AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0586420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0586420 MtrunA17_Chr4g0002321 90.909 253 6 2 1 246 1 243 7.92e-166 457
Msa0586420 MtrunA17_Chr1g0155331 80.478 251 32 2 3 246 4 244 1.61e-147 411
Msa0586420 MtrunA17_Chr2g0298841 79.681 251 34 2 3 246 4 244 8.32e-146 407
Msa0586420 MtrunA17_Chr7g0237701 43.265 245 121 3 9 246 13 246 2.73e-65 203
Msa0586420 MtrunA17_Chr1g0155311 91.667 60 5 0 177 236 3 62 2.83e-36 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0586420 AT3G13580.5 78.800 250 36 2 4 246 5 244 8.82e-144 402
Msa0586420 AT3G13580.4 78.800 250 36 2 4 246 5 244 8.82e-144 402
Msa0586420 AT3G13580.2 78.800 250 36 2 4 246 5 244 8.82e-144 402
Msa0586420 AT3G13580.3 78.800 250 36 2 4 246 5 244 8.82e-144 402
Msa0586420 AT3G13580.1 78.800 250 36 2 4 246 5 244 8.82e-144 402
Msa0586420 AT3G13580.7 78.800 250 36 2 4 246 5 244 8.82e-144 402
Msa0586420 AT3G13580.8 78.800 250 36 2 4 246 5 244 8.82e-144 402
Msa0586420 AT3G13580.6 78.800 250 36 2 4 246 5 244 8.82e-144 402
Msa0586420 AT3G13580.9 78.800 250 36 2 4 246 5 244 8.82e-144 402
Msa0586420 AT2G01250.1 79.200 250 35 2 4 246 3 242 1.50e-141 396
Msa0586420 AT2G44120.1 76.000 250 43 2 4 246 3 242 8.05e-136 382
Msa0586420 AT2G44120.2 76.000 250 43 2 4 246 8 247 8.71e-136 382
Msa0586420 AT2G01250.2 71.892 185 35 2 4 181 3 177 5.73e-86 253
Msa0586420 AT1G80750.1 38.976 254 135 5 3 246 4 247 1.93e-50 165

Find 71 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTGCTTTATTAACTTTA+AGG 0.075401 4_2:+7596146 None:intergenic
TCCCTTACACTCTTCAAATT+TGG 0.097727 4_2:+7595992 None:intergenic
CAATTGGGTATCTGAAATTT+TGG 0.126096 4_2:-7595522 Msa0586420:three_prime_UTR
GTTGAGCCTTATGTGACTTA+TGG 0.277993 4_2:-7596106 Msa0586420:CDS
CCCTTACACTCTTCAAATTT+GGG 0.292487 4_2:+7595993 None:intergenic
GGCTTTAGATCAAGATCAAT+TGG 0.333078 4_2:-7595538 Msa0586420:three_prime_UTR
TTGAGCCTTATGTGACTTAT+GGG 0.362158 4_2:-7596105 Msa0586420:intron
CTGTGTTGAAGAAGCAGAAC+AGG 0.363263 4_2:-7597659 Msa0586420:CDS
CCTTTGGCCGTTCAAGCTTA+AGG 0.366667 4_2:-7595715 Msa0586420:CDS
AGGAAGCAAACAACTTCCTT+TGG 0.396409 4_2:-7595731 Msa0586420:CDS
GACTGTTGGACCACATTTCA+AGG 0.408463 4_2:-7595751 Msa0586420:CDS
ACCCAAATTTGAAGAGTGTA+AGG 0.411117 4_2:-7595994 Msa0586420:CDS
ATTACATCAATGAGCTCATC+AGG 0.421060 4_2:-7595623 Msa0586420:CDS
CTCATCTACAAACGTGGGTA+TGG 0.426956 4_2:-7595968 Msa0586420:CDS
TTTCCTTGTCTTGGGGTCCA+TGG 0.427816 4_2:+7596435 None:intergenic
GAGAACCGTAAGCTGATCTA+TGG 0.446007 4_2:-7597576 Msa0586420:CDS
GTTCAAGCTTAAGGCTCCAT+TGG 0.447908 4_2:-7595706 Msa0586420:CDS
TTCTCAAGAGTATGAGGATA+AGG 0.453623 4_2:-7597538 Msa0586420:intron
TATGTTGAAGGCGGTGATGC+TGG 0.455644 4_2:-7595657 Msa0586420:CDS
GGAAGGTTTGTGAATAAGTA+GGG 0.456126 4_2:+7597978 None:intergenic
ATCTGTTGAGCAAACACATA+AGG 0.459436 4_2:+7596184 None:intergenic
CAGGGAAGAACAATGGGCTT+TGG 0.464957 4_2:-7597640 Msa0586420:CDS
ACCGTAAGCTGATCTATGGC+AGG 0.465539 4_2:-7597572 Msa0586420:CDS
GTGGGTATGGAAAGCTAGAC+AGG 0.468462 4_2:-7595955 Msa0586420:CDS
TTTGATGACCCTCAGGGACT+GGG 0.469200 4_2:-7595819 Msa0586420:intron
TTCAAGCTTAAGGCTCCATT+GGG 0.471133 4_2:-7595705 Msa0586420:CDS
GGGAAGGTTTGTGAATAAGT+AGG 0.474859 4_2:+7597977 None:intergenic
GCAACTGTTTCGATTGAGAC+AGG 0.474956 4_2:-7596407 Msa0586420:intron
ATAAACAAGAGCTTGGCCTC+TGG 0.475047 4_2:+7597324 None:intergenic
AATGACTCTGCAGGTGCAAA+GGG 0.483245 4_2:+7597944 None:intergenic
GGAAATTCATTTACACCTGC+GGG 0.491680 4_2:+7595320 None:intergenic
GCAGAACAGGGAAGAACAAT+GGG 0.492072 4_2:-7597646 Msa0586420:CDS
TGCTTCTTCAACACAGACTC+AGG 0.496291 4_2:+7597666 None:intergenic
GCGAATAATAAACAAGAGCT+TGG 0.498068 4_2:+7597317 None:intergenic
GCTTTAGATCAAGATCAATT+GGG 0.500299 4_2:-7595537 Msa0586420:three_prime_UTR
GCAGTATTCTCAAGAGTATG+AGG 0.504039 4_2:-7597544 Msa0586420:CDS
CCCTGCCATAGATCAGCTTA+CGG 0.515436 4_2:+7597571 None:intergenic
GAGTCATTCACTTCCTCCCT+CGG 0.515591 4_2:-7597929 Msa0586420:intron
CAACAATGAACATGTTGCAC+AGG 0.520606 4_2:-7596129 Msa0586420:CDS
AAGAGGAACCACTATGTTGA+AGG 0.523907 4_2:-7595669 Msa0586420:CDS
AAGCTTAAGGCTCCATTGGG+TGG 0.532905 4_2:-7595702 Msa0586420:CDS
ACATACCCATAAGTCACATA+AGG 0.533172 4_2:+7596100 None:intergenic
GAATGACTCTGCAGGTGCAA+AGG 0.535299 4_2:+7597943 None:intergenic
GATTTAAAGCTTATACCCGC+AGG 0.539513 4_2:-7595335 Msa0586420:three_prime_UTR
ATCCACGAGATCTTGACTGT+TGG 0.544552 4_2:-7595765 Msa0586420:CDS
TTCTTCTTTAAGCCACCCAA+TGG 0.546850 4_2:+7595690 None:intergenic
TGACAACTCAATTATTGAGC+AGG 0.556335 4_2:-7595915 Msa0586420:intron
GAGGAAGTGAATGACTCTGC+AGG 0.559290 4_2:+7597935 None:intergenic
CCTCAGGGACTGGGAAAGCA+TGG 0.559473 4_2:-7595810 Msa0586420:intron
AGCAGAACAGGGAAGAACAA+TGG 0.564767 4_2:-7597647 Msa0586420:CDS
TTGTTTGCTTCCTTGAAATG+TGG 0.570988 4_2:+7595741 None:intergenic
AAGCGTGAGGCTAAGCTGAA+AGG 0.580752 4_2:-7597363 Msa0586420:CDS
CCTTAAGCTTGAACGGCCAA+AGG 0.585766 4_2:+7595715 None:intergenic
GGATAAGATCTTCAACGCAT+AGG 0.587792 4_2:+7595784 None:intergenic
GGGAAATTCATTTACACCTG+CGG 0.589903 4_2:+7595319 None:intergenic
GTTGATTAGTTTGAAGCGTG+AGG 0.590721 4_2:-7597376 Msa0586420:CDS
AATGGAGCCTTAAGCTTGAA+CGG 0.593439 4_2:+7595708 None:intergenic
GTCCAACAGTCAAGATCTCG+TGG 0.596847 4_2:+7595763 None:intergenic
CATCACCGCCTTCAACATAG+TGG 0.607669 4_2:+7595661 None:intergenic
ATAATTGAGTTGTCAGTGAG+AGG 0.608273 4_2:+7595923 None:intergenic
TGGGTGGCTTAAAGAAGAAG+AGG 0.609725 4_2:-7595686 Msa0586420:CDS
CGTGAGGCTAAGCTGAAAGG+TGG 0.613387 4_2:-7597360 Msa0586420:CDS
CCCAAATTTGAAGAGTGTAA+GGG 0.616996 4_2:-7595993 Msa0586420:CDS
ATGCCATGGACCCCAAGACA+AGG 0.632973 4_2:-7596438 Msa0586420:CDS
TGTGTTGAAGAAGCAGAACA+GGG 0.649087 4_2:-7597658 Msa0586420:CDS
AACAATGAACATGTTGCACA+GGG 0.654102 4_2:-7596128 Msa0586420:CDS
CCGTAAGCTGATCTATGGCA+GGG 0.654899 4_2:-7597571 Msa0586420:CDS
TTAGGGTTACATACCGAGGG+AGG 0.667853 4_2:+7597916 None:intergenic
AGGGAACTCATCTACAAACG+TGG 0.682905 4_2:-7595974 Msa0586420:CDS
GGGAACTCATCTACAAACGT+GGG 0.687591 4_2:-7595973 Msa0586420:CDS
AGGAACCACTATGTTGAAGG+CGG 0.698307 4_2:-7595666 Msa0586420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCACAATATTATAGTATAA+TGG + chr4_2:7595542-7595561 None:intergenic 15.0%
!!! TAATTGCGTTTTTTTTTTTT+TGG - chr4_2:7595588-7595607 Msa0586420:three_prime_UTR 15.0%
!! GTTCTTTACAAAATTTAATA+AGG - chr4_2:7596546-7596565 Msa0586420:intron 15.0%
!! TGAAATGAAAAACATACAAA+TGG + chr4_2:7595482-7595501 None:intergenic 20.0%
!! AATGGAAAATCATAAGATAA+CGG + chr4_2:7595524-7595543 None:intergenic 20.0%
!!! GGTTTTGTTTTTTATTTTGT+AGG - chr4_2:7595913-7595932 Msa0586420:intron 20.0%
!! TAACGAGTTTAATAGAAATA+TGG - chr4_2:7596387-7596406 Msa0586420:intron 20.0%
!! TGAAAAATCAATCAATAGTA+AGG + chr4_2:7596855-7596874 None:intergenic 20.0%
!!! TTGTTGCTTTATTAACTTTA+AGG + chr4_2:7597176-7597195 None:intergenic 20.0%
!!! CAATTGATATTTTTTGTTGT+TGG - chr4_2:7597760-7597779 Msa0586420:intron 20.0%
!!! TAAAAAACAAATTTGAGACA+AGG + chr4_2:7597957-7597976 None:intergenic 20.0%
! AAAGAGTGAAAGAGAAATTA+GGG + chr4_2:7595423-7595442 None:intergenic 25.0%
! AATGAAAAACATACAAATGG+TGG + chr4_2:7595479-7595498 None:intergenic 25.0%
!!! TTGGTAATGAATAACAGATA+TGG - chr4_2:7595607-7595626 Msa0586420:exon 25.0%
!! TGGTAATGAATAACAGATAT+GGG - chr4_2:7595608-7595627 Msa0586420:exon 25.0%
!!! GTTTGGTTTTTTTAGTTGTT+CGG - chr4_2:7595831-7595850 Msa0586420:intron 25.0%
! CACTTAATTCAATTTCATGT+TGG + chr4_2:7596097-7596116 None:intergenic 25.0%
! AGTACTTATAGTAGAAAAGA+CGG - chr4_2:7596210-7596229 Msa0586420:intron 25.0%
! ATCTCTTGATCTTTCTTAAT+AGG + chr4_2:7596367-7596386 None:intergenic 25.0%
! TGGTATTTGATAGAATAGTA+TGG - chr4_2:7596407-7596426 Msa0586420:intron 25.0%
! TTCTAAACAATAAGAGAAAC+TGG + chr4_2:7596692-7596711 None:intergenic 25.0%
!! TTCTTCTTCTATAAGTGTTT+TGG - chr4_2:7596782-7596801 Msa0586420:intron 25.0%
!!! ATTTTTCAGTATTAATGCCA+TGG - chr4_2:7596867-7596886 Msa0586420:intron 25.0%
!! TCACCTCATTTAAATTTGTT+AGG - chr4_2:7596963-7596982 Msa0586420:intron 25.0%
! AAGCCTAACAAATTTAAATG+AGG + chr4_2:7596969-7596988 None:intergenic 25.0%
!!! TGTATACTGGATATTTTTGT+TGG - chr4_2:7597092-7597111 Msa0586420:intron 25.0%
!!! CTTTCTTCCTATTGATTTAA+AGG - chr4_2:7597249-7597268 Msa0586420:intron 25.0%
! ATCATTGCCTTTAAATCAAT+AGG + chr4_2:7597259-7597278 None:intergenic 25.0%
!! TTGCAGTGTTTAATCTTTTT+AGG - chr4_2:7597735-7597754 Msa0586420:intron 25.0%
!! TGCAGTGTTTAATCTTTTTA+GGG - chr4_2:7597736-7597755 Msa0586420:intron 25.0%
!!! TATCTGTTTCATGTTTTGTT+TGG - chr4_2:7597925-7597944 Msa0586420:intron 25.0%
!! AAGTAGGGTTTTGTAGATAT+GGG + chr4_2:7595329-7595348 None:intergenic 30.0%
!! TAAGTAGGGTTTTGTAGATA+TGG + chr4_2:7595330-7595349 None:intergenic 30.0%
GAAAGAGTGAAAGAGAAATT+AGG + chr4_2:7595424-7595443 None:intergenic 30.0%
TTGTTTATTATTCGCATACG+AGG - chr4_2:7596010-7596029 Msa0586420:intron 30.0%
TGTTTATTATTCGCATACGA+GGG - chr4_2:7596011-7596030 Msa0586420:intron 30.0%
!!! TGTTTTGTGTTGATTCAGAT+TGG - chr4_2:7596046-7596065 Msa0586420:intron 30.0%
AATTAAGTGTAGTAGAGATG+AGG - chr4_2:7596108-7596127 Msa0586420:CDS 30.0%
TGATAAAGACTAGACAAGAT+AGG - chr4_2:7596148-7596167 Msa0586420:CDS 30.0%
GAAACTAGACTTATGTGATT+TGG - chr4_2:7596235-7596254 Msa0586420:intron 30.0%
! GTTTTTGATGAAGTTATACG+AGG - chr4_2:7596587-7596606 Msa0586420:intron 30.0%
TGAAACAATTGAGACGTAAA+TGG - chr4_2:7596617-7596636 Msa0586420:intron 30.0%
AAACATCTAAGAAGACAACT+GGG + chr4_2:7596818-7596837 None:intergenic 30.0%
AAAACATCTAAGAAGACAAC+TGG + chr4_2:7596819-7596838 None:intergenic 30.0%
! AGTTGTCTTCTTAGATGTTT+TGG - chr4_2:7596818-7596837 Msa0586420:intron 30.0%
! TGCAAAATTTTCCTTGTCTT+GGG + chr4_2:7596895-7596914 None:intergenic 30.0%
! TTGCAAAATTTTCCTTGTCT+TGG + chr4_2:7596896-7596915 None:intergenic 30.0%
ATGAATCATAGACTTCTCAA+AGG + chr4_2:7597051-7597070 None:intergenic 30.0%
!!! ATTTTAGAGCAACTGTATAC+TGG - chr4_2:7597079-7597098 Msa0586420:intron 30.0%
! TTTGCTCAACAGATTTTCAA+TGG - chr4_2:7597144-7597163 Msa0586420:intron 30.0%
! ATTTTCCTTCAACACTCAAA+AGG - chr4_2:7597282-7597301 Msa0586420:intron 30.0%
! GCTCATTGATGTAATTTTCA+CGG + chr4_2:7597691-7597710 None:intergenic 30.0%
! GCAGTGTTTAATCTTTTTAG+GGG - chr4_2:7597737-7597756 Msa0586420:intron 30.0%
! GCTTTAGATCAAGATCAATT+GGG - chr4_2:7597782-7597801 Msa0586420:intron 30.0%
!! CAATTGGGTATCTGAAATTT+TGG - chr4_2:7597797-7597816 Msa0586420:intron 30.0%
! TGTTTTGCAAAGTCTGAATT+TGG - chr4_2:7597850-7597869 Msa0586420:intron 30.0%
GGAAGGTTTGTGAATAAGTA+GGG + chr4_2:7595344-7595363 None:intergenic 35.0%
AAATTAGGGTTACATACCGA+GGG + chr4_2:7595409-7595428 None:intergenic 35.0%
!! AAATGGTGGATCAAAGATTC+AGG + chr4_2:7595465-7595484 None:intergenic 35.0%
! TTCTCAAGAGTATGAGGATA+AGG - chr4_2:7595781-7595800 Msa0586420:CDS 35.0%
CGGATTTATAGTGATAGTTC+TGG - chr4_2:7595851-7595870 Msa0586420:intron 35.0%
CTCACTAATCAATTGTGTTG+TGG - chr4_2:7595892-7595911 Msa0586420:intron 35.0%
! TGGATTTTATGTTGATCCAG+AGG - chr4_2:7595979-7595998 Msa0586420:CDS 35.0%
GCGAATAATAAACAAGAGCT+TGG + chr4_2:7596005-7596024 None:intergenic 35.0%
! TCAGATTGGATTAGAGTGTT+AGG - chr4_2:7596060-7596079 Msa0586420:intron 35.0%
AACATTAGACTAGAGAGAGT+TGG - chr4_2:7596183-7596202 Msa0586420:CDS 35.0%
ACATTAGACTAGAGAGAGTT+GGG - chr4_2:7596184-7596203 Msa0586420:CDS 35.0%
ACTTATAGTAGAAAAGACGG+TGG - chr4_2:7596213-7596232 Msa0586420:intron 35.0%
AGTCAAATCACTAGATGTAG+AGG - chr4_2:7596316-7596335 Msa0586420:intron 35.0%
CCTAATCCAATCTGAATCAA+CGG + chr4_2:7596497-7596516 None:intergenic 35.0%
!! CGTTGATTCAGATTGGATTA+GGG - chr4_2:7596495-7596514 Msa0586420:intron 35.0%
! GCAAAATTTTCCTTGTCTTG+GGG + chr4_2:7596894-7596913 None:intergenic 35.0%
TTGTTGGTATAAGAGCAGTT+TGG - chr4_2:7597108-7597127 Msa0586420:intron 35.0%
ATCTGTTGAGCAAACACATA+AGG + chr4_2:7597138-7597157 None:intergenic 35.0%
AACAATGAACATGTTGCACA+GGG - chr4_2:7597191-7597210 Msa0586420:intron 35.0%
! TTGAGCCTTATGTGACTTAT+GGG - chr4_2:7597214-7597233 Msa0586420:intron 35.0%
ACATACCCATAAGTCACATA+AGG + chr4_2:7597222-7597241 None:intergenic 35.0%
! ACCCAAATTTGAAGAGTGTA+AGG - chr4_2:7597325-7597344 Msa0586420:intron 35.0%
CCCTTACACTCTTCAAATTT+GGG + chr4_2:7597329-7597348 None:intergenic 35.0%
! CCCAAATTTGAAGAGTGTAA+GGG - chr4_2:7597326-7597345 Msa0586420:intron 35.0%
TCCCTTACACTCTTCAAATT+TGG + chr4_2:7597330-7597349 None:intergenic 35.0%
! ATAATTGAGTTGTCAGTGAG+AGG + chr4_2:7597399-7597418 None:intergenic 35.0%
TGACAACTCAATTATTGAGC+AGG - chr4_2:7597404-7597423 Msa0586420:intron 35.0%
TTGTTTGCTTCCTTGAAATG+TGG + chr4_2:7597581-7597600 None:intergenic 35.0%
ATTACATCAATGAGCTCATC+AGG - chr4_2:7597696-7597715 Msa0586420:CDS 35.0%
!! GGCTTTAGATCAAGATCAAT+TGG - chr4_2:7597781-7597800 Msa0586420:intron 35.0%
GGGAAGGTTTGTGAATAAGT+AGG + chr4_2:7595345-7595364 None:intergenic 40.0%
GAAATTAGGGTTACATACCG+AGG + chr4_2:7595410-7595429 None:intergenic 40.0%
TGTGTTGAAGAAGCAGAACA+GGG - chr4_2:7595661-7595680 Msa0586420:CDS 40.0%
! GCAGTATTCTCAAGAGTATG+AGG - chr4_2:7595775-7595794 Msa0586420:CDS 40.0%
!! GTTGATTAGTTTGAAGCGTG+AGG - chr4_2:7595943-7595962 Msa0586420:CDS 40.0%
CATTAGACTAGAGAGAGTTG+GGG - chr4_2:7596185-7596204 Msa0586420:CDS 40.0%
ATTAGACTAGAGAGAGTTGG+GGG - chr4_2:7596186-7596205 Msa0586420:CDS 40.0%
AGGAGAGTAGATTAGACAAC+AGG - chr4_2:7596292-7596311 Msa0586420:intron 40.0%
GGAGAGTAGATTAGACAACA+GGG - chr4_2:7596293-7596312 Msa0586420:intron 40.0%
CTTATCCCACTAAGTGAGAT+CGG + chr4_2:7596452-7596471 None:intergenic 40.0%
TCACTTAGTGGGATAAGGTT+TGG - chr4_2:7596455-7596474 Msa0586420:intron 40.0%
!! TGTTGTCCGTTGATTCAGAT+TGG - chr4_2:7596488-7596507 Msa0586420:intron 40.0%
!! CCGTTGATTCAGATTGGATT+AGG - chr4_2:7596494-7596513 Msa0586420:intron 40.0%
!! ATAAGGCGTTGTTAGCTTAG+CGG - chr4_2:7596563-7596582 Msa0586420:intron 40.0%
! TGCCTTGTTGTGTTTGTAGT+TGG - chr4_2:7596998-7597017 Msa0586420:intron 40.0%
! GCCTTGTTGTGTTTGTAGTT+GGG - chr4_2:7596999-7597018 Msa0586420:intron 40.0%
ACCCAACTACAAACACAACA+AGG + chr4_2:7597003-7597022 None:intergenic 40.0%
CAACAATGAACATGTTGCAC+AGG - chr4_2:7597190-7597209 Msa0586420:intron 40.0%
! GTTGAGCCTTATGTGACTTA+TGG - chr4_2:7597213-7597232 Msa0586420:intron 40.0%
!!! GAAAGCCTTTTGAGTGTTGA+AGG + chr4_2:7597290-7597309 None:intergenic 40.0%
CAAAGCAAGTCAGCAACATA+TGG + chr4_2:7597484-7597503 None:intergenic 40.0%
GGATAAGATCTTCAACGCAT+AGG + chr4_2:7597538-7597557 None:intergenic 40.0%
AGGAAGCAAACAACTTCCTT+TGG - chr4_2:7597588-7597607 Msa0586420:CDS 40.0%
AATGGAGCCTTAAGCTTGAA+CGG + chr4_2:7597614-7597633 None:intergenic 40.0%
TTCAAGCTTAAGGCTCCATT+GGG - chr4_2:7597614-7597633 Msa0586420:CDS 40.0%
TTCTTCTTTAAGCCACCCAA+TGG + chr4_2:7597632-7597651 None:intergenic 40.0%
AAGAGGAACCACTATGTTGA+AGG - chr4_2:7597650-7597669 Msa0586420:CDS 40.0%
! GATTTAAAGCTTATACCCGC+AGG - chr4_2:7597984-7598003 Msa0586420:five_prime_UTR 40.0%
GGAAATTCATTTACACCTGC+GGG + chr4_2:7598002-7598021 None:intergenic 40.0%
GGGAAATTCATTTACACCTG+CGG + chr4_2:7598003-7598022 None:intergenic 40.0%
AATGACTCTGCAGGTGCAAA+GGG + chr4_2:7595378-7595397 None:intergenic 45.0%
TGCTTCTTCAACACAGACTC+AGG + chr4_2:7595656-7595675 None:intergenic 45.0%
CTGTGTTGAAGAAGCAGAAC+AGG - chr4_2:7595660-7595679 Msa0586420:CDS 45.0%
AGCAGAACAGGGAAGAACAA+TGG - chr4_2:7595672-7595691 Msa0586420:CDS 45.0%
GCAGAACAGGGAAGAACAAT+GGG - chr4_2:7595673-7595692 Msa0586420:CDS 45.0%
GAGAACCGTAAGCTGATCTA+TGG - chr4_2:7595743-7595762 Msa0586420:CDS 45.0%
ATAAACAAGAGCTTGGCCTC+TGG + chr4_2:7595998-7596017 None:intergenic 45.0%
ACATGTAGAGTGAAGACCTG+TGG - chr4_2:7596258-7596277 Msa0586420:intron 45.0%
! GACCTGTGGATTTTGTAGCA+AGG - chr4_2:7596272-7596291 Msa0586420:intron 45.0%
CTCCTTGCTACAAAATCCAC+AGG + chr4_2:7596277-7596296 None:intergenic 45.0%
ACTAAGTGAGATCGGCTACA+TGG + chr4_2:7596444-7596463 None:intergenic 45.0%
ATGTAGCCGATCTCACTTAG+TGG - chr4_2:7596443-7596462 Msa0586420:CDS 45.0%
TGTAGCCGATCTCACTTAGT+GGG - chr4_2:7596444-7596463 Msa0586420:CDS 45.0%
CGATCTCACTTAGTGGGATA+AGG - chr4_2:7596450-7596469 Msa0586420:intron 45.0%
GCAACTGTTTCGATTGAGAC+AGG - chr4_2:7596912-7596931 Msa0586420:intron 45.0%
AGGGAACTCATCTACAAACG+TGG - chr4_2:7597345-7597364 Msa0586420:CDS 45.0%
GGGAACTCATCTACAAACGT+GGG - chr4_2:7597346-7597365 Msa0586420:CDS 45.0%
CTCATCTACAAACGTGGGTA+TGG - chr4_2:7597351-7597370 Msa0586420:CDS 45.0%
! ACTTGCTTTGATGACCCTCA+GGG - chr4_2:7597494-7597513 Msa0586420:intron 45.0%
ATCCACGAGATCTTGACTGT+TGG - chr4_2:7597554-7597573 Msa0586420:CDS 45.0%
GACTGTTGGACCACATTTCA+AGG - chr4_2:7597568-7597587 Msa0586420:CDS 45.0%
GTTCAAGCTTAAGGCTCCAT+TGG - chr4_2:7597613-7597632 Msa0586420:CDS 45.0%
TGGGTGGCTTAAAGAAGAAG+AGG - chr4_2:7597633-7597652 Msa0586420:CDS 45.0%
AGGAACCACTATGTTGAAGG+CGG - chr4_2:7597653-7597672 Msa0586420:CDS 45.0%
GAATGACTCTGCAGGTGCAA+AGG + chr4_2:7595379-7595398 None:intergenic 50.0%
GAGGAAGTGAATGACTCTGC+AGG + chr4_2:7595387-7595406 None:intergenic 50.0%
GAGTCATTCACTTCCTCCCT+CGG - chr4_2:7595390-7595409 Msa0586420:three_prime_UTR 50.0%
TTAGGGTTACATACCGAGGG+AGG + chr4_2:7595406-7595425 None:intergenic 50.0%
! CAGGGAAGAACAATGGGCTT+TGG - chr4_2:7595679-7595698 Msa0586420:CDS 50.0%
ACCGTAAGCTGATCTATGGC+AGG - chr4_2:7595747-7595766 Msa0586420:CDS 50.0%
CCCTGCCATAGATCAGCTTA+CGG + chr4_2:7595751-7595770 None:intergenic 50.0%
CCGTAAGCTGATCTATGGCA+GGG - chr4_2:7595748-7595767 Msa0586420:CDS 50.0%
GTCACTGCAGTGCTCTTGTT+TGG - chr4_2:7595814-7595833 Msa0586420:intron 50.0%
AAGCGTGAGGCTAAGCTGAA+AGG - chr4_2:7595956-7595975 Msa0586420:CDS 50.0%
TTTCCTTGTCTTGGGGTCCA+TGG + chr4_2:7596887-7596906 None:intergenic 50.0%
GTGGGTATGGAAAGCTAGAC+AGG - chr4_2:7597364-7597383 Msa0586420:CDS 50.0%
! GACTTGCTTTGATGACCCTC+AGG - chr4_2:7597493-7597512 Msa0586420:intron 50.0%
! TTTGATGACCCTCAGGGACT+GGG - chr4_2:7597500-7597519 Msa0586420:intron 50.0%
GTCCAACAGTCAAGATCTCG+TGG + chr4_2:7597559-7597578 None:intergenic 50.0%
CCTTAAGCTTGAACGGCCAA+AGG + chr4_2:7597607-7597626 None:intergenic 50.0%
CCTTTGGCCGTTCAAGCTTA+AGG - chr4_2:7597604-7597623 Msa0586420:CDS 50.0%
AAGCTTAAGGCTCCATTGGG+TGG - chr4_2:7597617-7597636 Msa0586420:CDS 50.0%
CATCACCGCCTTCAACATAG+TGG + chr4_2:7597661-7597680 None:intergenic 50.0%
TATGTTGAAGGCGGTGATGC+TGG - chr4_2:7597662-7597681 Msa0586420:CDS 50.0%
! AAAGGGTTTTCGCTGCGGGA+AGG + chr4_2:7595361-7595380 None:intergenic 55.0%
! GTGCAAAGGGTTTTCGCTGC+GGG + chr4_2:7595365-7595384 None:intergenic 55.0%
! GGTGCAAAGGGTTTTCGCTG+CGG + chr4_2:7595366-7595385 None:intergenic 55.0%
CGTGAGGCTAAGCTGAAAGG+TGG - chr4_2:7595959-7595978 Msa0586420:CDS 55.0%
ATGCCATGGACCCCAAGACA+AGG - chr4_2:7596881-7596900 Msa0586420:intron 55.0%
! CTTTGATGACCCTCAGGGAC+TGG - chr4_2:7597499-7597518 Msa0586420:intron 55.0%
CATGCTTTCCCAGTCCCTGA+GGG + chr4_2:7597511-7597530 None:intergenic 55.0%
CCATGCTTTCCCAGTCCCTG+AGG + chr4_2:7597512-7597531 None:intergenic 60.0%
CCTCAGGGACTGGGAAAGCA+TGG - chr4_2:7597509-7597528 Msa0586420:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 7595319 7598022 7595319 ID=Msa0586420;Name=Msa0586420
chr4_2 mRNA 7595319 7598022 7595319 ID=Msa0586420-mRNA-1;Parent=Msa0586420;Name=Msa0586420-mRNA-1;_AED=0.10;_eAED=0.10;_QI=95|0.66|0.71|1|1|0.85|7|292|246
chr4_2 exon 7595319 7595826 7595319 ID=Msa0586420-mRNA-1:exon:2007;Parent=Msa0586420-mRNA-1
chr4_2 exon 7595916 7596018 7595916 ID=Msa0586420-mRNA-1:exon:2006;Parent=Msa0586420-mRNA-1
chr4_2 exon 7596106 7596215 7596106 ID=Msa0586420-mRNA-1:exon:2005;Parent=Msa0586420-mRNA-1
chr4_2 exon 7596408 7596465 7596408 ID=Msa0586420-mRNA-1:exon:2004;Parent=Msa0586420-mRNA-1
chr4_2 exon 7597330 7597406 7597330 ID=Msa0586420-mRNA-1:exon:2003;Parent=Msa0586420-mRNA-1
chr4_2 exon 7597539 7597717 7597539 ID=Msa0586420-mRNA-1:exon:2002;Parent=Msa0586420-mRNA-1
chr4_2 exon 7597930 7598022 7597930 ID=Msa0586420-mRNA-1:exon:2001;Parent=Msa0586420-mRNA-1
chr4_2 five_prime_UTR 7597930 7598022 7597930 ID=Msa0586420-mRNA-1:five_prime_utr;Parent=Msa0586420-mRNA-1
chr4_2 five_prime_UTR 7597716 7597717 7597716 ID=Msa0586420-mRNA-1:five_prime_utr;Parent=Msa0586420-mRNA-1
chr4_2 CDS 7597539 7597715 7597539 ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1
chr4_2 CDS 7597330 7597406 7597330 ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1
chr4_2 CDS 7596408 7596465 7596408 ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1
chr4_2 CDS 7596106 7596215 7596106 ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1
chr4_2 CDS 7595916 7596018 7595916 ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1
chr4_2 CDS 7595611 7595826 7595611 ID=Msa0586420-mRNA-1:cds;Parent=Msa0586420-mRNA-1
chr4_2 three_prime_UTR 7595319 7595610 7595319 ID=Msa0586420-mRNA-1:three_prime_utr;Parent=Msa0586420-mRNA-1
Gene Sequence

>Msa0586420

ATGGGTGAAGAAGTGAAATCTATTGTTCCTGAGTCTGTGTTGAAGAAGCAGAACAGGGAAGAACAATGGGCTTTGGCTAAAACTCAAGAATTTGAAGCTGCTAAGAAGAAAAGAGCTGAGAACCGTAAGCTGATCTATGGCAGGGCTAAGCAGTATTCTCAAGAGTATGAGGATAAGGAAAGAGAGTTGATTAGTTTGAAGCGTGAGGCTAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCCAAGCTCTTTATTAATGCCATGGACCCCAAGACAAGGAAAATTTTGCAACTGTTTCGATTGAGACAGTTTGGTGATCCTTATGTGTTTGCTCAACAGATTTTCAATGGTGTTTTCCTTAAAGTTAATAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGGATACCCAAATTTGAAGAGTGTAAGGGAACTCATCTACAAACGTGGGTATGGAAAGCTAGACAGGCAGCGAACTCCTCTCACTGACAACTCAATTATTGAGCAGGGACTGGGAAAGCATGGTATCCTATGCGTTGAAGATCTTATCCACGAGATCTTGACTGTTGGACCACATTTCAAGGAAGCAAACAACTTCCTTTGGCCGTTCAAGCTTAAGGCTCCATTGGGTGGCTTAAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGATGCTGGAAACCGTGAAAATTACATCAATGAGCTCATCAGGAGAATGAATTAA

Protein sequence

>Msa0586420

MGEEVKSIVPESVLKKQNREEQWALAKTQEFEAAKKKRAENRKLIYGRAKQYSQEYEDKERELISLKREAKLKGGFYVDPEAKLFINAMDPKTRKILQLFRLRQFGDPYVFAQQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDRQRTPLTDNSIIEQGLGKHGILCVEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN*