Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381580 | XP_003603135.1 | 92.405 | 474 | 9 | 3 | 1 | 450 | 1 | 471 | 0.0 | 885 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381580 | sp|P42044|HEMH_CUCSA | 67.527 | 465 | 113 | 6 | 17 | 450 | 33 | 490 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381580 | G7J7L6 | 92.405 | 474 | 9 | 3 | 1 | 450 | 1 | 471 | 0.0 | 885 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084360 | Msa0381580 | 0.800350 | 1.502189e-48 | -8.615850e-47 |
| Msa0101320 | Msa0381580 | 0.846451 | 2.154589e-59 | -8.615850e-47 |
| Msa0131310 | Msa0381580 | 0.812585 | 3.936669e-51 | -8.615850e-47 |
| Msa0140530 | Msa0381580 | 0.974082 | 1.562217e-137 | -8.615850e-47 |
| Msa0141110 | Msa0381580 | 0.808809 | 2.580015e-50 | -8.615850e-47 |
| Msa0146050 | Msa0381580 | 0.817168 | 3.791938e-52 | -8.615850e-47 |
| Msa0216810 | Msa0381580 | 0.807449 | 5.027066e-50 | -8.615850e-47 |
| Msa0374860 | Msa0381580 | 0.810124 | 1.347005e-50 | -8.615850e-47 |
| Msa0375080 | Msa0381580 | 0.802898 | 4.509855e-49 | -8.615850e-47 |
| Msa0381580 | Msa0428510 | 0.831628 | 1.498535e-55 | -8.615850e-47 |
| Msa0381580 | Msa0470350 | 0.849670 | 2.786639e-60 | -8.615850e-47 |
| Msa0381580 | Msa0470870 | 0.829171 | 5.975910e-55 | -8.615850e-47 |
| Msa0381580 | Msa0621720 | 0.810046 | 1.400209e-50 | -8.615850e-47 |
| Msa0381580 | Msa0659800 | 0.870261 | 1.668049e-66 | -8.615850e-47 |
| Msa0381580 | Msa0690170 | -0.822611 | 2.159563e-53 | -8.615850e-47 |
| Msa0381580 | Msa0694690 | 0.823811 | 1.132989e-53 | -8.615850e-47 |
| Msa0381580 | Msa0698600 | -0.800615 | 1.326610e-48 | -8.615850e-47 |
| Msa0381580 | Msa0703720 | -0.805907 | 1.064075e-49 | -8.615850e-47 |
| Msa0381580 | Msa0766100 | 0.815015 | 1.147975e-51 | -8.615850e-47 |
| Msa0381580 | Msa0813320 | 0.807585 | 4.703806e-50 | -8.615850e-47 |
| Msa0381580 | Msa1018020 | 0.812920 | 3.325006e-51 | -8.615850e-47 |
| Msa0381580 | Msa1156360 | 0.803235 | 3.839805e-49 | -8.615850e-47 |
| Msa0381580 | Msa1171060 | 0.848848 | 4.719630e-60 | -8.615850e-47 |
| Msa0381580 | Msa1332140 | 0.802639 | 5.098752e-49 | -8.615850e-47 |
| Msa0381580 | Msa1444430 | 0.803083 | 4.129457e-49 | -8.615850e-47 |
| Msa0283570 | Msa0381580 | 0.801360 | 9.342633e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381580 | MtrunA17_Chr3g0135611 | 92.405 | 474 | 9 | 3 | 1 | 450 | 1 | 471 | 0.0 | 885 |
| Msa0381580 | MtrunA17_Chr4g0008821 | 84.144 | 473 | 40 | 3 | 2 | 450 | 13 | 474 | 0.0 | 769 |
| Msa0381580 | MtrunA17_Chr3g0131031 | 58.645 | 428 | 145 | 4 | 4 | 404 | 22 | 444 | 1.62e-170 | 489 |
| Msa0381580 | MtrunA17_Chr8g0385271 | 59.420 | 414 | 131 | 4 | 16 | 404 | 43 | 444 | 3.08e-170 | 488 |
| Msa0381580 | MtrunA17_Chr7g0235891 | 55.224 | 67 | 28 | 1 | 338 | 404 | 75 | 139 | 1.39e-13 | 68.2 |
| Msa0381580 | MtrunA17_Chr4g0045871 | 64.444 | 45 | 14 | 1 | 367 | 409 | 5 | 49 | 7.76e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381580 | AT5G26030.1 | 64.097 | 454 | 127 | 7 | 22 | 447 | 20 | 465 | 0.0 | 572 |
| Msa0381580 | AT5G26030.2 | 64.097 | 454 | 127 | 7 | 22 | 447 | 20 | 465 | 0.0 | 572 |
| Msa0381580 | AT2G30390.1 | 67.976 | 331 | 82 | 1 | 98 | 404 | 100 | 430 | 2.20e-163 | 471 |
| Msa0381580 | AT2G30390.2 | 65.982 | 341 | 82 | 1 | 98 | 404 | 100 | 440 | 5.55e-162 | 468 |
Find 143 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGACTCTTCACACCTTTC+TGG | 0.158781 | 3_1:-83804678 | None:intergenic |
| CCTGAACGCAGTTATCATTT+TGG | 0.188485 | 3_1:-83805085 | None:intergenic |
| TGCAGGCACTTGCACTTAAA+AGG | 0.200725 | 3_1:+83803432 | Msa0381580:intron |
| GCATATGCTTCCTTGGATTT+AGG | 0.213761 | 3_1:-83802980 | None:intergenic |
| GAACATATTCGTTCGTGATT+TGG | 0.259393 | 3_1:+83801394 | Msa0381580:five_prime_UTR |
| TGAGCACACTCTTGCTTATC+AGG | 0.263907 | 3_1:+83804435 | Msa0381580:CDS |
| AGATGTTATTAAAAGGAAAA+TGG | 0.299797 | 3_1:-83801468 | None:intergenic |
| ATCTTGGCGAAGTATTTAAC+TGG | 0.311532 | 3_1:-83805021 | None:intergenic |
| ACTAGGACTTCATCTGTATA+TGG | 0.311851 | 3_1:-83804646 | None:intergenic |
| TGAGCGAGAAACTAAGTTTC+TGG | 0.314149 | 3_1:-83802008 | None:intergenic |
| TGGGTCAAGCATCAGTGTTC+TGG | 0.320253 | 3_1:+83803786 | Msa0381580:CDS |
| TTGAATCTGGCATCAAGAAT+TGG | 0.321498 | 3_1:+83804869 | Msa0381580:CDS |
| TTGATACCAAGAGTTTATAA+TGG | 0.330575 | 3_1:-83803967 | None:intergenic |
| ACATCTATGAAATCAAATTC+AGG | 0.348405 | 3_1:-83805133 | None:intergenic |
| AGTACAAGTGGTAAACTGTT+TGG | 0.352485 | 3_1:-83805321 | None:intergenic |
| TGGGCACGTGTCCCGGCTCT+TGG | 0.364586 | 3_1:+83804889 | Msa0381580:CDS |
| TCTGGTGCCAATTCTTGTAT+TGG | 0.377066 | 3_1:-83801990 | None:intergenic |
| ATCAAAGAGAAGGTTATATT+AGG | 0.378881 | 3_1:+83803985 | Msa0381580:CDS |
| GGCTCGACCAATACAAGAAT+TGG | 0.380637 | 3_1:+83801983 | Msa0381580:CDS |
| TACCAGCACCTCTGAAGATA+TGG | 0.387408 | 3_1:+83804990 | Msa0381580:CDS |
| GCAACACACCAACTTTATCT+TGG | 0.387419 | 3_1:-83802096 | None:intergenic |
| TTCGGCTCCCAAGATTGTTT+CGG | 0.387788 | 3_1:+83802912 | Msa0381580:CDS |
| AGGGAATTGGCTCTTGAATC+TGG | 0.388268 | 3_1:+83804856 | Msa0381580:CDS |
| CAGTAGTGGATATAGAAAAC+TGG | 0.391052 | 3_1:-83803765 | None:intergenic |
| AAGGAAGCATATGCTTCTAT+TGG | 0.393699 | 3_1:+83802989 | Msa0381580:CDS |
| GTACAAGTGGTAAACTGTTT+GGG | 0.408812 | 3_1:-83805320 | None:intergenic |
| AATAGAAGCATATGCTTCCT+TGG | 0.409366 | 3_1:-83802987 | None:intergenic |
| TGGAGAAACCGAAACAATCT+TGG | 0.415074 | 3_1:-83802920 | None:intergenic |
| CAAGAGTTTATAATGGAAAC+AGG | 0.416911 | 3_1:-83803960 | None:intergenic |
| TGAATCTGGCATCAAGAATT+GGG | 0.420289 | 3_1:+83804870 | Msa0381580:CDS |
| TGAACATCGTCCAGCGTCTC+TGG | 0.424583 | 3_1:-83802136 | None:intergenic |
| CCAAAATGATAACTGCGTTC+AGG | 0.426212 | 3_1:+83805085 | Msa0381580:CDS |
| GTGAAAATCTGCAGCGATGA+AGG | 0.431459 | 3_1:-83801603 | None:intergenic |
| TGACATGGAGTACAGGGAAT+TGG | 0.432816 | 3_1:+83804843 | Msa0381580:CDS |
| ACTTGCACTTAAAAGGGCTT+TGG | 0.433467 | 3_1:+83803439 | Msa0381580:CDS |
| GTGTTCTGGAGCAAACGTTC+AGG | 0.435038 | 3_1:+83803800 | Msa0381580:CDS |
| CTGTTTCCATTATAAACTCT+TGG | 0.436093 | 3_1:+83803961 | Msa0381580:CDS |
| TCTATGTTGGGATGCGGTAC+TGG | 0.440002 | 3_1:+83803486 | Msa0381580:CDS |
| ATCCATATCTTCAGAGGTGC+TGG | 0.440328 | 3_1:-83804992 | None:intergenic |
| CTCTCTTCAAATATCTATGT+TGG | 0.442020 | 3_1:+83803473 | Msa0381580:CDS |
| CAAGAATTGGGCACGTGTCC+CGG | 0.442821 | 3_1:+83804882 | Msa0381580:CDS |
| GTCAGTTATGTTGAGAATGC+TGG | 0.450633 | 3_1:+83804337 | Msa0381580:CDS |
| GAGTGCGTTCATAACTGAAA+TGG | 0.452304 | 3_1:-83801542 | None:intergenic |
| TCTCACCCCTTCCTTCATCA+TGG | 0.453039 | 3_1:+83804912 | Msa0381580:CDS |
| CAACACACCAACTTTATCTT+GGG | 0.457672 | 3_1:-83802095 | None:intergenic |
| AAGAAATTGACATGGAGTAC+AGG | 0.459008 | 3_1:+83804836 | Msa0381580:CDS |
| TATGGTTTCAACCACTGTAC+AGG | 0.463537 | 3_1:-83804628 | None:intergenic |
| TCTCTTCAAATATCTATGTT+GGG | 0.463786 | 3_1:+83803474 | Msa0381580:CDS |
| TGAATTGCTTCTTCAGTGAA+TGG | 0.469168 | 3_1:-83803512 | None:intergenic |
| GGGAAGATGCTTATTTGTCT+AGG | 0.470752 | 3_1:+83803934 | Msa0381580:intron |
| GCAGGCACTTGCACTTAAAA+GGG | 0.472005 | 3_1:+83803433 | Msa0381580:intron |
| AAGGGGTGAGACCAAGAGCC+GGG | 0.475278 | 3_1:-83804900 | None:intergenic |
| TGAGAACTTGAATGTTAGCT+TGG | 0.480049 | 3_1:+83805276 | Msa0381580:three_prime_UTR |
| TATTGATATAGGATATCATT+CGG | 0.487615 | 3_1:+83802894 | Msa0381580:intron |
| ATTCTTGTATTGGTCGAGCC+AGG | 0.487791 | 3_1:-83801980 | None:intergenic |
| AGAGTTGGTCGGCGTGGGTG+AGG | 0.491302 | 3_1:-83801504 | None:intergenic |
| TATCTTCAGAGGTGCTGGTA+GGG | 0.493651 | 3_1:-83804987 | None:intergenic |
| GGATCCATACCGAGATCAAA+TGG | 0.499443 | 3_1:+83804360 | Msa0381580:CDS |
| CTGCAGCGATGAAGGGATTG+AGG | 0.499797 | 3_1:-83801595 | None:intergenic |
| TTGTAACAAGTCTACATCTC+AGG | 0.507679 | 3_1:+83801940 | Msa0381580:CDS |
| GAAGGGGTGAGACCAAGAGC+CGG | 0.510828 | 3_1:-83804901 | None:intergenic |
| CTTTCTGGCCAAGCTCAACT+AGG | 0.513801 | 3_1:-83804663 | None:intergenic |
| GAAGCATATGCTTCTATTGG+AGG | 0.515453 | 3_1:+83802992 | Msa0381580:CDS |
| GCATTTATTGCTGCTGCCGA+TGG | 0.517268 | 3_1:-83804964 | None:intergenic |
| TCCTCCATTTGATCTCGGTA+TGG | 0.518447 | 3_1:-83804364 | None:intergenic |
| TAAAAGGGCTTTGGAAGCAA+AGG | 0.519261 | 3_1:+83803448 | Msa0381580:CDS |
| TTGGTCGGCGTGGGTGAGGA+AGG | 0.519954 | 3_1:-83801500 | None:intergenic |
| GGAGAAACCGAAACAATCTT+GGG | 0.521215 | 3_1:-83802919 | None:intergenic |
| TACCCGTGTTACTTGCTACT+CGG | 0.521616 | 3_1:+83801916 | Msa0381580:CDS |
| CAAAACTGATATCTACGCTC+CGG | 0.521810 | 3_1:+83802954 | Msa0381580:CDS |
| ATCTTCAGAGGTGCTGGTAG+GGG | 0.525267 | 3_1:-83804986 | None:intergenic |
| AGGGATTGAGGGTATCGGTT+GGG | 0.525449 | 3_1:-83801583 | None:intergenic |
| CGTATGTATTATATCTGTAA+AGG | 0.526845 | 3_1:-83805209 | None:intergenic |
| ATAGAAAACTGGGGATAAAG+AGG | 0.527953 | 3_1:-83803754 | None:intergenic |
| TTGGAAAGAGTTGGTCGGCG+TGG | 0.532518 | 3_1:-83801510 | None:intergenic |
| TCAGTTATGTTGAGAATGCT+GGG | 0.533403 | 3_1:+83804338 | Msa0381580:CDS |
| GTTATTAAAAGGAAAATGGT+TGG | 0.536432 | 3_1:-83801464 | None:intergenic |
| AAAAGGGCTTTGGAAGCAAA+GGG | 0.536438 | 3_1:+83803449 | Msa0381580:CDS |
| GTCTTTATCCATATCTTCAG+AGG | 0.540172 | 3_1:-83804998 | None:intergenic |
| GTTGTATAGATTAGTACAAG+TGG | 0.541939 | 3_1:-83805333 | None:intergenic |
| AAAACTGATATCTACGCTCC+GGG | 0.542299 | 3_1:+83802955 | Msa0381580:CDS |
| GGTGTGTTGCTTCTCAACCT+AGG | 0.543801 | 3_1:+83802109 | Msa0381580:CDS |
| AGTAAGCTGCTCATTATAAG+TGG | 0.545992 | 3_1:-83802050 | None:intergenic |
| CTAGTTGAGCTTGGCCAGAA+AGG | 0.546122 | 3_1:+83804664 | Msa0381580:CDS |
| TGCAGCGATGAAGGGATTGA+GGG | 0.547203 | 3_1:-83801594 | None:intergenic |
| GAATTGCTTCTTCAGTGAAT+GGG | 0.548173 | 3_1:-83803511 | None:intergenic |
| ACTGAAATGGACGACGACGT+TGG | 0.551465 | 3_1:-83801529 | None:intergenic |
| GCAAGATCCATGATGAAGGA+AGG | 0.554278 | 3_1:-83804919 | None:intergenic |
| TGGAAAGAGTTGGTCGGCGT+GGG | 0.554554 | 3_1:-83801509 | None:intergenic |
| AACTCTTGGTATCAAAGAGA+AGG | 0.555055 | 3_1:+83803975 | Msa0381580:CDS |
| TGCACTCCTCCATTTGATCT+CGG | 0.555763 | 3_1:-83804369 | None:intergenic |
| TGAAAATCTGCAGCGATGAA+GGG | 0.555815 | 3_1:-83801602 | None:intergenic |
| AGTAGTGGATATAGAAAACT+GGG | 0.558376 | 3_1:-83803764 | None:intergenic |
| GTGTGATAGATTAAGAAGGA+TGG | 0.561861 | 3_1:+83803709 | Msa0381580:intron |
| ATCTGCAAGATCCATGATGA+AGG | 0.564670 | 3_1:-83804923 | None:intergenic |
| TTATCTTGGGCAGCGTGAGT+AGG | 0.565197 | 3_1:-83802082 | None:intergenic |
| CAAGATCCATGATGAAGGAA+GGG | 0.567383 | 3_1:-83804918 | None:intergenic |
| AAGGGATTGAGGGTATCGGT+TGG | 0.567491 | 3_1:-83801584 | None:intergenic |
| GATGAAGTCCTAGTTGAGCT+TGG | 0.570100 | 3_1:+83804655 | Msa0381580:CDS |
| CAAATATCTATGTTGGGATG+CGG | 0.570330 | 3_1:+83803480 | Msa0381580:CDS |
| CTTCCTTGGATTTAGGAGCC+CGG | 0.570429 | 3_1:-83802973 | None:intergenic |
| GCGAAAAGATTAAAGAGGAA+AGG | 0.572094 | 3_1:-83802160 | None:intergenic |
| GCATATGCTTCTATTGGAGG+TGG | 0.572738 | 3_1:+83802995 | Msa0381580:CDS |
| CCTAGGTGGACCAGAGACGC+TGG | 0.572902 | 3_1:+83802126 | Msa0381580:CDS |
| CTAATGATAGTGTACCTCAC+TGG | 0.572939 | 3_1:-83804709 | None:intergenic |
| CCAGCGTCTCTGGTCCACCT+AGG | 0.573383 | 3_1:-83802126 | None:intergenic |
| CACGCTGCCCAAGATAAAGT+TGG | 0.577159 | 3_1:+83802088 | Msa0381580:CDS |
| AGAAATTGACATGGAGTACA+GGG | 0.578767 | 3_1:+83804837 | Msa0381580:CDS |
| CATCATGGATCTTGCAGATG+CGG | 0.579000 | 3_1:+83804927 | Msa0381580:CDS |
| GTGCATCTTCTTGATCATGC+AGG | 0.580701 | 3_1:+83804387 | Msa0381580:CDS |
| ATATCTTCAGAGGTGCTGGT+AGG | 0.580852 | 3_1:-83804988 | None:intergenic |
| TCTGTAAAGGAGTAAAACCC+AGG | 0.588104 | 3_1:-83805196 | None:intergenic |
| AAGATCCATGATGAAGGAAG+GGG | 0.588954 | 3_1:-83804917 | None:intergenic |
| GCATTCTCAACATAACTGAC+AGG | 0.591932 | 3_1:-83804334 | None:intergenic |
| TCTTGTGTGATAGATTAAGA+AGG | 0.597670 | 3_1:+83803705 | Msa0381580:intron |
| ATGCAGGAATTGAAAGCTAG+AGG | 0.599634 | 3_1:+83804403 | Msa0381580:CDS |
| CAACATAGATATTTGAAGAG+AGG | 0.602336 | 3_1:-83803472 | None:intergenic |
| GACTCTTGAAGAAATTGACA+TGG | 0.603916 | 3_1:+83804828 | Msa0381580:CDS |
| ACTGATGCTTGACCCAGTAG+TGG | 0.613715 | 3_1:-83803779 | None:intergenic |
| GTCGAGTGGGCCCTGTACAG+TGG | 0.613972 | 3_1:+83804617 | Msa0381580:CDS |
| GCTCCGGGCTCCTAAATCCA+AGG | 0.618946 | 3_1:+83802970 | Msa0381580:CDS |
| ACGCAAAATTACAGATGACC+AGG | 0.621225 | 3_1:+83803027 | Msa0381580:CDS |
| ATGGATTGCCAGAGTCGAGT+GGG | 0.621399 | 3_1:+83804604 | Msa0381580:intron |
| ATGGTTTCAACCACTGTACA+GGG | 0.624392 | 3_1:-83804627 | None:intergenic |
| ACGACGACGTTGGAAAGAGT+TGG | 0.631143 | 3_1:-83801519 | None:intergenic |
| GATCTGCGAAAAGATTAAAG+AGG | 0.632933 | 3_1:-83802165 | None:intergenic |
| CATAACTGACAGGAACACCA+TGG | 0.639549 | 3_1:-83804324 | None:intergenic |
| GATGGATTGCCAGAGTCGAG+TGG | 0.639812 | 3_1:+83804603 | Msa0381580:intron |
| GATGAAGGGATTGAGGGTAT+CGG | 0.640808 | 3_1:-83801588 | None:intergenic |
| GTTGGCGTGTACGTCAAAGA+TGG | 0.646233 | 3_1:-83801446 | None:intergenic |
| TCTTGGCGAAGTATTTAACT+GGG | 0.647791 | 3_1:-83805020 | None:intergenic |
| ATAACTGACAGGAACACCAT+GGG | 0.647820 | 3_1:-83804323 | None:intergenic |
| GTGTTGCTTCTCAACCTAGG+TGG | 0.663732 | 3_1:+83802112 | Msa0381580:CDS |
| TCTATGAAATCAAATTCAGG+TGG | 0.664584 | 3_1:-83805130 | None:intergenic |
| GGTGATAGAAGCTCTACCAT+CGG | 0.665588 | 3_1:+83804948 | Msa0381580:CDS |
| GGATGGAATAACAAGGCTCG+TGG | 0.666352 | 3_1:+83803726 | Msa0381580:CDS |
| CGACGTTGGAAAGAGTTGGT+CGG | 0.676199 | 3_1:-83801515 | None:intergenic |
| ATCCGAGTAGCAAGTAACAC+GGG | 0.692447 | 3_1:-83801918 | None:intergenic |
| AATCCGAGTAGCAAGTAACA+CGG | 0.705787 | 3_1:-83801919 | None:intergenic |
| TTAAGAAGGATGGAATAACA+AGG | 0.706239 | 3_1:+83803719 | Msa0381580:CDS |
| CAGTTATGTTGAGAATGCTG+GGG | 0.717752 | 3_1:+83804339 | Msa0381580:CDS |
| TCCATACCGAGATCAAATGG+AGG | 0.721527 | 3_1:+83804363 | Msa0381580:CDS |
| GTAGTGGATATAGAAAACTG+GGG | 0.817706 | 3_1:-83803763 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTACATATATTAGAA+TGG | - | chr3_1:83801856-83801875 | None:intergenic | 10.0% |
| !! | TCTAATATATGTAAAATAAT+TGG | + | chr3_1:83801857-83801876 | Msa0381580:intron | 10.0% |
| !!! | ATTTATTGTATTTTATTGAT+TGG | + | chr3_1:83802720-83802739 | Msa0381580:intron | 10.0% |
| !!! | CTGATAATTATTTTTAAAAA+TGG | - | chr3_1:83803220-83803239 | None:intergenic | 10.0% |
| !!! | TTTATTTTATAGAAAATAAC+AGG | - | chr3_1:83803345-83803364 | None:intergenic | 10.0% |
| !! | AAAAATAGAAAGAAAAAAAT+TGG | - | chr3_1:83804281-83804300 | None:intergenic | 10.0% |
| !! | AGAAAAGTAAAAATGAAATA+GGG | - | chr3_1:83801697-83801716 | None:intergenic | 15.0% |
| !! | AAGAAAAGTAAAAATGAAAT+AGG | - | chr3_1:83801698-83801717 | None:intergenic | 15.0% |
| !! | ACATTTGATATAAAATGTAT+AGG | - | chr3_1:83803548-83803567 | None:intergenic | 15.0% |
| !! | GTATCAATAACTTAAATAAA+TGG | - | chr3_1:83803606-83803625 | None:intergenic | 15.0% |
| !!! | TTTATTTAAGTTATTGATAC+AGG | + | chr3_1:83803606-83803625 | Msa0381580:intron | 15.0% |
| !!! | ACTGATATTATTTAATTTTC+AGG | + | chr3_1:83803913-83803932 | Msa0381580:intron | 15.0% |
| !!! | CTGATATTATTTAATTTTCA+GGG | + | chr3_1:83803914-83803933 | Msa0381580:intron | 15.0% |
| !!! | TTTTTTTCTTTCTATTTTTC+AGG | + | chr3_1:83804282-83804301 | Msa0381580:intron | 15.0% |
| !!! | TGGTATTGACTTTTTTATTT+TGG | + | chr3_1:83801414-83801433 | Msa0381580:five_prime_UTR | 20.0% |
| !! | AGATGTTATTAAAAGGAAAA+TGG | - | chr3_1:83801471-83801490 | None:intergenic | 20.0% |
| !!! | TATGTAAAATAATTGGTTTC+AGG | + | chr3_1:83801864-83801883 | Msa0381580:intron | 20.0% |
| !!! | TCATTTTTATGCTAATTGTT+TGG | + | chr3_1:83802242-83802261 | Msa0381580:intron | 20.0% |
| !!! | TGTTTACTTAAATTGTTTTC+CGG | - | chr3_1:83802478-83802497 | None:intergenic | 20.0% |
| !!! | ATATTGTATAATGGAATACA+TGG | + | chr3_1:83802557-83802576 | Msa0381580:intron | 20.0% |
| !! | TATTGATATAGGATATCATT+CGG | + | chr3_1:83802894-83802913 | Msa0381580:intron | 20.0% |
| !!! | AATGGAAATAACATCTTTTA+TGG | + | chr3_1:83803396-83803415 | Msa0381580:intron | 20.0% |
| !!! | ATGGAAATAACATCTTTTAT+GGG | + | chr3_1:83803397-83803416 | Msa0381580:intron | 20.0% |
| !! | TAACAATAAACCCAAATTTA+AGG | - | chr3_1:83803677-83803696 | None:intergenic | 20.0% |
| !!! | TATACTTCATTTTTTTTCCT+GGG | + | chr3_1:83805179-83805198 | Msa0381580:three_prime_UTR | 20.0% |
| ! | GTTATTAAAAGGAAAATGGT+TGG | - | chr3_1:83801467-83801486 | None:intergenic | 25.0% |
| ! | AGTAAAAATGAAATAGGGTT+TGG | - | chr3_1:83801692-83801711 | None:intergenic | 25.0% |
| ! | TGAGATTTATTGAGAGAATT+TGG | - | chr3_1:83801725-83801744 | None:intergenic | 25.0% |
| ! | AATTCTCTCAATAAATCTCA+TGG | + | chr3_1:83801725-83801744 | Msa0381580:intron | 25.0% |
| ! | TGCAAAAAAAAGTAACATAC+AGG | - | chr3_1:83802190-83802209 | None:intergenic | 25.0% |
| !! | GTTTACTTAAATTGTTTTCC+GGG | - | chr3_1:83802477-83802496 | None:intergenic | 25.0% |
| !! | TAAATGTCAATCATGAGTTT+TGG | + | chr3_1:83802530-83802549 | Msa0381580:intron | 25.0% |
| !! | TTTGGTAGCATATTGTATAA+TGG | + | chr3_1:83802548-83802567 | Msa0381580:intron | 25.0% |
| !!! | TTGTATTTTATTGATTGGTG+TGG | + | chr3_1:83802725-83802744 | Msa0381580:intron | 25.0% |
| !!! | TGTATTTTATTGATTGGTGT+GGG | + | chr3_1:83802726-83802745 | Msa0381580:intron | 25.0% |
| ! | TCTGTTTATGTTTGATGTAA+TGG | + | chr3_1:83802749-83802768 | Msa0381580:intron | 25.0% |
| !! | TATGTCTCTTGTATTGATAT+AGG | + | chr3_1:83802883-83802902 | Msa0381580:intron | 25.0% |
| ! | GGGGAAAATAAAAATAAGAA+AGG | - | chr3_1:83803078-83803097 | None:intergenic | 25.0% |
| ! | TTGAATGTAATCATGTATGT+CGG | - | chr3_1:83803191-83803210 | None:intergenic | 25.0% |
| ! | TCTCTTCAAATATCTATGTT+GGG | + | chr3_1:83803474-83803493 | Msa0381580:CDS | 25.0% |
| !! | CATTTTGTCACCTTAAATTT+GGG | + | chr3_1:83803664-83803683 | Msa0381580:intron | 25.0% |
| ! | AAATTCTCTAAATCATGCAA+GGG | - | chr3_1:83803852-83803871 | None:intergenic | 25.0% |
| ! | AAAATTCTCTAAATCATGCA+AGG | - | chr3_1:83803853-83803872 | None:intergenic | 25.0% |
| ! | TTGATACCAAGAGTTTATAA+TGG | - | chr3_1:83803970-83803989 | None:intergenic | 25.0% |
| ! | ATCAAAGAGAAGGTTATATT+AGG | + | chr3_1:83803985-83804004 | Msa0381580:CDS | 25.0% |
| ! | AGGTTCAGAAAAAAAATCAT+AGG | - | chr3_1:83804192-83804211 | None:intergenic | 25.0% |
| ! | TTTGTATTCTTGCTTTCTTT+GGG | + | chr3_1:83804548-83804567 | Msa0381580:intron | 25.0% |
| ! | CAATAAAAATGTCAGATACA+GGG | - | chr3_1:83804583-83804602 | None:intergenic | 25.0% |
| !! | TATCTGACATTTTTATTGGA+TGG | + | chr3_1:83804585-83804604 | Msa0381580:intron | 25.0% |
| ! | AATTGAACCAAAAAACATCT+TGG | - | chr3_1:83805040-83805059 | None:intergenic | 25.0% |
| !!! | GATGTTTTTTGGTTCAATTT+TGG | + | chr3_1:83805041-83805060 | Msa0381580:CDS | 25.0% |
| ! | ACATCTATGAAATCAAATTC+AGG | - | chr3_1:83805136-83805155 | None:intergenic | 25.0% |
| !!! | GTATACTTCATTTTTTTTCC+TGG | + | chr3_1:83805178-83805197 | Msa0381580:three_prime_UTR | 25.0% |
| ! | CGTATGTATTATATCTGTAA+AGG | - | chr3_1:83805212-83805231 | None:intergenic | 25.0% |
| GGAAGGAAGATGTTATTAAA+AGG | - | chr3_1:83801478-83801497 | None:intergenic | 30.0% | |
| TAGGGTTTGGAAATAATTGA+AGG | - | chr3_1:83801679-83801698 | None:intergenic | 30.0% | |
| GAATGGTCAATTGAAAAGAA+GGG | - | chr3_1:83801839-83801858 | None:intergenic | 30.0% | |
| AGAATGGTCAATTGAAAAGA+AGG | - | chr3_1:83801840-83801859 | None:intergenic | 30.0% | |
| TTTATGCTAATTGTTTGGAG+CGG | + | chr3_1:83802247-83802266 | Msa0381580:intron | 30.0% | |
| GTGATCAAATCTCAATAGAT+AGG | - | chr3_1:83802323-83802342 | None:intergenic | 30.0% | |
| GGACTTAATGACTCTAATAT+TGG | + | chr3_1:83802444-83802463 | Msa0381580:intron | 30.0% | |
| GTCATGTGATTTCAATTTCT+TGG | + | chr3_1:83802613-83802632 | Msa0381580:intron | 30.0% | |
| ATGTGATTTCAATTTCTTGG+TGG | + | chr3_1:83802616-83802635 | Msa0381580:intron | 30.0% | |
| TGTGATTTCAATTTCTTGGT+GGG | + | chr3_1:83802617-83802636 | Msa0381580:intron | 30.0% | |
| AACTGTTGTATATTGATCAC+TGG | + | chr3_1:83802776-83802795 | Msa0381580:intron | 30.0% | |
| ACTGTTGTATATTGATCACT+GGG | + | chr3_1:83802777-83802796 | Msa0381580:intron | 30.0% | |
| ! | GTAGATATCAGTTTTGCTAA+TGG | - | chr3_1:83802950-83802969 | None:intergenic | 30.0% |
| ! | TCATCTGTAATTTTGCGTAA+AGG | - | chr3_1:83803025-83803044 | None:intergenic | 30.0% |
| ! | TTTTCCCCTTATATGTTGTT+TGG | + | chr3_1:83803090-83803109 | Msa0381580:intron | 30.0% |
| ATAGCCAAACAACATATAAG+GGG | - | chr3_1:83803097-83803116 | None:intergenic | 30.0% | |
| CATAGCCAAACAACATATAA+GGG | - | chr3_1:83803098-83803117 | None:intergenic | 30.0% | |
| ACATAGCCAAACAACATATA+AGG | - | chr3_1:83803099-83803118 | None:intergenic | 30.0% | |
| AACAGTGTTACAGTTTAGAA+TGG | + | chr3_1:83803378-83803397 | Msa0381580:intron | 30.0% | |
| CAACATAGATATTTGAAGAG+AGG | - | chr3_1:83803475-83803494 | None:intergenic | 30.0% | |
| CTCTCTTCAAATATCTATGT+TGG | + | chr3_1:83803473-83803492 | Msa0381580:CDS | 30.0% | |
| ! | CCAAATTTAAGGTGACAAAA+TGG | - | chr3_1:83803666-83803685 | None:intergenic | 30.0% |
| ! | CCATTTTGTCACCTTAAATT+TGG | + | chr3_1:83803663-83803682 | Msa0381580:intron | 30.0% |
| TCTTGTGTGATAGATTAAGA+AGG | + | chr3_1:83803705-83803724 | Msa0381580:intron | 30.0% | |
| TTAAGAAGGATGGAATAACA+AGG | + | chr3_1:83803719-83803738 | Msa0381580:CDS | 30.0% | |
| !! | AGTAGTGGATATAGAAAACT+GGG | - | chr3_1:83803767-83803786 | None:intergenic | 30.0% |
| ! | AGTTTTCTATATCCACTACT+GGG | + | chr3_1:83803767-83803786 | Msa0381580:CDS | 30.0% |
| ! | CAAGAGTTTATAATGGAAAC+AGG | - | chr3_1:83803963-83803982 | None:intergenic | 30.0% |
| CTGTTTCCATTATAAACTCT+TGG | + | chr3_1:83803961-83803980 | Msa0381580:CDS | 30.0% | |
| AGAAGGTTATATTAGGTCAA+TGG | + | chr3_1:83803992-83804011 | Msa0381580:intron | 30.0% | |
| AATACGCTTTCCTTAAAACT+CGG | + | chr3_1:83804083-83804102 | Msa0381580:intron | 30.0% | |
| !!! | TTTTTTCTGAACCTGTTAGT+AGG | + | chr3_1:83804198-83804217 | Msa0381580:intron | 30.0% |
| ! | TTTTTCTGAACCTGTTAGTA+GGG | + | chr3_1:83804199-83804218 | Msa0381580:intron | 30.0% |
| AGAAAAAAATTGGTATGCCA+CGG | - | chr3_1:83804271-83804290 | None:intergenic | 30.0% | |
| !!! | ATGATATTTTTTAGTGCCCA+TGG | + | chr3_1:83804307-83804326 | Msa0381580:intron | 30.0% |
| TGTACTGTTCAATTAATAGC+TGG | + | chr3_1:83804525-83804544 | Msa0381580:intron | 30.0% | |
| GTTTGTATTCTTGCTTTCTT+TGG | + | chr3_1:83804547-83804566 | Msa0381580:intron | 30.0% | |
| CCAATAAAAATGTCAGATAC+AGG | - | chr3_1:83804584-83804603 | None:intergenic | 30.0% | |
| ! | CCTGTATCTGACATTTTTAT+TGG | + | chr3_1:83804581-83804600 | Msa0381580:intron | 30.0% |
| CAATAAGCTATCGTAGTAAA+AGG | - | chr3_1:83804735-83804754 | None:intergenic | 30.0% | |
| ! | CTTTTACTACGATAGCTTAT+TGG | + | chr3_1:83804733-83804752 | Msa0381580:intron | 30.0% |
| TCTATGAAATCAAATTCAGG+TGG | - | chr3_1:83805133-83805152 | None:intergenic | 30.0% | |
| GTTGTATAGATTAGTACAAG+TGG | - | chr3_1:83805336-83805355 | None:intergenic | 30.0% | |
| GAACATATTCGTTCGTGATT+TGG | + | chr3_1:83801394-83801413 | Msa0381580:five_prime_UTR | 35.0% | |
| ! | CGTAAAAGTGTAGTAGAGTT+GGG | - | chr3_1:83801638-83801657 | None:intergenic | 35.0% |
| ! | TCGTAAAAGTGTAGTAGAGT+TGG | - | chr3_1:83801639-83801658 | None:intergenic | 35.0% |
| TTGTAACAAGTCTACATCTC+AGG | + | chr3_1:83801940-83801959 | Msa0381580:CDS | 35.0% | |
| AGTAAGCTGCTCATTATAAG+TGG | - | chr3_1:83802053-83802072 | None:intergenic | 35.0% | |
| CAACACACCAACTTTATCTT+GGG | - | chr3_1:83802098-83802117 | None:intergenic | 35.0% | |
| GCGAAAAGATTAAAGAGGAA+AGG | - | chr3_1:83802163-83802182 | None:intergenic | 35.0% | |
| GATCTGCGAAAAGATTAAAG+AGG | - | chr3_1:83802168-83802187 | None:intergenic | 35.0% | |
| TAGATAGGCTCCTACTAATT+AGG | - | chr3_1:83802308-83802327 | None:intergenic | 35.0% | |
| !! | CATCTGGATTCTTAGTTTGT+TGG | + | chr3_1:83802365-83802384 | Msa0381580:intron | 35.0% |
| !! | TCTAATATTGGCTTAGATCC+CGG | + | chr3_1:83802456-83802475 | Msa0381580:intron | 35.0% |
| ! | AATAGAAGCATATGCTTCCT+TGG | - | chr3_1:83802990-83803009 | None:intergenic | 35.0% |
| ! | AAGGAAGCATATGCTTCTAT+TGG | + | chr3_1:83802989-83803008 | Msa0381580:CDS | 35.0% |
| CAAAAAAATTGAACTGCACC+TGG | - | chr3_1:83803048-83803067 | None:intergenic | 35.0% | |
| TTACGTGTTAGTGTCATATC+TGG | + | chr3_1:83803243-83803262 | Msa0381580:intron | 35.0% | |
| CTCTTCAAGAGAATACTTTG+TGG | + | chr3_1:83803312-83803331 | Msa0381580:intron | 35.0% | |
| CAAATATCTATGTTGGGATG+CGG | + | chr3_1:83803480-83803499 | Msa0381580:CDS | 35.0% | |
| GAATTGCTTCTTCAGTGAAT+GGG | - | chr3_1:83803514-83803533 | None:intergenic | 35.0% | |
| TGAATTGCTTCTTCAGTGAA+TGG | - | chr3_1:83803515-83803534 | None:intergenic | 35.0% | |
| GTGTGATAGATTAAGAAGGA+TGG | + | chr3_1:83803709-83803728 | Msa0381580:intron | 35.0% | |
| ATAGAAAACTGGGGATAAAG+AGG | - | chr3_1:83803757-83803776 | None:intergenic | 35.0% | |
| !! | GTAGTGGATATAGAAAACTG+GGG | - | chr3_1:83803766-83803785 | None:intergenic | 35.0% |
| !! | CAGTAGTGGATATAGAAAAC+TGG | - | chr3_1:83803768-83803787 | None:intergenic | 35.0% |
| ! | CAGTTTTCTATATCCACTAC+TGG | + | chr3_1:83803766-83803785 | Msa0381580:CDS | 35.0% |
| AACTCTTGGTATCAAAGAGA+AGG | + | chr3_1:83803975-83803994 | Msa0381580:CDS | 35.0% | |
| TTTCCTTAAAACTCGGTATC+CGG | + | chr3_1:83804090-83804109 | Msa0381580:intron | 35.0% | |
| ATTCAATACAAGTGGATGGT+GGG | - | chr3_1:83804147-83804166 | None:intergenic | 35.0% | |
| TATTCAATACAAGTGGATGG+TGG | - | chr3_1:83804148-83804167 | None:intergenic | 35.0% | |
| ACGTATTCAATACAAGTGGA+TGG | - | chr3_1:83804151-83804170 | None:intergenic | 35.0% | |
| TCCACTTGTATTGAATACGT+TGG | + | chr3_1:83804151-83804170 | Msa0381580:intron | 35.0% | |
| TCCAACGTATTCAATACAAG+TGG | - | chr3_1:83804155-83804174 | None:intergenic | 35.0% | |
| TGTATTGAATACGTTGGACA+TGG | + | chr3_1:83804157-83804176 | Msa0381580:intron | 35.0% | |
| ! | ATTTTGTAAGCCCTACTAAC+AGG | - | chr3_1:83804212-83804231 | None:intergenic | 35.0% |
| GTAGGGCTTACAAAATTCAA+AGG | + | chr3_1:83804216-83804235 | Msa0381580:intron | 35.0% | |
| TCAGTTATGTTGAGAATGCT+GGG | + | chr3_1:83804338-83804357 | Msa0381580:CDS | 35.0% | |
| ACTAGGACTTCATCTGTATA+TGG | - | chr3_1:83804649-83804668 | None:intergenic | 35.0% | |
| GACTCTTGAAGAAATTGACA+TGG | + | chr3_1:83804828-83804847 | Msa0381580:CDS | 35.0% | |
| AAGAAATTGACATGGAGTAC+AGG | + | chr3_1:83804836-83804855 | Msa0381580:CDS | 35.0% | |
| AGAAATTGACATGGAGTACA+GGG | + | chr3_1:83804837-83804856 | Msa0381580:CDS | 35.0% | |
| TTGAATCTGGCATCAAGAAT+TGG | + | chr3_1:83804869-83804888 | Msa0381580:CDS | 35.0% | |
| TGAATCTGGCATCAAGAATT+GGG | + | chr3_1:83804870-83804889 | Msa0381580:CDS | 35.0% | |
| GTCTTTATCCATATCTTCAG+AGG | - | chr3_1:83805001-83805020 | None:intergenic | 35.0% | |
| ! | TCTTGGCGAAGTATTTAACT+GGG | - | chr3_1:83805023-83805042 | None:intergenic | 35.0% |
| ! | ATCTTGGCGAAGTATTTAAC+TGG | - | chr3_1:83805024-83805043 | None:intergenic | 35.0% |
| !!! | TACTTCGCCAAGATGTTTTT+TGG | + | chr3_1:83805030-83805049 | Msa0381580:CDS | 35.0% |
| ! | CTGAACGCAGTTATCATTTT+GGG | - | chr3_1:83805087-83805106 | None:intergenic | 35.0% |
| TGAGAACTTGAATGTTAGCT+TGG | + | chr3_1:83805276-83805295 | Msa0381580:three_prime_UTR | 35.0% | |
| GTACAAGTGGTAAACTGTTT+GGG | - | chr3_1:83805323-83805342 | None:intergenic | 35.0% | |
| AGTACAAGTGGTAAACTGTT+TGG | - | chr3_1:83805324-83805343 | None:intergenic | 35.0% | |
| GAGTGCGTTCATAACTGAAA+TGG | - | chr3_1:83801545-83801564 | None:intergenic | 40.0% | |
| TGAAAATCTGCAGCGATGAA+GGG | - | chr3_1:83801605-83801624 | None:intergenic | 40.0% | |
| AATCCGAGTAGCAAGTAACA+CGG | - | chr3_1:83801922-83801941 | None:intergenic | 40.0% | |
| ! | TCTGGTGCCAATTCTTGTAT+TGG | - | chr3_1:83801993-83802012 | None:intergenic | 40.0% |
| TGAGCGAGAAACTAAGTTTC+TGG | - | chr3_1:83802011-83802030 | None:intergenic | 40.0% | |
| GCAACACACCAACTTTATCT+TGG | - | chr3_1:83802099-83802118 | None:intergenic | 40.0% | |
| AGGCTCCTACTAATTAGGAA+GGG | - | chr3_1:83802303-83802322 | None:intergenic | 40.0% | |
| TAGGCTCCTACTAATTAGGA+AGG | - | chr3_1:83802304-83802323 | None:intergenic | 40.0% | |
| TTGAGATTTGATCACTCAGC+TGG | + | chr3_1:83802328-83802347 | Msa0381580:intron | 40.0% | |
| TGTGCCTAGATTCCTAATTG+AGG | + | chr3_1:83802397-83802416 | Msa0381580:intron | 40.0% | |
| TGAGCCTCAATTAGGAATCT+AGG | - | chr3_1:83802404-83802423 | None:intergenic | 40.0% | |
| AGATTGTGTGAGCCTCAATT+AGG | - | chr3_1:83802412-83802431 | None:intergenic | 40.0% | |
| ACACAATCTTGTGTTTGTGC+TGG | + | chr3_1:83802423-83802442 | Msa0381580:intron | 40.0% | |
| !! | ACAAGAGTGCTGCCATAATT+TGG | + | chr3_1:83802495-83802514 | Msa0381580:intron | 40.0% |
| CTGCCATAATTTGGTAGGAT+GGG | + | chr3_1:83802504-83802523 | Msa0381580:intron | 40.0% | |
| TCACCCATCCTACCAAATTA+TGG | - | chr3_1:83802510-83802529 | None:intergenic | 40.0% | |
| ATGGAATACATGGTTGTGCT+AGG | + | chr3_1:83802567-83802586 | Msa0381580:intron | 40.0% | |
| ! | GTGGGTGCTGCAAATTATTT+GGG | + | chr3_1:83802635-83802654 | Msa0381580:intron | 40.0% |
| !!! | TTGTGACGTTTTGGAGAGAT+TGG | + | chr3_1:83802690-83802709 | Msa0381580:intron | 40.0% |
| !!! | TGTGACGTTTTGGAGAGATT+GGG | + | chr3_1:83802691-83802710 | Msa0381580:intron | 40.0% |
| GGAGAAACCGAAACAATCTT+GGG | - | chr3_1:83802922-83802941 | None:intergenic | 40.0% | |
| TGGAGAAACCGAAACAATCT+TGG | - | chr3_1:83802923-83802942 | None:intergenic | 40.0% | |
| ! | TCAGTTTTGCTAATGGTTGC+TGG | - | chr3_1:83802943-83802962 | None:intergenic | 40.0% |
| CAAAACTGATATCTACGCTC+CGG | + | chr3_1:83802954-83802973 | Msa0381580:CDS | 40.0% | |
| AAAACTGATATCTACGCTCC+GGG | + | chr3_1:83802955-83802974 | Msa0381580:CDS | 40.0% | |
| GCATATGCTTCCTTGGATTT+AGG | - | chr3_1:83802983-83803002 | None:intergenic | 40.0% | |
| GAAGCATATGCTTCTATTGG+AGG | + | chr3_1:83802992-83803011 | Msa0381580:CDS | 40.0% | |
| ACGCAAAATTACAGATGACC+AGG | + | chr3_1:83803027-83803046 | Msa0381580:CDS | 40.0% | |
| CTCTAGATTGAAGACATGTC+CGG | + | chr3_1:83803156-83803175 | Msa0381580:intron | 40.0% | |
| !! | TGTATGTCGGTGTCAAATAC+CGG | - | chr3_1:83803178-83803197 | None:intergenic | 40.0% |
| GTTAGTGTCATATCTGGTGT+AGG | + | chr3_1:83803249-83803268 | Msa0381580:intron | 40.0% | |
| ACTTGCACTTAAAAGGGCTT+TGG | + | chr3_1:83803439-83803458 | Msa0381580:CDS | 40.0% | |
| !! | TAAAAGGGCTTTGGAAGCAA+AGG | + | chr3_1:83803448-83803467 | Msa0381580:CDS | 40.0% |
| !! | AAAAGGGCTTTGGAAGCAAA+GGG | + | chr3_1:83803449-83803468 | Msa0381580:CDS | 40.0% |
| AACGTTCAGGTACTATGTAG+TGG | + | chr3_1:83803813-83803832 | Msa0381580:intron | 40.0% | |
| GGGAAGATGCTTATTTGTCT+AGG | + | chr3_1:83803934-83803953 | Msa0381580:intron | 40.0% | |
| AGAATAAAACTCACCTCCCT+TGG | - | chr3_1:83804056-83804075 | None:intergenic | 40.0% | |
| ! | TTTTACTCCAATCTGAACCG+TGG | + | chr3_1:83804251-83804270 | Msa0381580:intron | 40.0% |
| ATAACTGACAGGAACACCAT+GGG | - | chr3_1:83804326-83804345 | None:intergenic | 40.0% | |
| GCATTCTCAACATAACTGAC+AGG | - | chr3_1:83804337-83804356 | None:intergenic | 40.0% | |
| GTCAGTTATGTTGAGAATGC+TGG | + | chr3_1:83804337-83804356 | Msa0381580:CDS | 40.0% | |
| CAGTTATGTTGAGAATGCTG+GGG | + | chr3_1:83804339-83804358 | Msa0381580:CDS | 40.0% | |
| ATGCAGGAATTGAAAGCTAG+AGG | + | chr3_1:83804403-83804422 | Msa0381580:CDS | 40.0% | |
| CTCAAGCTCAAATCAGAAGA+TGG | - | chr3_1:83804493-83804512 | None:intergenic | 40.0% | |
| ATGGTTTCAACCACTGTACA+GGG | - | chr3_1:83804630-83804649 | None:intergenic | 40.0% | |
| TATGGTTTCAACCACTGTAC+AGG | - | chr3_1:83804631-83804650 | None:intergenic | 40.0% | |
| AAAGACTCTTCACACCTTTC+TGG | - | chr3_1:83804681-83804700 | None:intergenic | 40.0% | |
| ! | CTAATGATAGTGTACCTCAC+TGG | - | chr3_1:83804712-83804731 | None:intergenic | 40.0% |
| AAGATCCATGATGAAGGAAG+GGG | - | chr3_1:83804920-83804939 | None:intergenic | 40.0% | |
| CAAGATCCATGATGAAGGAA+GGG | - | chr3_1:83804921-83804940 | None:intergenic | 40.0% | |
| ATCTGCAAGATCCATGATGA+AGG | - | chr3_1:83804926-83804945 | None:intergenic | 40.0% | |
| ! | CCTGAACGCAGTTATCATTT+TGG | - | chr3_1:83805088-83805107 | None:intergenic | 40.0% |
| CCAAAATGATAACTGCGTTC+AGG | + | chr3_1:83805085-83805104 | Msa0381580:CDS | 40.0% | |
| TCTGTAAAGGAGTAAAACCC+AGG | - | chr3_1:83805199-83805218 | None:intergenic | 40.0% | |
| ! | GATGAAGGGATTGAGGGTAT+CGG | - | chr3_1:83801591-83801610 | None:intergenic | 45.0% |
| GTGAAAATCTGCAGCGATGA+AGG | - | chr3_1:83801606-83801625 | None:intergenic | 45.0% | |
| ! | GTTTGTTGAATTGCTGCTGC+TGG | - | chr3_1:83801817-83801836 | None:intergenic | 45.0% |
| !! | TACCCGTGTTACTTGCTACT+CGG | + | chr3_1:83801916-83801935 | Msa0381580:CDS | 45.0% |
| ATCCGAGTAGCAAGTAACAC+GGG | - | chr3_1:83801921-83801940 | None:intergenic | 45.0% | |
| !!! | GCATCCTTGTTTTTGTGTCC+TGG | + | chr3_1:83801962-83801981 | Msa0381580:CDS | 45.0% |
| ! | ATTCTTGTATTGGTCGAGCC+AGG | - | chr3_1:83801983-83802002 | None:intergenic | 45.0% |
| GGCTCGACCAATACAAGAAT+TGG | + | chr3_1:83801983-83802002 | Msa0381580:CDS | 45.0% | |
| ! | ATGCTAATTGTTTGGAGCGG+AGG | + | chr3_1:83802250-83802269 | Msa0381580:intron | 45.0% |
| CTACTAATTAGGAAGGGGGT+AGG | - | chr3_1:83802297-83802316 | None:intergenic | 45.0% | |
| CTACCCCCTTCCTAATTAGT+AGG | + | chr3_1:83802295-83802314 | Msa0381580:intron | 45.0% | |
| GCTCCTACTAATTAGGAAGG+GGG | - | chr3_1:83802301-83802320 | None:intergenic | 45.0% | |
| GGCTCCTACTAATTAGGAAG+GGG | - | chr3_1:83802302-83802321 | None:intergenic | 45.0% | |
| GGCTGTTCTGATATTGCATC+TGG | + | chr3_1:83802349-83802368 | Msa0381580:intron | 45.0% | |
| ! | GAGTGCTGCCATAATTTGGT+AGG | + | chr3_1:83802499-83802518 | Msa0381580:intron | 45.0% |
| GCTGCCATAATTTGGTAGGA+TGG | + | chr3_1:83802503-83802522 | Msa0381580:intron | 45.0% | |
| ! | GGTGGGTGCTGCAAATTATT+TGG | + | chr3_1:83802634-83802653 | Msa0381580:intron | 45.0% |
| ! | TGGGTTCTAACAGTAGAACC+TGG | + | chr3_1:83802654-83802673 | Msa0381580:intron | 45.0% |
| ! | GGGTTCTAACAGTAGAACCT+GGG | + | chr3_1:83802655-83802674 | Msa0381580:intron | 45.0% |
| ! | GGTTCTAACAGTAGAACCTG+GGG | + | chr3_1:83802656-83802675 | Msa0381580:intron | 45.0% |
| GTTCTAACAGTAGAACCTGG+GGG | + | chr3_1:83802657-83802676 | Msa0381580:intron | 45.0% | |
| ! | TGGGCATGTTTGTGACGTTT+TGG | + | chr3_1:83802681-83802700 | Msa0381580:intron | 45.0% |
| !!! | GTGACGTTTTGGAGAGATTG+GGG | + | chr3_1:83802692-83802711 | Msa0381580:intron | 45.0% |
| CCAAAGAGAAGATAGACCAC+TGG | - | chr3_1:83802814-83802833 | None:intergenic | 45.0% | |
| CCAGTGGTCTATCTTCTCTT+TGG | + | chr3_1:83802811-83802830 | Msa0381580:intron | 45.0% | |
| TTCGGCTCCCAAGATTGTTT+CGG | + | chr3_1:83802912-83802931 | Msa0381580:CDS | 45.0% | |
| GCATATGCTTCTATTGGAGG+TGG | + | chr3_1:83802995-83803014 | Msa0381580:CDS | 45.0% | |
| GTTGTTTGGCTATGTAGCAC+TGG | + | chr3_1:83803104-83803123 | Msa0381580:intron | 45.0% | |
| CTTGTTTGGCTATGTAGCAC+TGG | + | chr3_1:83803131-83803150 | Msa0381580:intron | 45.0% | |
| ! | ATGGGTTCTGATGATCATGC+AGG | + | chr3_1:83803415-83803434 | Msa0381580:intron | 45.0% |
| TGCAGGCACTTGCACTTAAA+AGG | + | chr3_1:83803432-83803451 | Msa0381580:intron | 45.0% | |
| GCAGGCACTTGCACTTAAAA+GGG | + | chr3_1:83803433-83803452 | Msa0381580:intron | 45.0% | |
| ! | TCGAGAGTTTTTCTGAGCCA+AGG | + | chr3_1:83804036-83804055 | Msa0381580:intron | 45.0% |
| ! | CGAGAGTTTTTCTGAGCCAA+GGG | + | chr3_1:83804037-83804056 | Msa0381580:intron | 45.0% |
| ! | CCTCGGAATAATCGGTTCTT+GGG | - | chr3_1:83804116-83804135 | None:intergenic | 45.0% |
| CCAAGAACCGATTATTCCGA+GGG | + | chr3_1:83804114-83804133 | Msa0381580:intron | 45.0% | |
| CAAGAACCGATTATTCCGAG+GGG | + | chr3_1:83804115-83804134 | Msa0381580:intron | 45.0% | |
| ATTGGACCCCTCGGAATAAT+CGG | - | chr3_1:83804124-83804143 | None:intergenic | 45.0% | |
| !! | ATACAAGTGGATGGTGGGAT+TGG | - | chr3_1:83804142-83804161 | None:intergenic | 45.0% |
| CATAACTGACAGGAACACCA+TGG | - | chr3_1:83804327-83804346 | None:intergenic | 45.0% | |
| GGATCCATACCGAGATCAAA+TGG | + | chr3_1:83804360-83804379 | Msa0381580:CDS | 45.0% | |
| TCCATACCGAGATCAAATGG+AGG | + | chr3_1:83804363-83804382 | Msa0381580:CDS | 45.0% | |
| TCCTCCATTTGATCTCGGTA+TGG | - | chr3_1:83804367-83804386 | None:intergenic | 45.0% | |
| TGCACTCCTCCATTTGATCT+CGG | - | chr3_1:83804372-83804391 | None:intergenic | 45.0% | |
| GTGCATCTTCTTGATCATGC+AGG | + | chr3_1:83804387-83804406 | Msa0381580:CDS | 45.0% | |
| TGAGCACACTCTTGCTTATC+AGG | + | chr3_1:83804435-83804454 | Msa0381580:CDS | 45.0% | |
| GATGAAGTCCTAGTTGAGCT+TGG | + | chr3_1:83804655-83804674 | Msa0381580:CDS | 45.0% | |
| !! | GTCTTTTAGCTGTTCCAGTG+AGG | + | chr3_1:83804695-83804714 | Msa0381580:CDS | 45.0% |
| TGACATGGAGTACAGGGAAT+TGG | + | chr3_1:83804843-83804862 | Msa0381580:CDS | 45.0% | |
| ! | AGGGAATTGGCTCTTGAATC+TGG | + | chr3_1:83804856-83804875 | Msa0381580:CDS | 45.0% |
| GCAAGATCCATGATGAAGGA+AGG | - | chr3_1:83804922-83804941 | None:intergenic | 45.0% | |
| CATCATGGATCTTGCAGATG+CGG | + | chr3_1:83804927-83804946 | Msa0381580:CDS | 45.0% | |
| GGTGATAGAAGCTCTACCAT+CGG | + | chr3_1:83804948-83804967 | Msa0381580:CDS | 45.0% | |
| !! | TATCTTCAGAGGTGCTGGTA+GGG | - | chr3_1:83804990-83805009 | None:intergenic | 45.0% |
| !! | ATATCTTCAGAGGTGCTGGT+AGG | - | chr3_1:83804991-83805010 | None:intergenic | 45.0% |
| ! | TACCAGCACCTCTGAAGATA+TGG | + | chr3_1:83804990-83805009 | Msa0381580:CDS | 45.0% |
| ! | ATCCATATCTTCAGAGGTGC+TGG | - | chr3_1:83804995-83805014 | None:intergenic | 45.0% |
| GTTGGCGTGTACGTCAAAGA+TGG | - | chr3_1:83801449-83801468 | None:intergenic | 50.0% | |
| ! | CGACGTTGGAAAGAGTTGGT+CGG | - | chr3_1:83801518-83801537 | None:intergenic | 50.0% |
| ACGACGACGTTGGAAAGAGT+TGG | - | chr3_1:83801522-83801541 | None:intergenic | 50.0% | |
| ACTGAAATGGACGACGACGT+TGG | - | chr3_1:83801532-83801551 | None:intergenic | 50.0% | |
| !! | AGGGATTGAGGGTATCGGTT+GGG | - | chr3_1:83801586-83801605 | None:intergenic | 50.0% |
| !! | AAGGGATTGAGGGTATCGGT+TGG | - | chr3_1:83801587-83801606 | None:intergenic | 50.0% |
| TGCAGCGATGAAGGGATTGA+GGG | - | chr3_1:83801597-83801616 | None:intergenic | 50.0% | |
| CGAGCCAGGACACAAAAACA+AGG | - | chr3_1:83801969-83801988 | None:intergenic | 50.0% | |
| TTATCTTGGGCAGCGTGAGT+AGG | - | chr3_1:83802085-83802104 | None:intergenic | 50.0% | |
| CACGCTGCCCAAGATAAAGT+TGG | + | chr3_1:83802088-83802107 | Msa0381580:CDS | 50.0% | |
| !! | GGTGTGTTGCTTCTCAACCT+AGG | + | chr3_1:83802109-83802128 | Msa0381580:CDS | 50.0% |
| !! | GTGTTGCTTCTCAACCTAGG+TGG | + | chr3_1:83802112-83802131 | Msa0381580:CDS | 50.0% |
| TAACAGTAGAACCTGGGGGT+TGG | + | chr3_1:83802661-83802680 | Msa0381580:intron | 50.0% | |
| AACAGTAGAACCTGGGGGTT+GGG | + | chr3_1:83802662-83802681 | Msa0381580:intron | 50.0% | |
| CTTCCTTGGATTTAGGAGCC+CGG | - | chr3_1:83802976-83802995 | None:intergenic | 50.0% | |
| !! | GTAGCACTGGCACTCTTGTT+TGG | + | chr3_1:83803117-83803136 | Msa0381580:intron | 50.0% |
| TCTATGTTGGGATGCGGTAC+TGG | + | chr3_1:83803486-83803505 | Msa0381580:CDS | 50.0% | |
| GGATGGAATAACAAGGCTCG+TGG | + | chr3_1:83803726-83803745 | Msa0381580:CDS | 50.0% | |
| ACTGATGCTTGACCCAGTAG+TGG | - | chr3_1:83803782-83803801 | None:intergenic | 50.0% | |
| TGGGTCAAGCATCAGTGTTC+TGG | + | chr3_1:83803786-83803805 | Msa0381580:CDS | 50.0% | |
| !! | GTGTTCTGGAGCAAACGTTC+AGG | + | chr3_1:83803800-83803819 | Msa0381580:CDS | 50.0% |
| ! | GAGTTTTTCTGAGCCAAGGG+AGG | + | chr3_1:83804040-83804059 | Msa0381580:intron | 50.0% |
| ! | GGAATAATCGGTTCTTGGGC+CGG | - | chr3_1:83804112-83804131 | None:intergenic | 50.0% |
| CCCAAGAACCGATTATTCCG+AGG | + | chr3_1:83804113-83804132 | Msa0381580:intron | 50.0% | |
| ! | CCCTCGGAATAATCGGTTCT+TGG | - | chr3_1:83804117-83804136 | None:intergenic | 50.0% |
| TGGTATGCCACGGTTCAGAT+TGG | - | chr3_1:83804261-83804280 | None:intergenic | 50.0% | |
| GATTTGAGCTTGAGCAGAGC+AGG | + | chr3_1:83804499-83804518 | Msa0381580:intron | 50.0% | |
| ! | ATGGATTGCCAGAGTCGAGT+GGG | + | chr3_1:83804604-83804623 | Msa0381580:intron | 50.0% |
| ! | CTTTCTGGCCAAGCTCAACT+AGG | - | chr3_1:83804666-83804685 | None:intergenic | 50.0% |
| CTAGTTGAGCTTGGCCAGAA+AGG | + | chr3_1:83804664-83804683 | Msa0381580:CDS | 50.0% | |
| TCTCACCCCTTCCTTCATCA+TGG | + | chr3_1:83804912-83804931 | Msa0381580:CDS | 50.0% | |
| GCATTTATTGCTGCTGCCGA+TGG | - | chr3_1:83804967-83804986 | None:intergenic | 50.0% | |
| !! | ATCTTCAGAGGTGCTGGTAG+GGG | - | chr3_1:83804989-83805008 | None:intergenic | 50.0% |
| ! | TGGAAAGAGTTGGTCGGCGT+GGG | - | chr3_1:83801512-83801531 | None:intergenic | 55.0% |
| ! | TTGGAAAGAGTTGGTCGGCG+TGG | - | chr3_1:83801513-83801532 | None:intergenic | 55.0% |
| CTGCAGCGATGAAGGGATTG+AGG | - | chr3_1:83801598-83801617 | None:intergenic | 55.0% | |
| TGAACATCGTCCAGCGTCTC+TGG | - | chr3_1:83802139-83802158 | None:intergenic | 55.0% | |
| CTGGGTACATCTTGTGCCAG+TGG | + | chr3_1:83802795-83802814 | Msa0381580:intron | 55.0% | |
| ! | GGGCCGGATACCGAGTTTTA+AGG | - | chr3_1:83804096-83804115 | None:intergenic | 55.0% |
| !! | GATGGATTGCCAGAGTCGAG+TGG | + | chr3_1:83804603-83804622 | Msa0381580:intron | 55.0% |
| CAAGAATTGGGCACGTGTCC+CGG | + | chr3_1:83804882-83804901 | Msa0381580:CDS | 55.0% | |
| CGTGGGTGAGGAAGGAAGGA+AGG | - | chr3_1:83801495-83801514 | None:intergenic | 60.0% | |
| CACAAACATGCCCAACCCCC+AGG | - | chr3_1:83802675-83802694 | None:intergenic | 60.0% | |
| GCTCCGGGCTCCTAAATCCA+AGG | + | chr3_1:83802970-83802989 | Msa0381580:CDS | 60.0% | |
| !! | GATGGTGGGATTGGACCCCT+CGG | - | chr3_1:83804133-83804152 | None:intergenic | 60.0% |
| AAGGGGTGAGACCAAGAGCC+GGG | - | chr3_1:83804903-83804922 | None:intergenic | 60.0% | |
| GAAGGGGTGAGACCAAGAGC+CGG | - | chr3_1:83804904-83804923 | None:intergenic | 60.0% | |
| TCGGCGTGGGTGAGGAAGGA+AGG | - | chr3_1:83801499-83801518 | None:intergenic | 65.0% | |
| TTGGTCGGCGTGGGTGAGGA+AGG | - | chr3_1:83801503-83801522 | None:intergenic | 65.0% | |
| ! | AGAGTTGGTCGGCGTGGGTG+AGG | - | chr3_1:83801507-83801526 | None:intergenic | 65.0% |
| CCAGCGTCTCTGGTCCACCT+AGG | - | chr3_1:83802129-83802148 | None:intergenic | 65.0% | |
| CCTAGGTGGACCAGAGACGC+TGG | + | chr3_1:83802126-83802145 | Msa0381580:CDS | 65.0% | |
| GTACAGGGCCCACTCGACTC+TGG | - | chr3_1:83804615-83804634 | None:intergenic | 65.0% | |
| GTCGAGTGGGCCCTGTACAG+TGG | + | chr3_1:83804617-83804636 | Msa0381580:CDS | 65.0% | |
| TGGGCACGTGTCCCGGCTCT+TGG | + | chr3_1:83804889-83804908 | Msa0381580:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 83801391 | 83805366 | 83801391 | ID=Msa0381580;Name=Msa0381580 |
| chr3_1 | mRNA | 83801391 | 83805366 | 83801391 | ID=Msa0381580-mRNA-1;Parent=Msa0381580;Name=Msa0381580-mRNA-1;_AED=0.12;_eAED=0.12;_QI=141|0.88|0.8|1|0.88|0.8|10|244|450 |
| chr3_1 | exon | 83801391 | 83801478 | 83801391 | ID=Msa0381580-mRNA-1:exon:21667;Parent=Msa0381580-mRNA-1 |
| chr3_1 | exon | 83801500 | 83801626 | 83801500 | ID=Msa0381580-mRNA-1:exon:21668;Parent=Msa0381580-mRNA-1 |
| chr3_1 | exon | 83801886 | 83802189 | 83801886 | ID=Msa0381580-mRNA-1:exon:21669;Parent=Msa0381580-mRNA-1 |
| chr3_1 | exon | 83802905 | 83803048 | 83802905 | ID=Msa0381580-mRNA-1:exon:21670;Parent=Msa0381580-mRNA-1 |
| chr3_1 | exon | 83803437 | 83803538 | 83803437 | ID=Msa0381580-mRNA-1:exon:21671;Parent=Msa0381580-mRNA-1 |
| chr3_1 | exon | 83803718 | 83803821 | 83803718 | ID=Msa0381580-mRNA-1:exon:21672;Parent=Msa0381580-mRNA-1 |
| chr3_1 | exon | 83803935 | 83804006 | 83803935 | ID=Msa0381580-mRNA-1:exon:21673;Parent=Msa0381580-mRNA-1 |
| chr3_1 | exon | 83804321 | 83804456 | 83804321 | ID=Msa0381580-mRNA-1:exon:21674;Parent=Msa0381580-mRNA-1 |
| chr3_1 | exon | 83804616 | 83804716 | 83804616 | ID=Msa0381580-mRNA-1:exon:21675;Parent=Msa0381580-mRNA-1 |
| chr3_1 | exon | 83804807 | 83805366 | 83804807 | ID=Msa0381580-mRNA-1:exon:21676;Parent=Msa0381580-mRNA-1 |
| chr3_1 | five_prime_UTR | 83801391 | 83801478 | 83801391 | ID=Msa0381580-mRNA-1:five_prime_utr;Parent=Msa0381580-mRNA-1 |
| chr3_1 | five_prime_UTR | 83801500 | 83801552 | 83801500 | ID=Msa0381580-mRNA-1:five_prime_utr;Parent=Msa0381580-mRNA-1 |
| chr3_1 | CDS | 83801553 | 83801626 | 83801553 | ID=Msa0381580-mRNA-1:cds;Parent=Msa0381580-mRNA-1 |
| chr3_1 | CDS | 83801886 | 83802189 | 83801886 | ID=Msa0381580-mRNA-1:cds;Parent=Msa0381580-mRNA-1 |
| chr3_1 | CDS | 83802905 | 83803048 | 83802905 | ID=Msa0381580-mRNA-1:cds;Parent=Msa0381580-mRNA-1 |
| chr3_1 | CDS | 83803437 | 83803538 | 83803437 | ID=Msa0381580-mRNA-1:cds;Parent=Msa0381580-mRNA-1 |
| chr3_1 | CDS | 83803718 | 83803821 | 83803718 | ID=Msa0381580-mRNA-1:cds;Parent=Msa0381580-mRNA-1 |
| chr3_1 | CDS | 83803935 | 83804006 | 83803935 | ID=Msa0381580-mRNA-1:cds;Parent=Msa0381580-mRNA-1 |
| chr3_1 | CDS | 83804321 | 83804456 | 83804321 | ID=Msa0381580-mRNA-1:cds;Parent=Msa0381580-mRNA-1 |
| chr3_1 | CDS | 83804616 | 83804716 | 83804616 | ID=Msa0381580-mRNA-1:cds;Parent=Msa0381580-mRNA-1 |
| chr3_1 | CDS | 83804807 | 83805122 | 83804807 | ID=Msa0381580-mRNA-1:cds;Parent=Msa0381580-mRNA-1 |
| chr3_1 | three_prime_UTR | 83805123 | 83805366 | 83805123 | ID=Msa0381580-mRNA-1:three_prime_utr;Parent=Msa0381580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
