTGCACA+GGG | - | chr4_2:7597191-7597210 | Msa0586420:intron | 35.0% | |
! | TTGAGCCTTATGTGACTTAT+GGG | - | chr4_2:7597214-7597233 | Msa0586420:intron | 35.0% |
ACATACCCATAAGTCACATA+AGG | + | chr4_2:7597222-7597241 | None:intergenic | 35.0% | |
! | ACCCAAATTTGAAGAGTGTA+AGG | - | chr4_2:7597325-7597344 | Msa0586420:intron | 35.0% |
CCCTTACACTCTTCAAATTT+GGG | + | chr4_2:7597329-7597348 | None:intergenic | 35.0% | |
! | CCCAAATTTGAAGAGTGTAA+GGG | - | chr4_2:7597326-7597345 | Msa0586420:intron | 35.0% |
TCCCTTACACTCTTCAAATT+TGG | + | chr4_2:7597330-7597349 | None:intergenic | 35.0% | |
! | ATAATTGAGTTGTCAGTGAG+AGG | + | chr4_2:7597399-7597418 | None:intergenic | 35.0% |
TGACAACTCAATTATTGAGC+AGG | - | chr4_2:7597404-7597423 | Msa0586420:intron | 35.0% | |
TTGTTTGCTTCCTTGAAATG+TGG | + | chr4_2:7597581-7597600 | None:intergenic | 35.0% | |
ATTACATCAATGAGCTCATC+AGG | - | chr4_2:7597696-7597715 | Msa0586420:CDS | 35.0% | |
!! | GGCTTTAGATCAAGATCAAT+TGG | - | chr4_2:7597781-7597800 | Msa0586420:intron | 35.0% |
GGGAAGGTTTGTGAATAAGT+AGG | + | chr4_2:7595345-7595364 | None:intergenic | 40.0% | |
GAAATTAGGGTTACATACCG+AGG | + | chr4_2:7595410-7595429 | None:intergenic | 40.0% | |
TGTGTTGAAGAAGCAGAACA+GGG | - | chr4_2:7595661-7595680 | Msa0586420:CDS | 40.0% | |
! | GCAGTATTCTCAAGAGTATG+AGG | - | chr4_2:7595775-7595794 | Msa0586420:CDS | 40.0% |
!! | GTTGATTAGTTTGAAGCGTG+AGG | - | chr4_2:7595943-7595962 | Msa0586420:CDS | 40.0% |
CATTAGACTAGAGAGAGTTG+GGG | - | chr4_2:7596185-7596204 | Msa0586420:CDS | 40.0% | |
ATTAGACTAGAGAGAGTTGG+GGG | - | chr4_2:7596186-7596205 | Msa0586420:CDS | 40.0% | |
AGGAGAGTAGATTAGACAAC+AGG | - | chr4_2:7596292-7596311 | Msa0586420:intron | 40.0% | |
GGAGAGTAGATTAGACAACA+GGG | - | chr4_2:7596293-7596312 | Msa0586420:intron | 40.0% | |
CTTATCCCACTAAGTGAGAT+CGG | + | chr4_2:7596452-7596471 | None:intergenic | 40.0% | |
TCACTTAGTGGGATAAGGTT+TGG | - | chr4_2:7596455-7596474 | Msa0586420:intron | 40.0% | |
!! | TGTTGTCCGTTGATTCAGAT+TGG | - | chr4_2:7596488-7596507 | Msa0586420:intron | 40.0% |
!! | CCGTTGATTCAGATTGGATT+AGG | - | chr4_2:7596494-7596513 | Msa0586420:intron | 40.0% |
!! | ATAAGGCGTTGTTAGCTTAG+CGG | - | chr4_2:7596563-7596582 | Msa0586420:intron | 40.0% |
! | TGCCTTGTTGTGTTTGTAGT+TGG | - | chr4_2:7596998-7597017 | Msa0586420:intron | 40.0% |
! | GCCTTGTTGTGTTTGTAGTT+GGG | - | chr4_2:7596999-7597018 | Msa0586420:intron | 40.0% |
ACCCAACTACAAACACAACA+AGG | + | chr4_2:7597003-7597022 | None:intergenic | 40.0% | |
CAACAATGAACATGTTGCAC+AGG | - | chr4_2:7597190-7597209 | Msa0586420:intron | 40.0% | |
! | GTTGAGCCTTATGTGACTTA+TGG | - | chr4_2:7597213-7597232 | Msa0586420:intron | 40.0% |
!!! | GAAAGCCTTTTGAGTGTTGA+AGG | + | chr4_2:7597290-7597309 | None:intergenic | 40.0% |
CAAAGCAAGTCAGCAACATA+TGG | + | chr4_2:7597484-7597503 | None:intergenic | 40.0% | |
GGATAAGATCTTCAACGCAT+AGG | + | chr4_2:7597538-7597557 | None:intergenic | 40.0% | |
AGGAAGCAAACAACTTCCTT+TGG | - | chr4_2:7597588-7597607 | Msa0586420:CDS | 40.0% | |
AATGGAGCCTTAAGCTTGAA+CGG | + | chr4_2:7597614-7597633 | None:intergenic | 40.0% | |
TTCAAGCTTAAGGCTCCATT+GGG | - | chr4_2:7597614-7597633 | Msa0586420:CDS | 40.0% | |
TTCTTCTTTAAGCCACCCAA+TGG | + | chr4_2:7597632-7597651 | None:intergenic | 40.0% | |
AAGAGGAACCACTATGTTGA+AGG | - | chr4_2:7597650-7597669 | Msa0586420:CDS | 40.0% | |
! | GATTTAAAGCTTATACCCGC+AGG | - | chr4_2:7597984-7598003 | Msa0586420:five_prime_UTR | 40.0% |
GGAAATTCATTTACACCTGC+GGG | + | chr4_2:7598002-7598021 | None:intergenic | 40.0% | |
GGGAAATTCATTTACACCTG+CGG | + | chr4_2:7598003-7598022 | None:intergenic | 40.0% | |
AATGACTCTGCAGGTGCAAA+GGG | + | chr4_2:7595378-7595397 | None:intergenic | 45.0% | |
TGCTTCTTCAACACAGACTC+AGG | + | chr4_2:7595656-7595675 | None:intergenic | 45.0% | |
CTGTGTTGAAGAAGCAGAAC+AGG | - | chr4_2:7595660-7595679 | Msa0586420:CDS | 45.0% | |
AGCAGAACAGGGAAGAACAA+TGG | - | chr4_2:7595672-7595691 | Msa0586420:CDS | 45.0% | |
GCAGAACAGGGAAGAACAAT+GGG | - | chr4_2:7595673-7595692 | Msa0586420:CDS | 45.0% | |
GAGAACCGTAAGCTGATCTA+TGG | - | chr4_2:7595743-7595762 | Msa0586420:CDS | 45.0% | |
ATAAACAAGAGCTTGGCCTC+TGG | + | chr4_2:7595998-7596017 | None:intergenic | 45.0% | |
ACATGTAGAGTGAAGACCTG+TGG | - | chr4_2:7596258-7596277 | Msa0586420:intron | 45.0% | |
! | GACCTGTGGATTTTGTAGCA+AGG | - | chr4_2:7596272-7596291 | Msa0586420:intron | 45.0% |
CTCCTTGCTACAAAATCCAC+AGG | + | chr4_2:7596277-7596296 | None:intergenic | 45.0% | |
ACTAAGTGAGATCGGCTACA+TGG | + | chr4_2:7596444-7596463 | None:intergenic | 45.0% | |
ATGTAGCCGATCTCACTTAG+TGG | - | chr4_2:7596443-7596462 | Msa0586420:CDS | 45.0% | |
TGTAGCCGATCTCACTTAGT+GGG | - | chr4_2:7596444-7596463 | Msa0586420:CDS | 45.0% | |
CGATCTCACTTAGTGGGATA+AGG | - | chr4_2:7596450-7596469 | Msa0586420:intron | 45.0% | |
GCAACTGTTTCGATTGAGAC+AGG | - | chr4_2:7596912-7596931 | Msa0586420:intron | 45.0% | |
AGGGAACTCATCTACAAACG+TGG | - | chr4_2:7597345-7597364 | Msa0586420:CDS | 45.0% | |
GGGAACTCATCTACAAACGT+GGG | - | chr4_2:7597346-7597365 | Msa0586420:CDS | 45.0% | |
CTCATCTACAAACGTGGGTA+TGG | - | chr4_2:7597351-7597370 | Msa0586420:CDS | 45.0% | |
! | ACTTGCTTTGATGACCCTCA+GGG | - | chr4_2:7597494-7597513 | Msa0586420:intron | 45.0% |
ATCCACGAGATCTTGACTGT+TGG | - | chr4_2:7597554-7597573 | Msa0586420:CDS | 45.0% | |
GACTGTTGGACCACATTTCA+AGG | - | chr4_2:7597568-7597587 | Msa0586420:CDS | 45.0% | |
GTTCAAGCTTAAGGCTCCAT+TGG | - | chr4_2:7597613-7597632 | Msa0586420:CDS | 45.0% | |
TGGGTGGCTTAAAGAAGAAG+AGG | - | chr4_2:7597633-7597652 | Msa0586420:CDS | 45.0% | |
AGGAACCACTATGTTGAAGG+CGG | - | chr4_2:7597653-7597672 | Msa0586420:CDS | 45.0% | |
GAATGACTCTGCAGGTGCAA+AGG | + | chr4_2:7595379-7595398 | None:intergenic | 50.0% | |
GAGGAAGTGAATGACTCTGC+AGG | + | chr4_2:7595387-7595406 | None:intergenic | 50.0% | |
GAGTCATTCACTTCCTCCCT+CGG | - | chr4_2:7595390-7595409 | Msa0586420:three_prime_UTR | 50.0% | |
TTAGGGTTACATACCGAGGG+AGG | + | chr4_2:7595406-7595425 | None:intergenic | 50.0% | |
! | CAGGGAAGAACAATGGGCTT+TGG | - | chr4_2:7595679-7595698 | Msa0586420:CDS | 50.0% |
ACCGTAAGCTGATCTATGGC+AGG | - | chr4_2:7595747-7595766 | Msa0586420:CDS | 50.0% | |
CCCTGCCATAGATCAGCTTA+CGG | + | chr4_2:7595751-7595770 | None:intergenic | 50.0% | |
CCGTAAGCTGATCTATGGCA+GGG | - | chr4_2:7595748-7595767 | Msa0586420:CDS | 50.0% | |
GTCACTGCAGTGCTCTTGTT+TGG | - | chr4_2:7595814-7595833 | Msa0586420:intron | 50.0% | |
AAGCGTGAGGCTAAGCTGAA+AGG | - | chr4_2:7595956-7595975 | Msa0586420:CDS | 50.0% | |
TTTCCTTGTCTTGGGGTCCA+TGG | + | chr4_2:7596887-7596906 | None:intergenic | 50.0% | |
GTGGGTATGGAAAGCTAGAC+AGG | - | chr4_2:7597364-7597383 | Msa0586420:CDS | 50.0% | |
! | GACTTGCTTTGATGACCCTC+AGG | - | chr4_2:7597493-7597512 | Msa0586420:intron | 50.0% |
! | TTTGATGACCCTCAGGGACT+GGG | - | chr4_2:7597500-7597519 | Msa0586420:intron | 50.0% |
GTCCAACAGTCAAGATCTCG+TGG | + | chr4_2:7597559-7597578 | None:intergenic | 50.0% | |
CCTTAAGCTTGAACGGCCAA+AGG | + | chr4_2:7597607-7597626 | None:intergenic | 50.0% | |
CCTTTGGCCGTTCAAGCTTA+AGG | - | chr4_2:7597604-7597623 | Msa0586420:CDS | 50.0% | |
AAGCTTAAGGCTCCATTGGG+TGG | - | chr4_2:7597617-7597636 | Msa0586420:CDS | 50.0% | |
CATCACCGCCTTCAACATAG+TGG | + | chr4_2:7597661-7597680 | None:intergenic | 50.0% | |
TATGTTGAAGGCGGTGATGC+TGG | - | chr4_2:7597662-7597681 | Msa0586420:CDS | 50.0% | |
! | AAAGGGTTTTCGCTGCGGGA+AGG | + | chr4_2:7595361-7595380 | None:intergenic | 55.0% |
! | GTGCAAAGGGTTTTCGCTGC+GGG | + | chr4_2:7595365-7595384 | None:intergenic | 55.0% |
! | GGTGCAAAGGGTTTTCGCTG+CGG | + | chr4_2:7595366-7595385 | None:intergenic | 55.0% |
CGTGAGGCTAAGCTGAAAGG+TGG | - | chr4_2:7595959-7595978 | Msa0586420:CDS | 55.0% | |
ATGCCATGGACCCCAAGACA+AGG | - | chr4_2:7596881-7596900 | Msa0586420:intron | 55.0% | |
! | CTTTGATGACCCTCAGGGAC+TGG | - | chr4_2:7597499-7597518 | Msa0586420:intron | 55.0% |
CATGCTTTCCCAGTCCCTGA+GGG | + | chr4_2:7597511-7597530 | None:intergenic | 55.0% | |
CCATGCTTTCCCAGTCCCTG+AGG | + | chr4_2:7597512-7597531 | None:intergenic | 60.0% | |
CCTCAGGGACTGGGAAAGCA+TGG | - | chr4_2:7597509-7597528 | Msa0586420:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 7595319 | 7598022 | 7595319 | ID=Msa0586420;Name=Msa0586420 |
chr4_2 | mRNA | 7595319 | 7598022 | 7595319 | ID=Msa0586420-mRNA-1;Parent=Msa0586420;Name=Msa0586420-mRNA-1;_AED=0.10;_eAED=0.10;_QI=95|0.66|0.71|1|1|0.85|7|292|246 |
chr4_2 | exon | 7595319 | 7595826 | 7595319 | ID=Msa0586420-mRNA-1:exon:2007;Parent=Msa0586420-mRNA-1 |
chr4_2 | exon | 7595916 | 7596018 | 7595916 | ID=Msa0586420-mRNA-1:exon:2006;Parent=Msa0586420-mRNA-1 |
chr4_2 | exon | 7596106 | 7596215 | 7596106 | ID=Msa0586420-mRNA-1:exon:2005;Parent=Msa0586420-mRNA-1 |
chr4_2 | exon | 7596408 | 7596465 | 7596408 | ID=Msa0586420-mRNA-1:exon:2004;Parent=Msa0586420-mRNA-1 |
chr4_2 | exon | 7597330 | 7597406 | 7597330 | ID=Msa0586420-mRNA-1:exon:2003;Parent=Msa0586420-mRNA-1 |
chr4_2 | exon | 7597539 | 7597717 | 7597539 | ID=Msa0586420-mRNA-1:exon:2002;Parent=Msa0586420-mRNA-1 |
chr4_2 | exon | 7597930 | 7598022 | 7597930 | ID=Msa0586420-mRNA-1:exon:2001;Parent=Msa0586420-mRNA-1 |
chr4_2 | five_prime_UTR | 7597930 | 7598022 | 7597930 | ID=Msa0586420-mRNA-1:five_prime_utr;Parent=Msa0586420-mRNA-1 |
chr4_2 | five_prime_UTR | 7597716 | 7597717 | 7597716 | ID=Msa0586420-mRNA-1:five_prime_utr;Parent=Msa0586420-mRNA-1 |
chr4_2 | CDS | 7597539 | 7597715 | 7597539 | ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1 |
chr4_2 | CDS | 7597330 | 7597406 | 7597330 | ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1 |
chr4_2 | CDS | 7596408 | 7596465 | 7596408 | ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1 |
chr4_2 | CDS | 7596106 | 7596215 | 7596106 | ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1 |
chr4_2 | CDS | 7595916 | 7596018 | 7595916 | ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1 |
chr4_2 | CDS | 7595611 | 7595826 | 7595611 | ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1 |
chr4_2 | three_prime_UTR | 7595319 | 7595610 | 7595319 | ID=Msa0586420-mRNA-1:three_prime_utr;Parent=Msa0586420-mRNA-1 |
Gene Sequence |
Protein sequence |