Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140530 | sp|P42044|HEMH_CUCSA | 65.875 | 463 | 111 | 6 | 17 | 439 | 33 | 488 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140530 | G7J7L6 | 90.506 | 474 | 9 | 3 | 1 | 441 | 1 | 471 | 0.0 | 862 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0131310 | Msa0140530 | 0.801828 | 7.488511e-49 | -8.615850e-47 |
| Msa0140530 | Msa0146050 | 0.816008 | 6.898410e-52 | -8.615850e-47 |
| Msa0140530 | Msa0219110 | 0.803046 | 4.201903e-49 | -8.615850e-47 |
| Msa0140530 | Msa0377050 | 0.823501 | 1.338930e-53 | -8.615850e-47 |
| Msa0140530 | Msa0378910 | 0.804763 | 1.848117e-49 | -8.615850e-47 |
| Msa0140530 | Msa0381580 | 0.974082 | 1.562217e-137 | -8.615850e-47 |
| Msa0140530 | Msa0428510 | 0.826202 | 3.086655e-54 | -8.615850e-47 |
| Msa0140530 | Msa0470350 | 0.850192 | 1.990113e-60 | -8.615850e-47 |
| Msa0140530 | Msa0470870 | 0.821893 | 3.169630e-53 | -8.615850e-47 |
| Msa0140530 | Msa0619590 | 0.808176 | 3.522346e-50 | -8.615850e-47 |
| Msa0140530 | Msa0659800 | 0.852914 | 3.375557e-61 | -8.615850e-47 |
| Msa0140530 | Msa0694690 | 0.826904 | 2.099916e-54 | -8.615850e-47 |
| Msa0140530 | Msa1171060 | 0.819910 | 9.060354e-53 | -8.615850e-47 |
| Msa0140530 | Msa1444430 | 0.801673 | 8.057314e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140530 | MtrunA17_Chr3g0135611 | 90.506 | 474 | 9 | 3 | 1 | 441 | 1 | 471 | 0.0 | 862 |
| Msa0140530 | MtrunA17_Chr4g0008821 | 82.241 | 473 | 40 | 3 | 2 | 441 | 13 | 474 | 0.0 | 745 |
| Msa0140530 | MtrunA17_Chr3g0131031 | 57.944 | 428 | 139 | 5 | 4 | 395 | 22 | 444 | 1.52e-164 | 473 |
| Msa0140530 | MtrunA17_Chr8g0385271 | 57.971 | 414 | 128 | 4 | 16 | 395 | 43 | 444 | 4.94e-164 | 472 |
| Msa0140530 | MtrunA17_Chr7g0235891 | 55.224 | 67 | 28 | 1 | 329 | 395 | 75 | 139 | 1.26e-13 | 68.2 |
| Msa0140530 | MtrunA17_Chr4g0045871 | 64.444 | 45 | 14 | 1 | 358 | 400 | 5 | 49 | 6.18e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140530 | AT5G26030.1 | 62.775 | 454 | 124 | 7 | 22 | 438 | 20 | 465 | 0.0 | 553 |
| Msa0140530 | AT5G26030.2 | 62.775 | 454 | 124 | 7 | 22 | 438 | 20 | 465 | 0.0 | 553 |
| Msa0140530 | AT2G30390.1 | 65.861 | 331 | 80 | 1 | 98 | 395 | 100 | 430 | 1.51e-156 | 453 |
| Msa0140530 | AT2G30390.2 | 64.223 | 341 | 79 | 1 | 98 | 395 | 100 | 440 | 2.77e-155 | 450 |
Find 138 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGACTCTTCACACCTTTC+TGG | 0.158781 | 1_3:+74774668 | None:intergenic |
| CCTGAACGCAGTTATCATTT+TGG | 0.188485 | 1_3:+74774261 | None:intergenic |
| TGCAGGCACTTGCACTTAAA+AGG | 0.200725 | 1_3:-74775915 | Msa0140530:intron |
| GCATATGCTTCCTTGGATTT+AGG | 0.213761 | 1_3:+74776367 | None:intergenic |
| GAACATATTCGTTCGTGATT+TGG | 0.259393 | 1_3:-74777942 | Msa0140530:five_prime_UTR |
| TGAGCACACTCTTGCTTATC+AGG | 0.263907 | 1_3:-74774911 | Msa0140530:intron |
| ATCTTGGCGAAGTATTTAAC+TGG | 0.311532 | 1_3:+74774325 | None:intergenic |
| ACTAGGACTTCATCTGTATA+TGG | 0.311851 | 1_3:+74774700 | None:intergenic |
| TGAGCGAGAAACTAAGTTTC+TGG | 0.314149 | 1_3:+74777339 | None:intergenic |
| TGGGTCAAGCATCAGTGTTC+TGG | 0.320253 | 1_3:-74775561 | Msa0140530:CDS |
| TTGAATCTGGCATCAAGAAT+TGG | 0.321498 | 1_3:-74774477 | Msa0140530:CDS |
| ACATCTATGAAATCAAATTC+AGG | 0.348405 | 1_3:+74774213 | None:intergenic |
| AGTACAAGTGGTAAACTGTT+TGG | 0.352485 | 1_3:+74774025 | None:intergenic |
| TGGGCACGTGTCCCGGCTCT+TGG | 0.364586 | 1_3:-74774457 | Msa0140530:CDS |
| TCTGGTGCCAATTCTTGTAT+TGG | 0.377066 | 1_3:+74777357 | None:intergenic |
| GGCTCGACCAATACAAGAAT+TGG | 0.380637 | 1_3:-74777364 | Msa0140530:CDS |
| GGGTGAGGAAGGAAGGAATA+TGG | 0.385660 | 1_3:+74777868 | None:intergenic |
| TACCAGCACCTCTGAAGATA+TGG | 0.387408 | 1_3:-74774356 | Msa0140530:CDS |
| GCAACACACCAACTTTATCT+TGG | 0.387419 | 1_3:+74777251 | None:intergenic |
| TTCGGCTCCCAAGATTGTTT+CGG | 0.387788 | 1_3:-74776435 | Msa0140530:CDS |
| AGGGAATTGGCTCTTGAATC+TGG | 0.388268 | 1_3:-74774490 | Msa0140530:CDS |
| CAGTAGTGGATATAGAAAAC+TGG | 0.391052 | 1_3:+74775582 | None:intergenic |
| AAGGAAGCATATGCTTCTAT+TGG | 0.393699 | 1_3:-74776358 | Msa0140530:CDS |
| GTACAAGTGGTAAACTGTTT+GGG | 0.408812 | 1_3:+74774026 | None:intergenic |
| AATAGAAGCATATGCTTCCT+TGG | 0.409366 | 1_3:+74776360 | None:intergenic |
| TGGAGAAACCGAAACAATCT+TGG | 0.415074 | 1_3:+74776427 | None:intergenic |
| TGAATCTGGCATCAAGAATT+GGG | 0.420289 | 1_3:-74774476 | Msa0140530:CDS |
| TGAACATCGTCCAGCGTCTC+TGG | 0.424583 | 1_3:+74777211 | None:intergenic |
| CCAAAATGATAACTGCGTTC+AGG | 0.426212 | 1_3:-74774261 | Msa0140530:CDS |
| GTGAAAATCTGCAGCGATGA+AGG | 0.431459 | 1_3:+74777748 | None:intergenic |
| TGACATGGAGTACAGGGAAT+TGG | 0.432816 | 1_3:-74774503 | Msa0140530:CDS |
| ACTTGCACTTAAAAGGGCTT+TGG | 0.433467 | 1_3:-74775908 | Msa0140530:CDS |
| GTGTTCTGGAGCAAACGTTC+AGG | 0.435038 | 1_3:-74775547 | Msa0140530:intron |
| TCTATGTTGGGATGCGGTAC+TGG | 0.440002 | 1_3:-74775861 | Msa0140530:CDS |
| ATCCATATCTTCAGAGGTGC+TGG | 0.440328 | 1_3:+74774354 | None:intergenic |
| CTCTCTTCAAATATCTATGT+TGG | 0.442020 | 1_3:-74775874 | Msa0140530:CDS |
| CAAGAATTGGGCACGTGTCC+CGG | 0.442821 | 1_3:-74774464 | Msa0140530:CDS |
| GTCAGTTATGTTGAGAATGC+TGG | 0.450633 | 1_3:-74775009 | Msa0140530:CDS |
| GAGTGCGTTCATAACTGAAA+TGG | 0.452304 | 1_3:+74777809 | None:intergenic |
| TCTCACCCCTTCCTTCATCA+TGG | 0.453039 | 1_3:-74774434 | Msa0140530:CDS |
| CAACACACCAACTTTATCTT+GGG | 0.457672 | 1_3:+74777252 | None:intergenic |
| AAGAAATTGACATGGAGTAC+AGG | 0.459008 | 1_3:-74774510 | Msa0140530:CDS |
| TATGGTTTCAACCACTGTAC+AGG | 0.463537 | 1_3:+74774718 | None:intergenic |
| TCTCTTCAAATATCTATGTT+GGG | 0.463786 | 1_3:-74775873 | Msa0140530:CDS |
| TGAATTGCTTCTTCAGTGAA+TGG | 0.469168 | 1_3:+74775835 | None:intergenic |
| GGGAAGATGCTTATTTGTCT+AGG | 0.470752 | 1_3:-74775412 | Msa0140530:CDS |
| GCAGGCACTTGCACTTAAAA+GGG | 0.472005 | 1_3:-74775914 | Msa0140530:intron |
| AAGGGGTGAGACCAAGAGCC+GGG | 0.475278 | 1_3:+74774446 | None:intergenic |
| TGAGAACTTGAATGTTAGCT+TGG | 0.480049 | 1_3:-74774070 | Msa0140530:three_prime_UTR |
| TATTGATATAGGATATCATT+CGG | 0.487615 | 1_3:-74776453 | Msa0140530:intron |
| ATTCTTGTATTGGTCGAGCC+AGG | 0.487791 | 1_3:+74777367 | None:intergenic |
| AGAGTTGGTCGGCGTGGGTG+AGG | 0.491302 | 1_3:+74777853 | None:intergenic |
| TATCTTCAGAGGTGCTGGTA+GGG | 0.493651 | 1_3:+74774359 | None:intergenic |
| GGATCCATACCGAGATCAAA+TGG | 0.499443 | 1_3:-74774986 | Msa0140530:CDS |
| CTGCAGCGATGAAGGGATTG+AGG | 0.499797 | 1_3:+74777756 | None:intergenic |
| TTGTAACAAGTCTACATCTC+AGG | 0.507679 | 1_3:-74777407 | Msa0140530:CDS |
| GAAGGGGTGAGACCAAGAGC+CGG | 0.510828 | 1_3:+74774445 | None:intergenic |
| CTTTCTGGCCAAGCTCAACT+AGG | 0.513801 | 1_3:+74774683 | None:intergenic |
| GAAGCATATGCTTCTATTGG+AGG | 0.515453 | 1_3:-74776355 | Msa0140530:CDS |
| GCATTTATTGCTGCTGCCGA+TGG | 0.517268 | 1_3:+74774382 | None:intergenic |
| TCCTCCATTTGATCTCGGTA+TGG | 0.518447 | 1_3:+74774982 | None:intergenic |
| TAAAAGGGCTTTGGAAGCAA+AGG | 0.519261 | 1_3:-74775899 | Msa0140530:CDS |
| TTGGTCGGCGTGGGTGAGGA+AGG | 0.519954 | 1_3:+74777857 | None:intergenic |
| GGAGAAACCGAAACAATCTT+GGG | 0.521215 | 1_3:+74776428 | None:intergenic |
| TACCCGTGTTACTTGCTACT+CGG | 0.521616 | 1_3:-74777431 | Msa0140530:CDS |
| CAAAACTGATATCTACGCTC+CGG | 0.521810 | 1_3:-74776393 | Msa0140530:CDS |
| ATCTTCAGAGGTGCTGGTAG+GGG | 0.525267 | 1_3:+74774360 | None:intergenic |
| AGGGATTGAGGGTATCGGTT+GGG | 0.525449 | 1_3:+74777768 | None:intergenic |
| CGTATGTATTATATCTGTAA+AGG | 0.526845 | 1_3:+74774137 | None:intergenic |
| ATAGAAAACTGGGGATAAAG+AGG | 0.527953 | 1_3:+74775593 | None:intergenic |
| TTGGAAAGAGTTGGTCGGCG+TGG | 0.532518 | 1_3:+74777847 | None:intergenic |
| TCAGTTATGTTGAGAATGCT+GGG | 0.533403 | 1_3:-74775008 | Msa0140530:CDS |
| AAAAGGGCTTTGGAAGCAAA+GGG | 0.536438 | 1_3:-74775898 | Msa0140530:CDS |
| GTCTTTATCCATATCTTCAG+AGG | 0.540172 | 1_3:+74774348 | None:intergenic |
| GTTGTATAGATTAGTACAAG+TGG | 0.541939 | 1_3:+74774013 | None:intergenic |
| AAAACTGATATCTACGCTCC+GGG | 0.542299 | 1_3:-74776392 | Msa0140530:CDS |
| GGTGTGTTGCTTCTCAACCT+AGG | 0.543801 | 1_3:-74777238 | Msa0140530:CDS |
| AGTAAGCTGCTCATTATAAG+TGG | 0.545992 | 1_3:+74777297 | None:intergenic |
| TCGGCGTGGGTGAGGAAGGA+AGG | 0.546098 | 1_3:+74777861 | None:intergenic |
| CTAGTTGAGCTTGGCCAGAA+AGG | 0.546122 | 1_3:-74774682 | Msa0140530:CDS |
| TGCAGCGATGAAGGGATTGA+GGG | 0.547203 | 1_3:+74777757 | None:intergenic |
| GAATTGCTTCTTCAGTGAAT+GGG | 0.548173 | 1_3:+74775836 | None:intergenic |
| GCAAGATCCATGATGAAGGA+AGG | 0.554278 | 1_3:+74774427 | None:intergenic |
| TGGAAAGAGTTGGTCGGCGT+GGG | 0.554554 | 1_3:+74777848 | None:intergenic |
| TGCACTCCTCCATTTGATCT+CGG | 0.555763 | 1_3:+74774977 | None:intergenic |
| TGAAAATCTGCAGCGATGAA+GGG | 0.555815 | 1_3:+74777749 | None:intergenic |
| AGTAGTGGATATAGAAAACT+GGG | 0.558376 | 1_3:+74775583 | None:intergenic |
| GTGTGATAGATTAAGAAGGA+TGG | 0.561861 | 1_3:-74775638 | Msa0140530:intron |
| ATCTGCAAGATCCATGATGA+AGG | 0.564670 | 1_3:+74774423 | None:intergenic |
| TTATCTTGGGCAGCGTGAGT+AGG | 0.565197 | 1_3:+74777265 | None:intergenic |
| CAAGATCCATGATGAAGGAA+GGG | 0.567383 | 1_3:+74774428 | None:intergenic |
| AAGGGATTGAGGGTATCGGT+TGG | 0.567491 | 1_3:+74777767 | None:intergenic |
| GATGAAGTCCTAGTTGAGCT+TGG | 0.570100 | 1_3:-74774691 | Msa0140530:CDS |
| CAAATATCTATGTTGGGATG+CGG | 0.570330 | 1_3:-74775867 | Msa0140530:CDS |
| CTTCCTTGGATTTAGGAGCC+CGG | 0.570429 | 1_3:+74776374 | None:intergenic |
| GCGAAAAGATTAAAGAGGAA+AGG | 0.572094 | 1_3:+74777187 | None:intergenic |
| GCATATGCTTCTATTGGAGG+TGG | 0.572738 | 1_3:-74776352 | Msa0140530:CDS |
| CCTAGGTGGACCAGAGACGC+TGG | 0.572902 | 1_3:-74777221 | Msa0140530:CDS |
| CTAATGATAGTGTACCTCAC+TGG | 0.572939 | 1_3:+74774637 | None:intergenic |
| CCAGCGTCTCTGGTCCACCT+AGG | 0.573383 | 1_3:+74777221 | None:intergenic |
| CACGCTGCCCAAGATAAAGT+TGG | 0.577159 | 1_3:-74777259 | Msa0140530:CDS |
| AGAAATTGACATGGAGTACA+GGG | 0.578767 | 1_3:-74774509 | Msa0140530:CDS |
| CATCATGGATCTTGCAGATG+CGG | 0.579000 | 1_3:-74774419 | Msa0140530:CDS |
| GTGCATCTTCTTGATCATGC+AGG | 0.580701 | 1_3:-74774959 | Msa0140530:CDS |
| ATATCTTCAGAGGTGCTGGT+AGG | 0.580852 | 1_3:+74774358 | None:intergenic |
| TCTGTAAAGGAGTAAAACCC+AGG | 0.588104 | 1_3:+74774150 | None:intergenic |
| AAGATCCATGATGAAGGAAG+GGG | 0.588954 | 1_3:+74774429 | None:intergenic |
| GCATTCTCAACATAACTGAC+AGG | 0.591932 | 1_3:+74775012 | None:intergenic |
| TCTTGTGTGATAGATTAAGA+AGG | 0.597670 | 1_3:-74775642 | Msa0140530:intron |
| ATGCAGGAATTGAAAGCTAG+AGG | 0.599634 | 1_3:-74774943 | Msa0140530:CDS |
| CAACATAGATATTTGAAGAG+AGG | 0.602336 | 1_3:+74775875 | None:intergenic |
| GACTCTTGAAGAAATTGACA+TGG | 0.603916 | 1_3:-74774518 | Msa0140530:CDS |
| ACGACGACGTTGGAAAGAGT+TGG | 0.607940 | 1_3:+74777838 | None:intergenic |
| ACTGATGCTTGACCCAGTAG+TGG | 0.613715 | 1_3:+74775568 | None:intergenic |
| GTCGAGTGGGCCCTGTACAG+TGG | 0.613972 | 1_3:-74774729 | Msa0140530:CDS |
| GCTCCGGGCTCCTAAATCCA+AGG | 0.618946 | 1_3:-74776377 | Msa0140530:CDS |
| GAGGAAGGAAGGAATATGGT+TGG | 0.620321 | 1_3:+74777872 | None:intergenic |
| ACGCAAAATTACAGATGACC+AGG | 0.621225 | 1_3:-74776320 | Msa0140530:intron |
| ATGGATTGCCAGAGTCGAGT+GGG | 0.621399 | 1_3:-74774742 | Msa0140530:intron |
| ATGGTTTCAACCACTGTACA+GGG | 0.624392 | 1_3:+74774719 | None:intergenic |
| GATCTGCGAAAAGATTAAAG+AGG | 0.632933 | 1_3:+74777182 | None:intergenic |
| CATAACTGACAGGAACACCA+TGG | 0.639549 | 1_3:+74775022 | None:intergenic |
| GATGGATTGCCAGAGTCGAG+TGG | 0.639812 | 1_3:-74774743 | Msa0140530:intron |
| GATGAAGGGATTGAGGGTAT+CGG | 0.640808 | 1_3:+74777763 | None:intergenic |
| GTTGGCGTGTACGTCAAAGA+TGG | 0.646233 | 1_3:+74777890 | None:intergenic |
| TCTTGGCGAAGTATTTAACT+GGG | 0.647791 | 1_3:+74774326 | None:intergenic |
| ATAACTGACAGGAACACCAT+GGG | 0.647820 | 1_3:+74775023 | None:intergenic |
| GTGTTGCTTCTCAACCTAGG+TGG | 0.663732 | 1_3:-74777235 | Msa0140530:CDS |
| TCTATGAAATCAAATTCAGG+TGG | 0.664584 | 1_3:+74774216 | None:intergenic |
| GGTGATAGAAGCTCTACCAT+CGG | 0.665588 | 1_3:-74774398 | Msa0140530:CDS |
| GGATGGAATAACAAGGCTCG+TGG | 0.666352 | 1_3:-74775621 | Msa0140530:CDS |
| CGACGTTGGAAAGAGTTGGT+CGG | 0.676199 | 1_3:+74777842 | None:intergenic |
| ATCCGAGTAGCAAGTAACAC+GGG | 0.692447 | 1_3:+74777429 | None:intergenic |
| AATCCGAGTAGCAAGTAACA+CGG | 0.705787 | 1_3:+74777428 | None:intergenic |
| TTAAGAAGGATGGAATAACA+AGG | 0.706239 | 1_3:-74775628 | Msa0140530:CDS |
| CAGTTATGTTGAGAATGCTG+GGG | 0.717752 | 1_3:-74775007 | Msa0140530:CDS |
| TCCATACCGAGATCAAATGG+AGG | 0.721527 | 1_3:-74774983 | Msa0140530:CDS |
| GTAGTGGATATAGAAAACTG+GGG | 0.817706 | 1_3:+74775584 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTACATATATTAGAA+TGG | + | chr1_3:74774456-74774475 | None:intergenic | 10.0% |
| !! | TCTAATATATGTAAAATAAT+TGG | - | chr1_3:74774457-74774476 | Msa0140530:CDS | 10.0% |
| !!! | ATTTATTGTATTTTATTGAT+TGG | - | chr1_3:74775320-74775339 | Msa0140530:intron | 10.0% |
| !!! | CTGATAATTATTTTTAAAAA+TGG | + | chr1_3:74775820-74775839 | None:intergenic | 10.0% |
| !!! | TTTATTTTATAGAAAATAAC+AGG | + | chr1_3:74775945-74775964 | None:intergenic | 10.0% |
| !! | AAAAATAGAAAGAAAAAAAT+TGG | + | chr1_3:74776882-74776901 | None:intergenic | 10.0% |
| !! | AGAAAAGTAAAAATGAAATA+GGG | + | chr1_3:74774293-74774312 | None:intergenic | 15.0% |
| !! | AAGAAAAGTAAAAATGAAAT+AGG | + | chr1_3:74774294-74774313 | None:intergenic | 15.0% |
| !! | ACATTTGATATAAAATGTAT+AGG | + | chr1_3:74776148-74776167 | None:intergenic | 15.0% |
| !! | GTATCAATAACTTAAATAAA+TGG | + | chr1_3:74776206-74776225 | None:intergenic | 15.0% |
| !!! | TTTATTTAAGTTATTGATAC+AGG | - | chr1_3:74776206-74776225 | Msa0140530:intron | 15.0% |
| !!! | ACTGATATTATTTAATTTTC+AGG | - | chr1_3:74776514-74776533 | Msa0140530:intron | 15.0% |
| !!! | CTGATATTATTTAATTTTCA+GGG | - | chr1_3:74776515-74776534 | Msa0140530:intron | 15.0% |
| !!! | TTTTTTTCTTTCTATTTTTC+AGG | - | chr1_3:74776883-74776902 | Msa0140530:intron | 15.0% |
| !!! | TGGTATTGACTTTTTTATTT+TGG | - | chr1_3:74774025-74774044 | Msa0140530:three_prime_UTR | 20.0% |
| !!! | TATGTAAAATAATTGGTTTC+AGG | - | chr1_3:74774464-74774483 | Msa0140530:CDS | 20.0% |
| !!! | TCATTTTTATGCTAATTGTT+TGG | - | chr1_3:74774842-74774861 | Msa0140530:intron | 20.0% |
| !!! | TGTTTACTTAAATTGTTTTC+CGG | + | chr1_3:74775078-74775097 | None:intergenic | 20.0% |
| !!! | ATATTGTATAATGGAATACA+TGG | - | chr1_3:74775157-74775176 | Msa0140530:intron | 20.0% |
| !! | TATTGATATAGGATATCATT+CGG | - | chr1_3:74775494-74775513 | Msa0140530:intron | 20.0% |
| !!! | AATGGAAATAACATCTTTTA+TGG | - | chr1_3:74775996-74776015 | Msa0140530:intron | 20.0% |
| !!! | ATGGAAATAACATCTTTTAT+GGG | - | chr1_3:74775997-74776016 | Msa0140530:intron | 20.0% |
| !! | TAACAATAAACCCAAATTTA+AGG | + | chr1_3:74776277-74776296 | None:intergenic | 20.0% |
| !!! | TATACTTCATTTTTTTTCCT+GGG | - | chr1_3:74777780-74777799 | Msa0140530:CDS | 20.0% |
| ! | AGTAAAAATGAAATAGGGTT+TGG | + | chr1_3:74774288-74774307 | None:intergenic | 25.0% |
| ! | TGAGATTTATTGAGAGAATT+TGG | + | chr1_3:74774321-74774340 | None:intergenic | 25.0% |
| ! | AATTCTCTCAATAAATCTCA+TGG | - | chr1_3:74774321-74774340 | Msa0140530:CDS | 25.0% |
| ! | TGCAAAAAAAAGTAACATAC+AGG | + | chr1_3:74774790-74774809 | None:intergenic | 25.0% |
| !! | GTTTACTTAAATTGTTTTCC+GGG | + | chr1_3:74775077-74775096 | None:intergenic | 25.0% |
| !! | TAAATGTCAATCATGAGTTT+TGG | - | chr1_3:74775130-74775149 | Msa0140530:intron | 25.0% |
| !! | TTTGGTAGCATATTGTATAA+TGG | - | chr1_3:74775148-74775167 | Msa0140530:intron | 25.0% |
| !!! | TTGTATTTTATTGATTGGTG+TGG | - | chr1_3:74775325-74775344 | Msa0140530:intron | 25.0% |
| !!! | TGTATTTTATTGATTGGTGT+GGG | - | chr1_3:74775326-74775345 | Msa0140530:intron | 25.0% |
| ! | TCTGTTTATGTTTGATGTAA+TGG | - | chr1_3:74775349-74775368 | Msa0140530:intron | 25.0% |
| !! | TATGTCTCTTGTATTGATAT+AGG | - | chr1_3:74775483-74775502 | Msa0140530:intron | 25.0% |
| ! | GGGGAAAATAAAAATAAGAA+AGG | + | chr1_3:74775678-74775697 | None:intergenic | 25.0% |
| ! | TTGAATGTAATCATGTATGT+CGG | + | chr1_3:74775791-74775810 | None:intergenic | 25.0% |
| ! | TCTCTTCAAATATCTATGTT+GGG | - | chr1_3:74776074-74776093 | Msa0140530:intron | 25.0% |
| !! | CATTTTGTCACCTTAAATTT+GGG | - | chr1_3:74776264-74776283 | Msa0140530:intron | 25.0% |
| ! | AAATTCTCTAAATCATGCAA+GGG | + | chr1_3:74776452-74776471 | None:intergenic | 25.0% |
| ! | AAAATTCTCTAAATCATGCA+AGG | + | chr1_3:74776453-74776472 | None:intergenic | 25.0% |
| ! | TTGATACCAAGAGTTTATAA+TGG | + | chr1_3:74776571-74776590 | None:intergenic | 25.0% |
| ! | ATCAAAGAGAAGGTTATATT+AGG | - | chr1_3:74776586-74776605 | Msa0140530:intron | 25.0% |
| ! | AGGTTCAGAAAAAAAATCAT+AGG | + | chr1_3:74776793-74776812 | None:intergenic | 25.0% |
| ! | TTTGTATTCTTGCTTTCTTT+GGG | - | chr1_3:74777149-74777168 | Msa0140530:intron | 25.0% |
| ! | CAATAAAAATGTCAGATACA+GGG | + | chr1_3:74777184-74777203 | None:intergenic | 25.0% |
| !! | TATCTGACATTTTTATTGGA+TGG | - | chr1_3:74777186-74777205 | Msa0140530:CDS | 25.0% |
| ! | AATTGAACCAAAAAACATCT+TGG | + | chr1_3:74777641-74777660 | None:intergenic | 25.0% |
| !!! | GATGTTTTTTGGTTCAATTT+TGG | - | chr1_3:74777642-74777661 | Msa0140530:intron | 25.0% |
| ! | ACATCTATGAAATCAAATTC+AGG | + | chr1_3:74777737-74777756 | None:intergenic | 25.0% |
| !!! | GTATACTTCATTTTTTTTCC+TGG | - | chr1_3:74777779-74777798 | Msa0140530:CDS | 25.0% |
| ! | CGTATGTATTATATCTGTAA+AGG | + | chr1_3:74777813-74777832 | None:intergenic | 25.0% |
| TAGGGTTTGGAAATAATTGA+AGG | + | chr1_3:74774275-74774294 | None:intergenic | 30.0% | |
| GAATGGTCAATTGAAAAGAA+GGG | + | chr1_3:74774439-74774458 | None:intergenic | 30.0% | |
| AGAATGGTCAATTGAAAAGA+AGG | + | chr1_3:74774440-74774459 | None:intergenic | 30.0% | |
| TTTATGCTAATTGTTTGGAG+CGG | - | chr1_3:74774847-74774866 | Msa0140530:intron | 30.0% | |
| GTGATCAAATCTCAATAGAT+AGG | + | chr1_3:74774923-74774942 | None:intergenic | 30.0% | |
| CGACTTAATGACTCTAATAT+TGG | - | chr1_3:74775044-74775063 | Msa0140530:CDS | 30.0% | |
| GTCATGTGATTTCAATTTCT+TGG | - | chr1_3:74775213-74775232 | Msa0140530:intron | 30.0% | |
| ATGTGATTTCAATTTCTTGG+TGG | - | chr1_3:74775216-74775235 | Msa0140530:intron | 30.0% | |
| TGTGATTTCAATTTCTTGGT+GGG | - | chr1_3:74775217-74775236 | Msa0140530:intron | 30.0% | |
| AACTGTTGTATATTGATCAC+TGG | - | chr1_3:74775376-74775395 | Msa0140530:intron | 30.0% | |
| ACTGTTGTATATTGATCACT+GGG | - | chr1_3:74775377-74775396 | Msa0140530:intron | 30.0% | |
| ! | GTAGATATCAGTTTTGCTAA+TGG | + | chr1_3:74775550-74775569 | None:intergenic | 30.0% |
| ! | TCATCTGTAATTTTGCGTAA+AGG | + | chr1_3:74775625-74775644 | None:intergenic | 30.0% |
| ! | TTTTCCCCTTATATGTTGTT+TGG | - | chr1_3:74775690-74775709 | Msa0140530:intron | 30.0% |
| ATAGCCAAACAACATATAAG+GGG | + | chr1_3:74775697-74775716 | None:intergenic | 30.0% | |
| CATAGCCAAACAACATATAA+GGG | + | chr1_3:74775698-74775717 | None:intergenic | 30.0% | |
| ACATAGCCAAACAACATATA+AGG | + | chr1_3:74775699-74775718 | None:intergenic | 30.0% | |
| AACAGTGTTACAGTTTAGAA+TGG | - | chr1_3:74775978-74775997 | Msa0140530:intron | 30.0% | |
| CAACATAGATATTTGAAGAG+AGG | + | chr1_3:74776075-74776094 | None:intergenic | 30.0% | |
| CTCTCTTCAAATATCTATGT+TGG | - | chr1_3:74776073-74776092 | Msa0140530:intron | 30.0% | |
| ! | CCAAATTTAAGGTGACAAAA+TGG | + | chr1_3:74776266-74776285 | None:intergenic | 30.0% |
| ! | CCATTTTGTCACCTTAAATT+TGG | - | chr1_3:74776263-74776282 | Msa0140530:intron | 30.0% |
| TCTTGTGTGATAGATTAAGA+AGG | - | chr1_3:74776305-74776324 | Msa0140530:intron | 30.0% | |
| TTAAGAAGGATGGAATAACA+AGG | - | chr1_3:74776319-74776338 | Msa0140530:intron | 30.0% | |
| !! | AGTAGTGGATATAGAAAACT+GGG | + | chr1_3:74776367-74776386 | None:intergenic | 30.0% |
| ! | AGTTTTCTATATCCACTACT+GGG | - | chr1_3:74776367-74776386 | Msa0140530:CDS | 30.0% |
| ! | CAAGAGTTTATAATGGAAAC+AGG | + | chr1_3:74776564-74776583 | None:intergenic | 30.0% |
| CTGTTTCCATTATAAACTCT+TGG | - | chr1_3:74776562-74776581 | Msa0140530:intron | 30.0% | |
| AGAAGGTTATATTAGGTCAA+TGG | - | chr1_3:74776593-74776612 | Msa0140530:intron | 30.0% | |
| AATACGCTTTCCTTAAAACT+CGG | - | chr1_3:74776684-74776703 | Msa0140530:intron | 30.0% | |
| !!! | TTTTTTCTGAACCTGTTAGT+AGG | - | chr1_3:74776799-74776818 | Msa0140530:intron | 30.0% |
| ! | TTTTTCTGAACCTGTTAGTA+GGG | - | chr1_3:74776800-74776819 | Msa0140530:intron | 30.0% |
| AGAAAAAAATTGGTATGCCA+CGG | + | chr1_3:74776872-74776891 | None:intergenic | 30.0% | |
| !!! | ATGATATTTTTTAGTGCCCA+TGG | - | chr1_3:74776908-74776927 | Msa0140530:intron | 30.0% |
| TGTACTGTTCAATTAATAGC+TGG | - | chr1_3:74777126-74777145 | Msa0140530:intron | 30.0% | |
| GTTTGTATTCTTGCTTTCTT+TGG | - | chr1_3:74777148-74777167 | Msa0140530:intron | 30.0% | |
| CCAATAAAAATGTCAGATAC+AGG | + | chr1_3:74777185-74777204 | None:intergenic | 30.0% | |
| ! | CCTGTATCTGACATTTTTAT+TGG | - | chr1_3:74777182-74777201 | Msa0140530:CDS | 30.0% |
| CAATAAGCTATCGTAGTAAA+AGG | + | chr1_3:74777336-74777355 | None:intergenic | 30.0% | |
| ! | CTTTTACTACGATAGCTTAT+TGG | - | chr1_3:74777334-74777353 | Msa0140530:CDS | 30.0% |
| TCTATGAAATCAAATTCAGG+TGG | + | chr1_3:74777734-74777753 | None:intergenic | 30.0% | |
| GTTGTATAGATTAGTACAAG+TGG | + | chr1_3:74777937-74777956 | None:intergenic | 30.0% | |
| GAACATATTCGTTCGTGATT+TGG | - | chr1_3:74774005-74774024 | Msa0140530:three_prime_UTR | 35.0% | |
| ! | CGTAAAAGTGTAGTAGAGTT+GGG | + | chr1_3:74774234-74774253 | None:intergenic | 35.0% |
| ! | TCGTAAAAGTGTAGTAGAGT+TGG | + | chr1_3:74774235-74774254 | None:intergenic | 35.0% |
| TTGTAACAAGTCTACATCTC+AGG | - | chr1_3:74774540-74774559 | Msa0140530:CDS | 35.0% | |
| AGTAAGCTGCTCATTATAAG+TGG | + | chr1_3:74774653-74774672 | None:intergenic | 35.0% | |
| CAACACACCAACTTTATCTT+GGG | + | chr1_3:74774698-74774717 | None:intergenic | 35.0% | |
| GCGAAAAGATTAAAGAGGAA+AGG | + | chr1_3:74774763-74774782 | None:intergenic | 35.0% | |
| GATCTGCGAAAAGATTAAAG+AGG | + | chr1_3:74774768-74774787 | None:intergenic | 35.0% | |
| TAGATAGGCTCCTACTAATT+AGG | + | chr1_3:74774908-74774927 | None:intergenic | 35.0% | |
| !! | CATCTGGATTCTTAGTTTGT+TGG | - | chr1_3:74774965-74774984 | Msa0140530:CDS | 35.0% |
| !! | TCTAATATTGGCTTAGATCC+CGG | - | chr1_3:74775056-74775075 | Msa0140530:intron | 35.0% |
| ! | AATAGAAGCATATGCTTCCT+TGG | + | chr1_3:74775590-74775609 | None:intergenic | 35.0% |
| ! | AAGGAAGCATATGCTTCTAT+TGG | - | chr1_3:74775589-74775608 | Msa0140530:CDS | 35.0% |
| CAAAAAAATTGAACTGCACC+TGG | + | chr1_3:74775648-74775667 | None:intergenic | 35.0% | |
| TTACGTGTTAGTGTCATATC+TGG | - | chr1_3:74775843-74775862 | Msa0140530:CDS | 35.0% | |
| CTCTTCAAGAGAATACTTTG+TGG | - | chr1_3:74775912-74775931 | Msa0140530:CDS | 35.0% | |
| CAAATATCTATGTTGGGATG+CGG | - | chr1_3:74776080-74776099 | Msa0140530:intron | 35.0% | |
| GAATTGCTTCTTCAGTGAAT+GGG | + | chr1_3:74776114-74776133 | None:intergenic | 35.0% | |
| TGAATTGCTTCTTCAGTGAA+TGG | + | chr1_3:74776115-74776134 | None:intergenic | 35.0% | |
| GTGTGATAGATTAAGAAGGA+TGG | - | chr1_3:74776309-74776328 | Msa0140530:intron | 35.0% | |
| ATAGAAAACTGGGGATAAAG+AGG | + | chr1_3:74776357-74776376 | None:intergenic | 35.0% | |
| !! | GTAGTGGATATAGAAAACTG+GGG | + | chr1_3:74776366-74776385 | None:intergenic | 35.0% |
| !! | CAGTAGTGGATATAGAAAAC+TGG | + | chr1_3:74776368-74776387 | None:intergenic | 35.0% |
| ! | CAGTTTTCTATATCCACTAC+TGG | - | chr1_3:74776366-74776385 | Msa0140530:CDS | 35.0% |
| AACTCTTGGTATCAAAGAGA+AGG | - | chr1_3:74776576-74776595 | Msa0140530:intron | 35.0% | |
| TTTCCTTAAAACTCGGTATC+CGG | - | chr1_3:74776691-74776710 | Msa0140530:intron | 35.0% | |
| ATTCAATACAAGTGGATGGT+GGG | + | chr1_3:74776748-74776767 | None:intergenic | 35.0% | |
| TATTCAATACAAGTGGATGG+TGG | + | chr1_3:74776749-74776768 | None:intergenic | 35.0% | |
| ACGTATTCAATACAAGTGGA+TGG | + | chr1_3:74776752-74776771 | None:intergenic | 35.0% | |
| TCCACTTGTATTGAATACGT+TGG | - | chr1_3:74776752-74776771 | Msa0140530:intron | 35.0% | |
| TCCAACGTATTCAATACAAG+TGG | + | chr1_3:74776756-74776775 | None:intergenic | 35.0% | |
| TGTATTGAATACGTTGGACA+TGG | - | chr1_3:74776758-74776777 | Msa0140530:intron | 35.0% | |
| ! | ATTTTGTAAGCCCTACTAAC+AGG | + | chr1_3:74776813-74776832 | None:intergenic | 35.0% |
| GTAGGGCTTACAAAATTCAA+AGG | - | chr1_3:74776817-74776836 | Msa0140530:intron | 35.0% | |
| TCAGTTATGTTGAGAATGCT+GGG | - | chr1_3:74776939-74776958 | Msa0140530:intron | 35.0% | |
| ACTAGGACTTCATCTGTATA+TGG | + | chr1_3:74777250-74777269 | None:intergenic | 35.0% | |
| GACTCTTGAAGAAATTGACA+TGG | - | chr1_3:74777429-74777448 | Msa0140530:CDS | 35.0% | |
| AAGAAATTGACATGGAGTAC+AGG | - | chr1_3:74777437-74777456 | Msa0140530:CDS | 35.0% | |
| AGAAATTGACATGGAGTACA+GGG | - | chr1_3:74777438-74777457 | Msa0140530:CDS | 35.0% | |
| TTGAATCTGGCATCAAGAAT+TGG | - | chr1_3:74777470-74777489 | Msa0140530:intron | 35.0% | |
| TGAATCTGGCATCAAGAATT+GGG | - | chr1_3:74777471-74777490 | Msa0140530:intron | 35.0% | |
| GTCTTTATCCATATCTTCAG+AGG | + | chr1_3:74777602-74777621 | None:intergenic | 35.0% | |
| ! | TCTTGGCGAAGTATTTAACT+GGG | + | chr1_3:74777624-74777643 | None:intergenic | 35.0% |
| ! | ATCTTGGCGAAGTATTTAAC+TGG | + | chr1_3:74777625-74777644 | None:intergenic | 35.0% |
| !!! | TACTTCGCCAAGATGTTTTT+TGG | - | chr1_3:74777631-74777650 | Msa0140530:intron | 35.0% |
| ! | CTGAACGCAGTTATCATTTT+GGG | + | chr1_3:74777688-74777707 | None:intergenic | 35.0% |
| TGAGAACTTGAATGTTAGCT+TGG | - | chr1_3:74777877-74777896 | Msa0140530:five_prime_UTR | 35.0% | |
| GTACAAGTGGTAAACTGTTT+GGG | + | chr1_3:74777924-74777943 | None:intergenic | 35.0% | |
| AGTACAAGTGGTAAACTGTT+TGG | + | chr1_3:74777925-74777944 | None:intergenic | 35.0% | |
| GAGTGCGTTCATAACTGAAA+TGG | + | chr1_3:74774141-74774160 | None:intergenic | 40.0% | |
| TGAAAATCTGCAGCGATGAA+GGG | + | chr1_3:74774201-74774220 | None:intergenic | 40.0% | |
| AATCCGAGTAGCAAGTAACA+CGG | + | chr1_3:74774522-74774541 | None:intergenic | 40.0% | |
| ! | TCTGGTGCCAATTCTTGTAT+TGG | + | chr1_3:74774593-74774612 | None:intergenic | 40.0% |
| TGAGCGAGAAACTAAGTTTC+TGG | + | chr1_3:74774611-74774630 | None:intergenic | 40.0% | |
| GCAACACACCAACTTTATCT+TGG | + | chr1_3:74774699-74774718 | None:intergenic | 40.0% | |
| AGGCTCCTACTAATTAGGAA+GGG | + | chr1_3:74774903-74774922 | None:intergenic | 40.0% | |
| TAGGCTCCTACTAATTAGGA+AGG | + | chr1_3:74774904-74774923 | None:intergenic | 40.0% | |
| TTGAGATTTGATCACTCAGC+TGG | - | chr1_3:74774928-74774947 | Msa0140530:CDS | 40.0% | |
| TGTGCCTAGATTCCTAATTG+AGG | - | chr1_3:74774997-74775016 | Msa0140530:CDS | 40.0% | |
| TGAGCCTCAATTAGGAATCT+AGG | + | chr1_3:74775004-74775023 | None:intergenic | 40.0% | |
| AGATTGTGTGAGCCTCAATT+AGG | + | chr1_3:74775012-74775031 | None:intergenic | 40.0% | |
| !! | ACAAGAGTGCTGCCATAATT+TGG | - | chr1_3:74775095-74775114 | Msa0140530:intron | 40.0% |
| CTGCCATAATTTGGTAGGAT+GGG | - | chr1_3:74775104-74775123 | Msa0140530:intron | 40.0% | |
| TCACCCATCCTACCAAATTA+TGG | + | chr1_3:74775110-74775129 | None:intergenic | 40.0% | |
| ATGGAATACATGGTTGTGCT+AGG | - | chr1_3:74775167-74775186 | Msa0140530:intron | 40.0% | |
| ! | GTGGGTGCTGCAAATTATTT+GGG | - | chr1_3:74775235-74775254 | Msa0140530:intron | 40.0% |
| !!! | TTGTGACGTTTTGGAGAGAT+TGG | - | chr1_3:74775290-74775309 | Msa0140530:intron | 40.0% |
| !!! | TGTGACGTTTTGGAGAGATT+GGG | - | chr1_3:74775291-74775310 | Msa0140530:intron | 40.0% |
| GGAGAAACCGAAACAATCTT+GGG | + | chr1_3:74775522-74775541 | None:intergenic | 40.0% | |
| TGGAGAAACCGAAACAATCT+TGG | + | chr1_3:74775523-74775542 | None:intergenic | 40.0% | |
| ! | TCAGTTTTGCTAATGGTTGC+TGG | + | chr1_3:74775543-74775562 | None:intergenic | 40.0% |
| CAAAACTGATATCTACGCTC+CGG | - | chr1_3:74775554-74775573 | Msa0140530:CDS | 40.0% | |
| AAAACTGATATCTACGCTCC+GGG | - | chr1_3:74775555-74775574 | Msa0140530:CDS | 40.0% | |
| GCATATGCTTCCTTGGATTT+AGG | + | chr1_3:74775583-74775602 | None:intergenic | 40.0% | |
| GAAGCATATGCTTCTATTGG+AGG | - | chr1_3:74775592-74775611 | Msa0140530:CDS | 40.0% | |
| ACGCAAAATTACAGATGACC+AGG | - | chr1_3:74775627-74775646 | Msa0140530:CDS | 40.0% | |
| CTCTAGATTGAAGACATGTC+CGG | - | chr1_3:74775756-74775775 | Msa0140530:intron | 40.0% | |
| !! | TGTATGTCGGTGTCAAATAC+CGG | + | chr1_3:74775778-74775797 | None:intergenic | 40.0% |
| GTTAGTGTCATATCTGGTGT+AGG | - | chr1_3:74775849-74775868 | Msa0140530:CDS | 40.0% | |
| ACTTGCACTTAAAAGGGCTT+TGG | - | chr1_3:74776039-74776058 | Msa0140530:intron | 40.0% | |
| !! | TAAAAGGGCTTTGGAAGCAA+AGG | - | chr1_3:74776048-74776067 | Msa0140530:intron | 40.0% |
| !! | AAAAGGGCTTTGGAAGCAAA+GGG | - | chr1_3:74776049-74776068 | Msa0140530:intron | 40.0% |
| AACGTTCAGGTACTATGTAG+TGG | - | chr1_3:74776413-74776432 | Msa0140530:CDS | 40.0% | |
| GGGAAGATGCTTATTTGTCT+AGG | - | chr1_3:74776535-74776554 | Msa0140530:intron | 40.0% | |
| AGAATAAAACTCACCTCCCT+TGG | + | chr1_3:74776657-74776676 | None:intergenic | 40.0% | |
| ! | TTTTACTCCAATCTGAACCG+TGG | - | chr1_3:74776852-74776871 | Msa0140530:intron | 40.0% |
| ATAACTGACAGGAACACCAT+GGG | + | chr1_3:74776927-74776946 | None:intergenic | 40.0% | |
| GCATTCTCAACATAACTGAC+AGG | + | chr1_3:74776938-74776957 | None:intergenic | 40.0% | |
| GTCAGTTATGTTGAGAATGC+TGG | - | chr1_3:74776938-74776957 | Msa0140530:intron | 40.0% | |
| CAGTTATGTTGAGAATGCTG+GGG | - | chr1_3:74776940-74776959 | Msa0140530:intron | 40.0% | |
| ATGCAGGAATTGAAAGCTAG+AGG | - | chr1_3:74777004-74777023 | Msa0140530:intron | 40.0% | |
| CTCAAGCTCAAATCAGAAGA+TGG | + | chr1_3:74777094-74777113 | None:intergenic | 40.0% | |
| ATGGTTTCAACCACTGTACA+GGG | + | chr1_3:74777231-74777250 | None:intergenic | 40.0% | |
| TATGGTTTCAACCACTGTAC+AGG | + | chr1_3:74777232-74777251 | None:intergenic | 40.0% | |
| AAAGACTCTTCACACCTTTC+TGG | + | chr1_3:74777282-74777301 | None:intergenic | 40.0% | |
| ! | CTAATGATAGTGTACCTCAC+TGG | + | chr1_3:74777313-74777332 | None:intergenic | 40.0% |
| AAGATCCATGATGAAGGAAG+GGG | + | chr1_3:74777521-74777540 | None:intergenic | 40.0% | |
| CAAGATCCATGATGAAGGAA+GGG | + | chr1_3:74777522-74777541 | None:intergenic | 40.0% | |
| ATCTGCAAGATCCATGATGA+AGG | + | chr1_3:74777527-74777546 | None:intergenic | 40.0% | |
| ! | CCTGAACGCAGTTATCATTT+TGG | + | chr1_3:74777689-74777708 | None:intergenic | 40.0% |
| CCAAAATGATAACTGCGTTC+AGG | - | chr1_3:74777686-74777705 | Msa0140530:intron | 40.0% | |
| TCTGTAAAGGAGTAAAACCC+AGG | + | chr1_3:74777800-74777819 | None:intergenic | 40.0% | |
| GAGGAAGGAAGGAATATGGT+TGG | + | chr1_3:74774078-74774097 | None:intergenic | 45.0% | |
| ! | GATGAAGGGATTGAGGGTAT+CGG | + | chr1_3:74774187-74774206 | None:intergenic | 45.0% |
| GTGAAAATCTGCAGCGATGA+AGG | + | chr1_3:74774202-74774221 | None:intergenic | 45.0% | |
| ! | GTTTGTTGAATTGCTGCTGC+TGG | + | chr1_3:74774417-74774436 | None:intergenic | 45.0% |
| !! | TACCCGTGTTACTTGCTACT+CGG | - | chr1_3:74774516-74774535 | Msa0140530:CDS | 45.0% |
| ATCCGAGTAGCAAGTAACAC+GGG | + | chr1_3:74774521-74774540 | None:intergenic | 45.0% | |
| !!! | GCATCCTTGTTTTTGTGTCC+TGG | - | chr1_3:74774562-74774581 | Msa0140530:intron | 45.0% |
| ! | ATTCTTGTATTGGTCGAGCC+AGG | + | chr1_3:74774583-74774602 | None:intergenic | 45.0% |
| GGCTCGACCAATACAAGAAT+TGG | - | chr1_3:74774583-74774602 | Msa0140530:intron | 45.0% | |
| ! | ATGCTAATTGTTTGGAGCGG+AGG | - | chr1_3:74774850-74774869 | Msa0140530:intron | 45.0% |
| CTACTAATTAGGAAGGGGGT+AGG | + | chr1_3:74774897-74774916 | None:intergenic | 45.0% | |
| CTACCCCCTTCCTAATTAGT+AGG | - | chr1_3:74774895-74774914 | Msa0140530:intron | 45.0% | |
| GCTCCTACTAATTAGGAAGG+GGG | + | chr1_3:74774901-74774920 | None:intergenic | 45.0% | |
| GGCTCCTACTAATTAGGAAG+GGG | + | chr1_3:74774902-74774921 | None:intergenic | 45.0% | |
| GGCTGTTCTGATATTGCATC+TGG | - | chr1_3:74774949-74774968 | Msa0140530:CDS | 45.0% | |
| ! | GAGTGCTGCCATAATTTGGT+AGG | - | chr1_3:74775099-74775118 | Msa0140530:intron | 45.0% |
| GCTGCCATAATTTGGTAGGA+TGG | - | chr1_3:74775103-74775122 | Msa0140530:intron | 45.0% | |
| ! | GGTGGGTGCTGCAAATTATT+TGG | - | chr1_3:74775234-74775253 | Msa0140530:intron | 45.0% |
| ! | TGGGTTCTAACAGTAGAACC+TGG | - | chr1_3:74775254-74775273 | Msa0140530:intron | 45.0% |
| ! | GGGTTCTAACAGTAGAACCT+GGG | - | chr1_3:74775255-74775274 | Msa0140530:intron | 45.0% |
| ! | GGTTCTAACAGTAGAACCTG+GGG | - | chr1_3:74775256-74775275 | Msa0140530:intron | 45.0% |
| GTTCTAACAGTAGAACCTGG+GGG | - | chr1_3:74775257-74775276 | Msa0140530:intron | 45.0% | |
| ! | TGGGCATGTTTGTGACGTTT+TGG | - | chr1_3:74775281-74775300 | Msa0140530:intron | 45.0% |
| !!! | GTGACGTTTTGGAGAGATTG+GGG | - | chr1_3:74775292-74775311 | Msa0140530:intron | 45.0% |
| CCAAAGAGAAGATAGACCAC+TGG | + | chr1_3:74775414-74775433 | None:intergenic | 45.0% | |
| CCAGTGGTCTATCTTCTCTT+TGG | - | chr1_3:74775411-74775430 | Msa0140530:CDS | 45.0% | |
| TTCGGCTCCCAAGATTGTTT+CGG | - | chr1_3:74775512-74775531 | Msa0140530:intron | 45.0% | |
| GCATATGCTTCTATTGGAGG+TGG | - | chr1_3:74775595-74775614 | Msa0140530:CDS | 45.0% | |
| GTTGTTTGGCTATGTAGCAC+TGG | - | chr1_3:74775704-74775723 | Msa0140530:intron | 45.0% | |
| CTTGTTTGGCTATGTAGCAC+TGG | - | chr1_3:74775731-74775750 | Msa0140530:intron | 45.0% | |
| ! | ATGGGTTCTGATGATCATGC+AGG | - | chr1_3:74776015-74776034 | Msa0140530:intron | 45.0% |
| TGCAGGCACTTGCACTTAAA+AGG | - | chr1_3:74776032-74776051 | Msa0140530:intron | 45.0% | |
| GCAGGCACTTGCACTTAAAA+GGG | - | chr1_3:74776033-74776052 | Msa0140530:intron | 45.0% | |
| ! | TCGAGAGTTTTTCTGAGCCA+AGG | - | chr1_3:74776637-74776656 | Msa0140530:intron | 45.0% |
| ! | CGAGAGTTTTTCTGAGCCAA+GGG | - | chr1_3:74776638-74776657 | Msa0140530:intron | 45.0% |
| ! | CCTCGGAATAATCGGTTCTT+GGG | + | chr1_3:74776717-74776736 | None:intergenic | 45.0% |
| CCAAGAACCGATTATTCCGA+GGG | - | chr1_3:74776715-74776734 | Msa0140530:intron | 45.0% | |
| CAAGAACCGATTATTCCGAG+GGG | - | chr1_3:74776716-74776735 | Msa0140530:intron | 45.0% | |
| ATTGGACCCCTCGGAATAAT+CGG | + | chr1_3:74776725-74776744 | None:intergenic | 45.0% | |
| !! | ATACAAGTGGATGGTGGGAT+TGG | + | chr1_3:74776743-74776762 | None:intergenic | 45.0% |
| CATAACTGACAGGAACACCA+TGG | + | chr1_3:74776928-74776947 | None:intergenic | 45.0% | |
| GGATCCATACCGAGATCAAA+TGG | - | chr1_3:74776961-74776980 | Msa0140530:intron | 45.0% | |
| TCCATACCGAGATCAAATGG+AGG | - | chr1_3:74776964-74776983 | Msa0140530:intron | 45.0% | |
| TCCTCCATTTGATCTCGGTA+TGG | + | chr1_3:74776968-74776987 | None:intergenic | 45.0% | |
| TGCACTCCTCCATTTGATCT+CGG | + | chr1_3:74776973-74776992 | None:intergenic | 45.0% | |
| GTGCATCTTCTTGATCATGC+AGG | - | chr1_3:74776988-74777007 | Msa0140530:intron | 45.0% | |
| TGAGCACACTCTTGCTTATC+AGG | - | chr1_3:74777036-74777055 | Msa0140530:intron | 45.0% | |
| GATGAAGTCCTAGTTGAGCT+TGG | - | chr1_3:74777256-74777275 | Msa0140530:CDS | 45.0% | |
| !! | GTCTTTTAGCTGTTCCAGTG+AGG | - | chr1_3:74777296-74777315 | Msa0140530:CDS | 45.0% |
| TGACATGGAGTACAGGGAAT+TGG | - | chr1_3:74777444-74777463 | Msa0140530:CDS | 45.0% | |
| ! | AGGGAATTGGCTCTTGAATC+TGG | - | chr1_3:74777457-74777476 | Msa0140530:CDS | 45.0% |
| GCAAGATCCATGATGAAGGA+AGG | + | chr1_3:74777523-74777542 | None:intergenic | 45.0% | |
| CATCATGGATCTTGCAGATG+CGG | - | chr1_3:74777528-74777547 | Msa0140530:intron | 45.0% | |
| GGTGATAGAAGCTCTACCAT+CGG | - | chr1_3:74777549-74777568 | Msa0140530:intron | 45.0% | |
| !! | TATCTTCAGAGGTGCTGGTA+GGG | + | chr1_3:74777591-74777610 | None:intergenic | 45.0% |
| !! | ATATCTTCAGAGGTGCTGGT+AGG | + | chr1_3:74777592-74777611 | None:intergenic | 45.0% |
| ! | TACCAGCACCTCTGAAGATA+TGG | - | chr1_3:74777591-74777610 | Msa0140530:intron | 45.0% |
| ! | ATCCATATCTTCAGAGGTGC+TGG | + | chr1_3:74777596-74777615 | None:intergenic | 45.0% |
| GTTGGCGTGTACGTCAAAGA+TGG | + | chr1_3:74774060-74774079 | None:intergenic | 50.0% | |
| GGGTGAGGAAGGAAGGAATA+TGG | + | chr1_3:74774082-74774101 | None:intergenic | 50.0% | |
| ! | CGACGTTGGAAAGAGTTGGT+CGG | + | chr1_3:74774108-74774127 | None:intergenic | 50.0% |
| ACGACGACGTTGGAAAGAGT+TGG | + | chr1_3:74774112-74774131 | None:intergenic | 50.0% | |
| !! | AGGGATTGAGGGTATCGGTT+GGG | + | chr1_3:74774182-74774201 | None:intergenic | 50.0% |
| !! | AAGGGATTGAGGGTATCGGT+TGG | + | chr1_3:74774183-74774202 | None:intergenic | 50.0% |
| TGCAGCGATGAAGGGATTGA+GGG | + | chr1_3:74774193-74774212 | None:intergenic | 50.0% | |
| CGAGCCAGGACACAAAAACA+AGG | + | chr1_3:74774569-74774588 | None:intergenic | 50.0% | |
| TTATCTTGGGCAGCGTGAGT+AGG | + | chr1_3:74774685-74774704 | None:intergenic | 50.0% | |
| CACGCTGCCCAAGATAAAGT+TGG | - | chr1_3:74774688-74774707 | Msa0140530:CDS | 50.0% | |
| !! | GGTGTGTTGCTTCTCAACCT+AGG | - | chr1_3:74774709-74774728 | Msa0140530:CDS | 50.0% |
| !! | GTGTTGCTTCTCAACCTAGG+TGG | - | chr1_3:74774712-74774731 | Msa0140530:CDS | 50.0% |
| TAACAGTAGAACCTGGGGGT+TGG | - | chr1_3:74775261-74775280 | Msa0140530:intron | 50.0% | |
| AACAGTAGAACCTGGGGGTT+GGG | - | chr1_3:74775262-74775281 | Msa0140530:intron | 50.0% | |
| CTTCCTTGGATTTAGGAGCC+CGG | + | chr1_3:74775576-74775595 | None:intergenic | 50.0% | |
| !! | GTAGCACTGGCACTCTTGTT+TGG | - | chr1_3:74775717-74775736 | Msa0140530:intron | 50.0% |
| TCTATGTTGGGATGCGGTAC+TGG | - | chr1_3:74776086-74776105 | Msa0140530:intron | 50.0% | |
| GGATGGAATAACAAGGCTCG+TGG | - | chr1_3:74776326-74776345 | Msa0140530:CDS | 50.0% | |
| ACTGATGCTTGACCCAGTAG+TGG | + | chr1_3:74776382-74776401 | None:intergenic | 50.0% | |
| TGGGTCAAGCATCAGTGTTC+TGG | - | chr1_3:74776386-74776405 | Msa0140530:CDS | 50.0% | |
| !! | GTGTTCTGGAGCAAACGTTC+AGG | - | chr1_3:74776400-74776419 | Msa0140530:CDS | 50.0% |
| ! | GAGTTTTTCTGAGCCAAGGG+AGG | - | chr1_3:74776641-74776660 | Msa0140530:intron | 50.0% |
| ! | GGAATAATCGGTTCTTGGGC+CGG | + | chr1_3:74776713-74776732 | None:intergenic | 50.0% |
| CCCAAGAACCGATTATTCCG+AGG | - | chr1_3:74776714-74776733 | Msa0140530:intron | 50.0% | |
| ! | CCCTCGGAATAATCGGTTCT+TGG | + | chr1_3:74776718-74776737 | None:intergenic | 50.0% |
| TGGTATGCCACGGTTCAGAT+TGG | + | chr1_3:74776862-74776881 | None:intergenic | 50.0% | |
| GATTTGAGCTTGAGCAGAGC+AGG | - | chr1_3:74777100-74777119 | Msa0140530:intron | 50.0% | |
| ! | ATGGATTGCCAGAGTCGAGT+GGG | - | chr1_3:74777205-74777224 | Msa0140530:CDS | 50.0% |
| ! | CTTTCTGGCCAAGCTCAACT+AGG | + | chr1_3:74777267-74777286 | None:intergenic | 50.0% |
| CTAGTTGAGCTTGGCCAGAA+AGG | - | chr1_3:74777265-74777284 | Msa0140530:CDS | 50.0% | |
| TCTCACCCCTTCCTTCATCA+TGG | - | chr1_3:74777513-74777532 | Msa0140530:intron | 50.0% | |
| GCATTTATTGCTGCTGCCGA+TGG | + | chr1_3:74777568-74777587 | None:intergenic | 50.0% | |
| !! | ATCTTCAGAGGTGCTGGTAG+GGG | + | chr1_3:74777590-74777609 | None:intergenic | 50.0% |
| ! | TGGAAAGAGTTGGTCGGCGT+GGG | + | chr1_3:74774102-74774121 | None:intergenic | 55.0% |
| ! | TTGGAAAGAGTTGGTCGGCG+TGG | + | chr1_3:74774103-74774122 | None:intergenic | 55.0% |
| CTGCAGCGATGAAGGGATTG+AGG | + | chr1_3:74774194-74774213 | None:intergenic | 55.0% | |
| TGAACATCGTCCAGCGTCTC+TGG | + | chr1_3:74774739-74774758 | None:intergenic | 55.0% | |
| CTGGGTACATCTTGTGCCAG+TGG | - | chr1_3:74775395-74775414 | Msa0140530:intron | 55.0% | |
| ! | GGGCCGGATACCGAGTTTTA+AGG | + | chr1_3:74776697-74776716 | None:intergenic | 55.0% |
| !! | GATGGATTGCCAGAGTCGAG+TGG | - | chr1_3:74777204-74777223 | Msa0140530:CDS | 55.0% |
| CAAGAATTGGGCACGTGTCC+CGG | - | chr1_3:74777483-74777502 | Msa0140530:intron | 55.0% | |
| ATGGACGACGACGACGACGT+TGG | + | chr1_3:74774122-74774141 | None:intergenic | 60.0% | |
| CACAAACATGCCCAACCCCC+AGG | + | chr1_3:74775275-74775294 | None:intergenic | 60.0% | |
| GCTCCGGGCTCCTAAATCCA+AGG | - | chr1_3:74775570-74775589 | Msa0140530:CDS | 60.0% | |
| !! | GATGGTGGGATTGGACCCCT+CGG | + | chr1_3:74776734-74776753 | None:intergenic | 60.0% |
| AAGGGGTGAGACCAAGAGCC+GGG | + | chr1_3:74777504-74777523 | None:intergenic | 60.0% | |
| GAAGGGGTGAGACCAAGAGC+CGG | + | chr1_3:74777505-74777524 | None:intergenic | 60.0% | |
| TCGGCGTGGGTGAGGAAGGA+AGG | + | chr1_3:74774089-74774108 | None:intergenic | 65.0% | |
| TTGGTCGGCGTGGGTGAGGA+AGG | + | chr1_3:74774093-74774112 | None:intergenic | 65.0% | |
| ! | AGAGTTGGTCGGCGTGGGTG+AGG | + | chr1_3:74774097-74774116 | None:intergenic | 65.0% |
| CCAGCGTCTCTGGTCCACCT+AGG | + | chr1_3:74774729-74774748 | None:intergenic | 65.0% | |
| CCTAGGTGGACCAGAGACGC+TGG | - | chr1_3:74774726-74774745 | Msa0140530:CDS | 65.0% | |
| GTACAGGGCCCACTCGACTC+TGG | + | chr1_3:74777216-74777235 | None:intergenic | 65.0% | |
| GTCGAGTGGGCCCTGTACAG+TGG | - | chr1_3:74777218-74777237 | Msa0140530:CDS | 65.0% | |
| TGGGCACGTGTCCCGGCTCT+TGG | - | chr1_3:74777490-74777509 | Msa0140530:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 74774002 | 74777967 | 74774002 | ID=Msa0140530;Name=Msa0140530 |
| chr1_3 | mRNA | 74774002 | 74777967 | 74774002 | ID=Msa0140530-mRNA-1;Parent=Msa0140530;Name=Msa0140530-mRNA-1;_AED=0.14;_eAED=0.14;_QI=147|0.87|0.88|1|0.87|0.77|9|244|441 |
| chr1_3 | exon | 74774002 | 74774561 | 74774002 | ID=Msa0140530-mRNA-1:exon:26112;Parent=Msa0140530-mRNA-1 |
| chr1_3 | exon | 74774652 | 74774752 | 74774652 | ID=Msa0140530-mRNA-1:exon:26111;Parent=Msa0140530-mRNA-1 |
| chr1_3 | exon | 74774912 | 74775064 | 74774912 | ID=Msa0140530-mRNA-1:exon:26110;Parent=Msa0140530-mRNA-1 |
| chr1_3 | exon | 74775406 | 74775433 | 74775406 | ID=Msa0140530-mRNA-1:exon:26109;Parent=Msa0140530-mRNA-1 |
| chr1_3 | exon | 74775548 | 74775651 | 74775548 | ID=Msa0140530-mRNA-1:exon:26108;Parent=Msa0140530-mRNA-1 |
| chr1_3 | exon | 74775831 | 74775932 | 74775831 | ID=Msa0140530-mRNA-1:exon:26107;Parent=Msa0140530-mRNA-1 |
| chr1_3 | exon | 74776321 | 74776464 | 74776321 | ID=Msa0140530-mRNA-1:exon:26106;Parent=Msa0140530-mRNA-1 |
| chr1_3 | exon | 74777180 | 74777483 | 74777180 | ID=Msa0140530-mRNA-1:exon:26105;Parent=Msa0140530-mRNA-1 |
| chr1_3 | exon | 74777747 | 74777967 | 74777747 | ID=Msa0140530-mRNA-1:exon:26104;Parent=Msa0140530-mRNA-1 |
| chr1_3 | five_prime_UTR | 74777821 | 74777967 | 74777821 | ID=Msa0140530-mRNA-1:five_prime_utr;Parent=Msa0140530-mRNA-1 |
| chr1_3 | CDS | 74777747 | 74777820 | 74777747 | ID=Msa0140530-mRNA-1:cds;Parent=Msa0140530-mRNA-1 |
| chr1_3 | CDS | 74777180 | 74777483 | 74777180 | ID=Msa0140530-mRNA-1:cds;Parent=Msa0140530-mRNA-1 |
| chr1_3 | CDS | 74776321 | 74776464 | 74776321 | ID=Msa0140530-mRNA-1:cds;Parent=Msa0140530-mRNA-1 |
| chr1_3 | CDS | 74775831 | 74775932 | 74775831 | ID=Msa0140530-mRNA-1:cds;Parent=Msa0140530-mRNA-1 |
| chr1_3 | CDS | 74775548 | 74775651 | 74775548 | ID=Msa0140530-mRNA-1:cds;Parent=Msa0140530-mRNA-1 |
| chr1_3 | CDS | 74775406 | 74775433 | 74775406 | ID=Msa0140530-mRNA-1:cds;Parent=Msa0140530-mRNA-1 |
| chr1_3 | CDS | 74774912 | 74775064 | 74774912 | ID=Msa0140530-mRNA-1:cds;Parent=Msa0140530-mRNA-1 |
| chr1_3 | CDS | 74774652 | 74774752 | 74774652 | ID=Msa0140530-mRNA-1:cds;Parent=Msa0140530-mRNA-1 |
| chr1_3 | CDS | 74774246 | 74774561 | 74774246 | ID=Msa0140530-mRNA-1:cds;Parent=Msa0140530-mRNA-1 |
| chr1_3 | three_prime_UTR | 74774002 | 74774245 | 74774002 | ID=Msa0140530-mRNA-1:three_prime_utr;Parent=Msa0140530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
