AlfalfaGEDB | Msa0131560

M. sativa cultivar zhongmu-4 / Msa0131560

KEGG: K02138
GO: GO:0000274 GO:0000276 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016469 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0022626 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0042788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0045263 GO:0045265 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0070013 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990904
PFAM: PF05873.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131560	sp\|Q9FT52\|ATP5H_ARATH	80.952	168	32	0	1	168	1	168	3.24e-100	288

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131560	G7I9M9	97.740	177	4	0	1	177	1	177	1.79e-124	357

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0069440	Msa0131560	0.994598	1.393467e-208	-8.615850e-47
Msa0131490	Msa0131560	0.967328	3.976712e-127	-8.615850e-47
Msa0131560	Msa0177360	0.967899	6.437495e-128	-8.615850e-47
Msa0131560	Msa0568470	0.804778	1.834734e-49	-8.615850e-47
Msa0131560	Msa0581600	0.973578	1.147247e-136	-8.615850e-47
Msa0131560	Msa0604960	0.834151	3.537766e-56	-8.615850e-47
Msa0131560	Msa0659030	0.848492	5.920392e-60	-8.615850e-47
Msa0131560	Msa0660590	0.980434	3.277862e-150	-8.615850e-47
Msa0131560	Msa0705000	0.851146	1.073113e-60	-8.615850e-47
Msa0131560	Msa0705040	0.855777	5.023667e-62	-8.615850e-47
Msa0131560	Msa1115590	0.801783	7.649840e-49	-8.615850e-47
Msa0131560	Msa1125580	0.824476	7.907993e-54	-8.615850e-47
Msa0131560	Msa1374240	0.835472	1.645016e-56	-8.615850e-47
Msa0131560	Msa1403910	0.800336	1.511978e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131560	MtrunA17_Chr1g0200191	97.740	177	4	0	1	177	1	177	3.45e-128	357

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0131560	AT3G52300.1	80.952	168	32	0	1	168	1	168	3.29e-101	288
Msa0131560	AT3G52300.2	78.704	108	23	0	1	108	1	108	8.71e-62	187

Find 50 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTATAATATTCCCAGTCTA+TGG	0.167189	1_3:+62434800	None:intergenic
CAGTCAAGACACCCAATTTC+AGG	0.179551	1_3:-62432250	Msa0131560:three_prime_UTR
CTTACCAGTGCATCAAATTT+AGG	0.208576	1_3:+62432806	None:intergenic
GTATACATTTGTTCTGATTC+TGG	0.223703	1_3:-62432179	Msa0131560:three_prime_UTR
ATTTAGAAACTGTTGTCTTA+TGG	0.283362	1_3:-62432276	Msa0131560:three_prime_UTR
AGGAGATTAGGAACGATAAC+TGG	0.292837	1_3:-62432463	Msa0131560:CDS
GCTGAAGTTGGTTGAGCTTA+AGG	0.315735	1_3:-62432706	Msa0131560:intron
GTCCCAATCGATCTTCTTCC+CGG	0.344356	1_3:+62435661	None:intergenic
GCCTTCGCACCTTGACACTA+TGG	0.345687	1_3:+62435796	None:intergenic
AATAAATTGTTGTGTTTGTC+TGG	0.357169	1_3:-62432205	Msa0131560:three_prime_UTR
TCTGAAAGAATCTGAACGTT+TGG	0.374930	1_3:-62432667	Msa0131560:CDS
AAAAGGAATTGGCACTCGTT+TGG	0.433018	1_3:-62434778	Msa0131560:CDS
AGCAATTTGATGAGGAGATT+AGG	0.438102	1_3:-62432475	Msa0131560:CDS
TCAAATTGCTTCTTCAGCTC+AGG	0.438466	1_3:+62432488	None:intergenic
AGTTACTGTGTCAACAAACT+TGG	0.447924	1_3:+62432841	None:intergenic
GACTGGGAATATTATAGAAA+AGG	0.455154	1_3:-62434795	Msa0131560:CDS
GAATATTATAGAAAAGGAAT+TGG	0.458956	1_3:-62434789	Msa0131560:CDS
TAAGCCTAAATTTGATGCAC+TGG	0.467869	1_3:-62432810	Msa0131560:intron
AGGAGCCTGAGCCCATAGAC+TGG	0.471648	1_3:-62434812	Msa0131560:CDS
AGAATCTGAACGTTTGGAAA+AGG	0.472141	1_3:-62432661	Msa0131560:CDS
CTATAATATTCCCAGTCTAT+GGG	0.473165	1_3:+62434801	None:intergenic
ATTTGTTCTGATTCTGGCAA+TGG	0.477285	1_3:-62432173	Msa0131560:three_prime_UTR
AAATTCACGACGAGCTTCAT+CGG	0.482178	1_3:+62435616	None:intergenic
ACAGATGTTGCATTCAAAGC+CGG	0.489390	1_3:-62435680	Msa0131560:CDS
GCAAGGAAAACATCAACTTC+AGG	0.493258	1_3:+62432409	None:intergenic
TCAAATTTAGGCTTATATTG+AGG	0.499518	1_3:+62432818	None:intergenic
AGGAATTGGCACTCGTTTGG+TGG	0.500877	1_3:-62434775	Msa0131560:CDS
CTTCTTCAGCTCAGGATGCT+CGG	0.501457	1_3:+62432496	None:intergenic
CAGATGTTGCATTCAAAGCC+GGG	0.515624	1_3:-62435679	Msa0131560:CDS
TATTCCCAGTCTATGGGCTC+AGG	0.528775	1_3:+62434807	None:intergenic
AAGCCGGGAAGAAGATCGAT+TGG	0.530458	1_3:-62435664	Msa0131560:CDS
GGAAGAAGATCGATTGGGAC+GGG	0.534761	1_3:-62435658	Msa0131560:CDS
AAAGTACTCATCTGCTGTCA+TGG	0.536378	1_3:+62432520	None:intergenic
GGAGATTAGGAACGATAACT+GGG	0.553647	1_3:-62432462	Msa0131560:CDS
GTTACTGTGTCAACAAACTT+GGG	0.562398	1_3:+62432842	None:intergenic
AGCCGGGAAGAAGATCGATT+GGG	0.567684	1_3:-62435663	Msa0131560:CDS
GGAGCCTGAGCCCATAGACT+GGG	0.568751	1_3:-62434811	Msa0131560:CDS
ACCATAGTGTCAAGGTGCGA+AGG	0.577328	1_3:-62435797	None:intergenic
GAAGATCGATTGGGACGGGA+TGG	0.577380	1_3:-62435654	Msa0131560:CDS
CTCTGGTAACCATAGTGTCA+AGG	0.577381	1_3:-62435805	None:intergenic
TGCTAATGTACAGTCGCTGA+AGG	0.578326	1_3:-62432634	Msa0131560:intron
GGTTGAGCTTAAGGAAGCAG+AGG	0.581516	1_3:-62432697	Msa0131560:CDS
TATTATTTATTAAACCAGCA+AGG	0.594786	1_3:+62432392	None:intergenic
ACTCGAAACAAAGTTCAGCC+AGG	0.598938	1_3:-62435555	Msa0131560:intron
AAAGCGAAAGCGAAAATGAG+CGG	0.621372	1_3:-62435719	Msa0131560:exon
GGGAAGAAGATCGATTGGGA+CGG	0.627371	1_3:-62435659	Msa0131560:CDS
GCTGAAGAAGCAATTTGATG+AGG	0.630857	1_3:-62432483	Msa0131560:CDS
TTACTGTGTCAACAAACTTG+GGG	0.648687	1_3:+62432843	None:intergenic
AAACTATCAAAGGTCACACA+AGG	0.675809	1_3:-62432112	None:intergenic
GAGATTAGGAACGATAACTG+GGG	0.757484	1_3:-62432461	Msa0131560:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTAAAATTATTTTTTTTAT+TGG	-	chr1_3:62433841-62433860	Msa0131560:intron	0.0%
!!	TAAAAAAATACTAATATAAG+GGG	+	chr1_3:62433208-62433227	None:intergenic	10.0%
!!	TAAAAATGAGAAATTAATAT+AGG	-	chr1_3:62433731-62433750	Msa0131560:intron	10.0%
!!!	TTTTTTTAATCTGTATTTAA+TGG	-	chr1_3:62434020-62434039	Msa0131560:intron	10.0%
!!!	ATATATTCTAATGTAAATTT+TGG	+	chr1_3:62434590-62434609	None:intergenic	10.0%
!!!	TTTTTAGTGTTTTTATTATT+AGG	+	chr1_3:62435763-62435782	None:intergenic	10.0%
!!	AATACATAATCTATTTGTAT+AGG	+	chr1_3:62432812-62432831	None:intergenic	15.0%
!!!	TAATTTGATAACTACATAAT+TGG	+	chr1_3:62432992-62433011	None:intergenic	15.0%
!!!	AGTATTTTTTTATTTGTCAA+TGG	-	chr1_3:62433216-62433235	Msa0131560:intron	15.0%
!!!	TACTGTAAATATTTGTATTT+TGG	+	chr1_3:62433891-62433910	None:intergenic	15.0%
!!!	AATTATTTCTCAAATTGAAA+AGG	-	chr1_3:62434646-62434665	Msa0131560:intron	15.0%
!!!	TACATTATTTTTTTGTAACT+TGG	-	chr1_3:62435539-62435558	Msa0131560:intron	15.0%
!!	AATAGTTAAAAAACTATCAA+AGG	-	chr1_3:62435784-62435803	Msa0131560:five_prime_UTR	15.0%
!!	TGTAGTTATCAAATTATTAC+CGG	-	chr1_3:62432996-62433015	Msa0131560:intron	20.0%
!!	GAATATTATAGAAAAGGAAT+TGG	-	chr1_3:62433117-62433136	Msa0131560:intron	20.0%
!!	AATAACTTGACAACAAATAT+TGG	+	chr1_3:62433820-62433839	None:intergenic	20.0%
!!	TCATAATTATATAACTGAAC+TGG	+	chr1_3:62434336-62434355	None:intergenic	20.0%
!!!	GTTTTATAGTTGTTTTTTTC+AGG	-	chr1_3:62434423-62434442	Msa0131560:intron	20.0%
!!!	GTTAAATTTTAACATGCATT+AGG	+	chr1_3:62434566-62434585	None:intergenic	20.0%
!!	AGTTATTGCCTAAATATTTA+TGG	-	chr1_3:62434915-62434934	Msa0131560:intron	20.0%
!!	AATGGTATGTAAAATTTGAA+TGG	+	chr1_3:62435000-62435019	None:intergenic	20.0%
!!	AACATCAAAAGTTGAATTAA+TGG	+	chr1_3:62435018-62435037	None:intergenic	20.0%
!!!	TTCTCAGTTTTATGTAATAT+TGG	-	chr1_3:62435316-62435335	Msa0131560:intron	20.0%
!!	TATTATTTATTAAACCAGCA+AGG	+	chr1_3:62435517-62435536	None:intergenic	20.0%
!!!	AAAAACATTTTCCTGAAATT+GGG	+	chr1_3:62435670-62435689	None:intergenic	20.0%
!!	CTTCATCATCAATTTTGAAT+TGG	-	chr1_3:62432537-62432556	Msa0131560:intron	25.0%
!!!	ATCATGTTTTAGTGCATTTT+CGG	-	chr1_3:62432569-62432588	Msa0131560:intron	25.0%
!	GTATTCAAAACATGATGAAA+AGG	+	chr1_3:62432782-62432801	None:intergenic	25.0%
!	TATCATTTCTTATTAATCGC+AGG	-	chr1_3:62433074-62433093	Msa0131560:intron	25.0%
!	AGGATATTGATAAATTCAAC+TGG	-	chr1_3:62433341-62433360	Msa0131560:intron	25.0%
!!!	AGTTCAGTTTTTTTAAGGAT+CGG	+	chr1_3:62433503-62433522	None:intergenic	25.0%
!!!	CAAACAGTTCAGTTTTTTTA+AGG	+	chr1_3:62433508-62433527	None:intergenic	25.0%
!!	AAAAAGATAATCTTGATAGC+TGG	+	chr1_3:62434188-62434207	None:intergenic	25.0%
!!	AGCTATCAAGATTATCTTTT+TGG	-	chr1_3:62434187-62434206	Msa0131560:intron	25.0%
!	AATTATGAACCATAGTTTAC+TGG	-	chr1_3:62434348-62434367	Msa0131560:intron	25.0%
!	ATGTCTATCAATTTCAGATA+GGG	+	chr1_3:62434496-62434515	None:intergenic	25.0%
!	AATGTCTATCAATTTCAGAT+AGG	+	chr1_3:62434497-62434516	None:intergenic	25.0%
!	CATTAGAATATATGAAACTG+TGG	-	chr1_3:62434597-62434616	Msa0131560:intron	25.0%
!	AAGTACATAAGAAAAGAAAC+TGG	-	chr1_3:62434669-62434688	Msa0131560:intron	25.0%
!	ATTGAATGAGACAAAGTTAT+AGG	+	chr1_3:62434715-62434734	None:intergenic	25.0%
!	ATAAACCTGGAAATTGTATA+TGG	-	chr1_3:62434764-62434783	Msa0131560:CDS	25.0%
!	GACTACATCCATAAATATTT+AGG	+	chr1_3:62434926-62434945	None:intergenic	25.0%
!	TCAAATTTAGGCTTATATTG+AGG	+	chr1_3:62435091-62435110	None:intergenic	25.0%
!!	TTTTCTGTGAAAACAAACAA+TGG	+	chr1_3:62435357-62435376	None:intergenic	25.0%
!!!	ATTGTTTGTTTTCACAGAAA+AGG	-	chr1_3:62435356-62435375	Msa0131560:intron	25.0%
!	ATTTAGAAACTGTTGTCTTA+TGG	-	chr1_3:62435630-62435649	Msa0131560:CDS	25.0%
!!	CAAAAACATTTTCCTGAAAT+TGG	+	chr1_3:62435671-62435690	None:intergenic	25.0%
!!!	ATTTCAGGAAAATGTTTTTG+TGG	-	chr1_3:62435671-62435690	Msa0131560:CDS	25.0%
!	AATAAATTGTTGTGTTTGTC+TGG	-	chr1_3:62435701-62435720	Msa0131560:CDS	25.0%
	AGCATCTAAGAACAAAATGA+AGG	+	chr1_3:62432442-62432461	None:intergenic	30.0%
	TTGTACCTTTGTAATGATGT+TGG	-	chr1_3:62432675-62432694	Msa0131560:CDS	30.0%
	TGTACCTTTGTAATGATGTT+GGG	-	chr1_3:62432676-62432695	Msa0131560:CDS	30.0%
	AGATTATGTATTCAGTTACG+AGG	-	chr1_3:62432820-62432839	Msa0131560:CDS	30.0%
	CTATAATATTCCCAGTCTAT+GGG	+	chr1_3:62433108-62433127	None:intergenic	30.0%
	TCTATAATATTCCCAGTCTA+TGG	+	chr1_3:62433109-62433128	None:intergenic	30.0%
	GACTGGGAATATTATAGAAA+AGG	-	chr1_3:62433111-62433130	Msa0131560:intron	30.0%
	GTACCATTGAATACAAGAAT+CGG	+	chr1_3:62433369-62433388	None:intergenic	30.0%
!	TGGTACCATATTCTTTTCAT+AGG	-	chr1_3:62433383-62433402	Msa0131560:intron	30.0%
!	GGTACCATATTCTTTTCATA+GGG	-	chr1_3:62433384-62433403	Msa0131560:intron	30.0%
	TCTTCCCTATGAAAAGAATA+TGG	+	chr1_3:62433391-62433410	None:intergenic	30.0%
!!!	TTCAGTTTTTTTAAGGATCG+GGG	+	chr1_3:62433501-62433520	None:intergenic	30.0%
!!!	GTTCAGTTTTTTTAAGGATC+GGG	+	chr1_3:62433502-62433521	None:intergenic	30.0%
!!	ACTGAACTACTTTTGAAGAA+TGG	+	chr1_3:62433581-62433600	None:intergenic	30.0%
!	AAAGCAGTTTTACAAACAGT+TGG	-	chr1_3:62433772-62433791	Msa0131560:intron	30.0%
	CGAATGAGACAAAAAGATAT+TGG	+	chr1_3:62434227-62434246	None:intergenic	30.0%
	TAAGCAAAACTGCAACTAAT+GGG	+	chr1_3:62434308-62434327	None:intergenic	30.0%
	AATTATATAACTGAACTGGC+TGG	+	chr1_3:62434332-62434351	None:intergenic	30.0%
	CTGATACTTAATAGCTTGAA+CGG	+	chr1_3:62434394-62434413	None:intergenic	30.0%
!!!	TTGTTTTTTTCAGGTCAGTT+AGG	-	chr1_3:62434432-62434451	Msa0131560:intron	30.0%
	TGTCTATCAATTTCAGATAG+GGG	+	chr1_3:62434495-62434514	None:intergenic	30.0%
!	ATATATGAAACTGTGGATTG+TGG	-	chr1_3:62434604-62434623	Msa0131560:intron	30.0%
!	TGTTATTTGACCTATTCACA+TGG	-	chr1_3:62434739-62434758	Msa0131560:intron	30.0%
	GTTATTTGACCTATTCACAT+GGG	-	chr1_3:62434740-62434759	Msa0131560:intron	30.0%
	TGATACCATATACAATTTCC+AGG	+	chr1_3:62434772-62434791	None:intergenic	30.0%
	AATAAATGCAAGGATGAACA+CGG	+	chr1_3:62434815-62434834	None:intergenic	30.0%
	ATGCACGATTAATAAATGCA+AGG	+	chr1_3:62434825-62434844	None:intergenic	30.0%
!	TCGTGCATTGAATTGATTTA+AGG	-	chr1_3:62434837-62434856	Msa0131560:intron	30.0%
	GGTATGTAAAATTTGAATGG+CGG	+	chr1_3:62434997-62435016	None:intergenic	30.0%
	CTTGATTGATAGAGAAAAGT+TGG	+	chr1_3:62435147-62435166	None:intergenic	30.0%
!	TGGTTTTTCTCCAGTTTAAA+AGG	-	chr1_3:62435559-62435578	Msa0131560:CDS	30.0%
!	CTGCAGTTGTCAAAATTTTA+TGG	-	chr1_3:62435594-62435613	Msa0131560:CDS	30.0%
	GTATACATTTGTTCTGATTC+TGG	-	chr1_3:62435727-62435746	Msa0131560:five_prime_UTR	30.0%
	TGTGAAGGAATTTATCTACC+TGG	+	chr1_3:62432372-62432391	None:intergenic	35.0%
	GAAATTAGAGAGATCTGTGA+AGG	+	chr1_3:62432387-62432406	None:intergenic	35.0%
!!	TGCTAGATCGATTGACTTTT+AGG	-	chr1_3:62432458-62432477	Msa0131560:CDS	35.0%
	GTACCTTTGTAATGATGTTG+GGG	-	chr1_3:62432677-62432696	Msa0131560:CDS	35.0%
	TTTCCCCAACATCATTACAA+AGG	+	chr1_3:62432683-62432702	None:intergenic	35.0%
	TTGTAATGATGTTGGGGAAA+TGG	-	chr1_3:62432683-62432702	Msa0131560:CDS	35.0%
	ATACCAACACTTCTGTTTGA+AGG	-	chr1_3:62432907-62432926	Msa0131560:intron	35.0%
!!	TTAGAGCATGACTTGTTTGA+TGG	-	chr1_3:62433255-62433274	Msa0131560:intron	35.0%
	TCATGCACTTTCTCTTCTTT+AGG	-	chr1_3:62433304-62433323	Msa0131560:intron	35.0%
	CATGCACTTTCTCTTCTTTA+GGG	-	chr1_3:62433305-62433324	Msa0131560:intron	35.0%
	ATGCACTTTCTCTTCTTTAG+GGG	-	chr1_3:62433306-62433325	Msa0131560:intron	35.0%
	GATCCGATTCTTGTATTCAA+TGG	-	chr1_3:62433363-62433382	Msa0131560:intron	35.0%
	TAATTCACAAAAGCCATCCT+CGG	-	chr1_3:62433419-62433438	Msa0131560:intron	35.0%
	CCAAAAAAAACTGAACTGTC+CGG	-	chr1_3:62433463-62433482	Msa0131560:intron	35.0%
	TGAGATGTCAATTGTGCTAA+GGG	+	chr1_3:62433706-62433725	None:intergenic	35.0%
	ATGAGATGTCAATTGTGCTA+AGG	+	chr1_3:62433707-62433726	None:intergenic	35.0%
	CTAAGCAAAACTGCAACTAA+TGG	+	chr1_3:62434309-62434328	None:intergenic	35.0%
	TACTTTGGTCCAGTAAACTA+TGG	+	chr1_3:62434360-62434379	None:intergenic	35.0%
	GTTATAGGAAACGTTGTCAT+GGG	+	chr1_3:62434700-62434719	None:intergenic	35.0%
	AGTTATAGGAAACGTTGTCA+TGG	+	chr1_3:62434701-62434720	None:intergenic	35.0%
	AGGTTTATTCCCATGTGAAT+AGG	+	chr1_3:62434752-62434771	None:intergenic	35.0%
	TATTCACATGGGAATAAACC+TGG	-	chr1_3:62434751-62434770	Msa0131560:CDS	35.0%
!	GTAAAATTTGAATGGCGGAA+TGG	+	chr1_3:62434992-62435011	None:intergenic	35.0%
	TGATGTTATGCTTCTTCTGT+AGG	-	chr1_3:62435031-62435050	Msa0131560:intron	35.0%
	TTACTGTGTCAACAAACTTG+GGG	+	chr1_3:62435066-62435085	None:intergenic	35.0%
	GTTACTGTGTCAACAAACTT+GGG	+	chr1_3:62435067-62435086	None:intergenic	35.0%
	AGTTACTGTGTCAACAAACT+TGG	+	chr1_3:62435068-62435087	None:intergenic	35.0%
	TAAGCCTAAATTTGATGCAC+TGG	-	chr1_3:62435096-62435115	Msa0131560:intron	35.0%
	CTTACCAGTGCATCAAATTT+AGG	+	chr1_3:62435103-62435122	None:intergenic	35.0%
!	ATGTGTTTTCTTGCTGAAGT+TGG	-	chr1_3:62435188-62435207	Msa0131560:intron	35.0%
	TCTGAAAGAATCTGAACGTT+TGG	-	chr1_3:62435239-62435258	Msa0131560:intron	35.0%
	AGAATCTGAACGTTTGGAAA+AGG	-	chr1_3:62435245-62435264	Msa0131560:intron	35.0%
	AGGTAATAGAAATCACCACA+TGG	-	chr1_3:62435292-62435311	Msa0131560:intron	35.0%
	CATAAAACTGAGAAACCATG+TGG	+	chr1_3:62435310-62435329	None:intergenic	35.0%
	AGCAATTTGATGAGGAGATT+AGG	-	chr1_3:62435431-62435450	Msa0131560:intron	35.0%
!	ATGTGGAGAACCTTTTAAAC+TGG	+	chr1_3:62435572-62435591	None:intergenic	35.0%
!	TTTTGACAACTGCAGAAATG+TGG	+	chr1_3:62435589-62435608	None:intergenic	35.0%
!!	TCAGGAAAATGTTTTTGTGG+CGG	-	chr1_3:62435674-62435693	Msa0131560:CDS	35.0%
	ATTTGTTCTGATTCTGGCAA+TGG	-	chr1_3:62435733-62435752	Msa0131560:five_prime_UTR	35.0%
	AAAGCGAAAGCGAAAATGAG+CGG	-	chr1_3:62432187-62432206	Msa0131560:three_prime_UTR	40.0%
	ACAGATGTTGCATTCAAAGC+CGG	-	chr1_3:62432226-62432245	Msa0131560:three_prime_UTR	40.0%
	AAATTCACGACGAGCTTCAT+CGG	+	chr1_3:62432293-62432312	None:intergenic	40.0%
	TATTCAGTTACGAGGCTTAG+AGG	-	chr1_3:62432828-62432847	Msa0131560:CDS	40.0%
!	AAGCCTTCAAACAGAAGTGT+TGG	+	chr1_3:62432913-62432932	None:intergenic	40.0%
	TCAGACACACTAACAAGTGT+CGG	+	chr1_3:62432945-62432964	None:intergenic	40.0%
	AAAAGGAATTGGCACTCGTT+TGG	-	chr1_3:62433128-62433147	Msa0131560:intron	40.0%
!	TCTCTTCTTTAGGGGTAAAG+TGG	-	chr1_3:62433314-62433333	Msa0131560:intron	40.0%
	TTTAGGGGTAAAGTGGTAGA+AGG	-	chr1_3:62433321-62433340	Msa0131560:intron	40.0%
	AAAAGCCATCCTCGGAAATT+AGG	-	chr1_3:62433427-62433446	Msa0131560:intron	40.0%
	AAAGCCATCCTCGGAAATTA+GGG	-	chr1_3:62433428-62433447	Msa0131560:intron	40.0%
	ATGAACAACCCTAATTTCCG+AGG	+	chr1_3:62433439-62433458	None:intergenic	40.0%
!!!	CCGGACAGTTCAGTTTTTTT+TGG	+	chr1_3:62433466-62433485	None:intergenic	40.0%
	TCATTCGCAAAACGTGATGA+TGG	-	chr1_3:62434240-62434259	Msa0131560:intron	40.0%
	CATTCGCAAAACGTGATGAT+GGG	-	chr1_3:62434241-62434260	Msa0131560:intron	40.0%
!	ATTCGCAAAACGTGATGATG+GGG	-	chr1_3:62434242-62434261	Msa0131560:intron	40.0%
	ACTGGACCAAAGTACAAGTT+CGG	-	chr1_3:62434366-62434385	Msa0131560:intron	40.0%
!!	AATTTCAGATAGGGGTGTTC+GGG	+	chr1_3:62434487-62434506	None:intergenic	40.0%
!!	CAATTTCAGATAGGGGTGTT+CGG	+	chr1_3:62434488-62434507	None:intergenic	40.0%
	AGACATTCTTTCGTTGTGTC+TGG	-	chr1_3:62434510-62434529	Msa0131560:intron	40.0%
	CATACATAGTGAGAGAGATG+AGG	-	chr1_3:62434954-62434973	Msa0131560:intron	40.0%
!	AAAGTACTCATCTGCTGTCA+TGG	+	chr1_3:62435389-62435408	None:intergenic	40.0%
	TCAAATTGCTTCTTCAGCTC+AGG	+	chr1_3:62435421-62435440	None:intergenic	40.0%
	GCTGAAGAAGCAATTTGATG+AGG	-	chr1_3:62435423-62435442	Msa0131560:intron	40.0%
	AGGAGATTAGGAACGATAAC+TGG	-	chr1_3:62435443-62435462	Msa0131560:intron	40.0%
	GGAGATTAGGAACGATAACT+GGG	-	chr1_3:62435444-62435463	Msa0131560:intron	40.0%
	GAGATTAGGAACGATAACTG+GGG	-	chr1_3:62435445-62435464	Msa0131560:intron	40.0%
	GCAAGGAAAACATCAACTTC+AGG	+	chr1_3:62435500-62435519	None:intergenic	40.0%
!!!	GAAGTTGATGTTTTCCTTGC+TGG	-	chr1_3:62435500-62435519	Msa0131560:intron	40.0%
	CAGATGTTGCATTCAAAGCC+GGG	-	chr1_3:62432227-62432246	Msa0131560:three_prime_UTR	45.0%
	ACTCGAAACAAAGTTCAGCC+AGG	-	chr1_3:62432351-62432370	Msa0131560:three_prime_UTR	45.0%
!!	CACTAACAAGTGTCGGACAT+CGG	+	chr1_3:62432938-62432957	None:intergenic	45.0%
!!	ATTACCGGTGTTGATGTGTC+AGG	-	chr1_3:62433011-62433030	Msa0131560:intron	45.0%
	ACAACCCTAATTTCCGAGGA+TGG	+	chr1_3:62433435-62433454	None:intergenic	45.0%
!!	TTTTAAGGATCGGGGCAGTT+GGG	+	chr1_3:62433493-62433512	None:intergenic	45.0%
!!	TTTTTAAGGATCGGGGCAGT+TGG	+	chr1_3:62433494-62433513	None:intergenic	45.0%
!	TTTTGTGCGAACTGAACTGC+TGG	-	chr1_3:62433530-62433549	Msa0131560:intron	45.0%
	AGAGAGAGCTGACAACAGTT+TGG	+	chr1_3:62433617-62433636	None:intergenic	45.0%
	ACGGATCCGAACTTGTACTT+TGG	+	chr1_3:62434375-62434394	None:intergenic	45.0%
!!	ATTTCAGATAGGGGTGTTCG+GGG	+	chr1_3:62434486-62434505	None:intergenic	45.0%
!	GCTGAAGTTGGTTGAGCTTA+AGG	-	chr1_3:62435200-62435219	Msa0131560:intron	45.0%
	TGCTAATGTACAGTCGCTGA+AGG	-	chr1_3:62435272-62435291	Msa0131560:intron	45.0%
	CAGTCAAGACACCCAATTTC+AGG	-	chr1_3:62435656-62435675	Msa0131560:CDS	45.0%
!!	ATAAAAAAATACTAATATAA+GGG	+	chr1_3:62433209-62433228	None:intergenic	5.0%
!!	AATAAAAAAATACTAATATA+AGG	+	chr1_3:62433210-62433229	None:intergenic	5.0%
	AAGCCGGGAAGAAGATCGAT+TGG	-	chr1_3:62432242-62432261	Msa0131560:three_prime_UTR	50.0%
	AGCCGGGAAGAAGATCGATT+GGG	-	chr1_3:62432243-62432262	Msa0131560:three_prime_UTR	50.0%
	GTCCCAATCGATCTTCTTCC+CGG	+	chr1_3:62432248-62432267	None:intergenic	50.0%
	GGGAAGAAGATCGATTGGGA+CGG	-	chr1_3:62432247-62432266	Msa0131560:three_prime_UTR	50.0%
	GGAAGAAGATCGATTGGGAC+GGG	-	chr1_3:62432248-62432267	Msa0131560:three_prime_UTR	50.0%
	GACACCTGACACATCAACAC+CGG	+	chr1_3:62433018-62433037	None:intergenic	50.0%
	TATTCCCAGTCTATGGGCTC+AGG	+	chr1_3:62433102-62433121	None:intergenic	50.0%
	AGGAATTGGCACTCGTTTGG+TGG	-	chr1_3:62433131-62433150	Msa0131560:intron	50.0%
!!	AAACGTGATGATGGGGTGGA+AGG	-	chr1_3:62434249-62434268	Msa0131560:intron	50.0%
	GGTTGAGCTTAAGGAAGCAG+AGG	-	chr1_3:62435209-62435228	Msa0131560:intron	50.0%
	CTTCTTCAGCTCAGGATGCT+CGG	+	chr1_3:62435413-62435432	None:intergenic	50.0%
	GAAGATCGATTGGGACGGGA+TGG	-	chr1_3:62432252-62432271	Msa0131560:three_prime_UTR	55.0%
!!	CGCAAAACGTGATGATGGGG+TGG	-	chr1_3:62434245-62434264	Msa0131560:intron	55.0%
!!	AGATAGGGGTGTTCGGGGTT+GGG	+	chr1_3:62434481-62434500	None:intergenic	55.0%
	AGGAGCCTGAGCCCATAGAC+TGG	-	chr1_3:62433094-62433113	Msa0131560:intron	60.0%
	GGAGCCTGAGCCCATAGACT+GGG	-	chr1_3:62433095-62433114	Msa0131560:intron	60.0%
	ATCGGGGCAGTTGGGTTCTC+CGG	+	chr1_3:62433485-62433504	None:intergenic	60.0%
!!	CAGATAGGGGTGTTCGGGGT+TGG	+	chr1_3:62434482-62434501	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	62432113	62435815	62432113	ID=Msa0131560;Name=Msa0131560
chr1_3	mRNA	62432113	62435815	62432113	ID=Msa0131560-mRNA-1;Parent=Msa0131560;Name=Msa0131560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89\|1\|1\|1\|1\|1\|5\|314\|177
chr1_3	exon	62432113	62432555	62432113	ID=Msa0131560-mRNA-1:exon:20802;Parent=Msa0131560-mRNA-1
chr1_3	exon	62432635	62432721	62432635	ID=Msa0131560-mRNA-1:exon:20801;Parent=Msa0131560-mRNA-1
chr1_3	exon	62432811	62432875	62432811	ID=Msa0131560-mRNA-1:exon:20800;Parent=Msa0131560-mRNA-1
chr1_3	exon	62434751	62434832	62434751	ID=Msa0131560-mRNA-1:exon:20799;Parent=Msa0131560-mRNA-1
chr1_3	exon	62435556	62435815	62435556	ID=Msa0131560-mRNA-1:exon:20798;Parent=Msa0131560-mRNA-1
chr1_3	five_prime_UTR	62435727	62435815	62435727	ID=Msa0131560-mRNA-1:five_prime_utr;Parent=Msa0131560-mRNA-1
chr1_3	CDS	62435556	62435726	62435556	ID=Msa0131560-mRNA-1:cds;Parent=Msa0131560-mRNA-1
chr1_3	CDS	62434751	62434832	62434751	ID=Msa0131560-mRNA-1:cds;Parent=Msa0131560-mRNA-1
chr1_3	CDS	62432811	62432875	62432811	ID=Msa0131560-mRNA-1:cds;Parent=Msa0131560-mRNA-1
chr1_3	CDS	62432635	62432721	62432635	ID=Msa0131560-mRNA-1:cds;Parent=Msa0131560-mRNA-1
chr1_3	CDS	62432427	62432555	62432427	ID=Msa0131560-mRNA-1:cds;Parent=Msa0131560-mRNA-1
chr1_3	three_prime_UTR	62432113	62432426	62432113	ID=Msa0131560-mRNA-1:three_prime_utr;Parent=Msa0131560-mRNA-1

Gene Sequence

>Msa0131560

ATGAGCGGAACAGTGAAAAAAGTTACAGATGTTGCATTCAAAGCCGGGAAGAAGATCGATTGGGACGGGATGGCTAAGCTTCTCGTCACCGATGAAGCTCGTCGTGAATTTTTCAATCTTCGTCGCGCTTTCGACGAAGTTAACACTCAACTCGAAACAAAGTTCAGCCAGGAGCCTGAGCCCATAGACTGGGAATATTATAGAAAAGGAATTGGCACTCGTTTGGTGGATATGTACAAGCAGCATTATGAGAGCATTGAGATCCCCAAGTTTGTTGACACAGTAACTCCTCAATATAAGCCTAAATTTGATGCACTGTTGGTTGAGCTTAAGGAAGCAGAGGAGAAATCTCTGAAAGAATCTGAACGTTTGGAAAAGGAAATTGCTAATGTACAGTCGCTGAAGAAAAGGATTTCTACCATGACAGCAGATGAGTACTTTGCCGAGCATCCTGAGCTGAAGAAGCAATTTGATGAGGAGATTAGGAACGATAACTGGGGCTATTCACACTACAAAACTGAGCAAAACGCCTGA

Protein sequence

>Msa0131560

MSGTVKKVTDVAFKAGKKIDWDGMAKLLVTDEARREFFNLRRAFDEVNTQLETKFSQEPEPIDWEYYRKGIGTRLVDMYKQHYESIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKESERLEKEIANVQSLKKRISTMTADEYFAEHPELKKQFDEEIRNDNWGYSHYKTEQNA*