Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069440 | XP_003591975.1 | 97.740 | 177 | 4 | 0 | 1 | 177 | 1 | 177 | 3.75e-124 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069440 | sp|Q9FT52|ATP5H_ARATH | 80.952 | 168 | 32 | 0 | 1 | 168 | 1 | 168 | 3.24e-100 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069440 | G7I9M9 | 97.740 | 177 | 4 | 0 | 1 | 177 | 1 | 177 | 1.79e-124 | 357 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037410 | Msa0069440 | 0.813796 | 2.135413e-51 | -8.615850e-47 |
| Msa0069440 | Msa0127530 | 0.807481 | 4.950339e-50 | -8.615850e-47 |
| Msa0069440 | Msa0131490 | 0.958457 | 2.249107e-116 | -8.615850e-47 |
| Msa0069440 | Msa0131560 | 0.994598 | 1.393467e-208 | -8.615850e-47 |
| Msa0069440 | Msa0177360 | 0.973819 | 4.435610e-137 | -8.615850e-47 |
| Msa0069440 | Msa0221030 | 0.816539 | 5.250246e-52 | -8.615850e-47 |
| Msa0069440 | Msa0359600 | 0.803855 | 2.856706e-49 | -8.615850e-47 |
| Msa0069440 | Msa0568470 | 0.817239 | 3.655945e-52 | -8.615850e-47 |
| Msa0069440 | Msa0581600 | 0.969683 | 1.745005e-130 | -8.615850e-47 |
| Msa0069440 | Msa0604960 | 0.843000 | 1.833634e-58 | -8.615850e-47 |
| Msa0069440 | Msa0659030 | 0.864493 | 1.169168e-64 | -8.615850e-47 |
| Msa0069440 | Msa0660590 | 0.977782 | 1.790172e-144 | -8.615850e-47 |
| Msa0069440 | Msa0705000 | 0.871314 | 7.512219e-67 | -8.615850e-47 |
| Msa0069440 | Msa0705040 | 0.875280 | 3.490276e-68 | -8.615850e-47 |
| Msa0069440 | Msa0717380 | 0.805862 | 1.087386e-49 | -8.615850e-47 |
| Msa0069440 | Msa0945480 | 0.803575 | 3.265144e-49 | -8.615850e-47 |
| Msa0069440 | Msa1115590 | 0.802434 | 5.621682e-49 | -8.615850e-47 |
| Msa0069440 | Msa1125500 | 0.819465 | 1.145252e-52 | -8.615850e-47 |
| Msa0069440 | Msa1125580 | 0.838684 | 2.484881e-57 | -8.615850e-47 |
| Msa0069440 | Msa1227690 | 0.804647 | 1.953973e-49 | -8.615850e-47 |
| Msa0069440 | Msa1241190 | 0.804008 | 2.654188e-49 | -8.615850e-47 |
| Msa0069440 | Msa1374240 | 0.845754 | 3.333387e-59 | -8.615850e-47 |
| Msa0069440 | Msa1403910 | 0.807112 | 5.927121e-50 | -8.615850e-47 |
| Msa0069440 | Msa1426490 | 0.815270 | 1.007285e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069440 | MtrunA17_Chr1g0200191 | 97.740 | 177 | 4 | 0 | 1 | 177 | 1 | 177 | 3.45e-128 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069440 | AT3G52300.1 | 80.952 | 168 | 32 | 0 | 1 | 168 | 1 | 168 | 3.29e-101 | 288 |
| Msa0069440 | AT3G52300.2 | 78.704 | 108 | 23 | 0 | 1 | 108 | 1 | 108 | 8.71e-62 | 187 |
Find 49 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATAATATTCCCAGTCTA+TGG | 0.167189 | 1_2:+37879889 | None:intergenic |
| CAGTCAAGACACCCAATTTC+AGG | 0.179551 | 1_2:-37877326 | Msa0069440:three_prime_UTR |
| CTTACCAGTGCATCAAATTT+AGG | 0.208576 | 1_2:+37877882 | None:intergenic |
| GTATACATTTGTTCTGATTC+TGG | 0.223703 | 1_2:-37877255 | Msa0069440:three_prime_UTR |
| ATTTAGAAACTGTTGTCTTA+TGG | 0.283362 | 1_2:-37877352 | Msa0069440:three_prime_UTR |
| AGGAGATTAGGAACGATAAC+TGG | 0.292837 | 1_2:-37877539 | Msa0069440:CDS |
| GCTGAAGTTGGTTGAGCTTA+AGG | 0.315735 | 1_2:-37877782 | Msa0069440:intron |
| GTCCCAATCGATCTTCTTCC+CGG | 0.344356 | 1_2:+37880747 | None:intergenic |
| AATAAATTGTTGTGTTTGTC+TGG | 0.357169 | 1_2:-37877281 | Msa0069440:three_prime_UTR |
| TCTGAAAGAATCTGAACGTT+TGG | 0.374930 | 1_2:-37877743 | Msa0069440:CDS |
| AAAAGGAATTGGCACTCGTT+TGG | 0.433018 | 1_2:-37879867 | Msa0069440:CDS |
| AGCAATTTGATGAGGAGATT+AGG | 0.438102 | 1_2:-37877551 | Msa0069440:CDS |
| TCAAATTGCTTCTTCAGCTC+AGG | 0.438466 | 1_2:+37877564 | None:intergenic |
| AGTTACTGTGTCAACAAACT+TGG | 0.447924 | 1_2:+37877917 | None:intergenic |
| GACTGGGAATATTATAGAAA+AGG | 0.455154 | 1_2:-37879884 | Msa0069440:CDS |
| GAATATTATAGAAAAGGAAT+TGG | 0.458956 | 1_2:-37879878 | Msa0069440:CDS |
| TAAGCCTAAATTTGATGCAC+TGG | 0.467869 | 1_2:-37877886 | Msa0069440:intron |
| AGGAGCCTGAGCCCATAGAC+TGG | 0.471648 | 1_2:-37879901 | Msa0069440:CDS |
| AGAATCTGAACGTTTGGAAA+AGG | 0.472141 | 1_2:-37877737 | Msa0069440:CDS |
| CTATAATATTCCCAGTCTAT+GGG | 0.473165 | 1_2:+37879890 | None:intergenic |
| ATTTGTTCTGATTCTGGCAA+TGG | 0.477285 | 1_2:-37877249 | Msa0069440:three_prime_UTR |
| AAATTCACGACGAGCTTCAT+CGG | 0.482178 | 1_2:+37880702 | None:intergenic |
| ACAGATGTTGCATTCAAAGC+CGG | 0.489390 | 1_2:-37880766 | Msa0069440:CDS |
| GCAAGGAAAACATCAACTTC+AGG | 0.493258 | 1_2:+37877485 | None:intergenic |
| TCAAATTTAGGCTTATATTG+AGG | 0.499518 | 1_2:+37877894 | None:intergenic |
| AGGAATTGGCACTCGTTTGG+TGG | 0.500877 | 1_2:-37879864 | Msa0069440:CDS |
| CTTCTTCAGCTCAGGATGCT+CGG | 0.501457 | 1_2:+37877572 | None:intergenic |
| CAGATGTTGCATTCAAAGCC+GGG | 0.515624 | 1_2:-37880765 | Msa0069440:CDS |
| TATTCCCAGTCTATGGGCTC+AGG | 0.528775 | 1_2:+37879896 | None:intergenic |
| AAGCCGGGAAGAAGATCGAT+TGG | 0.530458 | 1_2:-37880750 | Msa0069440:CDS |
| GGAAGAAGATCGATTGGGAC+GGG | 0.534761 | 1_2:-37880744 | Msa0069440:CDS |
| AAAGTACTCATCTGCTGTCA+TGG | 0.536378 | 1_2:+37877596 | None:intergenic |
| GGAGATTAGGAACGATAACT+GGG | 0.553647 | 1_2:-37877538 | Msa0069440:CDS |
| GTTACTGTGTCAACAAACTT+GGG | 0.562398 | 1_2:+37877918 | None:intergenic |
| AGCCGGGAAGAAGATCGATT+GGG | 0.567684 | 1_2:-37880749 | Msa0069440:CDS |
| GGAGCCTGAGCCCATAGACT+GGG | 0.568751 | 1_2:-37879900 | Msa0069440:CDS |
| GAAGATCGATTGGGACGGGA+TGG | 0.577380 | 1_2:-37880740 | Msa0069440:CDS |
| TGCTAATGTACAGTCGCTGA+AGG | 0.578326 | 1_2:-37877710 | Msa0069440:intron |
| GGTTGAGCTTAAGGAAGCAG+AGG | 0.581516 | 1_2:-37877773 | Msa0069440:CDS |
| CTCTGGTAACGATAGTGTCA+AGG | 0.588551 | 1_2:-37880891 | None:intergenic |
| TATTATTTATTAAACCAGCA+AGG | 0.594786 | 1_2:+37877468 | None:intergenic |
| ACGATAGTGTCAAGGTGCGA+AGG | 0.595692 | 1_2:-37880883 | None:intergenic |
| ACTCGAAACAAAGTTCAGCC+AGG | 0.598938 | 1_2:-37880641 | Msa0069440:intron |
| AAAGCGAAAGCGAAAATGAG+CGG | 0.621372 | 1_2:-37880805 | Msa0069440:exon |
| GGGAAGAAGATCGATTGGGA+CGG | 0.627371 | 1_2:-37880745 | Msa0069440:CDS |
| GCTGAAGAAGCAATTTGATG+AGG | 0.630857 | 1_2:-37877559 | Msa0069440:CDS |
| TTACTGTGTCAACAAACTTG+GGG | 0.648687 | 1_2:+37877919 | None:intergenic |
| AAACTATCAAAGGTCACACA+AGG | 0.675809 | 1_2:-37877188 | None:intergenic |
| GAGATTAGGAACGATAACTG+GGG | 0.757484 | 1_2:-37877537 | Msa0069440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAAAATTATTTTTTTAT+TGG | - | chr1_2:37878915-37878934 | Msa0069440:intron | 0.0% |
| !! | TAAAAAAATACTAATATAAG+GGG | + | chr1_2:37878281-37878300 | None:intergenic | 10.0% |
| !! | TAAAAATGAGAAATTAATAT+AGG | - | chr1_2:37878806-37878825 | Msa0069440:intron | 10.0% |
| !!! | TTTTTTTAATCTGTATTTAA+TGG | - | chr1_2:37879079-37879098 | Msa0069440:intron | 10.0% |
| !!! | ATATATTCTAATGTAAATTT+TGG | + | chr1_2:37879649-37879668 | None:intergenic | 10.0% |
| !!! | TTTTTAGTGTTTTTATTATT+AGG | + | chr1_2:37880849-37880868 | None:intergenic | 10.0% |
| !! | AATACATAATCTATTTGTAT+AGG | + | chr1_2:37877885-37877904 | None:intergenic | 15.0% |
| !!! | TAATTTGATAACTACATAAT+TGG | + | chr1_2:37878065-37878084 | None:intergenic | 15.0% |
| !!! | AGTATTTTTTTATTTGTCAA+TGG | - | chr1_2:37878289-37878308 | Msa0069440:intron | 15.0% |
| !!! | TACTGTAAATATTTGTATTT+TGG | + | chr1_2:37878965-37878984 | None:intergenic | 15.0% |
| !!! | AATTATTTCTCAAATTGAAA+AGG | - | chr1_2:37879705-37879724 | Msa0069440:intron | 15.0% |
| !!! | TACATTATTTTTTTGTAACT+TGG | - | chr1_2:37880625-37880644 | Msa0069440:intron | 15.0% |
| !! | AATAGTTAAAAAACTATCAA+AGG | - | chr1_2:37880870-37880889 | Msa0069440:five_prime_UTR | 15.0% |
| !! | TGTAGTTATCAAATTATTAC+CGG | - | chr1_2:37878069-37878088 | Msa0069440:intron | 20.0% |
| !! | GAATATTATAGAAAAGGAAT+TGG | - | chr1_2:37878190-37878209 | Msa0069440:intron | 20.0% |
| !! | AATAACTTGACAACAAATAT+TGG | + | chr1_2:37878895-37878914 | None:intergenic | 20.0% |
| !! | TCATAATTATATAACTGAAC+TGG | + | chr1_2:37879395-37879414 | None:intergenic | 20.0% |
| !!! | GTTTTATAGTTGTTTTTTTC+AGG | - | chr1_2:37879482-37879501 | Msa0069440:intron | 20.0% |
| !!! | GTTAAATTTTAACATGCATT+AGG | + | chr1_2:37879625-37879644 | None:intergenic | 20.0% |
| !! | AGTTATTGCCTAAATATTTA+TGG | - | chr1_2:37880001-37880020 | Msa0069440:intron | 20.0% |
| !! | AATGGTATGTAAAATTTGAA+TGG | + | chr1_2:37880086-37880105 | None:intergenic | 20.0% |
| !! | AACATCAAAAGTTGAATTAA+TGG | + | chr1_2:37880104-37880123 | None:intergenic | 20.0% |
| !!! | TTCTCAGTTTTATGTAATAT+TGG | - | chr1_2:37880402-37880421 | Msa0069440:intron | 20.0% |
| !! | TATTATTTATTAAACCAGCA+AGG | + | chr1_2:37880603-37880622 | None:intergenic | 20.0% |
| !!! | AAAAACATTTTCCTGAAATT+GGG | + | chr1_2:37880756-37880775 | None:intergenic | 20.0% |
| !! | CTTCATCATCAATTTTGAAT+TGG | - | chr1_2:37877613-37877632 | Msa0069440:intron | 25.0% |
| !!! | ATCATGTTTTAGTGCATTTT+CGG | - | chr1_2:37877645-37877664 | Msa0069440:intron | 25.0% |
| ! | GTATTCAAAACATGATGAAA+AGG | + | chr1_2:37877855-37877874 | None:intergenic | 25.0% |
| ! | TATCATTTCTTATTAATCGC+AGG | - | chr1_2:37878147-37878166 | Msa0069440:intron | 25.0% |
| ! | AGGATATTGATAAATTCAAC+TGG | - | chr1_2:37878414-37878433 | Msa0069440:intron | 25.0% |
| !!! | AGTTCAGTTTTTTTAAGGAT+CGG | + | chr1_2:37878576-37878595 | None:intergenic | 25.0% |
| !!! | CAAACAGTTCAGTTTTTTTA+AGG | + | chr1_2:37878581-37878600 | None:intergenic | 25.0% |
| !! | AAAAAGATAATCTTGATAGC+TGG | + | chr1_2:37879247-37879266 | None:intergenic | 25.0% |
| !! | AGCTATCAAGATTATCTTTT+TGG | - | chr1_2:37879246-37879265 | Msa0069440:intron | 25.0% |
| ! | AATTATGAACCATAGTTTAC+TGG | - | chr1_2:37879407-37879426 | Msa0069440:intron | 25.0% |
| ! | ATGTCTATCAATTTCAGATA+GGG | + | chr1_2:37879555-37879574 | None:intergenic | 25.0% |
| ! | AATGTCTATCAATTTCAGAT+AGG | + | chr1_2:37879556-37879575 | None:intergenic | 25.0% |
| ! | CATTAGAATATATGAAACTG+TGG | - | chr1_2:37879656-37879675 | Msa0069440:intron | 25.0% |
| ! | AAGTACATAAGAAAAGAAAC+TGG | - | chr1_2:37879728-37879747 | Msa0069440:intron | 25.0% |
| ! | ATTGAATGAGACAAAGTTAT+AGG | + | chr1_2:37879774-37879793 | None:intergenic | 25.0% |
| ! | TAAAACCTGGAAATTGTATA+TGG | - | chr1_2:37879824-37879843 | Msa0069440:intron | 25.0% |
| ! | GACTACATCCATAAATATTT+AGG | + | chr1_2:37880012-37880031 | None:intergenic | 25.0% |
| ! | TCAAATTTAGGCTTATATTG+AGG | + | chr1_2:37880177-37880196 | None:intergenic | 25.0% |
| !! | TTTTCTGTGAAAACAAACAA+TGG | + | chr1_2:37880443-37880462 | None:intergenic | 25.0% |
| !!! | ATTGTTTGTTTTCACAGAAA+AGG | - | chr1_2:37880442-37880461 | Msa0069440:intron | 25.0% |
| ! | ATTTAGAAACTGTTGTCTTA+TGG | - | chr1_2:37880716-37880735 | Msa0069440:CDS | 25.0% |
| !! | CAAAAACATTTTCCTGAAAT+TGG | + | chr1_2:37880757-37880776 | None:intergenic | 25.0% |
| !!! | ATTTCAGGAAAATGTTTTTG+TGG | - | chr1_2:37880757-37880776 | Msa0069440:CDS | 25.0% |
| ! | AATAAATTGTTGTGTTTGTC+TGG | - | chr1_2:37880787-37880806 | Msa0069440:CDS | 25.0% |
| AGCATCTAAGAACAAAATGA+AGG | + | chr1_2:37877518-37877537 | None:intergenic | 30.0% | |
| TTGTACCTTTGTAATGATGT+TGG | - | chr1_2:37877748-37877767 | Msa0069440:CDS | 30.0% | |
| TGTACCTTTGTAATGATGTT+GGG | - | chr1_2:37877749-37877768 | Msa0069440:CDS | 30.0% | |
| AGATTATGTATTCAGTTACG+AGG | - | chr1_2:37877893-37877912 | Msa0069440:CDS | 30.0% | |
| CTATAATATTCCCAGTCTAT+GGG | + | chr1_2:37878181-37878200 | None:intergenic | 30.0% | |
| TCTATAATATTCCCAGTCTA+TGG | + | chr1_2:37878182-37878201 | None:intergenic | 30.0% | |
| GACTGGGAATATTATAGAAA+AGG | - | chr1_2:37878184-37878203 | Msa0069440:intron | 30.0% | |
| GTACCATTGAATACAAGAAT+CGG | + | chr1_2:37878442-37878461 | None:intergenic | 30.0% | |
| ! | TGGTACCATATTCTTTTCAT+AGG | - | chr1_2:37878456-37878475 | Msa0069440:intron | 30.0% |
| ! | GGTACCATATTCTTTTCATA+GGG | - | chr1_2:37878457-37878476 | Msa0069440:intron | 30.0% |
| TCTTCCCTATGAAAAGAATA+TGG | + | chr1_2:37878464-37878483 | None:intergenic | 30.0% | |
| !!! | TTCAGTTTTTTTAAGGATCG+GGG | + | chr1_2:37878574-37878593 | None:intergenic | 30.0% |
| !!! | GTTCAGTTTTTTTAAGGATC+GGG | + | chr1_2:37878575-37878594 | None:intergenic | 30.0% |
| !! | ACTGAACTACTTTTGAAGAA+TGG | + | chr1_2:37878654-37878673 | None:intergenic | 30.0% |
| ! | AAAGCAGTTTTACAAACAGT+TGG | - | chr1_2:37878847-37878866 | Msa0069440:intron | 30.0% |
| CGAATGAGACAAAAAGATAT+TGG | + | chr1_2:37879286-37879305 | None:intergenic | 30.0% | |
| TAAGCAAAACTGCAACTAAT+GGG | + | chr1_2:37879367-37879386 | None:intergenic | 30.0% | |
| AATTATATAACTGAACTGGC+TGG | + | chr1_2:37879391-37879410 | None:intergenic | 30.0% | |
| CTGATACTTAATAGCTTGAA+CGG | + | chr1_2:37879453-37879472 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTTTCAGGTCAGTT+AGG | - | chr1_2:37879491-37879510 | Msa0069440:intron | 30.0% |
| TGTCTATCAATTTCAGATAG+GGG | + | chr1_2:37879554-37879573 | None:intergenic | 30.0% | |
| ! | ATATATGAAACTGTGGATTG+TGG | - | chr1_2:37879663-37879682 | Msa0069440:intron | 30.0% |
| ! | TGTTATTTGACCTATTCACA+TGG | - | chr1_2:37879798-37879817 | Msa0069440:intron | 30.0% |
| GTTATTTGACCTATTCACAT+GGG | - | chr1_2:37879799-37879818 | Msa0069440:intron | 30.0% | |
| TGATACCATATACAATTTCC+AGG | + | chr1_2:37879832-37879851 | None:intergenic | 30.0% | |
| ATGCACGATTAATAAATGCA+AGG | + | chr1_2:37879911-37879930 | None:intergenic | 30.0% | |
| ! | TCGTGCATTGAATTGATTTA+AGG | - | chr1_2:37879923-37879942 | Msa0069440:intron | 30.0% |
| GGTATGTAAAATTTGAATGG+CGG | + | chr1_2:37880083-37880102 | None:intergenic | 30.0% | |
| CTTGATTGATAGAGAAAAGT+TGG | + | chr1_2:37880233-37880252 | None:intergenic | 30.0% | |
| ! | TGGTTTTTCTCCAGTTTAAA+AGG | - | chr1_2:37880645-37880664 | Msa0069440:CDS | 30.0% |
| ! | CTGCAGTTGTCAAAATTTTA+TGG | - | chr1_2:37880680-37880699 | Msa0069440:CDS | 30.0% |
| GTATACATTTGTTCTGATTC+TGG | - | chr1_2:37880813-37880832 | Msa0069440:five_prime_UTR | 30.0% | |
| TGTGAAGGAATTTATCTACC+TGG | + | chr1_2:37877448-37877467 | None:intergenic | 35.0% | |
| GAAATTAGAGAGATCTGTGA+AGG | + | chr1_2:37877463-37877482 | None:intergenic | 35.0% | |
| !! | TGCTAGATCGATTGACTTTT+AGG | - | chr1_2:37877534-37877553 | Msa0069440:CDS | 35.0% |
| GTACCTTTGTAATGATGTTG+GGG | - | chr1_2:37877750-37877769 | Msa0069440:CDS | 35.0% | |
| TTTCCCCAACATCATTACAA+AGG | + | chr1_2:37877756-37877775 | None:intergenic | 35.0% | |
| TTGTAATGATGTTGGGGAAA+TGG | - | chr1_2:37877756-37877775 | Msa0069440:CDS | 35.0% | |
| ATACCAACACTTCTGTTTGA+AGG | - | chr1_2:37877980-37877999 | Msa0069440:intron | 35.0% | |
| !! | TTAGAGCATGACTTGTTTGA+TGG | - | chr1_2:37878328-37878347 | Msa0069440:intron | 35.0% |
| TCATGCACTTTCTCTTCTTT+AGG | - | chr1_2:37878377-37878396 | Msa0069440:intron | 35.0% | |
| CATGCACTTTCTCTTCTTTA+GGG | - | chr1_2:37878378-37878397 | Msa0069440:intron | 35.0% | |
| ATGCACTTTCTCTTCTTTAG+GGG | - | chr1_2:37878379-37878398 | Msa0069440:intron | 35.0% | |
| GATCCGATTCTTGTATTCAA+TGG | - | chr1_2:37878436-37878455 | Msa0069440:intron | 35.0% | |
| TAATTCACAAAAGCCATCCT+CGG | - | chr1_2:37878492-37878511 | Msa0069440:intron | 35.0% | |
| CCAAAAAAAACTGAACTGTC+CGG | - | chr1_2:37878536-37878555 | Msa0069440:intron | 35.0% | |
| TGAGATGTCAATTGTGCTAA+GGG | + | chr1_2:37878781-37878800 | None:intergenic | 35.0% | |
| ATGAGATGTCAATTGTGCTA+AGG | + | chr1_2:37878782-37878801 | None:intergenic | 35.0% | |
| CTAAGCAAAACTGCAACTAA+TGG | + | chr1_2:37879368-37879387 | None:intergenic | 35.0% | |
| TACTTTGGTCCAGTAAACTA+TGG | + | chr1_2:37879419-37879438 | None:intergenic | 35.0% | |
| GTTATAGGAAACGTTGTCAT+GGG | + | chr1_2:37879759-37879778 | None:intergenic | 35.0% | |
| AGTTATAGGAAACGTTGTCA+TGG | + | chr1_2:37879760-37879779 | None:intergenic | 35.0% | |
| !!! | GGTTTTATTCCCATGTGAAT+AGG | + | chr1_2:37879811-37879830 | None:intergenic | 35.0% |
| ATTCACATGGGAATAAAACC+TGG | - | chr1_2:37879811-37879830 | Msa0069440:intron | 35.0% | |
| ! | GTAAAATTTGAATGGCGGAA+TGG | + | chr1_2:37880078-37880097 | None:intergenic | 35.0% |
| TGATGTTATGCTTCTTCTGT+AGG | - | chr1_2:37880117-37880136 | Msa0069440:intron | 35.0% | |
| TTACTGTGTCAACAAACTTG+GGG | + | chr1_2:37880152-37880171 | None:intergenic | 35.0% | |
| GTTACTGTGTCAACAAACTT+GGG | + | chr1_2:37880153-37880172 | None:intergenic | 35.0% | |
| AGTTACTGTGTCAACAAACT+TGG | + | chr1_2:37880154-37880173 | None:intergenic | 35.0% | |
| TAAGCCTAAATTTGATGCAC+TGG | - | chr1_2:37880182-37880201 | Msa0069440:intron | 35.0% | |
| CTTACCAGTGCATCAAATTT+AGG | + | chr1_2:37880189-37880208 | None:intergenic | 35.0% | |
| ! | ATGTGTTTTCTTGCTGAAGT+TGG | - | chr1_2:37880274-37880293 | Msa0069440:intron | 35.0% |
| TCTGAAAGAATCTGAACGTT+TGG | - | chr1_2:37880325-37880344 | Msa0069440:intron | 35.0% | |
| AGAATCTGAACGTTTGGAAA+AGG | - | chr1_2:37880331-37880350 | Msa0069440:intron | 35.0% | |
| AGGTAATAGAAATCACCACA+TGG | - | chr1_2:37880378-37880397 | Msa0069440:intron | 35.0% | |
| CATAAAACTGAGAAACCATG+TGG | + | chr1_2:37880396-37880415 | None:intergenic | 35.0% | |
| AGCAATTTGATGAGGAGATT+AGG | - | chr1_2:37880517-37880536 | Msa0069440:intron | 35.0% | |
| ! | ATGTGGAGAACCTTTTAAAC+TGG | + | chr1_2:37880658-37880677 | None:intergenic | 35.0% |
| ! | TTTTGACAACTGCAGAAATG+TGG | + | chr1_2:37880675-37880694 | None:intergenic | 35.0% |
| !! | TCAGGAAAATGTTTTTGTGG+CGG | - | chr1_2:37880760-37880779 | Msa0069440:CDS | 35.0% |
| ATTTGTTCTGATTCTGGCAA+TGG | - | chr1_2:37880819-37880838 | Msa0069440:five_prime_UTR | 35.0% | |
| AAAGCGAAAGCGAAAATGAG+CGG | - | chr1_2:37877263-37877282 | Msa0069440:three_prime_UTR | 40.0% | |
| ACAGATGTTGCATTCAAAGC+CGG | - | chr1_2:37877302-37877321 | Msa0069440:three_prime_UTR | 40.0% | |
| AAATTCACGACGAGCTTCAT+CGG | + | chr1_2:37877369-37877388 | None:intergenic | 40.0% | |
| TATTCAGTTACGAGGCTTAG+AGG | - | chr1_2:37877901-37877920 | Msa0069440:CDS | 40.0% | |
| ! | AAGCCTTCAAACAGAAGTGT+TGG | + | chr1_2:37877986-37878005 | None:intergenic | 40.0% |
| TCAGACACACTAACAAGTGT+CGG | + | chr1_2:37878018-37878037 | None:intergenic | 40.0% | |
| AAAAGGAATTGGCACTCGTT+TGG | - | chr1_2:37878201-37878220 | Msa0069440:intron | 40.0% | |
| ! | TCTCTTCTTTAGGGGTAAAG+TGG | - | chr1_2:37878387-37878406 | Msa0069440:intron | 40.0% |
| TTTAGGGGTAAAGTGGTAGA+AGG | - | chr1_2:37878394-37878413 | Msa0069440:intron | 40.0% | |
| AAAAGCCATCCTCGGAAATT+AGG | - | chr1_2:37878500-37878519 | Msa0069440:intron | 40.0% | |
| AAAGCCATCCTCGGAAATTA+GGG | - | chr1_2:37878501-37878520 | Msa0069440:intron | 40.0% | |
| ATGAACAACCCTAATTTCCG+AGG | + | chr1_2:37878512-37878531 | None:intergenic | 40.0% | |
| !!! | CCGGACAGTTCAGTTTTTTT+TGG | + | chr1_2:37878539-37878558 | None:intergenic | 40.0% |
| TCATTCGCAAAACGTGATGA+TGG | - | chr1_2:37879299-37879318 | Msa0069440:intron | 40.0% | |
| CATTCGCAAAACGTGATGAT+GGG | - | chr1_2:37879300-37879319 | Msa0069440:intron | 40.0% | |
| ! | ATTCGCAAAACGTGATGATG+GGG | - | chr1_2:37879301-37879320 | Msa0069440:intron | 40.0% |
| ACTGGACCAAAGTACAAGTT+CGG | - | chr1_2:37879425-37879444 | Msa0069440:intron | 40.0% | |
| !! | AATTTCAGATAGGGGTGTTC+GGG | + | chr1_2:37879546-37879565 | None:intergenic | 40.0% |
| !! | CAATTTCAGATAGGGGTGTT+CGG | + | chr1_2:37879547-37879566 | None:intergenic | 40.0% |
| AGACATTCTTTCGTTGTGTC+TGG | - | chr1_2:37879569-37879588 | Msa0069440:intron | 40.0% | |
| ! | TGCTTTTGCATTGCAGAACA+CGG | + | chr1_2:37879875-37879894 | None:intergenic | 40.0% |
| CATACATAGTGAGAGAGATG+AGG | - | chr1_2:37880040-37880059 | Msa0069440:intron | 40.0% | |
| ! | AAAGTACTCATCTGCTGTCA+TGG | + | chr1_2:37880475-37880494 | None:intergenic | 40.0% |
| TCAAATTGCTTCTTCAGCTC+AGG | + | chr1_2:37880507-37880526 | None:intergenic | 40.0% | |
| GCTGAAGAAGCAATTTGATG+AGG | - | chr1_2:37880509-37880528 | Msa0069440:intron | 40.0% | |
| AGGAGATTAGGAACGATAAC+TGG | - | chr1_2:37880529-37880548 | Msa0069440:intron | 40.0% | |
| GGAGATTAGGAACGATAACT+GGG | - | chr1_2:37880530-37880549 | Msa0069440:intron | 40.0% | |
| GAGATTAGGAACGATAACTG+GGG | - | chr1_2:37880531-37880550 | Msa0069440:intron | 40.0% | |
| GCAAGGAAAACATCAACTTC+AGG | + | chr1_2:37880586-37880605 | None:intergenic | 40.0% | |
| !!! | GAAGTTGATGTTTTCCTTGC+TGG | - | chr1_2:37880586-37880605 | Msa0069440:intron | 40.0% |
| CAGATGTTGCATTCAAAGCC+GGG | - | chr1_2:37877303-37877322 | Msa0069440:three_prime_UTR | 45.0% | |
| ACTCGAAACAAAGTTCAGCC+AGG | - | chr1_2:37877427-37877446 | Msa0069440:three_prime_UTR | 45.0% | |
| !! | CACTAACAAGTGTCGGACAT+CGG | + | chr1_2:37878011-37878030 | None:intergenic | 45.0% |
| !! | ATTACCGGTGTTGATGTGTC+AGG | - | chr1_2:37878084-37878103 | Msa0069440:intron | 45.0% |
| ACAACCCTAATTTCCGAGGA+TGG | + | chr1_2:37878508-37878527 | None:intergenic | 45.0% | |
| !! | TTTTAAGGATCGGGGCAGTT+GGG | + | chr1_2:37878566-37878585 | None:intergenic | 45.0% |
| !! | TTTTTAAGGATCGGGGCAGT+TGG | + | chr1_2:37878567-37878586 | None:intergenic | 45.0% |
| ! | TTTTGTGCGAACTGAACTGC+TGG | - | chr1_2:37878603-37878622 | Msa0069440:intron | 45.0% |
| AGAGAGAGCTGACAACAGTT+TGG | + | chr1_2:37878690-37878709 | None:intergenic | 45.0% | |
| ACGGATCCGAACTTGTACTT+TGG | + | chr1_2:37879434-37879453 | None:intergenic | 45.0% | |
| !! | ATTTCAGATAGGGGTGTTCG+GGG | + | chr1_2:37879545-37879564 | None:intergenic | 45.0% |
| ! | GCTGAAGTTGGTTGAGCTTA+AGG | - | chr1_2:37880286-37880305 | Msa0069440:intron | 45.0% |
| TGCTAATGTACAGTCGCTGA+AGG | - | chr1_2:37880358-37880377 | Msa0069440:intron | 45.0% | |
| CAGTCAAGACACCCAATTTC+AGG | - | chr1_2:37880742-37880761 | Msa0069440:CDS | 45.0% | |
| !! | ATAAAAAAATACTAATATAA+GGG | + | chr1_2:37878282-37878301 | None:intergenic | 5.0% |
| !! | AATAAAAAAATACTAATATA+AGG | + | chr1_2:37878283-37878302 | None:intergenic | 5.0% |
| AAGCCGGGAAGAAGATCGAT+TGG | - | chr1_2:37877318-37877337 | Msa0069440:three_prime_UTR | 50.0% | |
| AGCCGGGAAGAAGATCGATT+GGG | - | chr1_2:37877319-37877338 | Msa0069440:three_prime_UTR | 50.0% | |
| GTCCCAATCGATCTTCTTCC+CGG | + | chr1_2:37877324-37877343 | None:intergenic | 50.0% | |
| GGGAAGAAGATCGATTGGGA+CGG | - | chr1_2:37877323-37877342 | Msa0069440:three_prime_UTR | 50.0% | |
| GGAAGAAGATCGATTGGGAC+GGG | - | chr1_2:37877324-37877343 | Msa0069440:three_prime_UTR | 50.0% | |
| GACACCTGACACATCAACAC+CGG | + | chr1_2:37878091-37878110 | None:intergenic | 50.0% | |
| TATTCCCAGTCTATGGGCTC+AGG | + | chr1_2:37878175-37878194 | None:intergenic | 50.0% | |
| AGGAATTGGCACTCGTTTGG+TGG | - | chr1_2:37878204-37878223 | Msa0069440:intron | 50.0% | |
| !! | AAACGTGATGATGGGGTGGA+AGG | - | chr1_2:37879308-37879327 | Msa0069440:intron | 50.0% |
| GGTTGAGCTTAAGGAAGCAG+AGG | - | chr1_2:37880295-37880314 | Msa0069440:intron | 50.0% | |
| CTTCTTCAGCTCAGGATGCT+CGG | + | chr1_2:37880499-37880518 | None:intergenic | 50.0% | |
| GAAGATCGATTGGGACGGGA+TGG | - | chr1_2:37877328-37877347 | Msa0069440:three_prime_UTR | 55.0% | |
| !! | CGCAAAACGTGATGATGGGG+TGG | - | chr1_2:37879304-37879323 | Msa0069440:intron | 55.0% |
| !! | AGATAGGGGTGTTCGGGGTT+GGG | + | chr1_2:37879540-37879559 | None:intergenic | 55.0% |
| AGGAGCCTGAGCCCATAGAC+TGG | - | chr1_2:37878167-37878186 | Msa0069440:intron | 60.0% | |
| GGAGCCTGAGCCCATAGACT+GGG | - | chr1_2:37878168-37878187 | Msa0069440:intron | 60.0% | |
| ATCGGGGCAGTTGGGTTCTC+CGG | + | chr1_2:37878558-37878577 | None:intergenic | 60.0% | |
| !! | CAGATAGGGGTGTTCGGGGT+TGG | + | chr1_2:37879541-37879560 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 37877189 | 37880901 | 37877189 | ID=Msa0069440;Name=Msa0069440 |
| chr1_2 | mRNA | 37877189 | 37880901 | 37877189 | ID=Msa0069440-mRNA-1;Parent=Msa0069440;Name=Msa0069440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89|1|1|1|1|1|5|314|177 |
| chr1_2 | exon | 37877189 | 37877631 | 37877189 | ID=Msa0069440-mRNA-1:exon:11955;Parent=Msa0069440-mRNA-1 |
| chr1_2 | exon | 37877711 | 37877797 | 37877711 | ID=Msa0069440-mRNA-1:exon:11954;Parent=Msa0069440-mRNA-1 |
| chr1_2 | exon | 37877887 | 37877951 | 37877887 | ID=Msa0069440-mRNA-1:exon:11953;Parent=Msa0069440-mRNA-1 |
| chr1_2 | exon | 37879840 | 37879921 | 37879840 | ID=Msa0069440-mRNA-1:exon:11952;Parent=Msa0069440-mRNA-1 |
| chr1_2 | exon | 37880642 | 37880901 | 37880642 | ID=Msa0069440-mRNA-1:exon:11951;Parent=Msa0069440-mRNA-1 |
| chr1_2 | five_prime_UTR | 37880813 | 37880901 | 37880813 | ID=Msa0069440-mRNA-1:five_prime_utr;Parent=Msa0069440-mRNA-1 |
| chr1_2 | CDS | 37880642 | 37880812 | 37880642 | ID=Msa0069440-mRNA-1:cds;Parent=Msa0069440-mRNA-1 |
| chr1_2 | CDS | 37879840 | 37879921 | 37879840 | ID=Msa0069440-mRNA-1:cds;Parent=Msa0069440-mRNA-1 |
| chr1_2 | CDS | 37877887 | 37877951 | 37877887 | ID=Msa0069440-mRNA-1:cds;Parent=Msa0069440-mRNA-1 |
| chr1_2 | CDS | 37877711 | 37877797 | 37877711 | ID=Msa0069440-mRNA-1:cds;Parent=Msa0069440-mRNA-1 |
| chr1_2 | CDS | 37877503 | 37877631 | 37877503 | ID=Msa0069440-mRNA-1:cds;Parent=Msa0069440-mRNA-1 |
| chr1_2 | three_prime_UTR | 37877189 | 37877502 | 37877189 | ID=Msa0069440-mRNA-1:three_prime_utr;Parent=Msa0069440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
