AlfalfaGEDB | Msa0131490

M. sativa cultivar zhongmu-4 / Msa0131490

KEGG: K02138
GO: GO:0000274 GO:0000276 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016469 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0022626 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0042788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0045263 GO:0045265 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0070013 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990904
PFAM: PF05873.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131490	XP_003591975.1	97.740	177	4	0	1	177	1	177	3.75e-124	357

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131490	sp\|Q9FT52\|ATP5H_ARATH	80.952	168	32	0	1	168	1	168	3.24e-100	288

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131490	G7I9M9	97.740	177	4	0	1	177	1	177	1.79e-124	357

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0069440	Msa0131490	0.958457	2.249107e-116	-8.615850e-47
Msa0131490	Msa0131560	0.967328	3.976712e-127	-8.615850e-47
Msa0131490	Msa0177360	0.942502	6.412517e-102	-8.615850e-47
Msa0131490	Msa0581600	0.995151	1.719715e-213	-8.615850e-47
Msa0131490	Msa0660590	0.990769	3.093491e-184	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131490	MtrunA17_Chr1g0200191	97.740	177	4	0	1	177	1	177	3.45e-128	357

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131490	AT3G52300.1	80.952	168	32	0	1	168	1	168	3.29e-101	288
Msa0131490	AT3G52300.2	78.704	108	23	0	1	108	1	108	8.71e-62	187

Find 49 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTATAATATTCCCAGTCTA+TGG	0.167189	1_3:-62346862	None:intergenic
CAGTCAAGACACCCAATTTC+AGG	0.179551	1_3:+62349407	Msa0131490:three_prime_UTR
CTTACCAGTGCATCAAATTT+AGG	0.208576	1_3:-62348851	None:intergenic
GTATACATTTGTTCTGATTC+TGG	0.223703	1_3:+62349478	Msa0131490:three_prime_UTR
ATTTAGAAACTGTTGTCTTA+TGG	0.283362	1_3:+62349381	Msa0131490:three_prime_UTR
AGGAGATTAGGAACGATAAC+TGG	0.292837	1_3:+62349194	Msa0131490:CDS
GCTGAAGTTGGTTGAGCTTA+AGG	0.315735	1_3:+62348951	Msa0131490:intron
GTCCCAATCGATCTTCTTCC+CGG	0.344356	1_3:-62346003	None:intergenic
AATAAATTGTTGTGTTTGTC+TGG	0.357169	1_3:+62349452	Msa0131490:three_prime_UTR
TCTGAAAGAATCTGAACGTT+TGG	0.374930	1_3:+62348990	Msa0131490:CDS
AAAAGGAATTGGCACTCGTT+TGG	0.433018	1_3:+62346884	Msa0131490:CDS
AGCAATTTGATGAGGAGATT+AGG	0.438102	1_3:+62349182	Msa0131490:CDS
TCAAATTGCTTCTTCAGCTC+AGG	0.438466	1_3:-62349169	None:intergenic
AGTTACTGTGTCAACAAACT+TGG	0.447924	1_3:-62348816	None:intergenic
GACTGGGAATATTATAGAAA+AGG	0.455154	1_3:+62346867	Msa0131490:CDS
GAATATTATAGAAAAGGAAT+TGG	0.458956	1_3:+62346873	Msa0131490:CDS
TAAGCCTAAATTTGATGCAC+TGG	0.467869	1_3:+62348847	Msa0131490:CDS
AGGAGCCTGAGCCCATAGAC+TGG	0.471648	1_3:+62346850	Msa0131490:intron
AGAATCTGAACGTTTGGAAA+AGG	0.472141	1_3:+62348996	Msa0131490:CDS
CTATAATATTCCCAGTCTAT+GGG	0.473165	1_3:-62346861	None:intergenic
ATTTGTTCTGATTCTGGCAA+TGG	0.477285	1_3:+62349484	Msa0131490:three_prime_UTR
AAATTCACGACGAGCTTCAT+CGG	0.482178	1_3:-62346048	None:intergenic
ACAGATGTTGCATTCAAAGC+CGG	0.489390	1_3:+62345984	Msa0131490:CDS
GCAAGGAAAACATCAACTTC+AGG	0.493258	1_3:-62349248	None:intergenic
TCAAATTTAGGCTTATATTG+AGG	0.499518	1_3:-62348839	None:intergenic
AGGAATTGGCACTCGTTTGG+TGG	0.500877	1_3:+62346887	Msa0131490:CDS
CTTCTTCAGCTCAGGATGCT+CGG	0.501457	1_3:-62349161	None:intergenic
CAGATGTTGCATTCAAAGCC+GGG	0.515624	1_3:+62345985	Msa0131490:CDS
TATTCCCAGTCTATGGGCTC+AGG	0.528775	1_3:-62346855	None:intergenic
AAGCCGGGAAGAAGATCGAT+TGG	0.530458	1_3:+62346000	Msa0131490:CDS
GGAAGAAGATCGATTGGGAC+GGG	0.534761	1_3:+62346006	Msa0131490:CDS
AAAGTACTCATCTGCTGTCA+TGG	0.536378	1_3:-62349137	None:intergenic
GGAGATTAGGAACGATAACT+GGG	0.553647	1_3:+62349195	Msa0131490:CDS
GTTACTGTGTCAACAAACTT+GGG	0.562398	1_3:-62348815	None:intergenic
AGCCGGGAAGAAGATCGATT+GGG	0.567684	1_3:+62346001	Msa0131490:CDS
GGAGCCTGAGCCCATAGACT+GGG	0.568751	1_3:+62346851	Msa0131490:intron
GAAGATCGATTGGGACGGGA+TGG	0.577380	1_3:+62346010	Msa0131490:CDS
TGCTAATGTACAGTCGCTGA+AGG	0.578326	1_3:+62349023	Msa0131490:CDS
GGTTGAGCTTAAGGAAGCAG+AGG	0.581516	1_3:+62348960	Msa0131490:CDS
CTCTGGTAACGATAGTGTCA+AGG	0.588551	1_3:+62345859	None:intergenic
TATTATTTATTAAACCAGCA+AGG	0.594786	1_3:-62349265	None:intergenic
ACGATAGTGTCAAGGTGCGA+AGG	0.595692	1_3:+62345867	None:intergenic
ACTCGAAACAAAGTTCAGCC+AGG	0.598938	1_3:+62346109	Msa0131490:CDS
AAAGCGAAAGCGAAAATGAG+CGG	0.621372	1_3:+62345945	Msa0131490:exon
GGGAAGAAGATCGATTGGGA+CGG	0.627371	1_3:+62346005	Msa0131490:CDS
GCTGAAGAAGCAATTTGATG+AGG	0.630857	1_3:+62349174	Msa0131490:CDS
TTACTGTGTCAACAAACTTG+GGG	0.648687	1_3:-62348814	None:intergenic
AAACTATCAAAGGTCACACA+AGG	0.675809	1_3:+62349545	Msa0131490:three_prime_UTR
GAGATTAGGAACGATAACTG+GGG	0.757484	1_3:+62349196	Msa0131490:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTAAAATTATTTTTTTTAT+TGG	+	chr1_3:62347597-62347616	Msa0131490:intron	0.0%
!!	TAAAAAAATACTAATATAAG+GGG	-	chr1_3:62346964-62346983	None:intergenic	10.0%
!!	TAAAAATGAGAAATTAATAT+AGG	+	chr1_3:62347487-62347506	Msa0131490:intron	10.0%
!!!	TTTTTTTAATCTGTATTTAA+TGG	+	chr1_3:62347769-62347788	Msa0131490:intron	10.0%
!!!	ATATATTCTAATGTAAATTT+TGG	-	chr1_3:62348339-62348358	None:intergenic	10.0%
!!!	TTTTTAGTGTTTTTATTATT+AGG	-	chr1_3:62349514-62349533	None:intergenic	10.0%
!!	AATACATAATCTATTTGTAT+AGG	-	chr1_3:62346568-62346587	None:intergenic	15.0%
!!!	TAATTTGATAACTACATAAT+TGG	-	chr1_3:62346748-62346767	None:intergenic	15.0%
!!!	AGTATTTTTTTATTTGTCAA+TGG	+	chr1_3:62346972-62346991	Msa0131490:intron	15.0%
!!!	TACTGTAAATATTTGTATTT+TGG	-	chr1_3:62347647-62347666	None:intergenic	15.0%
!!!	AATTATTTCTCAAATTGAAA+AGG	+	chr1_3:62348395-62348414	Msa0131490:intron	15.0%
!!!	TACATTATTTTTTTGTAACT+TGG	+	chr1_3:62349290-62349309	Msa0131490:three_prime_UTR	15.0%
!!	AATAGTTAAAAAACTATCAA+AGG	+	chr1_3:62349535-62349554	Msa0131490:three_prime_UTR	15.0%
!!	TGTAGTTATCAAATTATTAC+CGG	+	chr1_3:62346752-62346771	Msa0131490:intron	20.0%
!!	GAATATTATAGAAAAGGAAT+TGG	+	chr1_3:62346873-62346892	Msa0131490:CDS	20.0%
!!	AATAACTTGACAACAAATAT+TGG	-	chr1_3:62347576-62347595	None:intergenic	20.0%
!!	TCATAATTATATAACTGAAC+TGG	-	chr1_3:62348085-62348104	None:intergenic	20.0%
!!!	GTTTTATAGTTGTTTTTTTC+AGG	+	chr1_3:62348172-62348191	Msa0131490:intron	20.0%
!!!	GTTAAATTTTAACATGCATT+AGG	-	chr1_3:62348315-62348334	None:intergenic	20.0%
!!	AGTTATTGCCTAAATATTTA+TGG	+	chr1_3:62348666-62348685	Msa0131490:intron	20.0%
!!	AATGGTATGTAAAATTTGAA+TGG	-	chr1_3:62348751-62348770	None:intergenic	20.0%
!!	AACATCAAAAGTTGAATTAA+TGG	-	chr1_3:62348769-62348788	None:intergenic	20.0%
!!!	TTCTCAGTTTTATGTAATAT+TGG	+	chr1_3:62349067-62349086	Msa0131490:intron	20.0%
!!	TATTATTTATTAAACCAGCA+AGG	-	chr1_3:62349268-62349287	None:intergenic	20.0%
!!!	AAAAACATTTTCCTGAAATT+GGG	-	chr1_3:62349421-62349440	None:intergenic	20.0%
!!	CTTCATCATCAATTTTGAAT+TGG	+	chr1_3:62346295-62346314	Msa0131490:intron	25.0%
!!!	ATCATGTTTTAGTGCATTTT+CGG	+	chr1_3:62346327-62346346	Msa0131490:intron	25.0%
!	GTATTCAAAACATGATGAAA+AGG	-	chr1_3:62346538-62346557	None:intergenic	25.0%
!	TATCATTTCTTATTAATCGC+AGG	+	chr1_3:62346830-62346849	Msa0131490:intron	25.0%
!	AGGATATTGATAAATTCAAC+TGG	+	chr1_3:62347097-62347116	Msa0131490:intron	25.0%
!!!	AGTTCAGTTTTTTTAAGGAT+CGG	-	chr1_3:62347259-62347278	None:intergenic	25.0%
!!!	CAAACAGTTCAGTTTTTTTA+AGG	-	chr1_3:62347264-62347283	None:intergenic	25.0%
!!	AAAAAGATAATCTTGATAGC+TGG	-	chr1_3:62347937-62347956	None:intergenic	25.0%
!!	AGCTATCAAGATTATCTTTT+TGG	+	chr1_3:62347936-62347955	Msa0131490:intron	25.0%
!	AATTATGAACCATAGTTTAC+TGG	+	chr1_3:62348097-62348116	Msa0131490:intron	25.0%
!	ATGTCTATCAATTTCAGATA+GGG	-	chr1_3:62348245-62348264	None:intergenic	25.0%
!	AATGTCTATCAATTTCAGAT+AGG	-	chr1_3:62348246-62348265	None:intergenic	25.0%
!	CATTAGAATATATGAAACTG+TGG	+	chr1_3:62348346-62348365	Msa0131490:intron	25.0%
!	AAGTACATAAGAAAAGAAAC+TGG	+	chr1_3:62348418-62348437	Msa0131490:intron	25.0%
!	ATTGAATGAGACAAAGTTAT+AGG	-	chr1_3:62348464-62348483	None:intergenic	25.0%
!	TAAAACCTGGAAATTGTATA+TGG	+	chr1_3:62348514-62348533	Msa0131490:intron	25.0%
!	GACTACATCCATAAATATTT+AGG	-	chr1_3:62348677-62348696	None:intergenic	25.0%
!	TCAAATTTAGGCTTATATTG+AGG	-	chr1_3:62348842-62348861	None:intergenic	25.0%
!!	TTTTCTGTGAAAACAAACAA+TGG	-	chr1_3:62349108-62349127	None:intergenic	25.0%
!!!	ATTGTTTGTTTTCACAGAAA+AGG	+	chr1_3:62349107-62349126	Msa0131490:intron	25.0%
!	ATTTAGAAACTGTTGTCTTA+TGG	+	chr1_3:62349381-62349400	Msa0131490:three_prime_UTR	25.0%
!!	CAAAAACATTTTCCTGAAAT+TGG	-	chr1_3:62349422-62349441	None:intergenic	25.0%
!!!	ATTTCAGGAAAATGTTTTTG+TGG	+	chr1_3:62349422-62349441	Msa0131490:three_prime_UTR	25.0%
!	AATAAATTGTTGTGTTTGTC+TGG	+	chr1_3:62349452-62349471	Msa0131490:three_prime_UTR	25.0%
	AGCATCTAAGAACAAAATGA+AGG	-	chr1_3:62346200-62346219	None:intergenic	30.0%
	TTGTACCTTTGTAATGATGT+TGG	+	chr1_3:62346431-62346450	Msa0131490:intron	30.0%
	TGTACCTTTGTAATGATGTT+GGG	+	chr1_3:62346432-62346451	Msa0131490:intron	30.0%
	AGATTATGTATTCAGTTACG+AGG	+	chr1_3:62346576-62346595	Msa0131490:intron	30.0%
	CTATAATATTCCCAGTCTAT+GGG	-	chr1_3:62346864-62346883	None:intergenic	30.0%
	TCTATAATATTCCCAGTCTA+TGG	-	chr1_3:62346865-62346884	None:intergenic	30.0%
	GACTGGGAATATTATAGAAA+AGG	+	chr1_3:62346867-62346886	Msa0131490:CDS	30.0%
	GTACCATTGAATACAAGAAT+CGG	-	chr1_3:62347125-62347144	None:intergenic	30.0%
!	TGGTACCATATTCTTTTCAT+AGG	+	chr1_3:62347139-62347158	Msa0131490:intron	30.0%
!	GGTACCATATTCTTTTCATA+GGG	+	chr1_3:62347140-62347159	Msa0131490:intron	30.0%
	TCTTCCCTATGAAAAGAATA+TGG	-	chr1_3:62347147-62347166	None:intergenic	30.0%
!!!	TTCAGTTTTTTTAAGGATCG+GGG	-	chr1_3:62347257-62347276	None:intergenic	30.0%
!!!	GTTCAGTTTTTTTAAGGATC+GGG	-	chr1_3:62347258-62347277	None:intergenic	30.0%
!!	ACTGAACTACTTTTGAAGAA+TGG	-	chr1_3:62347337-62347356	None:intergenic	30.0%
!	AAAGCAGTTTTACAAACAGT+TGG	+	chr1_3:62347528-62347547	Msa0131490:intron	30.0%
	CGAATGAGACAAAAAGATAT+TGG	-	chr1_3:62347976-62347995	None:intergenic	30.0%
	TAAGCAAAACTGCAACTAAT+GGG	-	chr1_3:62348057-62348076	None:intergenic	30.0%
	AATTATATAACTGAACTGGC+TGG	-	chr1_3:62348081-62348100	None:intergenic	30.0%
	CTGATACTTAATAGCTTGAA+CGG	-	chr1_3:62348143-62348162	None:intergenic	30.0%
!!!	TTGTTTTTTTCAGGTCAGTT+AGG	+	chr1_3:62348181-62348200	Msa0131490:intron	30.0%
	TGTCTATCAATTTCAGATAG+GGG	-	chr1_3:62348244-62348263	None:intergenic	30.0%
!	ATATATGAAACTGTGGATTG+TGG	+	chr1_3:62348353-62348372	Msa0131490:intron	30.0%
!	TGTTATTTGACCTATTCACA+TGG	+	chr1_3:62348488-62348507	Msa0131490:intron	30.0%
	GTTATTTGACCTATTCACAT+GGG	+	chr1_3:62348489-62348508	Msa0131490:intron	30.0%
	TGATACCATATACAATTTCC+AGG	-	chr1_3:62348522-62348541	None:intergenic	30.0%
	ATGCACGATTAATAAATGCA+AGG	-	chr1_3:62348576-62348595	None:intergenic	30.0%
!	TCGTGCATTGAATTGATTTA+AGG	+	chr1_3:62348588-62348607	Msa0131490:intron	30.0%
	GGTATGTAAAATTTGAATGG+CGG	-	chr1_3:62348748-62348767	None:intergenic	30.0%
	CTTGATTGATAGAGAAAAGT+TGG	-	chr1_3:62348898-62348917	None:intergenic	30.0%
!	TGGTTTTTCTCCAGTTTAAA+AGG	+	chr1_3:62349310-62349329	Msa0131490:three_prime_UTR	30.0%
!	CTGCAGTTGTCAAAATTTTA+TGG	+	chr1_3:62349345-62349364	Msa0131490:three_prime_UTR	30.0%
	GTATACATTTGTTCTGATTC+TGG	+	chr1_3:62349478-62349497	Msa0131490:three_prime_UTR	30.0%
	TGTGAAGGAATTTATCTACC+TGG	-	chr1_3:62346130-62346149	None:intergenic	35.0%
	GAAATTAGAGAGATCTGTGA+AGG	-	chr1_3:62346145-62346164	None:intergenic	35.0%
!!	TGCTAGATCGATTGACTTTT+AGG	+	chr1_3:62346216-62346235	Msa0131490:intron	35.0%
	GTACCTTTGTAATGATGTTG+GGG	+	chr1_3:62346433-62346452	Msa0131490:intron	35.0%
	TTTCCCCAACATCATTACAA+AGG	-	chr1_3:62346439-62346458	None:intergenic	35.0%
	TTGTAATGATGTTGGGGAAA+TGG	+	chr1_3:62346439-62346458	Msa0131490:intron	35.0%
	ATACCAACACTTCTGTTTGA+AGG	+	chr1_3:62346663-62346682	Msa0131490:intron	35.0%
!!	TTAGAGCATGACTTGTTTGA+TGG	+	chr1_3:62347011-62347030	Msa0131490:intron	35.0%
	TCATGCACTTTCTCTTCTTT+AGG	+	chr1_3:62347060-62347079	Msa0131490:intron	35.0%
	CATGCACTTTCTCTTCTTTA+GGG	+	chr1_3:62347061-62347080	Msa0131490:intron	35.0%
	ATGCACTTTCTCTTCTTTAG+GGG	+	chr1_3:62347062-62347081	Msa0131490:intron	35.0%
	GATCCGATTCTTGTATTCAA+TGG	+	chr1_3:62347119-62347138	Msa0131490:intron	35.0%
	TAATTCACAAAAGCCATCCT+CGG	+	chr1_3:62347175-62347194	Msa0131490:intron	35.0%
	CCAAAAAAAACTGAACTGTC+CGG	+	chr1_3:62347219-62347238	Msa0131490:intron	35.0%
	TGAGATGTCAATTGTGCTAA+GGG	-	chr1_3:62347462-62347481	None:intergenic	35.0%
	ATGAGATGTCAATTGTGCTA+AGG	-	chr1_3:62347463-62347482	None:intergenic	35.0%
	CTAAGCAAAACTGCAACTAA+TGG	-	chr1_3:62348058-62348077	None:intergenic	35.0%
	TACTTTGGTCCAGTAAACTA+TGG	-	chr1_3:62348109-62348128	None:intergenic	35.0%
	GTTATAGGAAACGTTGTCAT+GGG	-	chr1_3:62348449-62348468	None:intergenic	35.0%
	AGTTATAGGAAACGTTGTCA+TGG	-	chr1_3:62348450-62348469	None:intergenic	35.0%
!!!	GGTTTTATTCCCATGTGAAT+AGG	-	chr1_3:62348501-62348520	None:intergenic	35.0%
	ATTCACATGGGAATAAAACC+TGG	+	chr1_3:62348501-62348520	Msa0131490:intron	35.0%
	ATAAATGCAAGGATGAACAC+TGG	-	chr1_3:62348565-62348584	None:intergenic	35.0%
!	GTAAAATTTGAATGGCGGAA+TGG	-	chr1_3:62348743-62348762	None:intergenic	35.0%
	TGATGTTATGCTTCTTCTGT+AGG	+	chr1_3:62348782-62348801	Msa0131490:intron	35.0%
	TTACTGTGTCAACAAACTTG+GGG	-	chr1_3:62348817-62348836	None:intergenic	35.0%
	GTTACTGTGTCAACAAACTT+GGG	-	chr1_3:62348818-62348837	None:intergenic	35.0%
	AGTTACTGTGTCAACAAACT+TGG	-	chr1_3:62348819-62348838	None:intergenic	35.0%
	TAAGCCTAAATTTGATGCAC+TGG	+	chr1_3:62348847-62348866	Msa0131490:CDS	35.0%
	CTTACCAGTGCATCAAATTT+AGG	-	chr1_3:62348854-62348873	None:intergenic	35.0%
!	ATGTGTTTTCTTGCTGAAGT+TGG	+	chr1_3:62348939-62348958	Msa0131490:intron	35.0%
	TCTGAAAGAATCTGAACGTT+TGG	+	chr1_3:62348990-62349009	Msa0131490:CDS	35.0%
	AGAATCTGAACGTTTGGAAA+AGG	+	chr1_3:62348996-62349015	Msa0131490:CDS	35.0%
	AGGTAATAGAAATCACCACA+TGG	+	chr1_3:62349043-62349062	Msa0131490:intron	35.0%
	CATAAAACTGAGAAACCATG+TGG	-	chr1_3:62349061-62349080	None:intergenic	35.0%
	AGCAATTTGATGAGGAGATT+AGG	+	chr1_3:62349182-62349201	Msa0131490:CDS	35.0%
!	ATGTGGAGAACCTTTTAAAC+TGG	-	chr1_3:62349323-62349342	None:intergenic	35.0%
!	TTTTGACAACTGCAGAAATG+TGG	-	chr1_3:62349340-62349359	None:intergenic	35.0%
!!	TCAGGAAAATGTTTTTGTGG+CGG	+	chr1_3:62349425-62349444	Msa0131490:three_prime_UTR	35.0%
	ATTTGTTCTGATTCTGGCAA+TGG	+	chr1_3:62349484-62349503	Msa0131490:three_prime_UTR	35.0%
	AAAGCGAAAGCGAAAATGAG+CGG	+	chr1_3:62345945-62345964	Msa0131490:exon	40.0%
	ACAGATGTTGCATTCAAAGC+CGG	+	chr1_3:62345984-62346003	Msa0131490:CDS	40.0%
	AAATTCACGACGAGCTTCAT+CGG	-	chr1_3:62346051-62346070	None:intergenic	40.0%
	TATTCAGTTACGAGGCTTAG+AGG	+	chr1_3:62346584-62346603	Msa0131490:intron	40.0%
!	AAGCCTTCAAACAGAAGTGT+TGG	-	chr1_3:62346669-62346688	None:intergenic	40.0%
	TCAGACACACTAACAAGTGT+CGG	-	chr1_3:62346701-62346720	None:intergenic	40.0%
	AAAAGGAATTGGCACTCGTT+TGG	+	chr1_3:62346884-62346903	Msa0131490:CDS	40.0%
!	TCTCTTCTTTAGGGGTAAAG+TGG	+	chr1_3:62347070-62347089	Msa0131490:intron	40.0%
	TTTAGGGGTAAAGTGGTAGA+AGG	+	chr1_3:62347077-62347096	Msa0131490:intron	40.0%
	AAAAGCCATCCTCGGAAATT+AGG	+	chr1_3:62347183-62347202	Msa0131490:intron	40.0%
	AAAGCCATCCTCGGAAATTA+GGG	+	chr1_3:62347184-62347203	Msa0131490:intron	40.0%
	ATGAACAACCCTAATTTCCG+AGG	-	chr1_3:62347195-62347214	None:intergenic	40.0%
!!!	CCGGACAGTTCAGTTTTTTT+TGG	-	chr1_3:62347222-62347241	None:intergenic	40.0%
	TCATTCGCAAAACGTGATGA+TGG	+	chr1_3:62347989-62348008	Msa0131490:intron	40.0%
	CATTCGCAAAACGTGATGAT+GGG	+	chr1_3:62347990-62348009	Msa0131490:intron	40.0%
!	ATTCGCAAAACGTGATGATG+GGG	+	chr1_3:62347991-62348010	Msa0131490:intron	40.0%
	ACTGGACCAAAGTACAAGTT+CGG	+	chr1_3:62348115-62348134	Msa0131490:intron	40.0%
!!	AATTTCAGATAGGGGTGTTC+GGG	-	chr1_3:62348236-62348255	None:intergenic	40.0%
!!	CAATTTCAGATAGGGGTGTT+CGG	-	chr1_3:62348237-62348256	None:intergenic	40.0%
	AGACATTCTTTCGTTGTGTC+TGG	+	chr1_3:62348259-62348278	Msa0131490:intron	40.0%
	CATACATAGTGAGAGAGATG+AGG	+	chr1_3:62348705-62348724	Msa0131490:intron	40.0%
!	AAAGTACTCATCTGCTGTCA+TGG	-	chr1_3:62349140-62349159	None:intergenic	40.0%
	TCAAATTGCTTCTTCAGCTC+AGG	-	chr1_3:62349172-62349191	None:intergenic	40.0%
	GCTGAAGAAGCAATTTGATG+AGG	+	chr1_3:62349174-62349193	Msa0131490:CDS	40.0%
	AGGAGATTAGGAACGATAAC+TGG	+	chr1_3:62349194-62349213	Msa0131490:CDS	40.0%
	GGAGATTAGGAACGATAACT+GGG	+	chr1_3:62349195-62349214	Msa0131490:CDS	40.0%
	GAGATTAGGAACGATAACTG+GGG	+	chr1_3:62349196-62349215	Msa0131490:CDS	40.0%
	GCAAGGAAAACATCAACTTC+AGG	-	chr1_3:62349251-62349270	None:intergenic	40.0%
!!!	GAAGTTGATGTTTTCCTTGC+TGG	+	chr1_3:62349251-62349270	Msa0131490:exon	40.0%
	CAGATGTTGCATTCAAAGCC+GGG	+	chr1_3:62345985-62346004	Msa0131490:CDS	45.0%
	ACTCGAAACAAAGTTCAGCC+AGG	+	chr1_3:62346109-62346128	Msa0131490:CDS	45.0%
!!	CACTAACAAGTGTCGGACAT+CGG	-	chr1_3:62346694-62346713	None:intergenic	45.0%
!!	ATTACCGGTGTTGATGTGTC+AGG	+	chr1_3:62346767-62346786	Msa0131490:intron	45.0%
	ACAACCCTAATTTCCGAGGA+TGG	-	chr1_3:62347191-62347210	None:intergenic	45.0%
!!	TTTTAAGGATCGGGGCAGTT+GGG	-	chr1_3:62347249-62347268	None:intergenic	45.0%
!!	TTTTTAAGGATCGGGGCAGT+TGG	-	chr1_3:62347250-62347269	None:intergenic	45.0%
!	TTTTGTGCGAACTGAACTGC+TGG	+	chr1_3:62347286-62347305	Msa0131490:intron	45.0%
	AGAGAGAGCTGACAACAGTT+TGG	-	chr1_3:62347373-62347392	None:intergenic	45.0%
	ACGGATCCGAACTTGTACTT+TGG	-	chr1_3:62348124-62348143	None:intergenic	45.0%
!!	ATTTCAGATAGGGGTGTTCG+GGG	-	chr1_3:62348235-62348254	None:intergenic	45.0%
!	GCTGAAGTTGGTTGAGCTTA+AGG	+	chr1_3:62348951-62348970	Msa0131490:intron	45.0%
	TGCTAATGTACAGTCGCTGA+AGG	+	chr1_3:62349023-62349042	Msa0131490:CDS	45.0%
	CAGTCAAGACACCCAATTTC+AGG	+	chr1_3:62349407-62349426	Msa0131490:three_prime_UTR	45.0%
!!	ATAAAAAAATACTAATATAA+GGG	-	chr1_3:62346965-62346984	None:intergenic	5.0%
!!	AATAAAAAAATACTAATATA+AGG	-	chr1_3:62346966-62346985	None:intergenic	5.0%
	AAGCCGGGAAGAAGATCGAT+TGG	+	chr1_3:62346000-62346019	Msa0131490:CDS	50.0%
	AGCCGGGAAGAAGATCGATT+GGG	+	chr1_3:62346001-62346020	Msa0131490:CDS	50.0%
	GTCCCAATCGATCTTCTTCC+CGG	-	chr1_3:62346006-62346025	None:intergenic	50.0%
	GGGAAGAAGATCGATTGGGA+CGG	+	chr1_3:62346005-62346024	Msa0131490:CDS	50.0%
	GGAAGAAGATCGATTGGGAC+GGG	+	chr1_3:62346006-62346025	Msa0131490:CDS	50.0%
	GACACCTGACACATCAACAC+CGG	-	chr1_3:62346774-62346793	None:intergenic	50.0%
	TATTCCCAGTCTATGGGCTC+AGG	-	chr1_3:62346858-62346877	None:intergenic	50.0%
	AGGAATTGGCACTCGTTTGG+TGG	+	chr1_3:62346887-62346906	Msa0131490:CDS	50.0%
!!	AAACGTGATGATGGGGTGGA+AGG	+	chr1_3:62347998-62348017	Msa0131490:intron	50.0%
	GGTTGAGCTTAAGGAAGCAG+AGG	+	chr1_3:62348960-62348979	Msa0131490:CDS	50.0%
	CTTCTTCAGCTCAGGATGCT+CGG	-	chr1_3:62349164-62349183	None:intergenic	50.0%
	GAAGATCGATTGGGACGGGA+TGG	+	chr1_3:62346010-62346029	Msa0131490:CDS	55.0%
!!	CGCAAAACGTGATGATGGGG+TGG	+	chr1_3:62347994-62348013	Msa0131490:intron	55.0%
!!	AGATAGGGGTGTTCGGGGTT+GGG	-	chr1_3:62348230-62348249	None:intergenic	55.0%
	AGGAGCCTGAGCCCATAGAC+TGG	+	chr1_3:62346850-62346869	Msa0131490:intron	60.0%
	GGAGCCTGAGCCCATAGACT+GGG	+	chr1_3:62346851-62346870	Msa0131490:intron	60.0%
	ATCGGGGCAGTTGGGTTCTC+CGG	-	chr1_3:62347241-62347260	None:intergenic	60.0%
!!	CAGATAGGGGTGTTCGGGGT+TGG	-	chr1_3:62348231-62348250	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	62345871	62349566	62345871	ID=Msa0131490;Name=Msa0131490
chr1_3	mRNA	62345871	62349566	62345871	ID=Msa0131490-mRNA-1;Parent=Msa0131490;Name=Msa0131490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89\|1\|1\|1\|1\|1\|5\|314\|177
chr1_3	exon	62345871	62346130	62345871	ID=Msa0131490-mRNA-1:exon:20735;Parent=Msa0131490-mRNA-1
chr1_3	exon	62346852	62346933	62346852	ID=Msa0131490-mRNA-1:exon:20736;Parent=Msa0131490-mRNA-1
chr1_3	exon	62348804	62348868	62348804	ID=Msa0131490-mRNA-1:exon:20737;Parent=Msa0131490-mRNA-1
chr1_3	exon	62348958	62349044	62348958	ID=Msa0131490-mRNA-1:exon:20738;Parent=Msa0131490-mRNA-1
chr1_3	exon	62349124	62349566	62349124	ID=Msa0131490-mRNA-1:exon:20739;Parent=Msa0131490-mRNA-1
chr1_3	five_prime_UTR	62345871	62345959	62345871	ID=Msa0131490-mRNA-1:five_prime_utr;Parent=Msa0131490-mRNA-1
chr1_3	CDS	62345960	62346130	62345960	ID=Msa0131490-mRNA-1:cds;Parent=Msa0131490-mRNA-1
chr1_3	CDS	62346852	62346933	62346852	ID=Msa0131490-mRNA-1:cds;Parent=Msa0131490-mRNA-1
chr1_3	CDS	62348804	62348868	62348804	ID=Msa0131490-mRNA-1:cds;Parent=Msa0131490-mRNA-1
chr1_3	CDS	62348958	62349044	62348958	ID=Msa0131490-mRNA-1:cds;Parent=Msa0131490-mRNA-1
chr1_3	CDS	62349124	62349252	62349124	ID=Msa0131490-mRNA-1:cds;Parent=Msa0131490-mRNA-1
chr1_3	three_prime_UTR	62349253	62349566	62349253	ID=Msa0131490-mRNA-1:three_prime_utr;Parent=Msa0131490-mRNA-1

Gene Sequence

>Msa0131490

ATGAGCGGAACAGTGAAAAAAGTTACAGATGTTGCATTCAAAGCCGGGAAGAAGATCGATTGGGACGGGATGGCTAAGCTTCTCGTCACCGATGAAGCTCGTCGTGAATTTTTCAATCTTCGTCGCGCTTTCGACGAAGTTAACACTCAACTCGAAACAAAGTTCAGCCAGGAGCCTGAGCCCATAGACTGGGAATATTATAGAAAAGGAATTGGCACTCGTTTGGTGGATATGTACAAGCAGCATTATGAGAGCATTGAGATCCCCAAGTTTGTTGACACAGTAACTCCTCAATATAAGCCTAAATTTGATGCACTGTTGGTTGAGCTTAAGGAAGCAGAGGAGAAATCTCTGAAAGAATCTGAACGTTTGGAAAAGGAAATTGCTAATGTACAGTCGCTGAAGAAAAGGATTTCTACCATGACAGCAGATGAGTACTTTGCCGAGCATCCTGAGCTGAAGAAGCAATTTGATGAGGAGATTAGGAACGATAACTGGGGCTATTCACACTACAAAACTGAGCAAAACGCCTGA

Protein sequence

>Msa0131490

MSGTVKKVTDVAFKAGKKIDWDGMAKLLVTDEARREFFNLRRAFDEVNTQLETKFSQEPEPIDWEYYRKGIGTRLVDMYKQHYESIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKESERLEKEIANVQSLKKRISTMTADEYFAEHPELKKQFDEEIRNDNWGYSHYKTEQNA*