Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260230 | XP_003597841.1 | 98.529 | 136 | 2 | 0 | 1 | 136 | 1 | 136 | 3.00e-94 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260230 | sp|Q9SSB8|CX5B2_ARATH | 59.740 | 154 | 43 | 4 | 1 | 136 | 1 | 153 | 1.24e-55 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260230 | G7IMH7 | 98.529 | 136 | 2 | 0 | 1 | 136 | 1 | 136 | 1.43e-94 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036610 | Msa0260230 | 0.818282 | 2.126529e-52 | -8.615850e-47 |
| Msa0094940 | Msa0260230 | 0.821686 | 3.538334e-53 | -8.615850e-47 |
| Msa0128320 | Msa0260230 | 0.804120 | 2.515462e-49 | -8.615850e-47 |
| Msa0130430 | Msa0260230 | 0.803865 | 2.842971e-49 | -8.615850e-47 |
| Msa0189080 | Msa0260230 | 0.825535 | 4.445999e-54 | -8.615850e-47 |
| Msa0260230 | Msa0260270 | 0.832477 | 9.242890e-56 | -8.615850e-47 |
| Msa0260230 | Msa0304270 | 0.857639 | 1.423664e-62 | -8.615850e-47 |
| Msa0260230 | Msa0304310 | 0.852936 | 3.328305e-61 | -8.615850e-47 |
| Msa0260230 | Msa0612840 | 0.832368 | 9.840544e-56 | -8.615850e-47 |
| Msa0260230 | Msa0962190 | 0.813252 | 2.812794e-51 | -8.615850e-47 |
| Msa0260230 | Msa0996830 | 0.831323 | 1.781180e-55 | -8.615850e-47 |
| Msa0260230 | Msa1069840 | 0.819258 | 1.276536e-52 | -8.615850e-47 |
| Msa0260230 | Msa1390390 | 0.806248 | 9.021839e-50 | -8.615850e-47 |
| Msa0260230 | Msa1443690 | 0.802549 | 5.323112e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260230 | MtrunA17_Chr2g0332571 | 98.529 | 136 | 2 | 0 | 1 | 136 | 1 | 136 | 2.76e-98 | 278 |
| Msa0260230 | MtrunA17_Chr4g0003811 | 73.571 | 140 | 27 | 4 | 1 | 135 | 1 | 135 | 4.55e-66 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0260230 | AT1G80230.1 | 59.740 | 154 | 43 | 4 | 1 | 136 | 1 | 153 | 1.26e-56 | 174 |
| Msa0260230 | AT3G15640.2 | 58.065 | 155 | 44 | 4 | 1 | 136 | 1 | 153 | 1.76e-50 | 159 |
| Msa0260230 | AT3G15640.1 | 57.419 | 155 | 46 | 3 | 1 | 136 | 1 | 154 | 1.41e-49 | 156 |
| Msa0260230 | AT1G52710.1 | 65.278 | 72 | 25 | 0 | 65 | 136 | 4 | 75 | 1.83e-33 | 113 |
Find 51 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATGATGTTGTCTGGTTT+TGG | 0.271011 | 2_2:-57759719 | Msa0260230:CDS |
| GAGAATGAGATGAAGAAGTT+AGG | 0.298612 | 2_2:+57762405 | None:intergenic |
| GACCACCCTGAAGGTCCTTT+TGG | 0.374661 | 2_2:-57761469 | Msa0260230:CDS |
| TTCGTGCCAAAAGGACCTTC+AGG | 0.388454 | 2_2:+57761463 | None:intergenic |
| CGTTCATGACCGGTAGCAAT+TGG | 0.405824 | 2_2:+57762203 | None:intergenic |
| TACTATAACAGAAGGATTGT+TGG | 0.415818 | 2_2:-57759885 | Msa0260230:CDS |
| GGCGACGTGGCGGCTGAGGC+CGG | 0.418601 | 2_2:+57762349 | None:intergenic |
| AGAATGAGATGAAGAAGTTA+GGG | 0.429164 | 2_2:+57762406 | None:intergenic |
| TGCACACACTGGACATTCAT+GGG | 0.432638 | 2_2:+57759680 | None:intergenic |
| GTGCACACACTGGACATTCA+TGG | 0.436671 | 2_2:+57759679 | None:intergenic |
| TGTTGGATGCCCCGGTGGTG+AGG | 0.446924 | 2_2:-57759868 | Msa0260230:CDS |
| CGCCACGTCGCCACACAATC+AGG | 0.449393 | 2_2:-57762338 | Msa0260230:intron |
| CACTTACCACCCTCACCACC+GGG | 0.451104 | 2_2:+57759858 | None:intergenic |
| CTTCAGGGTGGTCTATTTCA+AGG | 0.458207 | 2_2:+57761479 | None:intergenic |
| GGCGGCTGAGGCCGGCGAAT+CGG | 0.463992 | 2_2:+57762357 | None:intergenic |
| ACACTTACCACCCTCACCAC+CGG | 0.469692 | 2_2:+57759857 | None:intergenic |
| GTTGGATGCCCCGGTGGTGA+GGG | 0.475405 | 2_2:-57759867 | Msa0260230:CDS |
| GTGTGGCGACGTGGCGGCTG+AGG | 0.482725 | 2_2:+57762345 | None:intergenic |
| TTACTAACCTTCGTGCCAAA+AGG | 0.484133 | 2_2:+57761454 | None:intergenic |
| CATCCTCGATCCGCCATCGC+CGG | 0.488169 | 2_2:-57762383 | Msa0260230:CDS |
| GGTTGTGATTGTAGCTGGTT+CGG | 0.494202 | 2_2:-57762252 | Msa0260230:intron |
| AGGATGAGCATGATGTTGTC+TGG | 0.496376 | 2_2:-57759725 | Msa0260230:CDS |
| ATCGCCGGTCTCCGATTCGC+CGG | 0.509033 | 2_2:-57762368 | Msa0260230:CDS |
| GGCGAATCGGAGACCGGCGA+TGG | 0.510903 | 2_2:+57762370 | None:intergenic |
| TGAAAATACTGTGCACACAC+TGG | 0.523295 | 2_2:+57759669 | None:intergenic |
| AGAAGGATTGTTGGATGCCC+CGG | 0.526647 | 2_2:-57759876 | Msa0260230:CDS |
| TCGTGCCAAAAGGACCTTCA+GGG | 0.538959 | 2_2:+57761464 | None:intergenic |
| TTAAGTCTTACTATAACAGA+AGG | 0.543566 | 2_2:-57759893 | Msa0260230:CDS |
| GAGGCCGGCGAATCGGAGAC+CGG | 0.548914 | 2_2:+57762364 | None:intergenic |
| TAGTAAGACTTAACAACGGC+AGG | 0.550387 | 2_2:+57759903 | None:intergenic |
| AATCTCCTCACGTTCATGAC+CGG | 0.554757 | 2_2:+57762193 | None:intergenic |
| AACGATTCTCCGCCACATGA+TGG | 0.566084 | 2_2:+57762448 | None:intergenic |
| GGATGCCCCGGTGGTGAGGG+TGG | 0.570608 | 2_2:-57759864 | Msa0260230:intron |
| GATGTAGTTCCAATTGCTAC+CGG | 0.573966 | 2_2:-57762212 | Msa0260230:CDS |
| GAATCGGAGACCGGCGATGG+CGG | 0.584768 | 2_2:+57762373 | None:intergenic |
| AGACCGGCGATGGCGGATCG+AGG | 0.590908 | 2_2:+57762380 | None:intergenic |
| ATGATGGTGTTTGAGATCTA+CGG | 0.616818 | 2_2:+57762464 | None:intergenic |
| TGCTACCGGTCATGAACGTG+AGG | 0.630864 | 2_2:-57762198 | Msa0260230:CDS |
| TTCGGTGAAGAAGACAGTTG+AGG | 0.641042 | 2_2:-57762234 | Msa0260230:CDS |
| GGAGATTCAAGCTGATCTTG+AGG | 0.651732 | 2_2:-57762177 | Msa0260230:intron |
| CTTGAAATAGACCACCCTGA+AGG | 0.658668 | 2_2:-57761478 | Msa0260230:CDS |
| GCACACACTGGACATTCATG+GGG | 0.668546 | 2_2:+57759681 | None:intergenic |
| TACCTGATTGTGTGGCGACG+TGG | 0.669661 | 2_2:+57762336 | None:intergenic |
| AGATCTCAAACACCATCATG+TGG | 0.684707 | 2_2:-57762460 | Msa0260230:exon |
| AGTGAAGATACCTGATTGTG+TGG | 0.687822 | 2_2:+57762328 | None:intergenic |
| CTGATTGTGTGGCGACGTGG+CGG | 0.691244 | 2_2:+57762339 | None:intergenic |
| TCTCAAACACCATCATGTGG+CGG | 0.696333 | 2_2:-57762457 | Msa0260230:exon |
| AGGATTGTTGGATGCCCCGG+TGG | 0.708518 | 2_2:-57759873 | Msa0260230:CDS |
| TGCCAAAAGGACCTTCAGGG+TGG | 0.711901 | 2_2:+57761467 | None:intergenic |
| GTTATAGTAAGACTTAACAA+CGG | 0.724381 | 2_2:+57759899 | None:intergenic |
| ACTTACCACCCTCACCACCG+GGG | 0.749171 | 2_2:+57759859 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACACAAGTTATAAATAAAAA+TGG | + | chr2_2:57760083-57760102 | None:intergenic | 15.0% |
| !!! | TGATTTTAAATTTTAATCTG+AGG | - | chr2_2:57760210-57760229 | Msa0260230:intron | 15.0% |
| !! | CATTTAAAAACTTTAGTAAT+GGG | + | chr2_2:57760322-57760341 | None:intergenic | 15.0% |
| !! | ACATTTAAAAACTTTAGTAA+TGG | + | chr2_2:57760323-57760342 | None:intergenic | 15.0% |
| !!! | ACTAAAGTTTTTAAATGTTT+TGG | - | chr2_2:57760325-57760344 | Msa0260230:intron | 15.0% |
| !!! | CTAAAGTTTTTAAATGTTTT+GGG | - | chr2_2:57760326-57760345 | Msa0260230:intron | 15.0% |
| !!! | TAAAGTTTTTAAATGTTTTG+GGG | - | chr2_2:57760327-57760346 | Msa0260230:intron | 15.0% |
| !!! | TTTGTATTTTTTGTTTGTTT+AGG | - | chr2_2:57760617-57760636 | Msa0260230:intron | 15.0% |
| !!! | TTGTATTTTTTGTTTGTTTA+GGG | - | chr2_2:57760618-57760637 | Msa0260230:intron | 15.0% |
| !!! | AAAATCACTTTTCTAAATTA+AGG | + | chr2_2:57760865-57760884 | None:intergenic | 15.0% |
| !!! | TTAATTTAGAAAAGTGATTT+TGG | - | chr2_2:57760864-57760883 | Msa0260230:intron | 15.0% |
| !! | TTTATACTTTAATTACCTAA+AGG | - | chr2_2:57760934-57760953 | Msa0260230:intron | 15.0% |
| !! | TTATACTTTAATTACCTAAA+GGG | - | chr2_2:57760935-57760954 | Msa0260230:intron | 15.0% |
| !!! | TATTTAATCTTTTTGAAGTT+TGG | - | chr2_2:57761084-57761103 | Msa0260230:intron | 15.0% |
| !! | ATATATGATAGAACATTATA+GGG | - | chr2_2:57761195-57761214 | Msa0260230:intron | 15.0% |
| !!! | ATTTTTGAAGAATGATAATT+TGG | + | chr2_2:57761418-57761437 | None:intergenic | 15.0% |
| !!! | GATTTTGATGAATTTTGATT+TGG | - | chr2_2:57759856-57759875 | Msa0260230:intron | 20.0% |
| !! | ACAAAATGGAAAAATAAAAG+TGG | + | chr2_2:57760139-57760158 | None:intergenic | 20.0% |
| !!! | TTTAGTAATGGGATAATAAA+TGG | + | chr2_2:57760311-57760330 | None:intergenic | 20.0% |
| !! | TATTTCCAAAACTATAGTAA+TGG | - | chr2_2:57760389-57760408 | Msa0260230:intron | 20.0% |
| !!! | TTTGAAATAGCAACTATATT+GGG | + | chr2_2:57760453-57760472 | None:intergenic | 20.0% |
| !!! | TTTTGAAATAGCAACTATAT+TGG | + | chr2_2:57760454-57760473 | None:intergenic | 20.0% |
| !!! | CATATTATATAGGTTACTTT+TGG | - | chr2_2:57760574-57760593 | Msa0260230:intron | 20.0% |
| !!! | AATGGTTTTGGTTTATTTTT+TGG | - | chr2_2:57760836-57760855 | Msa0260230:intron | 20.0% |
| !!! | TGTGTTGTTAAAAATCATTA+TGG | - | chr2_2:57760908-57760927 | Msa0260230:intron | 20.0% |
| !!! | TTTTATCTTACAATTGAGTA+TGG | + | chr2_2:57761054-57761073 | None:intergenic | 20.0% |
| !! | CTCAATTGTAAGATAAAATA+TGG | - | chr2_2:57761056-57761075 | Msa0260230:intron | 20.0% |
| !! | AATAGTTTCTCTTTAAACTA+AGG | + | chr2_2:57761137-57761156 | None:intergenic | 20.0% |
| !! | GATATATGATAGAACATTAT+AGG | - | chr2_2:57761194-57761213 | Msa0260230:intron | 20.0% |
| !!! | TATTTTCTGTCTTTAAACTT+TGG | + | chr2_2:57761934-57761953 | None:intergenic | 20.0% |
| !! | AAAGTTTAAAGACAGAAAAT+AGG | - | chr2_2:57761933-57761952 | Msa0260230:intron | 20.0% |
| ! | ATTCATCAAAATCAAGAACA+AGG | + | chr2_2:57759849-57759868 | None:intergenic | 25.0% |
| ! | ATATCAGAATAAGAGTAGTT+CGG | + | chr2_2:57760182-57760201 | None:intergenic | 25.0% |
| !!! | CTTGTAAGATTTTTCAATCA+TGG | - | chr2_2:57760249-57760268 | Msa0260230:intron | 25.0% |
| ! | TTGAAATAGCAACTATATTG+GGG | + | chr2_2:57760452-57760471 | None:intergenic | 25.0% |
| ! | ACATTGTACTAAATAGCATA+TGG | - | chr2_2:57760475-57760494 | Msa0260230:intron | 25.0% |
| ! | GACAAGACTTCATATTATAT+AGG | - | chr2_2:57760564-57760583 | Msa0260230:intron | 25.0% |
| !!! | ATTTTTTGTTTGTTTAGGGA+AGG | - | chr2_2:57760622-57760641 | Msa0260230:intron | 25.0% |
| ! | ACAATATGAAGAATGAAACA+GGG | + | chr2_2:57760968-57760987 | None:intergenic | 25.0% |
| ! | TTCATTATTTCAGTTGCAAA+TGG | - | chr2_2:57761011-57761030 | Msa0260230:intron | 25.0% |
| ! | AAAGACAATGAGAATTAGAT+TGG | - | chr2_2:57761352-57761371 | Msa0260230:intron | 25.0% |
| ! | TTTGGAGGTAAAAAAATGTT+TGG | + | chr2_2:57761400-57761419 | None:intergenic | 25.0% |
| ! | TTTGAAGAATGATAATTTGG+AGG | + | chr2_2:57761415-57761434 | None:intergenic | 25.0% |
| !! | TACAAAACTGATTATTGACT+TGG | - | chr2_2:57761566-57761585 | Msa0260230:intron | 25.0% |
| !!! | TGATTATTGACTTGGAATTT+GGG | - | chr2_2:57761574-57761593 | Msa0260230:intron | 25.0% |
| !! | ATATAGGTATTGTAGATTGA+TGG | + | chr2_2:57761613-57761632 | None:intergenic | 25.0% |
| !! | TAAAGATGTTTTATGAAGGT+TGG | - | chr2_2:57761958-57761977 | Msa0260230:intron | 25.0% |
| ! | TTGAAGTTTCCAAAGTTTAA+AGG | - | chr2_2:57761922-57761941 | Msa0260230:intron | 25.0% |
| !! | CACATTTTTCCTTTAAACTT+TGG | + | chr2_2:57762066-57762085 | None:intergenic | 25.0% |
| ! | TGCTTAAAGATGTATTATGA+AGG | - | chr2_2:57762084-57762103 | Msa0260230:intron | 25.0% |
| ! | GTTATAGTAAGACTTAACAA+CGG | + | chr2_2:57762233-57762252 | None:intergenic | 25.0% |
| ! | TTAAGTCTTACTATAACAGA+AGG | - | chr2_2:57762236-57762255 | Msa0260230:CDS | 25.0% |
| !!! | AACTTGTTTTTTTAATGCAG+AGG | - | chr2_2:57762384-57762403 | Msa0260230:CDS | 25.0% |
| AGAATGAGATGAAGAAGTTA+GGG | + | chr2_2:57759726-57759745 | None:intergenic | 30.0% | |
| !! | GATTTTTCAATCATGGATAG+CGG | - | chr2_2:57760256-57760275 | Msa0260230:intron | 30.0% |
| TTGGGGTGAATAAAAAGATT+TGG | - | chr2_2:57760344-57760363 | Msa0260230:intron | 30.0% | |
| TTCCAAAACTATAGTAATGG+AGG | - | chr2_2:57760392-57760411 | Msa0260230:intron | 30.0% | |
| ! | TTCCTCCATTACTATAGTTT+TGG | + | chr2_2:57760397-57760416 | None:intergenic | 30.0% |
| ! | TATAGTAATGGAGGAAATGT+AGG | - | chr2_2:57760401-57760420 | Msa0260230:intron | 30.0% |
| GAAATGTAGGCAATAGAAAA+TGG | - | chr2_2:57760414-57760433 | Msa0260230:intron | 30.0% | |
| TTGTACTAAATAGCATATGG+TGG | - | chr2_2:57760478-57760497 | Msa0260230:intron | 30.0% | |
| ACAATTATATATGCAAGCTG+AGG | - | chr2_2:57760715-57760734 | Msa0260230:intron | 30.0% | |
| TTGGCAAAACTAATGTTGTT+TGG | - | chr2_2:57760883-57760902 | Msa0260230:intron | 30.0% | |
| GACAATATGAAGAATGAAAC+AGG | + | chr2_2:57760969-57760988 | None:intergenic | 30.0% | |
| ! | CAGTGCTTCTGTTAATTTTA+TGG | + | chr2_2:57761483-57761502 | None:intergenic | 30.0% |
| AAATTGCAAAGACATGTAGA+AGG | - | chr2_2:57761536-57761555 | Msa0260230:intron | 30.0% | |
| !! | CTGATTATTGACTTGGAATT+TGG | - | chr2_2:57761573-57761592 | Msa0260230:intron | 30.0% |
| GCTTCTGTATCGAATTATAT+AGG | + | chr2_2:57761629-57761648 | None:intergenic | 30.0% | |
| TGCTTACATTGGATATTCTT+TGG | - | chr2_2:57761740-57761759 | Msa0260230:intron | 30.0% | |
| TGAGGATATTGGTAAATTGT+TGG | - | chr2_2:57761772-57761791 | Msa0260230:intron | 30.0% | |
| AAAACATGTATTAGACAACG+TGG | + | chr2_2:57762160-57762179 | None:intergenic | 30.0% | |
| TACTATAACAGAAGGATTGT+TGG | - | chr2_2:57762244-57762263 | Msa0260230:intron | 30.0% | |
| TGGTGATAAGTACTAGAATT+TGG | - | chr2_2:57762340-57762359 | Msa0260230:CDS | 30.0% | |
| ! | ATGAAGAAGTTAGGGTTTTG+AGG | + | chr2_2:57759718-57759737 | None:intergenic | 35.0% |
| GAGAATGAGATGAAGAAGTT+AGG | + | chr2_2:57759727-57759746 | None:intergenic | 35.0% | |
| GGCATAGGAAATTGACAAAA+TGG | + | chr2_2:57760153-57760172 | None:intergenic | 35.0% | |
| ATAAGAGTAGTTCGGATTCA+AGG | + | chr2_2:57760174-57760193 | None:intergenic | 35.0% | |
| ATAGCAACTATATTGGGGTT+AGG | + | chr2_2:57760447-57760466 | None:intergenic | 35.0% | |
| CAACTAATTCACACACACAT+AGG | + | chr2_2:57760785-57760804 | None:intergenic | 35.0% | |
| ! | GTGTGAATTAGTTGTTTCCA+AGG | - | chr2_2:57760791-57760810 | Msa0260230:intron | 35.0% |
| !! | TTCCAAGGTTGATTTTGATG+TGG | - | chr2_2:57760806-57760825 | Msa0260230:intron | 35.0% |
| !! | TCCAAGGTTGATTTTGATGT+GGG | - | chr2_2:57760807-57760826 | Msa0260230:intron | 35.0% |
| TAAGAAAGACCCAGAGATTA+AGG | - | chr2_2:57761156-57761175 | Msa0260230:intron | 35.0% | |
| CTATCAACTCCTTAATCTCT+GGG | + | chr2_2:57761168-57761187 | None:intergenic | 35.0% | |
| TCTATCAACTCCTTAATCTC+TGG | + | chr2_2:57761169-57761188 | None:intergenic | 35.0% | |
| GATCTTATAATACCATCCCT+AGG | + | chr2_2:57761331-57761350 | None:intergenic | 35.0% | |
| ! | ATTCTTTGGAAGTAAGCATG+AGG | - | chr2_2:57761754-57761773 | Msa0260230:intron | 35.0% |
| ! | GGCGTAAAGATGTTTTATGA+AGG | - | chr2_2:57761954-57761973 | Msa0260230:intron | 35.0% |
| ACAGATTCGTAAAGAAAGAC+AGG | + | chr2_2:57762300-57762319 | None:intergenic | 35.0% | |
| CTTATCACCAGATTGTGAAA+AGG | + | chr2_2:57762330-57762349 | None:intergenic | 35.0% | |
| AGATCTCAAACACCATCATG+TGG | - | chr2_2:57759669-57759688 | Msa0260230:CDS | 40.0% | |
| AGTGAAGATACCTGATTGTG+TGG | + | chr2_2:57759804-57759823 | None:intergenic | 40.0% | |
| ! | GATTTGGTTGTGATTGTAGC+TGG | - | chr2_2:57759872-57759891 | Msa0260230:CDS | 40.0% |
| GATGTAGTTCCAATTGCTAC+CGG | - | chr2_2:57759917-57759936 | Msa0260230:intron | 40.0% | |
| GAAAACCACTATAGCGAGTT+AGG | - | chr2_2:57760278-57760297 | Msa0260230:intron | 40.0% | |
| AGTATCCTAACTCGCTATAG+TGG | + | chr2_2:57760286-57760305 | None:intergenic | 40.0% | |
| GTAGGCAATAGAAAATGGAG+AGG | - | chr2_2:57760419-57760438 | Msa0260230:intron | 40.0% | |
| ! | AGCATATGGTGGAACAATAG+TGG | - | chr2_2:57760489-57760508 | Msa0260230:intron | 40.0% |
| ! | GTGGAACAATAGTGGTTTGT+TGG | - | chr2_2:57760497-57760516 | Msa0260230:intron | 40.0% |
| CTATAAGCGCAATACCTCTA+TGG | + | chr2_2:57760535-57760554 | None:intergenic | 40.0% | |
| TTACTAACCTTCGTGCCAAA+AGG | + | chr2_2:57760678-57760697 | None:intergenic | 40.0% | |
| ACCCACATCAAAATCAACCT+TGG | + | chr2_2:57760811-57760830 | None:intergenic | 40.0% | |
| !! | GTTGATTTTGATGTGGGTTG+CGG | - | chr2_2:57760813-57760832 | Msa0260230:intron | 40.0% |
| ! | GGCTTGGTTGTTGTTGTATA+CGG | - | chr2_2:57761257-57761276 | Msa0260230:intron | 40.0% |
| GTTATAACTCAGTGAAGGGT+AGG | + | chr2_2:57761298-57761317 | None:intergenic | 40.0% | |
| ! | GGGTGTTATAACTCAGTGAA+GGG | + | chr2_2:57761302-57761321 | None:intergenic | 40.0% |
| ! | TGGGTGTTATAACTCAGTGA+AGG | + | chr2_2:57761303-57761322 | None:intergenic | 40.0% |
| TTATAACACCCAAGTCTCCT+AGG | - | chr2_2:57761311-57761330 | Msa0260230:intron | 40.0% | |
| TATAACACCCAAGTCTCCTA+GGG | - | chr2_2:57761312-57761331 | Msa0260230:intron | 40.0% | |
| TCGATACAGAAGCAATCTTC+TGG | - | chr2_2:57761636-57761655 | Msa0260230:intron | 40.0% | |
| GGATGCTAAGTTGCTTACAT+TGG | - | chr2_2:57761729-57761748 | Msa0260230:intron | 40.0% | |
| GGAAGTAAGCATGAGGATAT+TGG | - | chr2_2:57761761-57761780 | Msa0260230:intron | 40.0% | |
| !! | GAGGATAGCAACTTGTTAAC+AGG | + | chr2_2:57761799-57761818 | None:intergenic | 40.0% |
| CTCAATTACTTCACCGTACT+CGG | - | chr2_2:57761816-57761835 | Msa0260230:intron | 40.0% | |
| TAACCATGGCTGGAAAATCA+AGG | - | chr2_2:57761988-57762007 | Msa0260230:intron | 40.0% | |
| AACCATGGCTGGAAAATCAA+GGG | - | chr2_2:57761989-57762008 | Msa0260230:intron | 40.0% | |
| TGTCTGCTTTCGCTGTTTAT+AGG | - | chr2_2:57762198-57762217 | Msa0260230:CDS | 40.0% | |
| TAGTAAGACTTAACAACGGC+AGG | + | chr2_2:57762229-57762248 | None:intergenic | 40.0% | |
| ! | GTGCAAACCTTTTCACAATC+TGG | - | chr2_2:57762320-57762339 | Msa0260230:intron | 40.0% |
| !! | AGCATGATGTTGTCTGGTTT+TGG | - | chr2_2:57762410-57762429 | Msa0260230:CDS | 40.0% |
| TGAAAATACTGTGCACACAC+TGG | + | chr2_2:57762463-57762482 | None:intergenic | 40.0% | |
| TCTCAAACACCATCATGTGG+CGG | - | chr2_2:57759672-57759691 | Msa0260230:CDS | 45.0% | |
| !!! | GAAGTTAGGGTTTTGAGGTG+AGG | + | chr2_2:57759713-57759732 | None:intergenic | 45.0% |
| GGTTGTGATTGTAGCTGGTT+CGG | - | chr2_2:57759877-57759896 | Msa0260230:CDS | 45.0% | |
| TTCGGTGAAGAAGACAGTTG+AGG | - | chr2_2:57759895-57759914 | Msa0260230:CDS | 45.0% | |
| AATCTCCTCACGTTCATGAC+CGG | + | chr2_2:57759939-57759958 | None:intergenic | 45.0% | |
| GGAGATTCAAGCTGATCTTG+AGG | - | chr2_2:57759952-57759971 | Msa0260230:intron | 45.0% | |
| GTAGTTCGGATTCAAGGCAT+AGG | + | chr2_2:57760168-57760187 | None:intergenic | 45.0% | |
| GGAATTCTGCTACACCATAG+AGG | - | chr2_2:57760518-57760537 | Msa0260230:intron | 45.0% | |
| CTTCAGGGTGGTCTATTTCA+AGG | + | chr2_2:57760653-57760672 | None:intergenic | 45.0% | |
| CTTGAAATAGACCACCCTGA+AGG | - | chr2_2:57760651-57760670 | Msa0260230:intron | 45.0% | |
| !! | TTTTGATGTGGGTTGCGGAA+TGG | - | chr2_2:57760818-57760837 | Msa0260230:intron | 45.0% |
| AACAGGGACTCATACCCTTT+AGG | + | chr2_2:57760952-57760971 | None:intergenic | 45.0% | |
| ! | GGTTGGCTACATGGATCAAA+CGG | + | chr2_2:57761221-57761240 | None:intergenic | 45.0% |
| ! | AAGCCTTATCCCACTAAGCA+GGG | + | chr2_2:57761242-57761261 | None:intergenic | 45.0% |
| AAGGGTAGGTAGGAAGACTA+GGG | + | chr2_2:57761284-57761303 | None:intergenic | 45.0% | |
| TAACTCAGTGAAGGGTAGGT+AGG | + | chr2_2:57761294-57761313 | None:intergenic | 45.0% | |
| ATACCATCCCTAGGAGACTT+GGG | + | chr2_2:57761322-57761341 | None:intergenic | 45.0% | |
| AATACCATCCCTAGGAGACT+TGG | + | chr2_2:57761323-57761342 | None:intergenic | 45.0% | |
| TGCAAAGACATGTAGAAGGC+TGG | - | chr2_2:57761540-57761559 | Msa0260230:intron | 45.0% | |
| CGAGTACGGTGAAGTAATTG+AGG | + | chr2_2:57761818-57761837 | None:intergenic | 45.0% | |
| TCACCTCTTACAACCGAGTA+CGG | + | chr2_2:57761832-57761851 | None:intergenic | 45.0% | |
| TAAGAGGTGAAGAGTAACCG+TGG | - | chr2_2:57761842-57761861 | Msa0260230:intron | 45.0% | |
| TAACCGTGGCTGGAAAATCA+AGG | - | chr2_2:57761856-57761875 | Msa0260230:intron | 45.0% | |
| AACCGTGGCTGGAAAATCAA+GGG | - | chr2_2:57761857-57761876 | Msa0260230:intron | 45.0% | |
| !! | AGGTTGGTGAAGAGTAACCA+TGG | - | chr2_2:57761974-57761993 | Msa0260230:intron | 45.0% |
| ACCATGGCTGGAAAATCAAG+GGG | - | chr2_2:57761990-57762009 | Msa0260230:intron | 45.0% | |
| AGGATGAGCATGATGTTGTC+TGG | - | chr2_2:57762404-57762423 | Msa0260230:CDS | 45.0% | |
| !!! | TGATGTTGTCTGGTTTTGGC+TGG | - | chr2_2:57762414-57762433 | Msa0260230:CDS | 45.0% |
| TGCACACACTGGACATTCAT+GGG | + | chr2_2:57762452-57762471 | None:intergenic | 45.0% | |
| !! | TGTATTAAATATATTAAATT+TGG | - | chr2_2:57761708-57761727 | Msa0260230:intron | 5.0% |
| AACGATTCTCCGCCACATGA+TGG | + | chr2_2:57759684-57759703 | None:intergenic | 50.0% | |
| CGTTCATGACCGGTAGCAAT+TGG | + | chr2_2:57759929-57759948 | None:intergenic | 50.0% | |
| TCGTGCCAAAAGGACCTTCA+GGG | + | chr2_2:57760668-57760687 | None:intergenic | 50.0% | |
| TTCGTGCCAAAAGGACCTTC+AGG | + | chr2_2:57760669-57760688 | None:intergenic | 50.0% | |
| ! | TGAAGGTCCTTTTGGCACGA+AGG | - | chr2_2:57760668-57760687 | Msa0260230:intron | 50.0% |
| !! | TGTGGGTTGCGGAATGGTTT+TGG | - | chr2_2:57760824-57760843 | Msa0260230:intron | 50.0% |
| !! | ACTAAGCAGGGTTGGCTACA+TGG | + | chr2_2:57761230-57761249 | None:intergenic | 50.0% |
| ATGTAGCCAACCCTGCTTAG+TGG | - | chr2_2:57761229-57761248 | Msa0260230:intron | 50.0% | |
| TGTAGCCAACCCTGCTTAGT+GGG | - | chr2_2:57761230-57761249 | Msa0260230:intron | 50.0% | |
| CTTATCCCACTAAGCAGGGT+TGG | + | chr2_2:57761238-57761257 | None:intergenic | 50.0% | |
| CAACCCTGCTTAGTGGGATA+AGG | - | chr2_2:57761236-57761255 | Msa0260230:intron | 50.0% | |
| ! | CAAGCCTTATCCCACTAAGC+AGG | + | chr2_2:57761243-57761262 | None:intergenic | 50.0% |
| CTGCTTAGTGGGATAAGGCT+TGG | - | chr2_2:57761241-57761260 | Msa0260230:intron | 50.0% | |
| GAAGGGTAGGTAGGAAGACT+AGG | + | chr2_2:57761285-57761304 | None:intergenic | 50.0% | |
| TCACCGTACTCGGTTGTAAG+AGG | - | chr2_2:57761826-57761845 | Msa0260230:intron | 50.0% | |
| ACCGTGGCTGGAAAATCAAG+GGG | - | chr2_2:57761858-57761877 | Msa0260230:intron | 50.0% | |
| ! | ACCCCTTGATTTTCCAGCCA+CGG | + | chr2_2:57761862-57761881 | None:intergenic | 50.0% |
| TGGTGAAGAGTAACCATGGC+TGG | - | chr2_2:57761978-57761997 | Msa0260230:intron | 50.0% | |
| ! | ACCCCTTGATTTTCCAGCCA+TGG | + | chr2_2:57761862-57761881 | None:intergenic | 50.0% |
| AGAAGGATTGTTGGATGCCC+CGG | - | chr2_2:57762253-57762272 | Msa0260230:intron | 50.0% | |
| !!! | TGTTGTCTGGTTTTGGCTGG+AGG | - | chr2_2:57762417-57762436 | Msa0260230:CDS | 50.0% |
| GCACACACTGGACATTCATG+GGG | + | chr2_2:57762451-57762470 | None:intergenic | 50.0% | |
| GTGCACACACTGGACATTCA+TGG | + | chr2_2:57762453-57762472 | None:intergenic | 50.0% | |
| TACCTGATTGTGTGGCGACG+TGG | + | chr2_2:57759796-57759815 | None:intergenic | 55.0% | |
| TGCTACCGGTCATGAACGTG+AGG | - | chr2_2:57759931-57759950 | Msa0260230:intron | 55.0% | |
| ! | GACCACCCTGAAGGTCCTTT+TGG | - | chr2_2:57760660-57760679 | Msa0260230:intron | 55.0% |
| TGCCAAAAGGACCTTCAGGG+TGG | + | chr2_2:57760665-57760684 | None:intergenic | 55.0% | |
| ACACCCAAGTCTCCTAGGGA+TGG | - | chr2_2:57761316-57761335 | Msa0260230:intron | 55.0% | |
| AGGTGAAGAGTAACCGTGGC+TGG | - | chr2_2:57761846-57761865 | Msa0260230:intron | 55.0% | |
| ACACTTACCACCCTCACCAC+CGG | + | chr2_2:57762275-57762294 | None:intergenic | 55.0% | |
| !!! | GTCTGGTTTTGGCTGGAGGA+AGG | - | chr2_2:57762421-57762440 | Msa0260230:CDS | 55.0% |
| CTGATTGTGTGGCGACGTGG+CGG | + | chr2_2:57759793-57759812 | None:intergenic | 60.0% | |
| AGGATTGTTGGATGCCCCGG+TGG | - | chr2_2:57762256-57762275 | Msa0260230:intron | 60.0% | |
| ACTTACCACCCTCACCACCG+GGG | + | chr2_2:57762273-57762292 | None:intergenic | 60.0% | |
| CACTTACCACCCTCACCACC+GGG | + | chr2_2:57762274-57762293 | None:intergenic | 60.0% | |
| CATCCTCGATCCGCCATCGC+CGG | - | chr2_2:57759746-57759765 | Msa0260230:intron | 65.0% | |
| GAATCGGAGACCGGCGATGG+CGG | + | chr2_2:57759759-57759778 | None:intergenic | 65.0% | |
| ! | ATCGCCGGTCTCCGATTCGC+CGG | - | chr2_2:57759761-57759780 | Msa0260230:intron | 65.0% |
| CGCCACGTCGCCACACAATC+AGG | - | chr2_2:57759791-57759810 | Msa0260230:intron | 65.0% | |
| TGTTGGATGCCCCGGTGGTG+AGG | - | chr2_2:57762261-57762280 | Msa0260230:intron | 65.0% | |
| GTTGGATGCCCCGGTGGTGA+GGG | - | chr2_2:57762262-57762281 | Msa0260230:intron | 65.0% | |
| !! | AGACCGGCGATGGCGGATCG+AGG | + | chr2_2:57759752-57759771 | None:intergenic | 70.0% |
| GGCGAATCGGAGACCGGCGA+TGG | + | chr2_2:57759762-57759781 | None:intergenic | 70.0% | |
| GAGGCCGGCGAATCGGAGAC+CGG | + | chr2_2:57759768-57759787 | None:intergenic | 70.0% | |
| GGCGGCTGAGGCCGGCGAAT+CGG | + | chr2_2:57759775-57759794 | None:intergenic | 75.0% | |
| GTGTGGCGACGTGGCGGCTG+AGG | + | chr2_2:57759787-57759806 | None:intergenic | 75.0% | |
| GGATGCCCCGGTGGTGAGGG+TGG | - | chr2_2:57762265-57762284 | Msa0260230:intron | 75.0% | |
| ! | GGCGACGTGGCGGCTGAGGC+CGG | + | chr2_2:57759783-57759802 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 57759668 | 57762483 | 57759668 | ID=Msa0260230;Name=Msa0260230 |
| chr2_2 | mRNA | 57759668 | 57762483 | 57759668 | ID=Msa0260230-mRNA-1;Parent=Msa0260230;Name=Msa0260230-mRNA-1;_AED=0.16;_eAED=0.16;_QI=18|1|0.8|1|1|1|5|0|136 |
| chr2_2 | exon | 57759668 | 57759747 | 57759668 | ID=Msa0260230-mRNA-1:exon:17603;Parent=Msa0260230-mRNA-1 |
| chr2_2 | exon | 57759865 | 57759931 | 57759865 | ID=Msa0260230-mRNA-1:exon:17602;Parent=Msa0260230-mRNA-1 |
| chr2_2 | exon | 57761462 | 57761512 | 57761462 | ID=Msa0260230-mRNA-1:exon:17601;Parent=Msa0260230-mRNA-1 |
| chr2_2 | exon | 57762178 | 57762260 | 57762178 | ID=Msa0260230-mRNA-1:exon:17600;Parent=Msa0260230-mRNA-1 |
| chr2_2 | exon | 57762339 | 57762483 | 57762339 | ID=Msa0260230-mRNA-1:exon:17599;Parent=Msa0260230-mRNA-1 |
| chr2_2 | five_prime_UTR | 57762466 | 57762483 | 57762466 | ID=Msa0260230-mRNA-1:five_prime_utr;Parent=Msa0260230-mRNA-1 |
| chr2_2 | CDS | 57762339 | 57762465 | 57762339 | ID=Msa0260230-mRNA-1:cds;Parent=Msa0260230-mRNA-1 |
| chr2_2 | CDS | 57762178 | 57762260 | 57762178 | ID=Msa0260230-mRNA-1:cds;Parent=Msa0260230-mRNA-1 |
| chr2_2 | CDS | 57761462 | 57761512 | 57761462 | ID=Msa0260230-mRNA-1:cds;Parent=Msa0260230-mRNA-1 |
| chr2_2 | CDS | 57759865 | 57759931 | 57759865 | ID=Msa0260230-mRNA-1:cds;Parent=Msa0260230-mRNA-1 |
| chr2_2 | CDS | 57759668 | 57759747 | 57759668 | ID=Msa0260230-mRNA-1:cds;Parent=Msa0260230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
